Query 040015
Match_columns 1399
No_of_seqs 814 out of 5274
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-47 5.6E-52 471.5 20.7 317 175-515 131-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 2.4E-43 8.4E-48 456.1 33.3 337 1035-1394 339-725 (768)
3 3rgz_A Protein brassinosteroid 100.0 6.1E-42 2.1E-46 443.0 32.7 634 582-1390 72-744 (768)
4 1vt4_I APAF-1 related killer D 100.0 9.4E-39 3.2E-43 390.3 18.8 285 174-506 130-436 (1221)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-36 1.7E-40 385.5 44.6 328 1035-1388 268-624 (680)
6 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-36 9.3E-41 417.6 25.9 312 170-514 122-453 (1249)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-35 1.8E-39 375.8 35.7 275 529-916 24-305 (680)
8 3t6q_A CD180 antigen; protein- 100.0 4.6E-34 1.6E-38 362.0 36.9 293 1040-1360 255-558 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-34 1.7E-38 361.7 32.7 249 1034-1361 302-557 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-33 1.1E-37 354.4 31.9 123 555-686 32-159 (606)
11 3t6q_A CD180 antigen; protein- 100.0 3.7E-33 1.3E-37 353.6 32.3 108 576-686 25-135 (606)
12 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.6E-38 354.1 26.4 306 171-511 123-450 (591)
13 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-31 1.8E-35 344.5 43.0 264 1036-1337 287-559 (844)
14 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-31 2E-35 344.0 41.8 285 1038-1361 265-559 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-30 7.2E-35 324.3 30.8 479 576-1290 18-510 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 3.7E-29 1.3E-33 314.9 34.1 270 1066-1391 259-536 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-29 1E-33 313.7 32.8 97 588-686 6-104 (549)
18 2z63_A TOLL-like receptor 4, v 100.0 1.1E-29 3.7E-34 319.8 27.9 247 1060-1360 278-529 (570)
19 4eco_A Uncharacterized protein 100.0 8E-30 2.7E-34 321.5 21.7 136 1228-1387 487-633 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-28 9.1E-33 302.6 31.0 84 590-675 3-87 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 3.2E-28 1.1E-32 310.1 26.7 203 1060-1310 614-837 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-27 1.2E-31 301.5 32.5 107 577-687 45-155 (635)
23 4ecn_A Leucine-rich repeat pro 100.0 1.4E-27 4.8E-32 304.1 26.4 189 1167-1387 672-873 (876)
24 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-27 2.8E-31 289.1 32.0 107 576-688 13-123 (520)
25 4eco_A Uncharacterized protein 100.0 2.7E-28 9.2E-33 307.5 16.3 154 1192-1390 434-603 (636)
26 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-27 3.2E-31 297.8 29.9 124 555-687 52-180 (635)
27 1jl5_A Outer protein YOPM; leu 99.9 4.6E-26 1.6E-30 273.6 24.8 79 585-674 9-88 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-24 3.5E-29 272.4 30.4 447 554-1154 30-514 (562)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.6E-24 1.2E-28 267.5 32.4 88 585-675 29-118 (562)
30 1jl5_A Outer protein YOPM; leu 99.9 2E-24 6.8E-29 259.4 20.9 333 977-1388 92-431 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-24 7.4E-29 259.3 21.0 356 550-1108 37-392 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 2E-23 7E-28 254.1 26.8 374 988-1390 21-412 (455)
33 1o6v_A Internalin A; bacterial 99.9 5.3E-23 1.8E-27 250.1 27.4 340 996-1384 45-386 (466)
34 1o6v_A Internalin A; bacterial 99.9 2E-22 6.8E-27 245.1 28.4 344 974-1366 44-391 (466)
35 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.6E-27 246.9 23.0 101 587-687 30-136 (455)
36 4fmz_A Internalin; leucine ric 99.9 5.9E-22 2E-26 231.5 23.8 283 1035-1384 62-344 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4.3E-26 235.3 26.9 306 530-1007 42-349 (457)
38 4fmz_A Internalin; leucine ric 99.9 9.9E-22 3.4E-26 229.5 22.8 98 584-686 41-138 (347)
39 2id5_A Lingo-1, leucine rich r 99.9 4.6E-21 1.6E-25 234.5 26.3 293 1040-1360 33-331 (477)
40 3o6n_A APL1; leucine-rich repe 99.9 4.1E-21 1.4E-25 228.0 24.2 110 1033-1149 242-351 (390)
41 3o6n_A APL1; leucine-rich repe 99.9 8.1E-21 2.8E-25 225.4 21.4 304 1016-1364 44-353 (390)
42 3oja_B Anopheles plasmodium-re 99.8 2.1E-20 7.3E-25 234.3 23.7 112 1032-1150 247-358 (597)
43 2id5_A Lingo-1, leucine rich r 99.8 9.2E-20 3.2E-24 222.9 26.6 297 988-1310 22-330 (477)
44 3oja_B Anopheles plasmodium-re 99.8 3.1E-20 1.1E-24 232.8 21.7 303 1016-1360 50-356 (597)
45 2ft3_A Biglycan; proteoglycan, 99.8 3.1E-18 1.1E-22 198.1 25.0 267 1064-1384 54-331 (332)
46 1xku_A Decorin; proteoglycan, 99.8 4.5E-18 1.5E-22 196.6 23.8 159 1166-1359 169-329 (330)
47 3ogk_B Coronatine-insensitive 99.8 2.9E-20 9.8E-25 234.8 3.3 216 973-1200 70-327 (592)
48 1xku_A Decorin; proteoglycan, 99.8 1.9E-17 6.3E-22 191.4 25.4 284 1041-1384 33-330 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-18 2.3E-22 195.1 21.6 292 998-1360 34-331 (332)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.7E-22 206.5 23.9 78 588-674 41-118 (622)
51 4fcg_A Uncharacterized protein 99.8 4.7E-18 1.6E-22 195.1 19.2 232 1088-1383 79-311 (328)
52 3ogk_B Coronatine-insensitive 99.8 1.5E-19 5.1E-24 228.2 6.7 404 953-1382 70-547 (592)
53 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-17 1.2E-21 202.1 24.6 258 1064-1386 40-297 (622)
54 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-18 7.8E-23 196.6 13.1 139 1226-1391 170-309 (313)
55 4fcg_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 188.2 20.1 206 1038-1295 80-295 (328)
56 2p1m_B Transport inhibitor res 99.7 4.7E-19 1.6E-23 223.8 4.0 378 995-1385 64-518 (594)
57 3zyj_A Leucine-rich repeat-con 99.7 1.1E-16 3.9E-21 192.7 23.4 201 1166-1384 86-290 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.7 8.1E-18 2.8E-22 192.7 12.1 265 1066-1389 12-278 (317)
59 3zyi_A Leucine-rich repeat-con 99.7 2E-16 6.7E-21 191.3 24.0 201 1166-1384 97-301 (452)
60 2p1m_B Transport inhibitor res 99.7 2.4E-19 8.3E-24 226.5 -2.6 131 1228-1361 371-518 (594)
61 1z7x_W Ribonuclease inhibitor; 99.7 3.4E-19 1.2E-23 217.2 -3.0 88 1037-1125 26-124 (461)
62 1z7x_W Ribonuclease inhibitor; 99.7 3.4E-19 1.2E-23 217.2 -3.3 335 1039-1384 3-409 (461)
63 1ogq_A PGIP-2, polygalacturona 99.7 2E-17 6.8E-22 188.8 11.3 230 1017-1295 50-286 (313)
64 2z80_A TOLL-like receptor 2, v 99.7 1E-16 3.6E-21 187.0 16.5 245 1090-1360 52-312 (353)
65 3zyj_A Leucine-rich repeat-con 99.7 7.9E-16 2.7E-20 185.3 22.1 224 1039-1288 64-290 (440)
66 3zyi_A Leucine-rich repeat-con 99.7 4.6E-16 1.6E-20 188.1 19.7 223 1040-1288 76-301 (452)
67 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.5E-21 193.5 13.8 237 1088-1381 32-270 (487)
68 2z80_A TOLL-like receptor 2, v 99.7 6.9E-16 2.4E-20 180.0 16.5 110 576-689 44-158 (353)
69 3o53_A Protein LRIM1, AGAP0063 99.7 4.1E-17 1.4E-21 186.8 5.4 254 1053-1366 23-279 (317)
70 2z66_A Variable lymphocyte rec 99.6 2.1E-16 7.3E-21 180.4 11.1 93 577-670 42-139 (306)
71 2z66_A Variable lymphocyte rec 99.6 1.4E-15 4.9E-20 173.5 17.6 243 1093-1364 10-262 (306)
72 1ozn_A Reticulon 4 receptor; N 99.6 4.3E-15 1.5E-19 167.5 19.8 219 1140-1386 14-238 (285)
73 2xwt_C Thyrotropin receptor; s 99.6 2.1E-15 7.1E-20 165.0 16.0 166 1225-1393 51-224 (239)
74 1ozn_A Reticulon 4 receptor; N 99.6 5E-16 1.7E-20 175.2 10.8 62 823-886 173-236 (285)
75 1w5s_A Origin recognition comp 99.6 2.1E-15 7.2E-20 180.5 16.4 314 172-501 22-386 (412)
76 2qen_A Walker-type ATPase; unk 99.6 2.1E-14 7.1E-19 167.7 23.7 292 170-507 10-349 (350)
77 2xwt_C Thyrotropin receptor; s 99.6 5.7E-15 1.9E-19 161.5 15.9 176 1167-1385 54-238 (239)
78 1p9a_G Platelet glycoprotein I 99.6 1.5E-14 5.1E-19 162.5 17.1 123 551-686 6-130 (290)
79 2o6q_A Variable lymphocyte rec 99.6 5.5E-14 1.9E-18 156.7 21.5 195 1170-1384 18-216 (270)
80 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 164.5 20.3 239 1093-1382 12-255 (350)
81 1p9a_G Platelet glycoprotein I 99.6 4.2E-14 1.4E-18 158.9 19.8 196 1166-1384 8-206 (290)
82 1wwl_A Monocyte differentiatio 99.6 3.5E-15 1.2E-19 170.4 11.0 202 585-886 93-307 (312)
83 1h6u_A Internalin H; cell adhe 99.6 1.2E-14 4.1E-19 165.2 13.9 59 824-886 170-228 (308)
84 1wwl_A Monocyte differentiatio 99.6 1.8E-15 6.2E-20 172.7 6.9 150 1192-1384 150-307 (312)
85 4ay9_X Follicle-stimulating ho 99.6 6.1E-14 2.1E-18 162.8 19.3 220 1089-1334 29-255 (350)
86 2fna_A Conserved hypothetical 99.5 2.8E-13 9.6E-18 158.6 23.6 292 170-506 11-356 (357)
87 2z62_A TOLL-like receptor 4, v 99.5 5.3E-14 1.8E-18 157.6 16.6 54 831-886 181-235 (276)
88 3qfl_A MLA10; coiled-coil, (CC 99.5 1.4E-14 4.6E-19 134.0 9.4 80 11-90 2-83 (115)
89 2o6q_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 153.4 19.3 106 577-686 30-139 (270)
90 3oja_A Leucine-rich immune mol 99.5 2.1E-14 7E-19 174.2 11.8 216 1034-1285 53-270 (487)
91 3rfs_A Internalin B, repeat mo 99.5 5.6E-14 1.9E-18 156.7 12.3 200 1166-1391 39-240 (272)
92 1h6u_A Internalin H; cell adhe 99.5 9.7E-14 3.3E-18 157.6 13.5 121 552-687 38-158 (308)
93 2z62_A TOLL-like receptor 4, v 99.5 4.7E-13 1.6E-17 149.9 16.7 203 1168-1389 28-240 (276)
94 4glp_A Monocyte differentiatio 99.4 2.4E-13 8.4E-18 154.9 13.0 203 586-886 90-305 (310)
95 3m19_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 142.2 18.3 177 1169-1364 15-193 (251)
96 3rfs_A Internalin B, repeat mo 99.4 1.6E-12 5.4E-17 144.9 16.9 180 1191-1391 41-223 (272)
97 1h6t_A Internalin B; cell adhe 99.4 4.9E-13 1.7E-17 150.3 12.1 98 584-686 43-140 (291)
98 2ast_B S-phase kinase-associat 99.4 3.8E-14 1.3E-18 164.3 2.4 235 1137-1389 47-308 (336)
99 2ast_B S-phase kinase-associat 99.4 6E-14 2.1E-18 162.6 3.9 261 1092-1384 49-327 (336)
100 4glp_A Monocyte differentiatio 99.4 9.7E-13 3.3E-17 149.9 13.4 201 1167-1384 90-305 (310)
101 3m19_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 140.3 16.9 87 587-674 35-124 (251)
102 2qby_B CDC6 homolog 3, cell di 99.4 2.4E-11 8.1E-16 143.5 24.1 294 172-489 20-339 (384)
103 2v1u_A Cell division control p 99.4 1.9E-11 6.5E-16 144.7 23.3 296 172-489 19-351 (387)
104 1fnn_A CDC6P, cell division co 99.3 4.1E-11 1.4E-15 141.8 23.6 298 172-490 17-352 (389)
105 2v9t_B SLIT homolog 2 protein 99.3 2.5E-12 8.6E-17 137.7 11.6 128 555-690 32-162 (220)
106 1h6t_A Internalin B; cell adhe 99.3 5.5E-12 1.9E-16 141.7 14.1 122 551-687 42-163 (291)
107 2qby_A CDC6 homolog 1, cell di 99.3 1.9E-11 6.6E-16 144.6 19.5 296 171-489 19-348 (386)
108 1m9s_A Internalin B; cell inva 99.3 3.1E-12 1.1E-16 157.8 12.4 97 584-685 40-136 (605)
109 2ca6_A RAN GTPase-activating p 99.3 1.1E-13 3.9E-18 163.4 -1.6 130 550-686 27-193 (386)
110 3e6j_A Variable lymphocyte rec 99.3 9.4E-12 3.2E-16 134.3 13.1 125 555-688 40-167 (229)
111 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6.2E-16 149.0 17.0 184 1138-1369 60-250 (571)
112 3cvr_A Invasion plasmid antige 99.3 1.2E-11 4.2E-16 150.5 15.5 78 587-674 80-157 (571)
113 2v70_A SLIT-2, SLIT homolog 2 99.3 9.1E-12 3.1E-16 133.4 11.1 129 555-690 32-163 (220)
114 2je0_A Acidic leucine-rich nuc 99.3 6.6E-12 2.2E-16 125.5 9.1 124 554-687 16-147 (149)
115 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.9E-16 130.4 11.2 101 583-685 84-186 (197)
116 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.9E-16 126.6 10.7 127 554-690 23-157 (168)
117 1xeu_A Internalin C; cellular 99.3 2.8E-12 9.5E-17 141.6 6.5 97 583-685 37-133 (263)
118 3goz_A Leucine-rich repeat-con 99.3 1.6E-12 5.5E-17 151.7 4.5 237 1035-1287 18-294 (362)
119 2ca6_A RAN GTPase-activating p 99.2 1.4E-12 4.9E-17 153.9 3.4 89 1037-1125 30-133 (386)
120 1m9s_A Internalin B; cell inva 99.2 8.2E-12 2.8E-16 154.0 9.9 166 1191-1384 43-208 (605)
121 4ezg_A Putative uncharacterize 99.2 3.2E-11 1.1E-15 126.9 12.9 149 1167-1359 43-191 (197)
122 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.2E-16 126.7 10.2 131 549-690 13-150 (176)
123 2o6s_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 126.5 14.8 183 1172-1384 11-196 (208)
124 2v70_A SLIT-2, SLIT homolog 2 99.2 3E-11 1E-15 129.4 12.4 135 528-670 30-166 (220)
125 2o6s_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 127.0 13.0 125 554-687 27-155 (208)
126 3goz_A Leucine-rich repeat-con 99.2 2.8E-12 9.5E-17 149.7 3.2 81 1044-1125 3-91 (362)
127 3e6j_A Variable lymphocyte rec 99.2 6.7E-11 2.3E-15 127.6 13.8 135 527-671 37-173 (229)
128 2wfh_A SLIT homolog 2 protein 99.2 4.1E-11 1.4E-15 125.1 11.2 110 576-689 23-135 (193)
129 1xeu_A Internalin C; cellular 99.2 8.3E-11 2.8E-15 129.8 13.4 149 550-746 36-184 (263)
130 2v9t_B SLIT homolog 2 protein 99.2 1.4E-10 4.9E-15 124.0 14.8 151 1172-1364 15-166 (220)
131 2ell_A Acidic leucine-rich nuc 99.2 5.4E-11 1.9E-15 121.6 9.8 137 528-675 22-165 (168)
132 1w8a_A SLIT protein; signaling 99.2 6.9E-11 2.4E-15 123.5 10.4 108 576-687 21-133 (192)
133 2xot_A Amphoterin-induced prot 99.2 1.2E-10 4.2E-15 135.5 13.1 146 1171-1335 21-173 (361)
134 4b8c_D Glucose-repressible alc 99.1 4.5E-11 1.5E-15 151.7 9.3 109 578-687 215-323 (727)
135 2xot_A Amphoterin-induced prot 99.1 8.6E-11 2.9E-15 136.8 10.8 124 556-687 40-170 (361)
136 3sb4_A Hypothetical leucine ri 99.1 2.3E-10 7.7E-15 131.4 13.8 100 1275-1380 224-328 (329)
137 1dce_A Protein (RAB geranylger 99.1 9.1E-11 3.1E-15 143.9 11.0 118 556-685 442-565 (567)
138 1njg_A DNA polymerase III subu 99.1 6.8E-10 2.3E-14 122.1 16.6 199 172-387 23-231 (250)
139 2je0_A Acidic leucine-rich nuc 99.1 6.8E-11 2.3E-15 118.0 7.6 102 585-687 15-120 (149)
140 2r9u_A Variable lymphocyte rec 99.1 1.9E-10 6.4E-15 117.7 8.8 100 576-679 25-127 (174)
141 4b8c_D Glucose-repressible alc 99.1 1.2E-10 4E-15 147.9 7.9 117 549-675 218-334 (727)
142 1w8a_A SLIT protein; signaling 99.0 5.2E-10 1.8E-14 116.8 10.6 107 556-670 30-139 (192)
143 1a9n_A U2A', U2A'; complex (nu 99.0 2.6E-10 8.8E-15 117.4 7.5 102 583-687 15-120 (176)
144 2wfh_A SLIT homolog 2 protein 99.0 8E-10 2.7E-14 115.3 11.3 106 555-670 31-139 (193)
145 2chg_A Replication factor C sm 99.0 3.2E-09 1.1E-13 114.6 16.0 180 172-385 17-205 (226)
146 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 111.2 12.7 100 587-687 28-131 (177)
147 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.6E-14 112.0 10.0 99 589-690 14-115 (174)
148 3g39_A Variable lymphocyte rec 99.0 2.2E-09 7.7E-14 109.3 11.9 94 576-673 22-118 (170)
149 2o6r_A Variable lymphocyte rec 99.0 2.3E-09 8E-14 110.4 12.1 109 555-672 28-139 (177)
150 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.8E-14 124.1 12.0 92 1299-1396 225-319 (329)
151 1dce_A Protein (RAB geranylger 98.9 8.3E-10 2.8E-14 135.4 9.0 98 588-688 442-541 (567)
152 4fs7_A Uncharacterized protein 98.9 2.5E-08 8.6E-13 117.5 21.5 299 1033-1378 88-393 (394)
153 3g39_A Variable lymphocyte rec 98.9 1.9E-09 6.5E-14 109.8 10.1 100 588-690 10-112 (170)
154 4fdw_A Leucine rich hypothetic 98.9 3.2E-08 1.1E-12 115.7 20.4 249 1052-1358 124-379 (401)
155 4fdw_A Leucine rich hypothetic 98.9 7.2E-08 2.5E-12 112.7 22.5 191 1166-1382 178-379 (401)
156 1ds9_A Outer arm dynein; leuci 98.9 2.3E-11 7.8E-16 128.1 -6.6 125 550-686 43-180 (198)
157 1hqc_A RUVB; extended AAA-ATPa 98.9 5.9E-09 2E-13 119.5 12.8 268 172-488 12-324 (324)
158 1ds9_A Outer arm dynein; leuci 98.9 2.6E-11 9E-16 127.6 -6.9 103 582-687 43-147 (198)
159 1sxj_B Activator 1 37 kDa subu 98.8 1.3E-08 4.3E-13 116.8 13.5 181 172-386 21-212 (323)
160 4fs7_A Uncharacterized protein 98.7 2.2E-07 7.7E-12 109.3 19.5 145 1225-1382 226-375 (394)
161 2ifg_A High affinity nerve gro 98.7 2.6E-08 9E-13 115.3 9.1 81 593-675 14-98 (347)
162 1iqp_A RFCS; clamp loader, ext 98.6 1.1E-07 3.8E-12 109.1 12.3 182 172-387 25-215 (327)
163 3te6_A Regulatory protein SIR3 98.6 2.2E-07 7.5E-12 102.8 13.7 173 173-352 21-213 (318)
164 2ifg_A High affinity nerve gro 98.5 1.5E-07 5E-12 109.0 9.8 93 576-671 22-117 (347)
165 2chq_A Replication factor C sm 98.4 1E-06 3.5E-11 100.5 14.0 182 172-384 17-204 (319)
166 4gt6_A Cell surface protein; l 98.4 1.6E-05 5.3E-10 93.5 24.5 106 1034-1145 82-190 (394)
167 1jr3_A DNA polymerase III subu 98.4 1.2E-06 4.1E-11 102.5 14.6 196 172-384 16-221 (373)
168 4gt6_A Cell surface protein; l 98.4 9.8E-06 3.3E-10 95.2 20.3 124 1247-1381 259-386 (394)
169 3bos_A Putative DNA replicatio 98.3 8.4E-07 2.9E-11 96.6 8.4 174 172-384 28-217 (242)
170 1jbk_A CLPB protein; beta barr 98.3 1.4E-06 4.7E-11 91.1 8.6 45 172-223 22-66 (195)
171 3pfi_A Holliday junction ATP-d 98.2 1.8E-05 6.2E-10 90.8 17.5 178 172-384 29-227 (338)
172 1sxj_D Activator 1 41 kDa subu 98.1 6.2E-06 2.1E-10 95.5 11.6 194 172-383 37-234 (353)
173 4h09_A Hypothetical leucine ri 98.1 0.00022 7.4E-09 83.3 24.8 303 1059-1394 41-352 (379)
174 3pvs_A Replication-associated 98.1 2.8E-05 9.6E-10 91.4 15.4 179 172-384 26-215 (447)
175 3e4g_A ATP synthase subunit S, 98.1 1.2E-06 4.1E-11 87.1 2.8 87 1253-1339 61-153 (176)
176 3h4m_A Proteasome-activating n 98.0 2.3E-05 7.9E-10 87.4 13.3 186 171-382 16-229 (285)
177 3uk6_A RUVB-like 2; hexameric 98.0 5.3E-05 1.8E-09 88.1 16.4 199 172-383 44-302 (368)
178 2z4s_A Chromosomal replication 98.0 2.5E-05 8.7E-10 92.1 13.7 181 200-402 130-331 (440)
179 1sxj_A Activator 1 95 kDa subu 98.0 2.7E-05 9.2E-10 94.3 12.9 199 172-385 39-254 (516)
180 3e4g_A ATP synthase subunit S, 98.0 8.3E-06 2.8E-10 81.0 6.8 88 1041-1129 63-154 (176)
181 1sxj_E Activator 1 40 kDa subu 98.0 1.3E-05 4.6E-10 92.6 9.7 197 172-385 14-238 (354)
182 1d2n_A N-ethylmaleimide-sensit 98.0 0.00011 3.7E-09 81.1 16.4 171 173-376 34-229 (272)
183 4h09_A Hypothetical leucine ri 97.9 0.0006 2.1E-08 79.4 22.9 139 1225-1373 213-356 (379)
184 3u61_B DNA polymerase accessor 97.9 4E-05 1.4E-09 87.2 12.4 175 172-383 26-215 (324)
185 1a5t_A Delta prime, HOLB; zinc 97.9 0.00014 4.8E-09 82.6 15.9 171 178-383 8-204 (334)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.9 0.00018 6.1E-09 79.0 15.8 188 172-383 6-221 (262)
187 3un9_A NLR family member X1; l 97.8 1.3E-06 4.5E-11 100.9 -1.8 125 555-687 101-246 (372)
188 3syl_A Protein CBBX; photosynt 97.8 0.00011 3.9E-09 82.8 14.3 161 173-352 32-219 (309)
189 2p65_A Hypothetical protein PF 97.8 1.7E-05 5.7E-10 82.1 6.7 45 172-223 22-66 (187)
190 3un9_A NLR family member X1; l 97.8 5.8E-06 2E-10 95.5 2.8 115 553-672 124-254 (372)
191 3n70_A Transport activator; si 97.8 2.2E-05 7.6E-10 76.9 6.3 113 173-319 2-115 (145)
192 2ra8_A Uncharacterized protein 97.7 1.1E-05 3.6E-10 92.3 3.3 59 1225-1286 168-228 (362)
193 1sxj_C Activator 1 40 kDa subu 97.7 0.00017 5.7E-09 82.5 13.4 175 172-380 25-208 (340)
194 1l8q_A Chromosomal replication 97.7 0.00021 7.3E-09 81.1 14.1 155 200-379 37-203 (324)
195 2ra8_A Uncharacterized protein 97.7 3.4E-05 1.2E-09 88.1 7.4 63 1062-1124 250-317 (362)
196 3rw6_A Nuclear RNA export fact 97.7 2.7E-05 9.2E-10 83.9 5.4 58 585-643 168-230 (267)
197 3eie_A Vacuolar protein sortin 97.6 0.00041 1.4E-08 78.4 14.5 186 171-383 17-227 (322)
198 3pxg_A Negative regulator of g 97.6 0.00019 6.5E-09 85.5 12.0 147 172-350 180-338 (468)
199 3d8b_A Fidgetin-like protein 1 97.6 0.00047 1.6E-08 79.1 14.8 188 172-384 84-295 (357)
200 2qp9_X Vacuolar protein sortin 97.6 0.00044 1.5E-08 79.1 14.3 186 172-384 51-261 (355)
201 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0013 4.4E-08 74.0 17.2 189 172-384 12-223 (322)
202 3rw6_A Nuclear RNA export fact 97.6 1.1E-05 3.8E-10 86.9 0.2 106 583-690 137-261 (267)
203 3b9p_A CG5977-PA, isoform A; A 97.6 0.0016 5.3E-08 72.9 17.8 185 172-383 21-232 (297)
204 1io0_A Tropomodulin; LRR prote 97.5 2.6E-05 9E-10 80.1 2.5 87 583-670 61-164 (185)
205 1io0_A Tropomodulin; LRR prote 97.5 2.4E-05 8.3E-10 80.3 2.2 106 581-687 30-158 (185)
206 3ec2_A DNA replication protein 97.5 7.4E-05 2.5E-09 76.5 5.8 121 177-319 19-142 (180)
207 1qvr_A CLPB protein; coiled co 97.5 0.00014 4.7E-09 94.0 9.3 155 172-349 170-344 (854)
208 2gno_A DNA polymerase III, gam 97.5 0.00045 1.5E-08 76.6 12.0 149 176-350 1-152 (305)
209 2w58_A DNAI, primosome compone 97.5 0.00011 3.6E-09 77.1 6.6 119 179-319 36-158 (202)
210 3cf0_A Transitional endoplasmi 97.5 0.0015 5.1E-08 72.9 16.2 182 172-379 15-223 (301)
211 2zan_A Vacuolar protein sortin 97.4 0.0017 5.8E-08 76.7 16.7 189 171-383 133-344 (444)
212 3vfd_A Spastin; ATPase, microt 97.4 0.0017 5.8E-08 75.6 16.0 188 171-383 114-325 (389)
213 3co5_A Putative two-component 97.4 8.1E-05 2.8E-09 72.6 3.7 110 173-319 5-115 (143)
214 1in4_A RUVB, holliday junction 97.3 0.003 1E-07 71.5 16.2 177 172-383 25-222 (334)
215 2bjv_A PSP operon transcriptio 97.3 0.00053 1.8E-08 75.2 9.5 47 172-223 6-52 (265)
216 4fcw_A Chaperone protein CLPB; 97.3 0.00094 3.2E-08 75.3 11.4 123 173-304 18-143 (311)
217 3hu3_A Transitional endoplasmi 97.2 0.00088 3E-08 79.5 11.0 185 172-382 204-413 (489)
218 1ojl_A Transcriptional regulat 97.2 0.00086 2.9E-08 74.7 10.0 47 172-223 2-48 (304)
219 3pxi_A Negative regulator of g 97.2 0.0011 3.8E-08 84.6 12.1 149 172-350 180-338 (758)
220 1ofh_A ATP-dependent HSL prote 97.2 0.0023 7.9E-08 72.0 13.6 52 172-223 15-73 (310)
221 2kjq_A DNAA-related protein; s 97.1 0.00027 9.2E-09 69.2 4.3 87 200-319 36-124 (149)
222 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0021 7.1E-08 82.2 13.2 156 172-350 186-362 (758)
223 4b4t_J 26S protease regulatory 97.1 0.0069 2.4E-07 68.6 15.8 180 172-377 148-354 (405)
224 4b4t_K 26S protease regulatory 97.1 0.0057 1.9E-07 70.5 15.2 181 171-377 171-379 (428)
225 2c9o_A RUVB-like 1; hexameric 97.1 0.003 1E-07 75.0 13.5 98 282-384 297-410 (456)
226 1lv7_A FTSH; alpha/beta domain 97.0 0.0077 2.6E-07 65.4 15.0 185 172-382 12-223 (257)
227 3pxi_A Negative regulator of g 96.9 0.0008 2.7E-08 85.9 7.4 156 172-349 491-674 (758)
228 4b4t_L 26S protease subunit RP 96.9 0.011 3.7E-07 68.2 15.9 181 171-377 180-387 (437)
229 2r62_A Cell division protease 96.8 0.0016 5.4E-08 71.6 7.3 52 172-223 11-67 (268)
230 4b4t_H 26S protease regulatory 96.8 0.018 6.1E-07 66.1 15.6 180 172-377 209-415 (467)
231 4b4t_M 26S protease regulatory 96.6 0.007 2.4E-07 69.7 11.3 180 172-377 181-387 (434)
232 3t15_A Ribulose bisphosphate c 96.6 0.0052 1.8E-07 68.0 9.9 25 199-223 35-59 (293)
233 2ce7_A Cell division protein F 96.6 0.019 6.6E-07 67.3 15.1 180 172-377 16-221 (476)
234 4b4t_I 26S protease regulatory 96.6 0.016 5.5E-07 65.8 13.3 180 172-377 182-388 (437)
235 2r44_A Uncharacterized protein 96.5 0.0056 1.9E-07 69.5 9.8 150 173-351 28-199 (331)
236 2qgz_A Helicase loader, putati 96.4 0.0024 8.3E-08 71.1 5.5 57 177-238 133-189 (308)
237 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.015 5E-07 68.9 12.0 43 173-224 23-65 (500)
238 3m6a_A ATP-dependent protease 96.3 0.0085 2.9E-07 72.5 9.7 51 172-223 81-131 (543)
239 2cvh_A DNA repair and recombin 96.2 0.01 3.5E-07 62.7 8.7 85 200-290 20-115 (220)
240 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0029 9.8E-08 69.0 4.1 68 200-290 123-192 (331)
241 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0096 3.3E-07 76.1 8.9 122 172-305 458-582 (758)
242 1qvr_A CLPB protein; coiled co 96.0 0.014 4.9E-07 75.2 10.3 137 173-319 559-710 (854)
243 3cf2_A TER ATPase, transitiona 95.8 0.047 1.6E-06 68.0 13.2 181 172-378 204-408 (806)
244 2x8a_A Nuclear valosin-contain 95.8 0.061 2.1E-06 58.6 12.8 157 172-350 10-191 (274)
245 1um8_A ATP-dependent CLP prote 95.6 0.031 1.1E-06 64.5 10.2 52 172-223 21-95 (376)
246 3rfe_A Platelet glycoprotein I 95.5 0.017 6E-07 54.5 6.2 51 591-643 12-65 (130)
247 1ypw_A Transitional endoplasmi 95.4 0.057 1.9E-06 68.6 12.2 158 172-350 204-385 (806)
248 1iy2_A ATP-dependent metallopr 95.4 0.097 3.3E-06 57.3 12.6 52 171-223 39-96 (278)
249 2b8t_A Thymidine kinase; deoxy 95.4 0.0092 3.2E-07 62.2 3.9 113 200-320 12-126 (223)
250 1v5w_A DMC1, meiotic recombina 95.1 0.051 1.7E-06 61.5 9.5 57 199-256 121-181 (343)
251 1jr3_D DNA polymerase III, del 95.1 0.22 7.6E-06 56.4 14.8 157 200-383 18-184 (343)
252 3hr8_A Protein RECA; alpha and 95.0 0.04 1.4E-06 61.8 8.2 85 199-290 60-149 (356)
253 1ye8_A Protein THEP1, hypothet 94.8 0.1 3.4E-06 52.5 9.8 22 202-223 2-23 (178)
254 2dhr_A FTSH; AAA+ protein, hex 94.8 0.099 3.4E-06 61.7 11.0 177 171-377 30-236 (499)
255 1xp8_A RECA protein, recombina 94.8 0.047 1.6E-06 61.8 7.9 84 200-290 74-162 (366)
256 2z43_A DNA repair and recombin 94.8 0.062 2.1E-06 60.3 8.9 89 200-289 107-212 (324)
257 1n0w_A DNA repair protein RAD5 94.6 0.051 1.7E-06 58.3 7.5 56 200-256 24-83 (243)
258 1u94_A RECA protein, recombina 94.5 0.046 1.6E-06 61.7 7.1 84 200-290 63-151 (356)
259 3io5_A Recombination and repai 94.5 0.059 2E-06 58.4 7.5 84 202-290 30-121 (333)
260 3rfe_A Platelet glycoprotein I 94.5 0.059 2E-06 50.8 6.6 55 613-670 11-68 (130)
261 1g5t_A COB(I)alamin adenosyltr 94.5 0.021 7.3E-07 57.4 3.6 114 201-320 29-163 (196)
262 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.059 2E-06 57.3 7.5 116 200-320 23-168 (235)
263 2i1q_A DNA repair and recombin 94.4 0.055 1.9E-06 60.8 7.3 58 199-257 97-168 (322)
264 1rz3_A Hypothetical protein rb 94.4 0.037 1.3E-06 57.3 5.4 43 176-222 2-44 (201)
265 2cbz_A Multidrug resistance-as 94.3 0.23 7.9E-06 52.5 11.6 24 200-223 31-54 (237)
266 2px0_A Flagellar biosynthesis 94.1 0.09 3.1E-06 57.8 8.0 87 199-289 104-191 (296)
267 1odf_A YGR205W, hypothetical 3 94.1 0.22 7.5E-06 54.4 11.0 54 198-251 29-83 (290)
268 2zr9_A Protein RECA, recombina 93.7 0.1 3.4E-06 58.9 7.7 85 199-290 60-149 (349)
269 3tqc_A Pantothenate kinase; bi 93.6 0.16 5.5E-06 56.1 8.8 45 175-222 70-114 (321)
270 2pze_A Cystic fibrosis transme 93.5 0.57 1.9E-05 49.2 12.7 24 200-223 34-57 (229)
271 3bh0_A DNAB-like replicative h 93.4 0.22 7.5E-06 55.4 9.8 52 200-255 68-119 (315)
272 3c8u_A Fructokinase; YP_612366 93.4 0.053 1.8E-06 56.4 4.4 38 180-222 7-44 (208)
273 3ice_A Transcription terminati 93.0 0.083 2.8E-06 58.7 5.3 86 200-289 174-270 (422)
274 1pzn_A RAD51, DNA repair and r 92.7 0.16 5.5E-06 57.4 7.3 91 199-290 130-241 (349)
275 4a74_A DNA repair and recombin 92.6 0.23 7.9E-06 52.5 8.2 46 199-244 24-73 (231)
276 1zp6_A Hypothetical protein AT 92.6 0.063 2.2E-06 55.0 3.6 24 200-223 9-32 (191)
277 2eyu_A Twitching motility prot 92.4 0.15 5E-06 54.9 6.3 110 200-324 25-137 (261)
278 2ga8_A Hypothetical 39.9 kDa p 92.4 0.11 3.8E-06 57.6 5.3 45 175-222 2-46 (359)
279 1vma_A Cell division protein F 92.4 0.22 7.6E-06 54.7 7.7 89 199-290 103-196 (306)
280 1qhx_A CPT, protein (chloramph 92.3 0.054 1.9E-06 54.7 2.6 22 201-222 4-25 (178)
281 3hws_A ATP-dependent CLP prote 92.2 0.091 3.1E-06 60.2 4.6 51 173-223 16-74 (363)
282 3lw7_A Adenylate kinase relate 92.1 0.066 2.2E-06 53.9 3.0 20 201-220 2-21 (179)
283 3kb2_A SPBC2 prophage-derived 92.1 0.061 2.1E-06 54.0 2.6 22 201-222 2-23 (173)
284 3vaa_A Shikimate kinase, SK; s 92.1 0.063 2.1E-06 55.4 2.8 23 200-222 25-47 (199)
285 2r6a_A DNAB helicase, replicat 92.0 2 6.9E-05 50.4 16.1 50 200-252 203-252 (454)
286 3dm5_A SRP54, signal recogniti 92.0 0.83 2.8E-05 52.6 12.1 24 199-222 99-122 (443)
287 1kgd_A CASK, peripheral plasma 91.9 0.079 2.7E-06 53.6 3.2 23 200-222 5-27 (180)
288 3uie_A Adenylyl-sulfate kinase 91.8 0.095 3.2E-06 54.1 3.8 24 200-223 25-48 (200)
289 3lda_A DNA repair protein RAD5 91.8 0.27 9.3E-06 56.2 7.8 57 200-257 178-238 (400)
290 1ly1_A Polynucleotide kinase; 91.8 0.079 2.7E-06 53.6 3.1 22 201-222 3-24 (181)
291 1sky_E F1-ATPase, F1-ATP synth 91.7 0.15 5.3E-06 58.7 5.6 89 201-290 152-255 (473)
292 3l0o_A Transcription terminati 91.4 0.5 1.7E-05 52.5 9.0 36 182-223 163-198 (427)
293 1knq_A Gluconate kinase; ALFA/ 91.4 0.12 4.1E-06 51.9 3.9 24 199-222 7-30 (175)
294 2xxa_A Signal recognition part 91.3 0.38 1.3E-05 55.8 8.5 25 199-223 99-123 (433)
295 3e70_C DPA, signal recognition 91.3 0.98 3.3E-05 50.1 11.5 26 198-223 127-152 (328)
296 1kag_A SKI, shikimate kinase I 91.3 0.075 2.6E-06 53.3 2.3 22 201-222 5-26 (173)
297 3trf_A Shikimate kinase, SK; a 91.3 0.083 2.8E-06 53.7 2.6 23 200-222 5-27 (185)
298 1ixz_A ATP-dependent metallopr 91.1 0.17 5.8E-06 54.5 5.0 51 172-223 16-72 (254)
299 4gp7_A Metallophosphoesterase; 91.1 0.11 3.8E-06 51.9 3.2 23 200-222 9-31 (171)
300 4eun_A Thermoresistant glucoki 91.1 0.1 3.5E-06 53.8 3.1 23 200-222 29-51 (200)
301 3upu_A ATP-dependent DNA helic 91.0 0.56 1.9E-05 55.4 9.8 38 178-223 31-68 (459)
302 3tau_A Guanylate kinase, GMP k 91.0 0.11 3.8E-06 53.9 3.2 24 200-223 8-31 (208)
303 3jvv_A Twitching mobility prot 91.0 0.045 1.5E-06 61.8 0.2 113 200-324 123-235 (356)
304 1gvn_B Zeta; postsegregational 90.9 0.16 5.4E-06 55.6 4.5 25 198-222 31-55 (287)
305 3tr0_A Guanylate kinase, GMP k 90.9 0.11 3.8E-06 53.8 3.2 23 200-222 7-29 (205)
306 2rhm_A Putative kinase; P-loop 90.9 0.13 4.3E-06 52.7 3.5 23 200-222 5-27 (193)
307 2ffh_A Protein (FFH); SRP54, s 90.8 0.6 2E-05 53.7 9.4 24 200-223 98-121 (425)
308 2bdt_A BH3686; alpha-beta prot 90.8 0.12 4.3E-06 52.6 3.4 22 201-222 3-24 (189)
309 2orw_A Thymidine kinase; TMTK, 90.7 0.034 1.2E-06 56.3 -1.0 22 201-222 4-25 (184)
310 4a1f_A DNAB helicase, replicat 90.7 0.39 1.3E-05 53.4 7.5 52 200-255 46-97 (338)
311 2qt1_A Nicotinamide riboside k 90.7 0.15 5.2E-06 52.8 4.1 24 199-222 20-43 (207)
312 3t61_A Gluconokinase; PSI-biol 90.7 0.095 3.2E-06 54.2 2.4 23 200-222 18-40 (202)
313 1pgv_A TMD-1, tropomodulin TMD 90.7 0.16 5.5E-06 51.3 3.9 84 583-667 37-136 (197)
314 1zuh_A Shikimate kinase; alpha 90.7 0.1 3.6E-06 51.9 2.6 24 199-222 6-29 (168)
315 1g8p_A Magnesium-chelatase 38 90.7 0.11 3.8E-06 59.2 3.1 45 172-223 24-68 (350)
316 1nks_A Adenylate kinase; therm 90.6 0.11 3.8E-06 53.1 2.9 22 201-222 2-23 (194)
317 1y63_A LMAJ004144AAA protein; 90.6 0.13 4.3E-06 52.2 3.2 23 200-222 10-32 (184)
318 3kl4_A SRP54, signal recogniti 90.6 1 3.5E-05 51.8 11.1 25 199-223 96-120 (433)
319 2ck3_D ATP synthase subunit be 90.6 0.66 2.2E-05 53.4 9.3 89 200-289 153-262 (482)
320 2ewv_A Twitching motility prot 90.5 0.19 6.3E-06 57.4 4.8 106 200-323 136-247 (372)
321 3asz_A Uridine kinase; cytidin 90.5 0.13 4.6E-06 53.5 3.4 24 199-222 5-28 (211)
322 3iij_A Coilin-interacting nucl 90.5 0.099 3.4E-06 52.8 2.3 23 200-222 11-33 (180)
323 4akg_A Glutathione S-transfera 90.5 2.4 8.4E-05 60.2 16.6 80 201-291 1268-1347(2695)
324 1ukz_A Uridylate kinase; trans 90.5 0.15 5.1E-06 52.7 3.6 24 199-222 14-37 (203)
325 3a00_A Guanylate kinase, GMP k 90.4 0.1 3.5E-06 53.0 2.3 22 201-222 2-23 (186)
326 1xjc_A MOBB protein homolog; s 90.4 0.13 4.5E-06 50.6 2.9 25 199-223 3-27 (169)
327 2hf9_A Probable hydrogenase ni 90.4 0.19 6.5E-06 52.9 4.5 39 178-223 23-61 (226)
328 2yvu_A Probable adenylyl-sulfa 90.4 0.17 6E-06 51.3 4.0 25 199-223 12-36 (186)
329 2ze6_A Isopentenyl transferase 90.4 0.13 4.3E-06 55.3 3.1 22 201-222 2-23 (253)
330 2qor_A Guanylate kinase; phosp 90.3 0.1 3.6E-06 53.9 2.4 24 199-222 11-34 (204)
331 3fwy_A Light-independent proto 90.3 0.14 4.9E-06 56.6 3.5 40 199-240 47-86 (314)
332 1uf9_A TT1252 protein; P-loop, 90.3 0.14 4.7E-06 53.0 3.2 25 198-222 6-30 (203)
333 1ls1_A Signal recognition part 90.3 0.54 1.9E-05 51.5 8.1 24 200-223 98-121 (295)
334 2j41_A Guanylate kinase; GMP, 90.2 0.14 4.8E-06 53.1 3.2 24 200-223 6-29 (207)
335 1jjv_A Dephospho-COA kinase; P 90.2 0.15 5.1E-06 52.8 3.4 22 201-222 3-24 (206)
336 1kht_A Adenylate kinase; phosp 90.1 0.13 4.3E-06 52.6 2.8 22 201-222 4-25 (192)
337 1ypw_A Transitional endoplasmi 90.1 0.17 5.7E-06 64.3 4.4 53 171-223 476-534 (806)
338 1htw_A HI0065; nucleotide-bind 90.0 0.18 6.1E-06 49.3 3.6 23 200-222 33-55 (158)
339 1via_A Shikimate kinase; struc 89.9 0.11 3.7E-06 52.2 2.0 21 202-222 6-26 (175)
340 1ex7_A Guanylate kinase; subst 89.9 0.093 3.2E-06 52.8 1.5 22 201-222 2-23 (186)
341 1lvg_A Guanylate kinase, GMP k 89.9 0.12 4.1E-06 53.1 2.3 23 200-222 4-26 (198)
342 2c95_A Adenylate kinase 1; tra 89.8 0.14 4.7E-06 52.6 2.8 23 200-222 9-31 (196)
343 2jaq_A Deoxyguanosine kinase; 89.8 0.14 4.8E-06 53.0 2.8 21 202-222 2-22 (205)
344 3umf_A Adenylate kinase; rossm 89.8 0.17 5.7E-06 52.4 3.3 25 198-222 27-51 (217)
345 2if2_A Dephospho-COA kinase; a 89.8 0.14 4.7E-06 53.1 2.7 21 202-222 3-23 (204)
346 3ney_A 55 kDa erythrocyte memb 89.7 0.16 5.5E-06 51.5 3.0 24 199-222 18-41 (197)
347 1j8m_F SRP54, signal recogniti 89.7 1.2 4E-05 48.8 10.2 38 200-239 98-135 (297)
348 1tev_A UMP-CMP kinase; ploop, 89.7 0.16 5.4E-06 52.1 3.1 23 200-222 3-25 (196)
349 3a4m_A L-seryl-tRNA(SEC) kinas 89.7 0.16 5.5E-06 54.8 3.2 23 200-222 4-26 (260)
350 3aez_A Pantothenate kinase; tr 89.7 0.18 6.1E-06 55.8 3.6 25 198-222 88-112 (312)
351 2wsm_A Hydrogenase expression/ 89.7 0.22 7.6E-06 52.2 4.3 41 176-223 13-53 (221)
352 3cm0_A Adenylate kinase; ATP-b 89.6 0.17 5.8E-06 51.4 3.2 23 200-222 4-26 (186)
353 2iyv_A Shikimate kinase, SK; t 89.6 0.11 3.9E-06 52.6 1.8 21 202-222 4-24 (184)
354 2p5t_B PEZT; postsegregational 89.5 0.27 9.1E-06 52.8 4.8 42 179-222 13-54 (253)
355 2pez_A Bifunctional 3'-phospho 89.5 0.18 6.2E-06 50.8 3.2 24 199-222 4-27 (179)
356 3tlx_A Adenylate kinase 2; str 89.5 0.26 9E-06 52.4 4.7 24 199-222 28-51 (243)
357 1qf9_A UMP/CMP kinase, protein 89.4 0.2 6.7E-06 51.3 3.6 23 200-222 6-28 (194)
358 1znw_A Guanylate kinase, GMP k 89.4 0.17 5.8E-06 52.4 3.1 23 200-222 20-42 (207)
359 1zu4_A FTSY; GTPase, signal re 89.4 0.98 3.3E-05 50.0 9.4 25 199-223 104-128 (320)
360 2cdn_A Adenylate kinase; phosp 89.4 0.18 6.1E-06 52.0 3.2 23 200-222 20-42 (201)
361 1cke_A CK, MSSA, protein (cyti 89.4 0.17 5.8E-06 53.4 3.1 22 201-222 6-27 (227)
362 2grj_A Dephospho-COA kinase; T 89.3 0.19 6.4E-06 51.1 3.2 24 199-222 11-34 (192)
363 1tue_A Replication protein E1; 89.3 0.23 7.9E-06 50.1 3.7 38 180-223 44-81 (212)
364 3cf2_A TER ATPase, transitiona 89.3 0.74 2.5E-05 57.4 9.1 101 170-291 475-581 (806)
365 2jeo_A Uridine-cytidine kinase 89.3 0.2 7E-06 53.5 3.7 23 200-222 25-47 (245)
366 1rj9_A FTSY, signal recognitio 89.3 0.19 6.3E-06 55.4 3.4 24 199-222 101-124 (304)
367 1sq5_A Pantothenate kinase; P- 89.2 0.35 1.2E-05 53.6 5.6 24 199-222 79-102 (308)
368 1fx0_B ATP synthase beta chain 89.2 0.62 2.1E-05 53.9 7.7 89 200-289 165-275 (498)
369 1e6c_A Shikimate kinase; phosp 89.2 0.14 4.6E-06 51.4 2.0 22 201-222 3-24 (173)
370 2plr_A DTMP kinase, probable t 89.2 0.19 6.4E-06 52.4 3.2 24 200-223 4-27 (213)
371 1uj2_A Uridine-cytidine kinase 89.2 0.19 6.4E-06 54.0 3.3 24 199-222 21-44 (252)
372 2bbw_A Adenylate kinase 4, AK4 89.1 0.18 6.1E-06 54.0 3.1 23 200-222 27-49 (246)
373 1g41_A Heat shock protein HSLU 89.1 0.19 6.6E-06 57.9 3.5 51 172-222 15-72 (444)
374 1z6g_A Guanylate kinase; struc 89.1 0.16 5.4E-06 53.1 2.5 23 200-222 23-45 (218)
375 2yhs_A FTSY, cell division pro 88.9 0.8 2.7E-05 53.2 8.4 43 198-243 291-333 (503)
376 2bwj_A Adenylate kinase 5; pho 88.9 0.16 5.6E-06 52.2 2.5 22 201-222 13-34 (199)
377 3llm_A ATP-dependent RNA helic 88.9 0.53 1.8E-05 49.8 6.6 90 201-291 77-187 (235)
378 2pt5_A Shikimate kinase, SK; a 88.9 0.18 6.3E-06 50.1 2.8 21 202-222 2-22 (168)
379 1s96_A Guanylate kinase, GMP k 88.8 0.2 6.9E-06 52.2 3.1 24 199-222 15-38 (219)
380 4e22_A Cytidylate kinase; P-lo 88.8 0.2 6.9E-06 53.7 3.2 23 200-222 27-49 (252)
381 1aky_A Adenylate kinase; ATP:A 88.5 0.19 6.7E-06 52.6 2.8 23 200-222 4-26 (220)
382 2vli_A Antibiotic resistance p 88.5 0.14 4.8E-06 51.9 1.6 23 200-222 5-27 (183)
383 2f6r_A COA synthase, bifunctio 88.5 0.24 8.4E-06 54.0 3.6 24 199-222 74-97 (281)
384 3p32_A Probable GTPase RV1496/ 88.4 0.42 1.4E-05 54.2 5.7 37 181-222 65-101 (355)
385 2z0h_A DTMP kinase, thymidylat 88.4 0.42 1.4E-05 48.9 5.3 21 202-222 2-22 (197)
386 2pbr_A DTMP kinase, thymidylat 88.4 0.2 7E-06 51.2 2.8 21 202-222 2-22 (195)
387 2f1r_A Molybdopterin-guanine d 88.4 0.18 6E-06 50.2 2.2 22 201-222 3-24 (171)
388 3b85_A Phosphate starvation-in 88.2 0.32 1.1E-05 50.1 4.1 22 201-222 23-44 (208)
389 3k1j_A LON protease, ATP-depen 88.1 0.28 9.6E-06 60.2 4.3 43 172-223 41-83 (604)
390 1nn5_A Similar to deoxythymidy 88.1 0.22 7.5E-06 51.9 2.9 23 200-222 9-31 (215)
391 3cmu_A Protein RECA, recombina 88.0 0.71 2.4E-05 63.0 8.2 85 199-290 1426-1515(2050)
392 1pgv_A TMD-1, tropomodulin TMD 88.0 0.3 1E-05 49.4 3.5 113 553-669 39-169 (197)
393 2wwf_A Thymidilate kinase, put 87.9 0.24 8.2E-06 51.5 3.0 24 200-223 10-33 (212)
394 3e1s_A Exodeoxyribonuclease V, 87.9 1.1 3.7E-05 54.3 9.1 105 201-319 205-315 (574)
395 1m7g_A Adenylylsulfate kinase; 87.8 0.27 9.3E-06 51.1 3.3 23 200-222 25-47 (211)
396 2j37_W Signal recognition part 87.8 2.3 7.8E-05 50.1 11.4 42 181-222 80-123 (504)
397 1zd8_A GTP:AMP phosphotransfer 87.7 0.22 7.5E-06 52.5 2.5 23 200-222 7-29 (227)
398 3b9q_A Chloroplast SRP recepto 87.7 0.29 9.8E-06 53.8 3.5 23 200-222 100-122 (302)
399 3zvl_A Bifunctional polynucleo 87.6 0.81 2.8E-05 53.1 7.5 25 199-223 257-281 (416)
400 2v54_A DTMP kinase, thymidylat 87.5 0.26 8.9E-06 50.9 3.0 24 200-223 4-27 (204)
401 2i3b_A HCR-ntpase, human cance 87.5 0.24 8.2E-06 50.2 2.5 22 202-223 3-24 (189)
402 1gtv_A TMK, thymidylate kinase 87.4 0.15 5.2E-06 53.1 1.1 21 202-222 2-22 (214)
403 3nwj_A ATSK2; P loop, shikimat 87.4 0.21 7.3E-06 53.1 2.2 22 201-222 49-70 (250)
404 1vht_A Dephospho-COA kinase; s 87.3 0.33 1.1E-05 50.7 3.6 23 200-222 4-26 (218)
405 3fb4_A Adenylate kinase; psych 87.3 0.26 9E-06 51.4 2.8 21 202-222 2-22 (216)
406 3a8t_A Adenylate isopentenyltr 87.3 0.34 1.2E-05 53.3 3.8 23 200-222 40-62 (339)
407 2qe7_A ATP synthase subunit al 87.2 0.6 2.1E-05 54.0 5.9 86 200-289 162-263 (502)
408 3tif_A Uncharacterized ABC tra 87.2 0.3 1E-05 51.6 3.2 23 200-222 31-53 (235)
409 2q6t_A DNAB replication FORK h 87.1 1.6 5.4E-05 51.2 9.7 53 200-255 200-252 (444)
410 3d3q_A TRNA delta(2)-isopenten 87.0 0.32 1.1E-05 53.8 3.4 22 201-222 8-29 (340)
411 1zak_A Adenylate kinase; ATP:A 87.0 0.23 8E-06 52.1 2.3 23 200-222 5-27 (222)
412 3dl0_A Adenylate kinase; phosp 87.0 0.28 9.6E-06 51.2 2.8 21 202-222 2-22 (216)
413 2onk_A Molybdate/tungstate ABC 86.9 0.3 1E-05 51.7 3.0 22 201-222 25-46 (240)
414 3lnc_A Guanylate kinase, GMP k 86.9 0.22 7.5E-06 52.7 2.0 23 200-222 27-50 (231)
415 3vr4_D V-type sodium ATPase su 86.9 0.47 1.6E-05 54.2 4.7 87 201-289 152-257 (465)
416 1np6_A Molybdopterin-guanine d 86.8 0.33 1.1E-05 48.3 3.1 25 199-223 5-29 (174)
417 2r9v_A ATP synthase subunit al 86.7 0.78 2.7E-05 53.1 6.4 86 200-289 175-276 (515)
418 3bgw_A DNAB-like replicative h 86.6 1.3 4.4E-05 51.7 8.5 51 200-254 197-247 (444)
419 3gqb_B V-type ATP synthase bet 86.6 0.39 1.3E-05 54.9 3.9 90 200-289 147-260 (464)
420 2ehv_A Hypothetical protein PH 86.6 0.31 1.1E-05 52.2 3.1 23 200-222 30-52 (251)
421 3b5x_A Lipid A export ATP-bind 86.6 2.5 8.5E-05 51.5 11.4 23 200-222 369-391 (582)
422 1cr0_A DNA primase/helicase; R 86.6 0.7 2.4E-05 50.9 6.0 50 200-253 35-85 (296)
423 3gfo_A Cobalt import ATP-bindi 86.5 0.47 1.6E-05 51.3 4.3 23 200-222 34-56 (275)
424 3r20_A Cytidylate kinase; stru 86.4 0.35 1.2E-05 50.6 3.1 23 200-222 9-31 (233)
425 2pcj_A ABC transporter, lipopr 86.4 0.32 1.1E-05 50.9 2.9 23 200-222 30-52 (224)
426 1b0u_A Histidine permease; ABC 86.4 0.34 1.2E-05 52.1 3.1 23 200-222 32-54 (262)
427 3ake_A Cytidylate kinase; CMP 86.3 0.32 1.1E-05 50.4 2.8 21 202-222 4-24 (208)
428 4eaq_A DTMP kinase, thymidylat 86.3 0.57 2E-05 49.2 4.8 25 199-223 25-49 (229)
429 3dzd_A Transcriptional regulat 86.2 0.29 1E-05 55.7 2.7 46 173-223 130-175 (368)
430 3exa_A TRNA delta(2)-isopenten 86.2 0.37 1.3E-05 52.3 3.2 23 200-222 3-25 (322)
431 3end_A Light-independent proto 86.1 0.59 2E-05 51.8 5.1 43 198-242 39-81 (307)
432 1mv5_A LMRA, multidrug resista 86.1 0.41 1.4E-05 50.9 3.6 23 200-222 28-50 (243)
433 2olj_A Amino acid ABC transpor 86.0 0.36 1.2E-05 51.8 3.1 23 200-222 50-72 (263)
434 3hjn_A DTMP kinase, thymidylat 86.0 0.9 3.1E-05 46.3 6.0 49 202-252 2-50 (197)
435 2og2_A Putative signal recogni 86.0 0.4 1.4E-05 53.9 3.5 24 199-222 156-179 (359)
436 3be4_A Adenylate kinase; malar 86.0 0.27 9.4E-06 51.3 2.1 22 201-222 6-27 (217)
437 4g1u_C Hemin import ATP-bindin 86.0 0.56 1.9E-05 50.4 4.6 23 200-222 37-59 (266)
438 1q57_A DNA primase/helicase; d 86.0 2 6.9E-05 51.3 10.0 53 200-255 242-294 (503)
439 1yrb_A ATP(GTP)binding protein 86.0 0.44 1.5E-05 51.5 3.8 25 198-222 12-36 (262)
440 3crm_A TRNA delta(2)-isopenten 85.8 0.37 1.2E-05 53.0 3.0 23 200-222 5-27 (323)
441 1vpl_A ABC transporter, ATP-bi 85.6 0.39 1.4E-05 51.3 3.1 23 200-222 41-63 (256)
442 3cmu_A Protein RECA, recombina 85.4 1.3 4.4E-05 60.6 8.5 86 199-291 382-472 (2050)
443 1sgw_A Putative ABC transporte 85.3 0.35 1.2E-05 50.0 2.5 23 200-222 35-57 (214)
444 2xb4_A Adenylate kinase; ATP-b 85.2 0.38 1.3E-05 50.4 2.8 21 202-222 2-22 (223)
445 2ghi_A Transport protein; mult 85.2 0.42 1.4E-05 51.3 3.2 23 200-222 46-68 (260)
446 2zu0_C Probable ATP-dependent 85.2 0.43 1.5E-05 51.5 3.2 23 200-222 46-68 (267)
447 1ji0_A ABC transporter; ATP bi 85.2 0.41 1.4E-05 50.7 3.1 23 200-222 32-54 (240)
448 3foz_A TRNA delta(2)-isopenten 85.1 0.49 1.7E-05 51.3 3.5 24 199-222 9-32 (316)
449 2ixe_A Antigen peptide transpo 85.1 0.43 1.5E-05 51.6 3.2 23 200-222 45-67 (271)
450 3mfy_A V-type ATP synthase alp 85.1 1.9 6.4E-05 50.3 8.5 47 200-250 227-274 (588)
451 1e4v_A Adenylate kinase; trans 85.1 0.38 1.3E-05 50.0 2.7 21 202-222 2-22 (214)
452 2vp4_A Deoxynucleoside kinase; 85.0 0.41 1.4E-05 50.5 3.0 25 198-222 18-42 (230)
453 1a7j_A Phosphoribulokinase; tr 85.0 0.23 7.7E-06 54.4 0.9 23 200-222 5-27 (290)
454 2wji_A Ferrous iron transport 85.0 0.53 1.8E-05 46.5 3.6 23 201-223 4-26 (165)
455 3sr0_A Adenylate kinase; phosp 85.0 0.41 1.4E-05 49.2 2.8 21 202-222 2-22 (206)
456 1g6h_A High-affinity branched- 85.0 0.42 1.5E-05 51.2 3.1 23 200-222 33-55 (257)
457 2zej_A Dardarin, leucine-rich 85.0 0.42 1.4E-05 48.3 2.9 22 202-223 4-25 (184)
458 1ak2_A Adenylate kinase isoenz 85.0 0.42 1.4E-05 50.6 3.0 23 200-222 16-38 (233)
459 2ff7_A Alpha-hemolysin translo 84.8 0.44 1.5E-05 50.7 3.1 23 200-222 35-57 (247)
460 2d2e_A SUFC protein; ABC-ATPas 84.8 0.45 1.5E-05 50.8 3.1 23 200-222 29-51 (250)
461 2v9p_A Replication protein E1; 84.8 0.44 1.5E-05 52.1 3.1 23 200-222 126-148 (305)
462 2yz2_A Putative ABC transporte 84.7 0.46 1.6E-05 51.2 3.2 23 200-222 33-55 (266)
463 2qmh_A HPR kinase/phosphorylas 84.6 0.49 1.7E-05 47.4 3.0 24 200-223 34-57 (205)
464 3vr4_A V-type sodium ATPase ca 84.6 1.6 5.6E-05 51.0 7.8 49 183-241 221-269 (600)
465 2c61_A A-type ATP synthase non 84.6 0.61 2.1E-05 53.7 4.2 90 200-289 152-258 (469)
466 2ck3_A ATP synthase subunit al 84.5 1.2 4E-05 51.7 6.6 90 200-289 162-271 (510)
467 4edh_A DTMP kinase, thymidylat 84.4 1.2 4E-05 46.0 6.0 24 200-223 6-29 (213)
468 2r8r_A Sensor protein; KDPD, P 84.4 1.1 3.7E-05 46.1 5.6 37 202-240 8-44 (228)
469 2qi9_C Vitamin B12 import ATP- 84.3 0.48 1.6E-05 50.4 3.0 23 200-222 26-48 (249)
470 1oix_A RAS-related protein RAB 84.3 0.48 1.6E-05 48.2 3.0 24 200-223 29-52 (191)
471 2wjg_A FEOB, ferrous iron tran 84.3 0.72 2.5E-05 46.6 4.4 25 199-223 6-30 (188)
472 1fx0_A ATP synthase alpha chai 84.2 0.87 3E-05 52.7 5.3 86 200-289 163-264 (507)
473 3nh6_A ATP-binding cassette SU 84.2 0.48 1.6E-05 52.0 3.0 23 200-222 80-102 (306)
474 1q3t_A Cytidylate kinase; nucl 84.2 0.51 1.8E-05 49.9 3.2 25 198-222 14-38 (236)
475 2fz4_A DNA repair protein RAD2 84.2 3.4 0.00012 43.5 9.7 94 203-304 111-216 (237)
476 2dr3_A UPF0273 protein PH0284; 84.1 0.57 2E-05 49.9 3.7 39 200-240 23-61 (247)
477 1ltq_A Polynucleotide kinase; 84.0 0.48 1.6E-05 52.4 3.1 22 201-222 3-24 (301)
478 2nq2_C Hypothetical ABC transp 84.0 0.5 1.7E-05 50.4 3.0 23 200-222 31-53 (253)
479 2ihy_A ABC transporter, ATP-bi 83.8 0.51 1.7E-05 51.2 3.0 23 200-222 47-69 (279)
480 1svm_A Large T antigen; AAA+ f 83.8 0.86 2.9E-05 51.6 5.0 23 200-222 169-191 (377)
481 2dyk_A GTP-binding protein; GT 83.7 0.58 2E-05 45.8 3.2 23 201-223 2-24 (161)
482 3cmw_A Protein RECA, recombina 83.7 1.3 4.5E-05 59.7 7.4 82 201-289 384-470 (1706)
483 2ged_A SR-beta, signal recogni 83.6 1 3.4E-05 45.8 5.1 25 199-223 47-71 (193)
484 1ny5_A Transcriptional regulat 83.5 2.5 8.7E-05 48.3 9.0 46 173-223 138-183 (387)
485 3ld9_A DTMP kinase, thymidylat 83.4 1.1 3.8E-05 46.4 5.3 25 199-223 20-44 (223)
486 1u0j_A DNA replication protein 83.4 0.91 3.1E-05 48.2 4.6 39 180-223 89-127 (267)
487 2f9l_A RAB11B, member RAS onco 83.3 0.54 1.8E-05 48.2 2.9 24 200-223 5-28 (199)
488 3oaa_A ATP synthase subunit al 83.2 2.9 9.8E-05 48.3 8.9 86 200-289 162-263 (513)
489 2xau_A PRE-mRNA-splicing facto 83.1 3 0.0001 52.5 10.1 69 179-256 97-165 (773)
490 2lkc_A Translation initiation 82.9 0.87 3E-05 45.4 4.2 25 199-223 7-31 (178)
491 3f9v_A Minichromosome maintena 82.7 0.44 1.5E-05 58.1 2.1 51 173-223 296-350 (595)
492 1tq4_A IIGP1, interferon-induc 82.6 0.7 2.4E-05 52.9 3.7 23 200-222 69-91 (413)
493 1nlf_A Regulatory protein REPA 82.5 0.6 2E-05 50.9 3.0 23 200-222 30-52 (279)
494 2bbs_A Cystic fibrosis transme 82.4 0.62 2.1E-05 50.7 3.0 24 200-223 64-87 (290)
495 2pjz_A Hypothetical protein ST 82.3 0.64 2.2E-05 49.8 3.0 22 201-222 31-52 (263)
496 2j9r_A Thymidine kinase; TK1, 82.2 1.3 4.5E-05 45.2 5.1 110 200-321 28-139 (214)
497 1cp2_A CP2, nitrogenase iron p 82.2 1 3.5E-05 48.8 4.7 39 201-241 2-40 (269)
498 2ocp_A DGK, deoxyguanosine kin 82.0 0.67 2.3E-05 49.2 3.1 24 200-223 2-25 (241)
499 2ce2_X GTPase HRAS; signaling 81.9 0.61 2.1E-05 45.8 2.6 22 202-223 5-26 (166)
500 2iw3_A Elongation factor 3A; a 81.8 4.9 0.00017 51.2 11.1 124 200-327 461-612 (986)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-47 Score=471.51 Aligned_cols=317 Identities=17% Similarity=0.226 Sum_probs=258.3
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc--CccccccccceEEEEeCCcc--CHHHHHHH
Q 040015 175 YGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN--DSRVDGRFDLKVWVCVSDQF--DVLRVTTT 250 (1399)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~ 250 (1399)
|||++++++|.++|.... +...+||+|+||||+||||||++||+ +.+++.+|+.++||++++.+ ++..+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 699999999999997652 24589999999999999999999998 67899999999999999885 88999999
Q ss_pred HHHHccCCCC-----C-CCcchHHHHHHHHHHhcCc-ceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhH
Q 040015 251 ILKSVTSKPA-----D-VDDDLNLLQVCLREKLAGK-KFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIA 323 (1399)
Q Consensus 251 i~~~l~~~~~-----~-~~~~~~~l~~~l~~~l~~~-r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 323 (1399)
|+.+++.... . ...+.+.++..+++.++++ ||||||||||+.+...|.. .+||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986532 1 1113567889999999996 9999999999853223432 1799999999999999
Q ss_pred HhcC-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHHHhh
Q 040015 324 ASMG-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDMLNR 402 (1399)
Q Consensus 324 ~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~ 402 (1399)
..++ ...+|++++|+.++||+||.++||+.. .++++++++++|+++|+|+||||+++|+.++.+ . .+|...+.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 8876 446799999999999999999997653 247888999999999999999999999999766 3 234444544
Q ss_pred hccCCCCCcchHHHHHHHhhcCCChhhhhhhh-----------hhccCCCCcccchHHHHHHHHHh--CCccccccchhH
Q 040015 403 NIWDLPHDESSILQTLGLSYHHLPPHLKQCFA-----------YCSVFPAGYEFDKEKLVLLWMAE--GFVQQSNAKKKL 469 (1399)
Q Consensus 403 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~ 469 (1399)
..+... ...+.+++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+.++
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 433221 245888899999999999999999 999999999999 8999999 999876545667
Q ss_pred HHHHHHHHHHHHhccccccccC-CCceEEehHHHHHHHHHhhccceE
Q 040015 470 EEVGREYFHELVSRSFFRQSVH-NSSLYVMHGLMKDLARFVSGEFCF 515 (1399)
Q Consensus 470 ~~~~~~~~~~L~~~~l~~~~~~-~~~~~~mH~lv~~~a~~~~~~~~~ 515 (1399)
+++++ ||++|+++||+++... ...+|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 9999999999998653 356899999999999999988765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-43 Score=456.07 Aligned_cols=337 Identities=15% Similarity=0.091 Sum_probs=176.2
Q ss_pred cCCCCCcceeeecccCCcccccccccccCC-ccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCC
Q 040015 1035 TGGHRSLTYMRICQISKLDCLVEGYFQHFT-ALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYEL 1113 (1399)
Q Consensus 1035 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 1113 (1399)
+..+++|++|++++|.....++.. +..++ +|+.|++++|.....++.......+++|++|++++|.....+|..+..+
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 334444455555444422222222 22333 4555555555433333332222224445555555555444444455555
Q ss_pred CCccEEEEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccc-ccC
Q 040015 1114 STLKVLRISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDK-LSG 1191 (1399)
Q Consensus 1114 ~~L~~L~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~ 1191 (1399)
++|++|++++|.....+| .+...++|+.|++++|.....+|..+. .+++|++|++++|.-...+|... -.+
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-------YVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-------GCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-------CCCCceEEEecCCcccCcCCHHHhcCC
Confidence 555555555543222222 122334555555555443334433321 24445555555543322333211 113
Q ss_pred CCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCcc
Q 040015 1192 TLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPN 1271 (1399)
Q Consensus 1192 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 1271 (1399)
+|+.|++++|.....+|.. +..+++|++|++++|...+.+|..+..+++|+.|++++|+....+|.
T Consensus 491 ~L~~L~L~~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKW--------------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp TCCEEECCSSCCCSCCCGG--------------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCEEEccCCccCCcCChH--------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 5555555554433344433 34455555555555555555555555555555555555554445554
Q ss_pred ccccCCCcceEeecC----------------------------------------------CCCCccCCCC-CCCCCcce
Q 040015 1272 GMYILTSLQEFSIHG----------------------------------------------CSSLMSFPEG-GLPPNLIS 1304 (1399)
Q Consensus 1272 ~~~~l~~L~~L~l~~----------------------------------------------c~~l~~l~~~-~~~~~L~~ 1304 (1399)
.+..+..+..+.+.. +..-..+|.. ...++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 444333332222111 1000011111 12457788
Q ss_pred EEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1305 LSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1305 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
|+++++ +++...+..+.+++.|+.|++++|.....+|..+..+++|+.|+|++|.....+|..+..+++|++|++++|+
T Consensus 637 LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 888774 5665666678888888888888888777888888888888888888866555788888888888888888887
Q ss_pred CCCCCCCCCC
Q 040015 1385 NLQTVPEEKP 1394 (1399)
Q Consensus 1385 ~l~~lp~~~~ 1394 (1399)
--+.+|+.+.
T Consensus 716 l~g~iP~~~~ 725 (768)
T 3rgz_A 716 LSGPIPEMGQ 725 (768)
T ss_dssp EEEECCSSSS
T ss_pred ccccCCCchh
Confidence 7777887653
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.1e-42 Score=442.98 Aligned_cols=634 Identities=16% Similarity=0.078 Sum_probs=362.8
Q ss_pred ccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccc-cccc--cccCCCCCcEEEccCCCCCCCcChhh-ccCC
Q 040015 582 ILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIK-QLPD--STGNLCNLQSIILLECYSLSKLPTDL-GNLT 657 (1399)
Q Consensus 582 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~-~lP~--~i~~L~~L~~L~L~~~~~~~~lP~~i-~~L~ 657 (1399)
.|.++++|++++++.+.+..+|+.|+.+++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .+++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 456788888888888887777788888888888888888877 5676 78888888888888886556666654 7888
Q ss_pred CCCEEEccCCcccccCcc----ccCCCCCCccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhcCCC
Q 040015 658 GLRHLRMSGSRLREMPMK----MYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANLKDK 733 (1399)
Q Consensus 658 ~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 733 (1399)
+|++|++++|.++..+.. ++++++|++|+...+. +.. . ..+..+
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------l~~---------------~-----------~~~~~l 199 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK------ISG---------------D-----------VDVSRC 199 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE------EES---------------C-----------CBCTTC
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc------ccc---------------c-----------CCcccC
Confidence 888888888887654432 4556666665432110 000 0 001233
Q ss_pred CCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCCCCh
Q 040015 734 KELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGSGNE 813 (1399)
Q Consensus 734 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 813 (1399)
++|+.|++++|...+
T Consensus 200 ~~L~~L~Ls~n~l~~----------------------------------------------------------------- 214 (768)
T 3rgz_A 200 VNLEFLDVSSNNFST----------------------------------------------------------------- 214 (768)
T ss_dssp TTCCEEECCSSCCCS-----------------------------------------------------------------
T ss_pred CcCCEEECcCCcCCC-----------------------------------------------------------------
Confidence 444455544443200
Q ss_pred hhHHhhhhcCCCCCCCCeEEEeecCCC-CCCcCcCCCCcCceeEEEEeCCCCCCCCCCCCCCCCccceecccCcCceEec
Q 040015 814 RVEMDVLEMLQPHENLKQLTINDYGGI-KFPGWIASPLFCNMTVLVLSNCRNCQFLPSLGRLPMLKDLTIEGMEGIKSVG 892 (1399)
Q Consensus 814 ~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~ 892 (1399)
..+.+..+++|+.|+++++... .+|.++. .+++|++|++++|.....+|.. .+++|++|++++|.....++
T Consensus 215 -----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 215 -----GIPFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp -----CCCBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCC
T ss_pred -----CCcccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccC
Confidence 0011233344444444444332 1222222 3444444444444433333322 34444444444443111111
Q ss_pred ccccCCCCCCCCCCCCcceeeeccCCcccccCcCCCCCCccccccceeccccCCcccccccCCCccceEEEecccccCcC
Q 040015 893 AEFYGDGSFPLLPFPSLETLKFENMSEWEEWTPSGTEGTEGFLHLQNIEILNCPKLREFSHHFPSLKKMTIYGCEKLEQG 972 (1399)
Q Consensus 893 ~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~~l~~~ 972 (1399)
..+ ...+++|+.|++++|.--..++. .+
T Consensus 287 ~~~-----------------------------------~~~~~~L~~L~Ls~n~l~~~~p~-----------------~~ 314 (768)
T 3rgz_A 287 DFL-----------------------------------SGACDTLTGLDLSGNHFYGAVPP-----------------FF 314 (768)
T ss_dssp CCS-----------------------------------CTTCTTCSEEECCSSEEEECCCG-----------------GG
T ss_pred HHH-----------------------------------HhhcCcCCEEECcCCcCCCccch-----------------HH
Confidence 111 01123333333333322111111 12
Q ss_pred CCCCCccEEEEccCCCcccCC----CCCCCccEEEEcCCCCccCCCC----CC-cceeEeeccCCCc--cccccCC--CC
Q 040015 973 SEFPCLLELSILMCPNLVELP----TFLPSLKTLEIDGCQKLAALPK----LP-SILELELNNCDGK--VLHSTGG--HR 1039 (1399)
Q Consensus 973 ~~~~~L~~L~l~~~~~l~~l~----~~l~~L~~L~i~~c~~l~~l~~----l~-~L~~L~l~~~~~~--~~~~~~~--~~ 1039 (1399)
..+++|+.|++.+|.....+| ..+++|++|++++|.....+|. ++ +|+.|++++|... .+..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 356677777777765443444 3478888888888865444442 33 7777777776543 2233333 66
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEE
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVL 1119 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 1119 (1399)
+|++|++++|.....++ ..+.++++|+.|++++|......+.. +..+++|++|++++|.....+|..+..+++|++|
T Consensus 395 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp CCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CccEEECCCCccccccC-HHHhcCCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 77777777776433333 34677777777777777654445443 3367777777777777666777777777777777
Q ss_pred EEecCCCCcccCC-CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc-cCCCCeEe
Q 040015 1120 RISNCPSLVAFPE-MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL-SGTLKVLE 1197 (1399)
Q Consensus 1120 ~ls~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~ 1197 (1399)
++++|.....+|. +..+++|+.|++++|.....+|..+. .+++|++|++++|.-...+|.... .++|+.|+
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 7777665545552 34457777777777765556665442 466677777777544334443211 23677777
Q ss_pred eecCCCCCccCcccc-ccccccceeccccCCCCCCceEeecCCC-------------CCcccCCCCCCCCCccceecccc
Q 040015 1198 IENCGNLQSLPEQMI-CSSLENLKVAGCLHNLAFLDHLEIDDCP-------------LLQSFPEPCLPTSMLRYARISNC 1263 (1399)
Q Consensus 1198 l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~l~~c 1263 (1399)
+++|+....+|.... +..+..+.+..+ .+...+.++. ..+..+..+..++.+..++++.+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAG------KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCS------CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCCccCCcCChHHhcccchhhhhcccc------ccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 777665556655432 111222111110 0001111100 00011111122233333444443
Q ss_pred cCCccCccccccCCCcceEeecCCCCCccCCCC-CCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC
Q 040015 1264 QNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEG-GLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP 1342 (1399)
Q Consensus 1264 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 1342 (1399)
..-..+|..+..+++|+.|++++|..-..+|.. +..++|+.|++++ +.++...+..+.++++|++|+|++|+....+|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 333445556666777777777775433355532 2356677777766 35565566678999999999999999888999
Q ss_pred CCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCCCCCCCC
Q 040015 1343 KGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDNLQTVP 1390 (1399)
Q Consensus 1343 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 1390 (1399)
..+..+++|+.|++++|+..+.||. ...+.++....+.+||.+...|
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTT
T ss_pred hHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCC
Confidence 9999999999999999876677874 3456667777788888776554
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.4e-39 Score=390.31 Aligned_cols=285 Identities=19% Similarity=0.240 Sum_probs=231.3
Q ss_pred cccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccc-eEEEEeCCccCHHHHHHHHH
Q 040015 174 VYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDL-KVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 174 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 252 (1399)
.|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 130 ~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4999999999999998643 3789999999999999999999988788899986 99999999999888888877
Q ss_pred HHccCCC---C---C----CCcchHHHHHHHHHHh---cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 253 KSVTSKP---A---D----VDDDLNLLQVCLREKL---AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 253 ~~l~~~~---~---~----~~~~~~~l~~~l~~~l---~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
+.+.... . + ...+.+.+...+++.+ .++|+||||||||+. +.|+.+ + .||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7543210 0 1 1113456677777766 689999999999983 567654 2 68999999999
Q ss_pred hhhHHhcCccceEeCC------CCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCC-C
Q 040015 320 SSIAASMGTVAAHHLE------CLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSRE-D 392 (1399)
Q Consensus 320 ~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~ 392 (1399)
+.++..+.....+.++ +|+.+|||+||.+.. +.. . +++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998755444456676 999999999999883 321 1 1233343 9999999999999999884 5
Q ss_pred hHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhh-hhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHHH
Q 040015 393 KGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHL-KQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLEE 471 (1399)
Q Consensus 393 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 471 (1399)
.++|... ....+..+|.+||+.||+++ |+||+|||+||+++.|+.+.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 7888763 23679999999999999999 99999999999999999999999998887 13
Q ss_pred HHHHHHHHHHhccccccccCCCceEEehHHHHHHH
Q 040015 472 VGREYFHELVSRSFFRQSVHNSSLYVMHGLMKDLA 506 (1399)
Q Consensus 472 ~~~~~~~~L~~~~l~~~~~~~~~~~~mH~lv~~~a 506 (1399)
.++.++++|+++||++... +..+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 4788999999999999852 457899999999965
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-36 Score=385.47 Aligned_cols=328 Identities=16% Similarity=0.083 Sum_probs=203.5
Q ss_pred cCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhh-----hhhh--hhcccccccccEEEeecCCCcccch
Q 040015 1035 TGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELM-----TLSN--KIGLRSLLSLQRLEISECPYFKELP 1107 (1399)
Q Consensus 1035 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~~~~--~~~~~~l~~L~~L~L~~~~~~~~l~ 1107 (1399)
+..+++|++|++++|. +..+....|.++++|+.|++++|.... .++. ...+..+++|++|++++|......+
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred ccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 4455666666666654 334444456667777777776553211 1111 1134467788888888887666666
Q ss_pred hhhhCCCCccEEEEecCCC-CcccCCCCC----CCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCC
Q 040015 1108 EKFYELSTLKVLRISNCPS-LVAFPEMGL----PSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALV 1182 (1399)
Q Consensus 1108 ~~~~~l~~L~~L~ls~c~~-l~~~~~~~~----~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 1182 (1399)
..+..+++|++|++++|.. +..++...+ .++|+.|++++|......+..+ ..+++|++|+++++.-..
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-------SWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-------TTCTTCCEEECCSSCCEE
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-------hCCCCCCEEeCCCCcCcc
Confidence 6777888888888887642 333333222 1567788887765443333222 246778888887754333
Q ss_pred ccCcccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCC--cccCCCCCCCCCccce
Q 040015 1183 SLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLL--QSFPEPCLPTSMLRYA 1258 (1399)
Q Consensus 1183 ~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L 1258 (1399)
.++...+ .++|++|++++|. +..++... |..+++|++|++++|... +.+|..+..+++|+.|
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNK-YLQLTRNS-------------FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCS-EEECCTTT-------------TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred ccCcccccCcccccEEecCCCC-cceeChhh-------------hhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 3443222 2477888887754 44443322 567778888888877653 4567777778888888
Q ss_pred ecccccCCccCccccccCCCcceEeecCCCCCccCCCC----------CCCCCcceEEeccCCCCCCCcccccccCCCcc
Q 040015 1259 RISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEG----------GLPPNLISLSILDCENLKPSSEWGLHRLTCLA 1328 (1399)
Q Consensus 1259 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~----------~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~ 1328 (1399)
++++|......|..+..+++|++|++++| .++.++.. ...++|+.|+++++ .++.++...|..+++|+
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELK 563 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcc
Confidence 88876543333344677888888888775 45544221 12467788888763 56667766778888888
Q ss_pred EEEEcCCCCccccCC-CCCCCCCcceEEcCCCCCCCcccc-ccC-CCCCcCceeccCCCCCCC
Q 040015 1329 DFSFGGCQGLVSFPK-GWFLPKNLSSLYLERLPNLKSLPN-GLK-NLKYLETLEIWECDNLQT 1388 (1399)
Q Consensus 1329 ~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~-~~~-~l~~L~~L~l~~c~~l~~ 1388 (1399)
+|++++|... .+|. .|..+++|+.|++++| .++.++. .+. .+++|++|++++||-...
T Consensus 564 ~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 564 IIDLGLNNLN-TLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred eeECCCCCCC-cCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 8888775543 4443 4567788888888884 5777763 344 577888888887765443
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-36 Score=417.60 Aligned_cols=312 Identities=23% Similarity=0.305 Sum_probs=250.0
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc-cccc-cceEEEEeCCcc--CHH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV-DGRF-DLKVWVCVSDQF--DVL 245 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~--~~~ 245 (1399)
..+.||||++++++|.++|.... ...++|+|+||||+||||||+++|++.++ +.+| +.++||++++.. +..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 45679999999999999997543 35799999999999999999999997543 4555 677899998854 344
Q ss_pred HHHHHHHHHccCCCC---CCCcchHHHHHHHHHHhcCc--ceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh
Q 040015 246 RVTTTILKSVTSKPA---DVDDDLNLLQVCLREKLAGK--KFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~---~~~~~~~~l~~~l~~~l~~~--r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
..+..++..+..... ....+.+.+...++..+.++ ||||||||||+. +.|+.+ .+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 557777777765432 22335788899999999877 999999999874 344443 5789999999999
Q ss_pred hhHHh-cCccceEeCCC-CCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHH
Q 040015 321 SIAAS-MGTVAAHHLEC-LAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYD 398 (1399)
Q Consensus 321 ~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~ 398 (1399)
.++.. ++....+++++ |++++|++||...++.. .+..++++++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 45667899996 99999999999988432 233445799999999999999999999999875 35776
Q ss_pred HHhhhccCC--------CCCcchHHHHHHHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhHH
Q 040015 399 MLNRNIWDL--------PHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKLE 470 (1399)
Q Consensus 399 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 470 (1399)
.++...... ......+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------H
Confidence 665542221 11125699999999999999999999999999999999999999999543 3
Q ss_pred HHHHHHHHHHHhccccccccC-CCceEEehHHHHHHHHHhhccce
Q 040015 471 EVGREYFHELVSRSFFRQSVH-NSSLYVMHGLMKDLARFVSGEFC 514 (1399)
Q Consensus 471 ~~~~~~~~~L~~~~l~~~~~~-~~~~~~mH~lv~~~a~~~~~~~~ 514 (1399)
+.+++++++|+++||++.... ...+|+|||+||++|+..+.++.
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 668899999999999997643 23469999999999999987753
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-35 Score=375.84 Aligned_cols=275 Identities=15% Similarity=0.091 Sum_probs=142.2
Q ss_pred cccceeeeeeeccccccchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCc-ccC
Q 040015 529 FDKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPD-SVG 607 (1399)
Q Consensus 529 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~ 607 (1399)
+..+|++.+..+..... ....|.++++|++|.+.++.. ..+++..|.++++|++|+|++|.++.+|. .|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCcc--------CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 34455555544332211 112345555555555554431 23344445555666666666665555543 455
Q ss_pred CCCCCcEEeccCCcccccc-ccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcc---ccCCCCCC
Q 040015 608 DLKHLRYLDLSRTAIKQLP-DSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK---MYKLKNLQ 683 (1399)
Q Consensus 608 ~L~~L~~L~Ls~n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~---i~~L~~L~ 683 (1399)
++++|++|+|++|.+..+| ..|+++++|++|++++|......|..++++++|++|++++|.++.++.. ...+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 5666666666666555554 3455566666666665533333344455566666666666555554432 11234444
Q ss_pred ccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhcCCCCCCceEEEEecCCCCCCCCCCChhHHHHHH
Q 040015 684 TLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANLKDKKELTQLVLQWSDDFGDSTNDGDEEEVFKVA 763 (1399)
Q Consensus 684 ~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 763 (1399)
+|+. .... ........+..+.+|+.+++..+... ...
T Consensus 175 ~L~L--------------------------~~n~----l~~~~~~~~~~l~~L~~L~l~~~~l~--------~~~----- 211 (680)
T 1ziw_A 175 KLEL--------------------------SSNQ----IKEFSPGCFHAIGRLFGLFLNNVQLG--------PSL----- 211 (680)
T ss_dssp EEEC--------------------------TTCC----CCCBCTTGGGGSSEECEEECTTCCCH--------HHH-----
T ss_pred EEEC--------------------------CCCc----ccccChhhhhhhhhhhhhhccccccC--------hhh-----
Confidence 4432 1110 00111223444566666666443320 000
Q ss_pred HhhccccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCCCChhhHHhhhhcCCCCCCCCeEEEeecCCCCC-
Q 040015 764 QLHRNRKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGSGNERVEMDVLEMLQPHENLKQLTINDYGGIKF- 842 (1399)
Q Consensus 764 ~~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~- 842 (1399)
.......+ ..++|+.|.++++.....
T Consensus 212 ----------------------------------------------------~~~~~~~l-~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 212 ----------------------------------------------------TEKLCLEL-ANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp ----------------------------------------------------HHHHHHHH-TTSCCCEEECTTSCCCEEC
T ss_pred ----------------------------------------------------HHHHHHHh-hhccccEEEccCCcccccC
Confidence 00000011 236788888887765543
Q ss_pred CcCcCCCCcCceeEEEEeCCCCCCCCC-CCCCCCCccceecccCcCceEecccccCCCCCCCCCCCCcceeeecc
Q 040015 843 PGWIASPLFCNMTVLVLSNCRNCQFLP-SLGRLPMLKDLTIEGMEGIKSVGAEFYGDGSFPLLPFPSLETLKFEN 916 (1399)
Q Consensus 843 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~f~~L~~L~l~~ 916 (1399)
|.++..-..++|+.|++++|......+ .++.+++|++|++++|......+..+ ..+++|+.|++.+
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--------HGLFNVRYLNLKR 305 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--------TTCTTCCEEECTT
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh--------cCCCCccEEeccc
Confidence 344432122459999999998655444 58899999999999986433332222 3367777777764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-34 Score=362.02 Aligned_cols=293 Identities=16% Similarity=0.135 Sum_probs=151.0
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEE
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVL 1119 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 1119 (1399)
+|+.|++++|. +..++...|..+++|+.|++++|. ++.+|.. +..+++|++|++++|......|..+..+++|++|
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 45555555554 444555556666777777777664 3344443 3366777777777776555555666677777777
Q ss_pred EEecCCCCcccCC--CCCCCCcceEEEcCCCccccc--hhhhccccccCcccCCcceEEecCCCCCCccCcccc--cCCC
Q 040015 1120 RISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFL--PEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL--SGTL 1193 (1399)
Q Consensus 1120 ~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L 1193 (1399)
++++|.....++. ....++|+.|++++|...... +..+ ..+++|++|++++| .+..++...+ .++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL-------RNLSHLQSLNLSYN-EPLSLKTEAFKECPQL 402 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT-------TTCTTCCEEECCSC-SCEEECTTTTTTCTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc-------ccCCCCCEEECCCC-cCCcCCHHHhcCCccC
Confidence 7777654444442 334466666666665432211 1111 23555666666553 2222222111 1356
Q ss_pred CeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCcc---Cc
Q 040015 1194 KVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKF---LP 1270 (1399)
Q Consensus 1194 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---lp 1270 (1399)
+.|++++|......+... +.++++|++|++++|......|..+..+++|++|++++|..... .+
T Consensus 403 ~~L~l~~n~l~~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSP-------------FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp SEEECTTCCEECCTTCCT-------------TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CeEECCCCcCCCcccchh-------------hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 666666543222222211 45566666666666665555555566666666666666554331 12
Q ss_pred cccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCC
Q 040015 1271 NGMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLP 1348 (1399)
Q Consensus 1271 ~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 1348 (1399)
..+..+++|+.|++++| .++.++... ..++|+.|++++| +++...+..+.+++.| .|++++|......|..+..+
T Consensus 470 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp CGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred hhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 34556666666666665 344333221 1344555555442 3444444445555555 55555544433333334444
Q ss_pred CCcceEEcCCCC
Q 040015 1349 KNLSSLYLERLP 1360 (1399)
Q Consensus 1349 ~~L~~L~l~~~~ 1360 (1399)
++|+.|++++|+
T Consensus 547 ~~L~~L~l~~N~ 558 (606)
T 3t6q_A 547 SQQRTINLRQNP 558 (606)
T ss_dssp HTSSEEECTTCC
T ss_pred CCCCEEeCCCCC
Confidence 555555555543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-34 Score=361.74 Aligned_cols=249 Identities=14% Similarity=0.046 Sum_probs=136.3
Q ss_pred ccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCccc--chhhhh
Q 040015 1034 STGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKE--LPEKFY 1111 (1399)
Q Consensus 1034 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~--l~~~~~ 1111 (1399)
.+..+++|+.|++++|.. ..++ . + .+++|+.|++++|...... .+..+++|++|++++|..... .|..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~-~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-T-L-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-C-C-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-cccc-c-C-CCCccceeeccCCcCccch----hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 445556666666666664 4454 2 3 6777777777777544333 234677777777777764333 256677
Q ss_pred CCCCccEEEEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccccc
Q 040015 1112 ELSTLKVLRISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLS 1190 (1399)
Q Consensus 1112 ~l~~L~~L~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 1190 (1399)
.+++|++|++++|. ++.+| .+...++|+.|++++|......+.
T Consensus 374 ~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------------- 417 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEF----------------------------------- 417 (606)
T ss_dssp CCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTT-----------------------------------
T ss_pred cCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccCh-----------------------------------
Confidence 77777777777754 33333 122223333333333321111110
Q ss_pred CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCc-cC
Q 040015 1191 GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLK-FL 1269 (1399)
Q Consensus 1191 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l 1269 (1399)
.. +.++++|++|++++|......|..+..+++|++|++++|.... .+
T Consensus 418 -------------------~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 418 -------------------SA-------------FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp -------------------TT-------------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -------------------hh-------------hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch
Confidence 00 3344555555555555444444445555555555555544333 13
Q ss_pred ccccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCC
Q 040015 1270 PNGMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFL 1347 (1399)
Q Consensus 1270 p~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 1347 (1399)
|..+..+++|+.|++++| .++.++... ..++|+.|++++| .++...+..+..+++|++|++++|. +..+|..+..
T Consensus 466 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~ 542 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQH 542 (606)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGG
T ss_pred HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhh
Confidence 444555555555555554 333332221 1344455555443 3444445567788889999998875 5577877766
Q ss_pred CC-CcceEEcCCCCC
Q 040015 1348 PK-NLSSLYLERLPN 1361 (1399)
Q Consensus 1348 l~-~L~~L~l~~~~~ 1361 (1399)
++ +|+.|++++|+.
T Consensus 543 l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCTTCCEEECCSCCC
T ss_pred hcccCcEEEccCCCc
Confidence 65 589999988663
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-33 Score=354.36 Aligned_cols=123 Identities=21% Similarity=0.321 Sum_probs=69.6
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccc-cccccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQL-PDSTGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L 632 (1399)
+.++.|.+.++.. ..+++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.+..+ |.+|+++
T Consensus 32 ~~l~~L~Ls~n~l--------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCCc--------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 4455555555432 334444556666666666666666655 45566666666666666666655 5556666
Q ss_pred CCCcEEEccCCCCCCCcC-hhhccCCCCCEEEccCCccc--ccCccccCCCCCCccC
Q 040015 633 CNLQSIILLECYSLSKLP-TDLGNLTGLRHLRMSGSRLR--EMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~ 686 (1399)
++|++|++++| .+..+| ..|+++++|++|++++|.+. .+|..++++++|++|+
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 66666666666 333333 44666666666666666655 2455555555555554
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-33 Score=353.65 Aligned_cols=108 Identities=20% Similarity=0.308 Sum_probs=85.0
Q ss_pred ccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChhh
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTDL 653 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~i 653 (1399)
..+|..+ ...+++|+|++|.|+.+ |..|+++++|++|+|++|.+..+ |.+|+++++|++|++++|......|..|
T Consensus 25 ~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 25 NEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred ccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 3455544 24689999999999987 77899999999999999998866 6788999999999999985555557789
Q ss_pred ccCCCCCEEEccCCccccc-CccccCCCCCCccC
Q 040015 654 GNLTGLRHLRMSGSRLREM-PMKMYKLKNLQTLS 686 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~ 686 (1399)
+++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 9999999999999988876 34466666666554
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=354.05 Aligned_cols=306 Identities=23% Similarity=0.297 Sum_probs=235.1
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc-cccc-cceEEEEeCCccCHHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV-DGRF-DLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 248 (1399)
.+.||||++++++|.++|.... ...++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 4569999999999999997542 34789999999999999999999997655 7889 58999999775 333333
Q ss_pred HH---HHHHccCCC---CCCCcchHHHHHHHHHHhcC--cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh
Q 040015 249 TT---ILKSVTSKP---ADVDDDLNLLQVCLREKLAG--KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 249 ~~---i~~~l~~~~---~~~~~~~~~l~~~l~~~l~~--~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
.. ++..++... .....+.+.+...++..+.+ +++||||||+|+. ..++ .+ ..|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCc
Confidence 33 344554211 12223467788888888876 7899999999863 2332 22 5689999999999
Q ss_pred hhHHhcCccceEeC---CCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHH
Q 040015 321 SIAASMGTVAAHHL---ECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWY 397 (1399)
Q Consensus 321 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~ 397 (1399)
.++..+. ...+++ ++|+.+|+++||...++.. .+...+.+++|+++|+|+||||+++|+.++.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 9887654 234444 5899999999999988642 122235689999999999999999999998874 3687
Q ss_pred HHHhhhccCC--------CCCcchHHHHHHHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCccccccchhH
Q 040015 398 DMLNRNIWDL--------PHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNAKKKL 469 (1399)
Q Consensus 398 ~~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 469 (1399)
..++...... ......+..++.+||+.||++.|.||++||+||+|+.|+.+.++..|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 7766543221 12235799999999999999999999999999999999999999999432
Q ss_pred HHHHHHHHHHHHhccccccccC-CCceEEehHHHHHHHHHhhc
Q 040015 470 EEVGREYFHELVSRSFFRQSVH-NSSLYVMHGLMKDLARFVSG 511 (1399)
Q Consensus 470 ~~~~~~~~~~L~~~~l~~~~~~-~~~~~~mH~lv~~~a~~~~~ 511 (1399)
.+.+..++++|+++||++.... ...+|+||++||++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2457889999999999986542 34589999999999998743
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-31 Score=344.49 Aligned_cols=264 Identities=15% Similarity=0.127 Sum_probs=150.6
Q ss_pred CCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCC
Q 040015 1036 GGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELST 1115 (1399)
Q Consensus 1036 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~ 1115 (1399)
..+++|+.|++++|. +..++...|.++++|+.|++++|......+. .+..+++|++|++++|......+..+..+++
T Consensus 287 ~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp SSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSC--SCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHH--HhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 334444444444443 3333334455555555555555543222122 2335556666666666543333344555666
Q ss_pred ccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcc----cccC
Q 040015 1116 LKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRD----KLSG 1191 (1399)
Q Consensus 1116 L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~ 1191 (1399)
|+.|++++| .++.++. .++|+.|++++|. +..+|.. ..+++.|++++ +.+..++.. .+ +
T Consensus 364 L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N~-l~~l~~~----------~~~l~~L~ls~-N~l~~l~~~~~~~~l-~ 426 (844)
T 3j0a_A 364 LQTLDLRDN-ALTTIHF---IPSIPDIFLSGNK-LVTLPKI----------NLTANLIHLSE-NRLENLDILYFLLRV-P 426 (844)
T ss_dssp CCEEEEETC-CSCCCSS---CCSCSEEEEESCC-CCCCCCC----------CTTCCEEECCS-CCCCSSTTHHHHTTC-T
T ss_pred CCEEECCCC-CCCcccC---CCCcchhccCCCC-ccccccc----------ccccceeeccc-CccccCchhhhhhcC-C
Confidence 666666654 2333322 4556666665543 2333321 23356666665 334443321 22 3
Q ss_pred CCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCC-----cccCCCCCCCCCccceecccccCC
Q 040015 1192 TLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLL-----QSFPEPCLPTSMLRYARISNCQNL 1266 (1399)
Q Consensus 1192 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~c~~l 1266 (1399)
+|+.|++++|. +..++.... +..+++|++|++++|... +..+..+..+++|+.|+|++|...
T Consensus 427 ~L~~L~Ls~N~-l~~~~~~~~------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 427 HLQILILNQNR-FSSCSGDQT------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp TCCEEEEESCC-CCCCCSSSS------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccceeeCCCCc-ccccccccc------------cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 77777777743 443332211 345678888888887754 223455677888888999887644
Q ss_pred ccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCC
Q 040015 1267 KFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQG 1337 (1399)
Q Consensus 1267 ~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~ 1337 (1399)
...|..+..+++|+.|++++| .++.+|...++++|+.|++++ ++++...+..+ ++|+.|++++|+.
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~-N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR-NQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEE-ECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred ccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCC-CcCCCCChhHh---CCcCEEEecCCCc
Confidence 444555678889999999885 788888777778888888877 45565555443 4778888887653
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=344.03 Aligned_cols=285 Identities=17% Similarity=0.148 Sum_probs=208.8
Q ss_pred CCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCcc
Q 040015 1038 HRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLK 1117 (1399)
Q Consensus 1038 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 1117 (1399)
.++|+.|++++|. +..+....|..+++|+.|++++|......+. .+..+++|++|++++|......|..+..+++|+
T Consensus 265 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 265 RSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 3688888988887 5556666788999999999999975443333 345889999999999997666678899999999
Q ss_pred EEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCe
Q 040015 1118 VLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKV 1195 (1399)
Q Consensus 1118 ~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 1195 (1399)
.|++++| .++.++. +...++|+.|++++|. ++.++ .+++|+.|+++++ .+..+|.. ..+++.
T Consensus 342 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~-----------~~~~L~~L~l~~N-~l~~l~~~--~~~l~~ 405 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH-----------FIPSIPDIFLSGN-KLVTLPKI--NLTANL 405 (844)
T ss_dssp EEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCS-----------SCCSCSEEEEESC-CCCCCCCC--CTTCCE
T ss_pred EEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCccc-----------CCCCcchhccCCC-Cccccccc--ccccce
Confidence 9999997 4566653 4456899999999874 33333 2667889999884 56666643 347888
Q ss_pred EeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCC-CCCCCCCccceecccccCC-----ccC
Q 040015 1196 LEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPE-PCLPTSMLRYARISNCQNL-----KFL 1269 (1399)
Q Consensus 1196 L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l-----~~l 1269 (1399)
|++++ +.+..++.... +.++++|++|++++|......+. .+..+++|+.|++++|... ...
T Consensus 406 L~ls~-N~l~~l~~~~~------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 406 IHLSE-NRLENLDILYF------------LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp EECCS-CCCCSSTTHHH------------HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred eeccc-CccccCchhhh------------hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 88887 45666543322 45789999999999986544332 3455789999999997643 222
Q ss_pred ccccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCC
Q 040015 1270 PNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFL 1347 (1399)
Q Consensus 1270 p~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 1347 (1399)
+..+.++++|+.|++++| .++.++...+ .++|+.|+++++ +++.+++..+. ++|+.|++++|......|..+
T Consensus 473 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-- 546 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF-- 546 (844)
T ss_dssp SSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--
T ss_pred hhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCcCCCCChhHh--
Confidence 355778899999999986 7777776543 578888888874 67777666665 788888888877666666543
Q ss_pred CCCcceEEcCCCCC
Q 040015 1348 PKNLSSLYLERLPN 1361 (1399)
Q Consensus 1348 l~~L~~L~l~~~~~ 1361 (1399)
++|+.|++++|+.
T Consensus 547 -~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 547 -VSLSVLDITHNKF 559 (844)
T ss_dssp -SSCCEEEEEEECC
T ss_pred -CCcCEEEecCCCc
Confidence 5788888888663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.1e-30 Score=324.26 Aligned_cols=479 Identities=20% Similarity=0.186 Sum_probs=281.1
Q ss_pred ccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCcccccc-ccccCCCCCcEEEccCCCCCCCcCh-h
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLP-DSTGNLCNLQSIILLECYSLSKLPT-D 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~lP~-~ 652 (1399)
..+|..++ ++|++|+|++|.++.+ |..|+++++|++|+|++|.+..+| .+|+++++|++|++++| .+..+|. .
T Consensus 18 ~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 93 (549)
T 2z81_A 18 TSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSW 93 (549)
T ss_dssp SSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHH
T ss_pred ccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHH
Confidence 45676654 7899999999999987 678999999999999999999776 57999999999999999 5555554 4
Q ss_pred hccCCCCCEEEccCCccccc--CccccCCCCCCccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhc
Q 040015 653 LGNLTGLRHLRMSGSRLREM--PMKMYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANL 730 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l 730 (1399)
|+++++|++|++++|.++.+ |..++++++|++|+...+... .. .....+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~------------------------~~~~~~ 144 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----SE------------------------IRRIDF 144 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----CE------------------------ECTTTT
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-----cc------------------------cCHhhh
Confidence 99999999999999998854 566888888887765432100 00 001234
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCC
Q 040015 731 KDKKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGS 810 (1399)
Q Consensus 731 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 810 (1399)
.++++|+.|++++|...+
T Consensus 145 ~~l~~L~~L~L~~n~l~~-------------------------------------------------------------- 162 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN-------------------------------------------------------------- 162 (549)
T ss_dssp TTCCEEEEEEEEETTCCE--------------------------------------------------------------
T ss_pred hcccccCeeeccCCcccc--------------------------------------------------------------
Confidence 455667777777665410
Q ss_pred CChhhHHhhhhcCCCCCCCCeEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCC----CCCCCCCCCccceecccCc
Q 040015 811 GNERVEMDVLEMLQPHENLKQLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQF----LPSLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 811 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~L~~~~ 886 (1399)
.....+..+++|+.|++.++....+|.++.. .+++|++|++++|..... .+....+++|+.|+++++.
T Consensus 163 -------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 163 -------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp -------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred -------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 0122344455666666666665555544321 356666666666654331 1122334555555555442
Q ss_pred CceEecccccCCCCCCCCCCCCcceeeeccCCcccccCcCCCCCCccccccceeccccCCcccccccCCCccceEEEecc
Q 040015 887 GIKSVGAEFYGDGSFPLLPFPSLETLKFENMSEWEEWTPSGTEGTEGFLHLQNIEILNCPKLREFSHHFPSLKKMTIYGC 966 (1399)
Q Consensus 887 ~l~~i~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~ 966 (1399)
........+ ......+++++.+.+.+|
T Consensus 235 l~~~~~~~l-----------------------------------------------------~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 235 LTDESFNEL-----------------------------------------------------LKLLRYILELSEVEFDDC 261 (549)
T ss_dssp EEHHHHHHH-----------------------------------------------------HGGGGGCTTCCEEEEESC
T ss_pred cchhHHHHH-----------------------------------------------------HHHhhhhccccccccccc
Confidence 100000000 000001112222222222
Q ss_pred cccCcCCCCCCccEEEEccCCCcccCCCCCCCccEEEEcCCCCccCCCCCCcceeEeeccCCCccccccCCCCCcceeee
Q 040015 967 EKLEQGSEFPCLLELSILMCPNLVELPTFLPSLKTLEIDGCQKLAALPKLPSILELELNNCDGKVLHSTGGHRSLTYMRI 1046 (1399)
Q Consensus 967 ~~l~~~~~~~~L~~L~l~~~~~l~~l~~~l~~L~~L~i~~c~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 1046 (1399)
.... ...++.+ ....+..+++|+.|.+.++..-. ...... ........++|+.|++
T Consensus 262 ~~~~-~~~~~~~----------~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~------------l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 262 TLNG-LGDFNPS----------ESDVVSELGKVETVTIRRLHIPQ-FYLFYD------------LSTVYSLLEKVKRITV 317 (549)
T ss_dssp EEEC-CSCCCCC----------TTTCCCCCTTCCEEEEESCBCSC-GGGSCC------------CCHHHHHSTTCCEEEE
T ss_pred cccc-ccccccc----------chhhhhhhcccccccccccccch-hhhccc------------chhhhhhcccceEEEe
Confidence 1000 0000000 00112345667777776653110 000000 0001122467788888
Q ss_pred cccCCcccccccccccCCccceeeeccchhhhhhhhh-hcccccccccEEEeecCCCcccch---hhhhCCCCccEEEEe
Q 040015 1047 CQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNK-IGLRSLLSLQRLEISECPYFKELP---EKFYELSTLKVLRIS 1122 (1399)
Q Consensus 1047 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~L~~~~~~~~l~---~~~~~l~~L~~L~ls 1122 (1399)
++|. +..++...+.++++|+.|++++|......+.. ..+..+++|++|++++|.. +.++ ..+..+++|++|+++
T Consensus 318 ~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 318 ENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp ESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECT
T ss_pred ccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEECC
Confidence 7776 56677766677888888888888765544322 2244788888888888874 3443 457788888888888
Q ss_pred cCCCCcccCC-CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecC
Q 040015 1123 NCPSLVAFPE-MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENC 1201 (1399)
Q Consensus 1123 ~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 1201 (1399)
+| .++.+|. ...+++|+.|++++|. +..++... +++|+.|++++|
T Consensus 396 ~N-~l~~lp~~~~~~~~L~~L~Ls~N~--------------------------------l~~l~~~~-~~~L~~L~Ls~N 441 (549)
T 2z81_A 396 RN-TFHPMPDSCQWPEKMRFLNLSSTG--------------------------------IRVVKTCI-PQTLEVLDVSNN 441 (549)
T ss_dssp TC-CCCCCCSCCCCCTTCCEEECTTSC--------------------------------CSCCCTTS-CTTCSEEECCSS
T ss_pred CC-CCccCChhhcccccccEEECCCCC--------------------------------cccccchh-cCCceEEECCCC
Confidence 86 4555553 2333455555555442 33333222 236777777775
Q ss_pred CCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcce
Q 040015 1202 GNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQE 1281 (1399)
Q Consensus 1202 ~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 1281 (1399)
.++.+ ..++++|++|++++|... .+|. ...+++|++|++++|......|..+..+++|+.
T Consensus 442 -~l~~~-----------------~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 442 -NLDSF-----------------SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp -CCSCC-----------------CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred -Chhhh-----------------cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 34443 235677888888887643 5665 345778888888886554444555777888888
Q ss_pred EeecCCCCC
Q 040015 1282 FSIHGCSSL 1290 (1399)
Q Consensus 1282 L~l~~c~~l 1290 (1399)
|++++|+..
T Consensus 502 L~l~~N~~~ 510 (549)
T 2z81_A 502 IWLHTNPWD 510 (549)
T ss_dssp EECCSSCBC
T ss_pred EEecCCCcc
Confidence 888887643
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.7e-29 Score=314.93 Aligned_cols=270 Identities=20% Similarity=0.216 Sum_probs=149.6
Q ss_pred cceeeeccchhh-hhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEE
Q 040015 1066 LEELQISHLAEL-MTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEI 1144 (1399)
Q Consensus 1066 L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l 1144 (1399)
++.++++++..+ ...+. .+..+++|++|++++|. +..+|..+..+ +|++|++++|. +..+|. ...++|+.|++
T Consensus 259 l~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l 332 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIID--LFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEETTEEESCSTT--TTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEE
T ss_pred hhhhhhhcchhhhhhchh--hhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCc-ccccccCEEeC
Confidence 455666655222 22222 23467888888888887 45677777777 88888888864 445554 34567777777
Q ss_pred cCCCccccchhhhccccccCcccCCcceEEecCCCCCCccC---cc-cccCCCCeEeeecCCCCCccCccccccccccce
Q 040015 1145 RSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLP---RD-KLSGTLKVLEIENCGNLQSLPEQMICSSLENLK 1220 (1399)
Q Consensus 1145 ~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1220 (1399)
++|......+. ..+++|++|++++| .+.... .. ...++|++|++++|. +..++..
T Consensus 333 ~~n~~~~~~~~---------~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---------- 391 (570)
T 2z63_A 333 TSNKGGNAFSE---------VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN---------- 391 (570)
T ss_dssp ESCBSCCBCCC---------CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE----------
T ss_pred cCCcccccccc---------ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-ccccccc----------
Confidence 77654433322 24556666666664 232221 10 011256666665532 3333221
Q ss_pred eccccCCCCCCceEeecCCCCCcccC-CCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCC-ccCCCCCC
Q 040015 1221 VAGCLHNLAFLDHLEIDDCPLLQSFP-EPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSL-MSFPEGGL 1298 (1399)
Q Consensus 1221 l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~l~~~~~ 1298 (1399)
+..+++|++|++++|......+ ..+..+++|++|++++|......|..+..+++|+.|++++|... ..+|
T Consensus 392 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p---- 463 (570)
T 2z63_A 392 ----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---- 463 (570)
T ss_dssp ----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----
T ss_pred ----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch----
Confidence 3456666666666665444333 34555666666666666554445555556666666666665321 1233
Q ss_pred CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCc
Q 040015 1299 PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLET 1377 (1399)
Q Consensus 1299 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~ 1377 (1399)
..+..+++|++|++++|......|..+..+++|+.|++++| .++.+| ..+..+++|++
T Consensus 464 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 464 --------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp --------------------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred --------------------hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcE
Confidence 33455566666666665544444555556666666666664 355544 34556666666
Q ss_pred eeccCCCCCCCCCC
Q 040015 1378 LEIWECDNLQTVPE 1391 (1399)
Q Consensus 1378 L~l~~c~~l~~lp~ 1391 (1399)
|++++|+--...|.
T Consensus 523 L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 523 IWLHTNPWDCSCPR 536 (570)
T ss_dssp EECCSSCBCCCTTT
T ss_pred EEecCCcccCCCcc
Confidence 66666654444443
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-29 Score=313.73 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=80.7
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccC
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSG 666 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 666 (1399)
...+.|.+++.++.+|..+. ++|++|+|++|.+..+ |..|+++++|++|++++|......|..|+++++|++|++++
T Consensus 6 ~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 6 ASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 34456888999999998775 7999999999999977 56899999999999999944444457799999999999999
Q ss_pred CcccccCcc-ccCCCCCCccC
Q 040015 667 SRLREMPMK-MYKLKNLQTLS 686 (1399)
Q Consensus 667 ~~l~~lp~~-i~~L~~L~~L~ 686 (1399)
|.++.+|.. ++.+++|++|+
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEE
T ss_pred CccCccCHHHhccCCCCcEEE
Confidence 999888765 66666666664
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=319.78 Aligned_cols=247 Identities=17% Similarity=0.198 Sum_probs=144.1
Q ss_pred cccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCc
Q 040015 1060 FQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTL 1139 (1399)
Q Consensus 1060 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L 1139 (1399)
+..+++|+.|++++|. +..++.. +..+ +|++|++++|... .+|. ..+++|++|++++|.....++. ...++|
T Consensus 278 ~~~l~~L~~L~l~~~~-l~~l~~~--~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L 349 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVT-IERVKDF--SYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSL 349 (570)
T ss_dssp TGGGTTCSEEEEESCE-ECSCCBC--CSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred hcCcCcccEEEecCcc-chhhhhh--hccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCC
Confidence 3344444445444443 2223322 1233 5555555555532 3433 3455555666655543333332 334556
Q ss_pred ceEEEcCCCccccc--hhhhccccccCcccCCcceEEecCCCCCCccCcc-cccCCCCeEeeecCCCCCccCc-cccccc
Q 040015 1140 VGLEIRSCEALQFL--PEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRD-KLSGTLKVLEIENCGNLQSLPE-QMICSS 1215 (1399)
Q Consensus 1140 ~~L~l~~c~~l~~l--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~-~~~~~~ 1215 (1399)
+.|++++|...... +..+ ..+++|++|++++|. +..++.. ...++|++|++++|. +..++. ..
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~---- 416 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSD-------FGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSV---- 416 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHH-------HTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCT----
T ss_pred CEEeCcCCccCccccccccc-------cccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhh----
Confidence 66666555322111 2211 145667777777743 3333322 112478888888854 333322 22
Q ss_pred cccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCC-ccCccccccCCCcceEeecCCCCCccCC
Q 040015 1216 LENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNL-KFLPNGMYILTSLQEFSIHGCSSLMSFP 1294 (1399)
Q Consensus 1216 L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l~ 1294 (1399)
+.++++|++|++++|......|..+..+++|++|++++|... ..+|..+..+++|+.|++++| .++.++
T Consensus 417 ---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 417 ---------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp ---------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred ---------hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCC
Confidence 678899999999999988888888889999999999998765 468888889999999999987 444442
Q ss_pred CCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCC
Q 040015 1295 EGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1295 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 1360 (1399)
. ..+.++++|++|++++|......|..+..+++|+.|++++|+
T Consensus 487 ~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 487 P-----------------------TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp T-----------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h-----------------------hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 2 224445566666666654433334445566666666666654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8e-30 Score=321.46 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCCCceEeecCCCCCcccCCCCC--CCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceE
Q 040015 1228 LAFLDHLEIDDCPLLQSFPEPCL--PTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISL 1305 (1399)
Q Consensus 1228 l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 1305 (1399)
+++|++|++++|... .+|..+. .+++|+.|+|++|.. ..+|..+..+++|+.|++++|..+
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~l--------------- 549 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDA--------------- 549 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCT---------------
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC-CCcChhhhcCCCCCEEECCCCccc---------------
Confidence 335555555555433 4454444 555566666665443 235666666666666666554311
Q ss_pred EeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc---------cccCCCCCcC
Q 040015 1306 SILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP---------NGLKNLKYLE 1376 (1399)
Q Consensus 1306 ~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---------~~~~~l~~L~ 1376 (1399)
++ +++....+..+..+++|++|++++|.. +.+|..+. ++|+.|++++|+ +.+++ .....+...+
T Consensus 550 --s~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~ 622 (636)
T 4eco_A 550 --QG-NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDK 622 (636)
T ss_dssp --TC-CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCT
T ss_pred --cc-CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCC
Confidence 01 122222333456677777777777654 66666543 677777777754 44432 2222344457
Q ss_pred ceeccCCCCCC
Q 040015 1377 TLEIWECDNLQ 1387 (1399)
Q Consensus 1377 ~L~l~~c~~l~ 1387 (1399)
..++.+|+.+.
T Consensus 623 ~~~i~~C~~L~ 633 (636)
T 4eco_A 623 TQDIRGCDALD 633 (636)
T ss_dssp TSEEESCGGGC
T ss_pred ccccCCCcccc
Confidence 77888998765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=302.58 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=68.2
Q ss_pred cEEEecCCCCcccCcccCCCCCCcEEeccCCcccccc-ccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCc
Q 040015 590 RVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLP-DSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSR 668 (1399)
Q Consensus 590 r~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 668 (1399)
++||+++|+++.+|..+. ++|++|+|++|.+..+| ..|.++++|++|++++|......|..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578899998888888776 78999999999888776 578889999999999884434447788889999999999888
Q ss_pred ccccCcc
Q 040015 669 LREMPMK 675 (1399)
Q Consensus 669 l~~lp~~ 675 (1399)
++.+|..
T Consensus 81 l~~lp~~ 87 (520)
T 2z7x_B 81 LVKISCH 87 (520)
T ss_dssp CCEEECC
T ss_pred eeecCcc
Confidence 8777654
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3.2e-28 Score=310.05 Aligned_cols=203 Identities=21% Similarity=0.302 Sum_probs=119.4
Q ss_pred cccCCc-cceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchh---hhh--CCCCccEEEEecCCCCcccCCC
Q 040015 1060 FQHFTA-LEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPE---KFY--ELSTLKVLRISNCPSLVAFPEM 1133 (1399)
Q Consensus 1060 ~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~---~~~--~l~~L~~L~ls~c~~l~~~~~~ 1133 (1399)
+..+++ |+.|++++|. ++.+|........++|+.|++++|.....+|. .+. .+++|+.|++++|. ++.+
T Consensus 614 l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l--- 688 (876)
T 4ecn_A 614 FCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF--- 688 (876)
T ss_dssp SCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC---
T ss_pred HhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc---
Confidence 444556 7777777775 33555433222233477777777665443332 111 22355555555532 2233
Q ss_pred CCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccccc---------CCCCeEeeecCCCC
Q 040015 1134 GLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLS---------GTLKVLEIENCGNL 1204 (1399)
Q Consensus 1134 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~---------~~L~~L~l~~c~~l 1204 (1399)
|...+. .+++|+.|++++| .+..+|...+. ++|+.|++++| .+
T Consensus 689 --------------------p~~~~~------~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 689 --------------------PTELFA------TGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp --------------------CHHHHH------TTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred --------------------CHHHHc------cCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CC
Confidence 333221 2344555555542 33344433221 16777777775 45
Q ss_pred CccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceeccc------ccCCccCccccccCCC
Q 040015 1205 QSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISN------CQNLKFLPNGMYILTS 1278 (1399)
Q Consensus 1205 ~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~~~~l~~ 1278 (1399)
..+|.... ...+++|+.|+|++|...+ +|..+..+++|+.|+|++ |.....+|..+.++++
T Consensus 741 ~~lp~~l~------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 741 TSLSDDFR------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCCCGGGS------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccchHHhh------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 56665420 1277888888888887554 777777888888888866 5556678888888999
Q ss_pred cceEeecCCCCCccCCCCCCCCCcceEEeccC
Q 040015 1279 LQEFSIHGCSSLMSFPEGGLPPNLISLSILDC 1310 (1399)
Q Consensus 1279 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 1310 (1399)
|+.|+|++| .+..+|.. +.++|+.|++++|
T Consensus 808 L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N 837 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEK-LTPQLYILDIADN 837 (876)
T ss_dssp CCEEECCSS-CCCBCCSC-CCSSSCEEECCSC
T ss_pred CCEEECCCC-CCCccCHh-hcCCCCEEECCCC
Confidence 999999886 45888765 4456666666554
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.6e-27 Score=301.53 Aligned_cols=107 Identities=24% Similarity=0.335 Sum_probs=82.3
Q ss_pred cccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcCh-hh
Q 040015 577 RVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLPT-DL 653 (1399)
Q Consensus 577 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP~-~i 653 (1399)
.||.++ ..++++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ +|.+|++|++|+|++| .+..+|. .|
T Consensus 45 ~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 45 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 455543 246788888888888884 578888888888888888888765 6788888888888888 5666764 47
Q ss_pred ccCCCCCEEEccCCcccccCcc-ccCCCCCCccCc
Q 040015 654 GNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSH 687 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 687 (1399)
.+|++|++|++++|.++.+|.. ++++++|++|+.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 8888888888888888887764 777777777764
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.4e-27 Score=304.09 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=121.0
Q ss_pred cCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcc
Q 040015 1167 AFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQS 1244 (1399)
Q Consensus 1167 ~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~ 1244 (1399)
+++|+.|++++| .+..+|...+ .++|+.|++++| .+..+|....... . ..+.++++|++|+|++|... .
T Consensus 672 ~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~-~-----~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 672 GINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPK-D-----GNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp CCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCT-T-----SCCTTGGGCCEEECCSSCCC-C
T ss_pred CCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccc-c-----ccccccCCccEEECCCCCCc-c
Confidence 446778888774 4556665433 247888888874 4556665431000 0 00123447888888877644 6
Q ss_pred cCCCCC--CCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccc
Q 040015 1245 FPEPCL--PTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLH 1322 (1399)
Q Consensus 1245 ~~~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 1322 (1399)
+|..+. .+++|+.|+|++|.. ..+|..+..+++|+.|+|++|+.+ + ++++....+..+.
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~l-----------------s-~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDA-----------------E-GNRILRQWPTGIT 803 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCT-----------------T-CCBCCCCCCTTGG
T ss_pred chHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCc-----------------c-cccccccChHHHh
Confidence 676665 677888888887653 447777777888888888775411 1 1334444456688
Q ss_pred cCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cc--------cCCCCCcCceeccCCCCCC
Q 040015 1323 RLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NG--------LKNLKYLETLEIWECDNLQ 1387 (1399)
Q Consensus 1323 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~--------~~~l~~L~~L~l~~c~~l~ 1387 (1399)
++++|++|+|++|.. ..+|..+. ++|+.|+|++|+ +..+. .. ...+..-+..+|.+|+.+.
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 899999999999876 88898654 799999999976 54443 11 2223333455778888765
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.3e-27 Score=289.14 Aligned_cols=107 Identities=22% Similarity=0.222 Sum_probs=90.0
Q ss_pred ccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChhh
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTDL 653 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~i 653 (1399)
..+|..++ ++|++|+|++|.++.++ ..|.++++|++|+|++|.+..+ |..|+++++|++|++++| .+..+|..
T Consensus 13 ~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~- 87 (520)
T 2z7x_B 13 IHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH- 87 (520)
T ss_dssp SSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-
T ss_pred cccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-
Confidence 35776654 88999999999999885 6899999999999999999977 678999999999999998 67788876
Q ss_pred ccCCCCCEEEccCCcccc--cCccccCCCCCCccCce
Q 040015 654 GNLTGLRHLRMSGSRLRE--MPMKMYKLKNLQTLSHF 688 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~ 688 (1399)
.+++|++|++++|.++. +|..++++++|++|+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEec
Confidence 89999999999999876 45678888888877653
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.7e-28 Score=307.55 Aligned_cols=154 Identities=17% Similarity=0.277 Sum_probs=111.7
Q ss_pred CCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCC--------CCCccceecccc
Q 040015 1192 TLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLP--------TSMLRYARISNC 1263 (1399)
Q Consensus 1192 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~c 1263 (1399)
+|+.|++++| .++.+|... +..+++|++|++++|... .+|..... +++|+.|++++|
T Consensus 434 ~L~~L~Ls~N-~l~~lp~~~-------------~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 434 NVSSINLSNN-QISKFPKEL-------------FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp CEEEEECCSS-CCCSCCTHH-------------HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred CCCEEECcCC-ccCcCCHHH-------------HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC
Confidence 5666666663 345565543 456788888888888755 66654433 227888888886
Q ss_pred cCCccCccccc--cCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEc------CC
Q 040015 1264 QNLKFLPNGMY--ILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFG------GC 1335 (1399)
Q Consensus 1264 ~~l~~lp~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~------~~ 1335 (1399)
. +..+|..+. .+++|+.|++++| .++.+|. .+.++++|++|+++ +|
T Consensus 499 ~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~------------------------~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 499 K-LTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT------------------------QPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp C-CCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC------------------------GGGGCSSCCEEECCSCBCTTCC
T ss_pred c-CCccChhhhhccCCCcCEEECCCC-CCCCcCh------------------------hhhcCCCCCEEECCCCcccccC
Confidence 5 447887776 7888888888885 4444543 34567788888884 45
Q ss_pred CCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCCCCCCCC
Q 040015 1336 QGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDNLQTVP 1390 (1399)
Q Consensus 1336 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 1390 (1399)
.....+|..+..+++|+.|++++| .++.+|..+. ++|++|++++|+ +.+++
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP-NISID 603 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT-TCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC-Ccccc
Confidence 667789999999999999999996 4699997655 899999999996 44444
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.3e-27 Score=297.78 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=106.4
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccc-cccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPD-STGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L 632 (1399)
+.++.|.+.++.. ..+++..|.++++|++|||++|.|+.+ |.+|++|++|++|+|++|+|+.+|. .|++|
T Consensus 52 ~~~~~LdLs~N~i--------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCC--------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCCCC--------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 3688888887753 567888899999999999999999998 5679999999999999999999986 68999
Q ss_pred CCCcEEEccCCCCCCCcCh-hhccCCCCCEEEccCCcccc--cCccccCCCCCCccCc
Q 040015 633 CNLQSIILLECYSLSKLPT-DLGNLTGLRHLRMSGSRLRE--MPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~ 687 (1399)
++|++|++++| .+..+|. .|++|++|++|++++|.++. +|..++.+++|++|+.
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 99999999999 6667765 59999999999999999875 4566788888887764
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=4.6e-26 Score=273.63 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccc-cccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 585 RLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIK-QLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~-~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
+..+|++|++++|.+..+|++|++|++|++|++++|.+. .+|.+++++++|+++++.+|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 358899999999999999999999999999999999987 8899999999987777766621 4567777
Q ss_pred ccCCcccccCc
Q 040015 664 MSGSRLREMPM 674 (1399)
Q Consensus 664 l~~~~l~~lp~ 674 (1399)
+++|.++.+|.
T Consensus 78 l~~~~l~~lp~ 88 (454)
T 1jl5_A 78 LNNLGLSSLPE 88 (454)
T ss_dssp CTTSCCSCCCS
T ss_pred ecCCccccCCC
Confidence 77777666654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1e-24 Score=272.41 Aligned_cols=447 Identities=17% Similarity=0.138 Sum_probs=255.0
Q ss_pred cCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccc-cccccC
Q 040015 554 AECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQL-PDSTGN 631 (1399)
Q Consensus 554 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~ 631 (1399)
+...+++.+.++.. ..+|..++ ++|++|+|++|.++.+| ..|+++++|++|+|++|.|+.+ |..|++
T Consensus 30 ~~~~~~l~ls~~~L--------~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 30 NELESMVDYSNRNL--------THVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp ---CCEEECTTSCC--------CSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT
T ss_pred cCCCcEEEcCCCCC--------ccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC
Confidence 44456777766542 35776653 78999999999999885 6899999999999999999977 667899
Q ss_pred CCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccC--ccccCCCCCCccCceeeCCCCCCCcccccccccccc
Q 040015 632 LCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMP--MKMYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQG 709 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~ 709 (1399)
+++|++||+++| .+..+|.. .+++|++|++++|.++.+| ..++++++|++|+...... ..
T Consensus 99 l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l------~~--------- 160 (562)
T 3a79_B 99 NQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF------RQ--------- 160 (562)
T ss_dssp CTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC------CT---------
T ss_pred CCCCCEEECCCC-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc------cc---------
Confidence 999999999998 67788876 8999999999999988765 5688888888876532211 00
Q ss_pred EEEEcCCcCCCCHhHHHHhhcCCCCCCceEEEEecCC--CCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhh
Q 040015 710 ELVISGLQNVICFTDAMEANLKDKKELTQLVLQWSDD--FGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFRE 787 (1399)
Q Consensus 710 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~ 787 (1399)
.....+..+ +|+.|+++.|.. .+.. |
T Consensus 161 ---------------~~~~~l~~L-~L~~L~L~~n~l~~~~~~--------------------------------~---- 188 (562)
T 3a79_B 161 ---------------LDLLPVAHL-HLSCILLDLVSYHIKGGE--------------------------------T---- 188 (562)
T ss_dssp ---------------TTTGGGTTS-CEEEEEEEESSCCCCSSS--------------------------------C----
T ss_pred ---------------Cchhhhhhc-eeeEEEeecccccccccC--------------------------------c----
Confidence 000112222 347777776644 1000 0
Q ss_pred hccccchhhhhhhhhcccCCCCCCChhhHHhhhhcCCCCCCCCeEEEeecCCCC-CCcCcCCCCcCceeEEEEeCCCC-C
Q 040015 788 AAGAYRQESVELKSERRSSLDGSGNERVEMDVLEMLQPHENLKQLTINDYGGIK-FPGWIASPLFCNMTVLVLSNCRN-C 865 (1399)
Q Consensus 788 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~-~ 865 (1399)
..+..+.. ..+ .+.+.++.... .+.. ....+++|+.+++++|.. +
T Consensus 189 ------------------------------~~l~~l~~-~~l-~l~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~ 235 (562)
T 3a79_B 189 ------------------------------ESLQIPNT-TVL-HLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENC 235 (562)
T ss_dssp ------------------------------CEEEECCE-EEE-EEEECSSSCCCCCCEE-EESSEEEEEEEEEECCSTTH
T ss_pred ------------------------------ccccccCc-ceE-EEEecCccchhhhhhh-cccccceEEEeccccccccc
Confidence 00011100 011 22333332221 1111 112455666666666531 0
Q ss_pred ----CCCCCCCCCCCccceecccCcCceEecccccCCCCCCCCCCCCcceeeeccCCcccccCcCCCCCCccccccceec
Q 040015 866 ----QFLPSLGRLPMLKDLTIEGMEGIKSVGAEFYGDGSFPLLPFPSLETLKFENMSEWEEWTPSGTEGTEGFLHLQNIE 941 (1399)
Q Consensus 866 ----~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 941 (1399)
..++.+..+++|+.|++.++..-......... ....++|++|+++++
T Consensus 236 ~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-----~~~~~~L~~L~l~~n------------------------ 286 (562)
T 3a79_B 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-----FFWPRPVEYLNIYNL------------------------ 286 (562)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-----HHTTSSEEEEEEEEE------------------------
T ss_pred chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-----hhhcccccEEEEecc------------------------
Confidence 11122444555666665544210000000000 001235555555543
Q ss_pred cccCCcccccccCC-----CccceEEEecccccCc-C--------CCCCCccEEEEccCCCcc-cCCCCCCCccEEEEcC
Q 040015 942 ILNCPKLREFSHHF-----PSLKKMTIYGCEKLEQ-G--------SEFPCLLELSILMCPNLV-ELPTFLPSLKTLEIDG 1006 (1399)
Q Consensus 942 l~~c~~l~~l~~~~-----~~L~~L~l~~~~~l~~-~--------~~~~~L~~L~l~~~~~l~-~l~~~l~~L~~L~i~~ 1006 (1399)
.--..+|... .+++.|.+.+...... + ...++|+.|++.++.... ..+..+++|++|++++
T Consensus 287 ----~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 287 ----TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp ----EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred ----EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 2222222222 3333333333221110 0 011347777777665332 1225667788888887
Q ss_pred CCCcc----CCCCCCcceeEeeccCCCccc----cccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhh
Q 040015 1007 CQKLA----ALPKLPSILELELNNCDGKVL----HSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELM 1078 (1399)
Q Consensus 1007 c~~l~----~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 1078 (1399)
|.... .+..+++|+.|++++|..... ..+..+++|++|++++|.....++...+..+++|+.|++++|....
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 75332 234567777777777765532 2366778888888888775444666677777888888888876443
Q ss_pred hhhhhhccccc-ccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccch
Q 040015 1079 TLSNKIGLRSL-LSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLP 1154 (1399)
Q Consensus 1079 ~~~~~~~~~~l-~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~ 1154 (1399)
..+. .+ ++|++|++++|. ++.+|..+..+++|++|++++| .++.+|. +...++|+.|++++|+.....+
T Consensus 443 ~~~~-----~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 443 SVFR-----CLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGGS-----SCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred chhh-----hhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 3332 23 578888888876 4567766667888888888775 4556664 3445677777777766544333
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.6e-24 Score=267.47 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccc-ccccCCCCCcEEEccCCCCCCCc-ChhhccCCCCCEE
Q 040015 585 RLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLP-DSTGNLCNLQSIILLECYSLSKL-PTDLGNLTGLRHL 662 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L 662 (1399)
.+...+++|+++|+++.+|..+. ++|++|+|++|.|..+| .+|+++++|++|++++| .+..+ |..|+++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEE
Confidence 34556999999999999998775 89999999999999887 58999999999999999 55555 6779999999999
Q ss_pred EccCCcccccCcc
Q 040015 663 RMSGSRLREMPMK 675 (1399)
Q Consensus 663 ~l~~~~l~~lp~~ 675 (1399)
++++|.++.+|..
T Consensus 106 ~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 106 DVSHNRLQNISCC 118 (562)
T ss_dssp ECTTSCCCEECSC
T ss_pred ECCCCcCCccCcc
Confidence 9999988877643
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2e-24 Score=259.42 Aligned_cols=333 Identities=26% Similarity=0.328 Sum_probs=137.5
Q ss_pred CccEEEEccCCCcccCCCCCCCccEEEEcCCCCccCCCCCCcceeEeeccCCCccccccCCCCCcceeeecccCCccccc
Q 040015 977 CLLELSILMCPNLVELPTFLPSLKTLEIDGCQKLAALPKLPSILELELNNCDGKVLHSTGGHRSLTYMRICQISKLDCLV 1056 (1399)
Q Consensus 977 ~L~~L~l~~~~~l~~l~~~l~~L~~L~i~~c~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 1056 (1399)
+|+.|++.++ .++.+|..+++|+.|++++| .+..++..+ ++|++|++++|. +..++
T Consensus 92 ~L~~L~l~~n-~l~~lp~~~~~L~~L~l~~n-~l~~l~~~~---------------------~~L~~L~L~~n~-l~~lp 147 (454)
T 1jl5_A 92 HLESLVASCN-SLTELPELPQSLKSLLVDNN-NLKALSDLP---------------------PLLEYLGVSNNQ-LEKLP 147 (454)
T ss_dssp TCSEEECCSS-CCSSCCCCCTTCCEEECCSS-CCSCCCSCC---------------------TTCCEEECCSSC-CSSCC
T ss_pred CCCEEEccCC-cCCccccccCCCcEEECCCC-ccCcccCCC---------------------CCCCEEECcCCC-CCCCc
Confidence 4455554433 33345555566677766665 233333321 345555555544 22333
Q ss_pred ccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCC
Q 040015 1057 EGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLP 1136 (1399)
Q Consensus 1057 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~ 1136 (1399)
.+.++++|++|++++|. ++.++. .+++|++|++++|.. +.+| .+..+++|++|++++|. ++.+|. .+
T Consensus 148 --~~~~l~~L~~L~l~~N~-l~~lp~-----~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~-l~~l~~--~~ 214 (454)
T 1jl5_A 148 --ELQNSSFLKIIDVDNNS-LKKLPD-----LPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNS-LKKLPD--LP 214 (454)
T ss_dssp --CCTTCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSC-CSSCCC--CC
T ss_pred --ccCCCCCCCEEECCCCc-CcccCC-----CcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCc-CCcCCC--Cc
Confidence 25555666666666553 222322 234666666666653 3344 35666666666666643 333432 23
Q ss_pred CCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCcccccccc
Q 040015 1137 STLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSL 1216 (1399)
Q Consensus 1137 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L 1216 (1399)
++|+.|++++| .++.+|. + ..+++|++|++++| .+..+|. .+++|+.|++++| .+..+|.. .++|
T Consensus 215 ~~L~~L~l~~n-~l~~lp~-~-------~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l~~N-~l~~l~~~--~~~L 279 (454)
T 1jl5_A 215 LSLESIVAGNN-ILEELPE-L-------QNLPFLTTIYADNN-LLKTLPD--LPPSLEALNVRDN-YLTDLPEL--PQSL 279 (454)
T ss_dssp TTCCEEECCSS-CCSSCCC-C-------TTCTTCCEEECCSS-CCSSCCS--CCTTCCEEECCSS-CCSCCCCC--CTTC
T ss_pred CcccEEECcCC-cCCcccc-c-------CCCCCCCEEECCCC-cCCcccc--cccccCEEECCCC-cccccCcc--cCcC
Confidence 46666666665 3334442 1 14556666666663 4444442 2246666666663 34444432 1333
Q ss_pred ccceeccc-cC----CCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCc
Q 040015 1217 ENLKVAGC-LH----NLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLM 1291 (1399)
Q Consensus 1217 ~~L~l~~~-~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 1291 (1399)
++|++++| +. -.++|++|++++|...+ ++.. .++|+.|++++|. +..+|.. +++|+.|++++| .++
T Consensus 280 ~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNK-LIELPAL---PPRLERLIASFN-HLA 350 (454)
T ss_dssp CEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCS
T ss_pred CEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCc-ccccccc---CCcCCEEECCCC-ccc
Confidence 33333333 11 11456666666665332 2211 1356666666643 3345542 466666666664 455
Q ss_pred cCCCCCCCCCcceEEeccCCCCCCCc--ccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCcccccc
Q 040015 1292 SFPEGGLPPNLISLSILDCENLKPSS--EWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGL 1369 (1399)
Q Consensus 1292 ~l~~~~~~~~L~~L~l~~c~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 1369 (1399)
.+|. .+++|+.|+++++ .++.++ +. .+.. ++.|+....+|. .+++|+.|++++|+ ++.+|..-
T Consensus 351 ~lp~--~l~~L~~L~L~~N-~l~~l~~ip~------~l~~--L~~n~~~~~i~~---~~~~L~~L~ls~N~-l~~~~~iP 415 (454)
T 1jl5_A 351 EVPE--LPQNLKQLHVEYN-PLREFPDIPE------SVED--LRMNSHLAEVPE---LPQNLKQLHVETNP-LREFPDIP 415 (454)
T ss_dssp CCCC--CCTTCCEEECCSS-CCSSCCCCCT------TCCE--EECCC---------------------------------
T ss_pred cccc--hhhhccEEECCCC-CCCcCCCChH------HHHh--hhhccccccccc---ccCcCCEEECCCCc-CCccccch
Confidence 5555 4556666666553 233211 11 1222 222333344443 24788888888854 54332110
Q ss_pred CCCCCcCceeccCCCCCCC
Q 040015 1370 KNLKYLETLEIWECDNLQT 1388 (1399)
Q Consensus 1370 ~~l~~L~~L~l~~c~~l~~ 1388 (1399)
++|+.|.+.+|.....
T Consensus 416 ---~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 416 ---ESVEDLRMNSERVVDP 431 (454)
T ss_dssp -------------------
T ss_pred ---hhHhheeCcCcccCCc
Confidence 3456666666654433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.2e-24 Score=259.34 Aligned_cols=356 Identities=16% Similarity=0.175 Sum_probs=222.8
Q ss_pred cccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccc
Q 040015 550 AFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDST 629 (1399)
Q Consensus 550 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i 629 (1399)
.+..+++|+.|.+.++.. ..+| .|..+++|++|+|++|.++.+| ++.+++|++|+|++|.++.+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l--------~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSI--------TDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCC--------CCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCc--------ccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 355677778777776542 2334 3567788888888888877775 777888888888888877775 7
Q ss_pred cCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCceeeCCCCCCCcccccccccccc
Q 040015 630 GNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQG 709 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~ 709 (1399)
+++++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++|+...+.. +.
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~-----~~---------- 162 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK-----IT---------- 162 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSC-----CC----------
T ss_pred CCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCc-----cc----------
Confidence 77888888888887 555565 777888888888888777764 56666666665321110 00
Q ss_pred EEEEcCCcCCCCHhHHHHhhcCCCCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhhhc
Q 040015 710 ELVISGLQNVICFTDAMEANLKDKKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFREAA 789 (1399)
Q Consensus 710 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~~~ 789 (1399)
.. .+..+++|+.|++++|...
T Consensus 163 -----------~~------~~~~l~~L~~L~ls~n~l~------------------------------------------ 183 (457)
T 3bz5_A 163 -----------KL------DVTPQTQLTTLDCSFNKIT------------------------------------------ 183 (457)
T ss_dssp -----------CC------CCTTCTTCCEEECCSSCCC------------------------------------------
T ss_pred -----------cc------ccccCCcCCEEECCCCccc------------------------------------------
Confidence 00 1344566777777665441
Q ss_pred cccchhhhhhhhhcccCCCCCCChhhHHhhhhcCCCCCCCCeEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCCCC
Q 040015 790 GAYRQESVELKSERRSSLDGSGNERVEMDVLEMLQPHENLKQLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQFLP 869 (1399)
Q Consensus 790 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 869 (1399)
.++ +..+++|+.|.++++....++ + ..+++|+.|++++|.... +|
T Consensus 184 -----------------------------~l~-l~~l~~L~~L~l~~N~l~~~~--l--~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 184 -----------------------------ELD-VSQNKLLNRLNCDTNNITKLD--L--NQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp -----------------------------CCC-CTTCTTCCEEECCSSCCSCCC--C--TTCTTCSEEECCSSCCSC-CC
T ss_pred -----------------------------eec-cccCCCCCEEECcCCcCCeec--c--ccCCCCCEEECcCCcccc-cC
Confidence 011 344567777877777665553 2 256778888888877544 55
Q ss_pred CCCCCCCccceecccCcCceEecccccCCCCCCCCCCCCcceeeeccCCcccccCcCCCCCCccccccceeccccCCccc
Q 040015 870 SLGRLPMLKDLTIEGMEGIKSVGAEFYGDGSFPLLPFPSLETLKFENMSEWEEWTPSGTEGTEGFLHLQNIEILNCPKLR 949 (1399)
Q Consensus 870 ~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 949 (1399)
++.+++|+.|++++|. +..++ ...+++|+.|.+++ .+|+.+++++|..+.
T Consensus 229 -~~~l~~L~~L~l~~N~-l~~~~----------~~~l~~L~~L~l~~------------------n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP-LTELD----------VSTLSKLTTLHCIQ------------------TDLLEIDLTHNTQLI 278 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CSCCC----------CTTCTTCCEEECTT------------------CCCSCCCCTTCTTCC
T ss_pred -ccccCCCCEEEeeCCc-CCCcC----------HHHCCCCCEEeccC------------------CCCCEEECCCCccCC
Confidence 7777888888888774 22221 13466777766543 245566666665554
Q ss_pred ccccCCCccceEEEecccccCcCCCCCCccEEEEccCCCcccCCCCCCCccEEEEcCCCCccCCCCCCcceeEeeccCCC
Q 040015 950 EFSHHFPSLKKMTIYGCEKLEQGSEFPCLLELSILMCPNLVELPTFLPSLKTLEIDGCQKLAALPKLPSILELELNNCDG 1029 (1399)
Q Consensus 950 ~l~~~~~~L~~L~l~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~l~~L~~L~i~~c~~l~~l~~l~~L~~L~l~~~~~ 1029 (1399)
.++. ..+++|+.|++++|+.+..+|...++|+.|++++| ++|+.|++++|..
T Consensus 279 ~~~~-------------------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~---------~~L~~L~L~~N~l 330 (457)
T 3bz5_A 279 YFQA-------------------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN---------PKLVYLYLNNTEL 330 (457)
T ss_dssp EEEC-------------------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC---------TTCCEEECTTCCC
T ss_pred cccc-------------------cccccCCEEECCCCcccceeccCCCcceEechhhc---------ccCCEEECCCCcc
Confidence 4431 34567777777777777777766667777766665 4566677766655
Q ss_pred ccccccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchh
Q 040015 1030 KVLHSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPE 1108 (1399)
Q Consensus 1030 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~ 1108 (1399)
... .+..+++|+.|++++|. +..++.|..|++++|..... ..+..|+.+++++|.....+|.
T Consensus 331 ~~l-~l~~l~~L~~L~l~~N~---------l~~l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 331 TEL-DVSHNTKLKSLSCVNAH---------IQDFSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SCC-CCTTCTTCSEEECCSSC---------CCBCTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCT
T ss_pred ccc-ccccCCcCcEEECCCCC---------CCCccccccccccCCcEEec-------ceeeecCccccccCcEEEEcCh
Confidence 443 36667777777777766 33345566666665532111 1345566666666665555554
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2e-23 Score=254.10 Aligned_cols=374 Identities=15% Similarity=0.109 Sum_probs=208.2
Q ss_pred CcccCCCCCCCccEEEEcCCCCc----cCCCCCCcceeEeeccCCCc-c--ccccCCCCCcceeeecccCCccccccccc
Q 040015 988 NLVELPTFLPSLKTLEIDGCQKL----AALPKLPSILELELNNCDGK-V--LHSTGGHRSLTYMRICQISKLDCLVEGYF 1060 (1399)
Q Consensus 988 ~l~~l~~~l~~L~~L~i~~c~~l----~~l~~l~~L~~L~l~~~~~~-~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1060 (1399)
.++.+|...++|++|++++|..- ..+..+++|++|++++|... . ...+.++++|++|++++|. +..+.+..|
T Consensus 21 ~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 99 (455)
T 3v47_A 21 GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF 99 (455)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred CcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc
Confidence 45566665577888888887533 23456777888888777543 1 3456778888888888877 445555557
Q ss_pred ccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhh-hhCCCCccEEEEecCCCCcccCC-CCC--C
Q 040015 1061 QHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEK-FYELSTLKVLRISNCPSLVAFPE-MGL--P 1136 (1399)
Q Consensus 1061 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~~L~~L~ls~c~~l~~~~~-~~~--~ 1136 (1399)
.++++|++|++++|......+....+..+++|++|++++|......|.. +..+++|++|++++|......+. ... .
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 7888888888888865443444333557788888888888865555654 77788888888887653332221 111 1
Q ss_pred CCcceEEEcCCCccccchhhhccc--cccCcccCCcceEEecCCCCCCccCccc----ccCCCCeEeeecCCCCCccCcc
Q 040015 1137 STLVGLEIRSCEALQFLPEKMMHE--SQKNKDAFLLEYLVIEGCPALVSLPRDK----LSGTLKVLEIENCGNLQSLPEQ 1210 (1399)
Q Consensus 1137 ~~L~~L~l~~c~~l~~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~L~~L~l~~c~~l~~l~~~ 1210 (1399)
.+|+.|++++|... .++...... ......+++|++|++++|.-....+... ...+|+.|++++|.........
T Consensus 180 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 180 KHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp CEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 56777777776432 222211100 0001134567777777653322222111 1136666666665433322111
Q ss_pred ccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCC
Q 040015 1211 MICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSL 1290 (1399)
Q Consensus 1211 ~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 1290 (1399)
.....+....+.+ ...++|++|++++|...+..|..+..+++|+.|++++|......|..+..+++|++|++++| .+
T Consensus 259 ~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 259 TNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL 335 (455)
T ss_dssp CSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred hhhccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-cc
Confidence 1111111111110 12356666666666665555666666666666666665544444555556666666666664 33
Q ss_pred ccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-ccc
Q 040015 1291 MSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGL 1369 (1399)
Q Consensus 1291 ~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~ 1369 (1399)
+.+ .+..+..+++|++|++++|......|..+..+++|+.|++++| .++.+| ..+
T Consensus 336 ~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 336 GSI-----------------------DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp CEE-----------------------CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred CCc-----------------------ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence 333 3334555566666666665544444555556666666666663 455555 334
Q ss_pred CCCCCcCceeccCCCCCCCCC
Q 040015 1370 KNLKYLETLEIWECDNLQTVP 1390 (1399)
Q Consensus 1370 ~~l~~L~~L~l~~c~~l~~lp 1390 (1399)
..+++|++|++++|+--...|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 556666666666655444444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.3e-23 Score=250.15 Aligned_cols=340 Identities=17% Similarity=0.203 Sum_probs=223.5
Q ss_pred CCCccEEEEcCCCC--ccCCCCCCcceeEeeccCCCccccccCCCCCcceeeecccCCcccccccccccCCccceeeecc
Q 040015 996 LPSLKTLEIDGCQK--LAALPKLPSILELELNNCDGKVLHSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISH 1073 (1399)
Q Consensus 996 l~~L~~L~i~~c~~--l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1073 (1399)
+++++.|++.+|.. +..+..+++|+.|++++|.......+..+++|++|++++|.. ..++. +.++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcc-ccChh--hcCCCCCCEEECCC
Confidence 56889999988742 233445788999999988877666688899999999998874 44443 78899999999998
Q ss_pred chhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccc
Q 040015 1074 LAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFL 1153 (1399)
Q Consensus 1074 ~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 1153 (1399)
|. ++.++. +..+++|++|++++|. +..++ .+..+++|+.|++++ .+..++....+++|+.|++++|. ++.+
T Consensus 122 n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 192 (466)
T 1o6v_A 122 NQ-ITDIDP---LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-VSDI 192 (466)
T ss_dssp SC-CCCCGG---GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-CCCC
T ss_pred CC-CCCChH---HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-CCCC
Confidence 85 344432 5588999999999998 44555 478899999999974 34445556667889999999875 4444
Q ss_pred hhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCce
Q 040015 1154 PEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDH 1233 (1399)
Q Consensus 1154 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~ 1233 (1399)
+. + ..+++|++|++++|. +..++.....++|+.|++++|. ++.++. +..+++|++
T Consensus 193 ~~-l-------~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------l~~l~~L~~ 247 (466)
T 1o6v_A 193 SV-L-------AKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKDIGT---------------LASLTNLTD 247 (466)
T ss_dssp GG-G-------GGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------GGGCTTCSE
T ss_pred hh-h-------ccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCC-cccchh---------------hhcCCCCCE
Confidence 32 1 257889999998864 4444333334589999998854 555543 345666666
Q ss_pred EeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCC
Q 040015 1234 LEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENL 1313 (1399)
Q Consensus 1234 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 1313 (1399)
|++++|......+ +..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++....+++|+.|++++| .+
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l 321 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NI 321 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CC
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cC
Confidence 6666666443332 5556666666666654 333433 556666777777664 4444443334566666666664 34
Q ss_pred CCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1314 KPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1314 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
+...+ +..+++|++|++++|. +..++ .+..+++|+.|++++|. +..+++ +..+++|++|++++|+
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred CCchh--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 44433 5566777777776653 33333 45566677777777653 444433 6666777777777663
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2e-22 Score=245.08 Aligned_cols=344 Identities=18% Similarity=0.184 Sum_probs=263.4
Q ss_pred CCCCccEEEEccCCCcccCC--CCCCCccEEEEcCCCCc--cCCCCCCcceeEeeccCCCccccccCCCCCcceeeeccc
Q 040015 974 EFPCLLELSILMCPNLVELP--TFLPSLKTLEIDGCQKL--AALPKLPSILELELNNCDGKVLHSTGGHRSLTYMRICQI 1049 (1399)
Q Consensus 974 ~~~~L~~L~l~~~~~l~~l~--~~l~~L~~L~i~~c~~l--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 1049 (1399)
.+++++.|++.++. +..+| ..+++|++|++++|..- ..+..+++|++|++++|.......+..+++|++|++++|
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred HhccccEEecCCCC-CccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC
Confidence 46789999998764 44555 35799999999998632 235678999999999998877667899999999999998
Q ss_pred CCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcc
Q 040015 1050 SKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVA 1129 (1399)
Q Consensus 1050 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~ 1129 (1399)
. +..++. +.++++|++|++++|. +..++ .+..+++|++|+++++ ...++. +..+++|+.|++++|. ++.
T Consensus 123 ~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n~-l~~ 191 (466)
T 1o6v_A 123 Q-ITDIDP--LKNLTNLNRLELSSNT-ISDIS---ALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNK-VSD 191 (466)
T ss_dssp C-CCCCGG--GTTCTTCSEEEEEEEE-ECCCG---GGTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred C-CCCChH--HcCCCCCCEEECCCCc-cCCCh---hhccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCCc-CCC
Confidence 7 555544 8899999999999996 34443 2558999999999743 333433 8899999999999975 666
Q ss_pred cCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCc
Q 040015 1130 FPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPE 1209 (1399)
Q Consensus 1130 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~ 1209 (1399)
++....+++|+.|++++|......+ . ..+++|++|++++| .++.++.....++|+.|++++|. +..++.
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~--~-------~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~ 260 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITP--L-------GILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLAP 260 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG--G-------GGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred ChhhccCCCCCEEEecCCccccccc--c-------cccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCCc-cccchh
Confidence 6666677999999999986444333 1 25788999999996 46666543344599999999965 454443
Q ss_pred cccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCC
Q 040015 1210 QMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSS 1289 (1399)
Q Consensus 1210 ~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 1289 (1399)
+..+++|++|++++|......+ +..+++|+.|++++|. +..++. +..+++|+.|++++| .
T Consensus 261 ---------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~ 320 (466)
T 1o6v_A 261 ---------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-N 320 (466)
T ss_dssp ---------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-C
T ss_pred ---------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-c
Confidence 4678899999999987654333 6778899999999976 455544 778999999999997 5
Q ss_pred CccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc
Q 040015 1290 LMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP 1366 (1399)
Q Consensus 1290 l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 1366 (1399)
+..++.....++|+.|++.+| .++.+ ..+.++++|+.|++++|......| +..+++|+.|++++|+ +..+|
T Consensus 321 l~~~~~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 321 ISDISPVSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp CSCCGGGGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE-EECCC
T ss_pred CCCchhhccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc-ccCCc
Confidence 555554445789999999886 56655 368889999999999987766665 7788999999999964 55555
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.3e-22 Score=246.90 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=81.3
Q ss_pred CcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccc-cc-cccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 587 KCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIK-QL-PDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~-~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
++|++|+|++|.++.+ |..|+++++|++|+|++|.+. .+ |..|.++++|++|++++|......|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999977 788999999999999999886 55 55789999999999999955455578899999999999
Q ss_pred ccCCcccc-cCcc--ccCCCCCCccCc
Q 040015 664 MSGSRLRE-MPMK--MYKLKNLQTLSH 687 (1399)
Q Consensus 664 l~~~~l~~-lp~~--i~~L~~L~~L~~ 687 (1399)
+++|.++. +|.. ++.+++|++|+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L 136 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVL 136 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEEC
Confidence 99998875 3333 566666666543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.9e-22 Score=231.46 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=162.6
Q ss_pred cCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCC
Q 040015 1035 TGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELS 1114 (1399)
Q Consensus 1035 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 1114 (1399)
+..+++|++|++++|. +..++. +..+++|++|++++|. ++.++ .+..+++|++|++++|.. ..++. +..++
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~-i~~~~---~~~~l~~L~~L~l~~n~i-~~~~~-~~~l~ 132 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNK-ITDIS---ALQNLTNLRELYLNEDNI-SDISP-LANLT 132 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC-CCCCG---GGTTCTTCSEEECTTSCC-CCCGG-GTTCT
T ss_pred hhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCc-ccCch---HHcCCCcCCEEECcCCcc-cCchh-hccCC
Confidence 4445566666666554 333333 5566666666666663 23332 234566666666666663 33333 56666
Q ss_pred CccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCC
Q 040015 1115 TLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLK 1194 (1399)
Q Consensus 1115 ~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1194 (1399)
+|++|++++|..+..++.....++|+.|++++|... .++. + ..++ +|+
T Consensus 133 ~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~-------~~l~-----------------------~L~ 180 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-I-------ANLT-----------------------DLY 180 (347)
T ss_dssp TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-G-------GGCT-----------------------TCS
T ss_pred ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-h-------ccCC-----------------------CCC
Confidence 666666666665555555444555555555554322 2211 0 1233 444
Q ss_pred eEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccc
Q 040015 1195 VLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMY 1274 (1399)
Q Consensus 1195 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 1274 (1399)
+|++++|. +..++. +..+++|+.|++++|......+ +..+++|++|++++|. +..++. +.
T Consensus 181 ~L~l~~n~-l~~~~~---------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~-l~~~~~-~~ 240 (347)
T 4fmz_A 181 SLSLNYNQ-IEDISP---------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK-ITDLSP-LA 240 (347)
T ss_dssp EEECTTSC-CCCCGG---------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCGG-GT
T ss_pred EEEccCCc-cccccc---------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc-cCCCcc-hh
Confidence 44444432 333322 2344555555555554332222 4445555555555543 333333 45
Q ss_pred cCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceE
Q 040015 1275 ILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSL 1354 (1399)
Q Consensus 1275 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 1354 (1399)
.+++|+.|++++| .++.++....+++|+.|++++| .++.+ ..+..+++|++|++++|......|..+..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 5666666666654 4444443334456666666654 34444 247788999999999987766666777888999999
Q ss_pred EcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1355 YLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1355 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
++++|+ +..+++ +..+++|++|++++|+
T Consensus 317 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 317 FLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp ECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred EccCCc-cccccC-hhhhhccceeehhhhc
Confidence 999975 777765 8889999999999986
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.2e-21 Score=235.29 Aligned_cols=306 Identities=16% Similarity=0.169 Sum_probs=215.9
Q ss_pred ccceeeeeeeccccccchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCC
Q 040015 530 DKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDL 609 (1399)
Q Consensus 530 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L 609 (1399)
...+++.+..+.... ++.+..+++|+.|.+.++.. ..+| |..+++|++|+|++|.++.+| ++++
T Consensus 42 ~~L~~L~Ls~n~l~~---~~~l~~l~~L~~L~Ls~n~l--------~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNI--------TTLD---LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp TTCCEEECCSSCCCC---CTTGGGCTTCSEEECCSSCC--------SCCC---CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred CCCCEEEccCCCccc---ChhhcccCCCCEEEccCCcC--------CeEc---cccCCCCCEEECcCCCCceee--cCCC
Confidence 456777776654433 34678899999999988753 2344 789999999999999999986 9999
Q ss_pred CCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCc-ccccCccccCCCCCCccCce
Q 040015 610 KHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSR-LREMPMKMYKLKNLQTLSHF 688 (1399)
Q Consensus 610 ~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~ 688 (1399)
++|++|+|++|.++.+| ++++++|++|++++| .+..+| ++++++|++|++++|. +..+ .++.+++|++|+..
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999999987 999999999999999 666675 8999999999999994 5555 46778888877653
Q ss_pred eeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhcCCCCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhcc
Q 040015 689 VVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANLKDKKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRN 768 (1399)
Q Consensus 689 ~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1399)
.+ .+..+ .+..+++|+.|++++|...+
T Consensus 179 ~n------~l~~l---------------------------~l~~l~~L~~L~l~~N~l~~-------------------- 205 (457)
T 3bz5_A 179 FN------KITEL---------------------------DVSQNKLLNRLNCDTNNITK-------------------- 205 (457)
T ss_dssp SS------CCCCC---------------------------CCTTCTTCCEEECCSSCCSC--------------------
T ss_pred CC------cccee---------------------------ccccCCCCCEEECcCCcCCe--------------------
Confidence 22 11110 13455678888887765510
Q ss_pred ccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCCCChhhHHhhhhcCCCCCCCCeEEEeecCCCCCCcCcCC
Q 040015 769 RKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGSGNERVEMDVLEMLQPHENLKQLTINDYGGIKFPGWIAS 848 (1399)
Q Consensus 769 l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 848 (1399)
+ .+..+++|+.|+++++....+| +.
T Consensus 206 ---------------------------------------------------~-~l~~l~~L~~L~Ls~N~l~~ip--~~- 230 (457)
T 3bz5_A 206 ---------------------------------------------------L-DLNQNIQLTFLDCSSNKLTEID--VT- 230 (457)
T ss_dssp ---------------------------------------------------C-CCTTCTTCSEEECCSSCCSCCC--CT-
T ss_pred ---------------------------------------------------e-ccccCCCCCEEECcCCcccccC--cc-
Confidence 0 2455688999999998887776 32
Q ss_pred CCcCceeEEEEeCCCCCCCCCCCCCCCCccceecccCcCceEecccccCCCCCCCCCCCCcceeeeccCCcccccCcCCC
Q 040015 849 PLFCNMTVLVLSNCRNCQFLPSLGRLPMLKDLTIEGMEGIKSVGAEFYGDGSFPLLPFPSLETLKFENMSEWEEWTPSGT 928 (1399)
Q Consensus 849 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 928 (1399)
.+++|+.|++++|.... +| ++.+++|+.|+++++ +|+.|+++++..+..+.
T Consensus 231 -~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n----------------------~L~~L~l~~n~~~~~~~---- 281 (457)
T 3bz5_A 231 -PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQT----------------------DLLEIDLTHNTQLIYFQ---- 281 (457)
T ss_dssp -TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTC----------------------CCSCCCCTTCTTCCEEE----
T ss_pred -ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCC----------------------CCCEEECCCCccCCccc----
Confidence 67899999999987544 33 567788888776543 35566666665444432
Q ss_pred CCCccccccceeccccCCcccccccCCCccceEEEecccccCcCCCCCCccEEEEccCCCcccCC-CCCCCccEEEEcCC
Q 040015 929 EGTEGFLHLQNIEILNCPKLREFSHHFPSLKKMTIYGCEKLEQGSEFPCLLELSILMCPNLVELP-TFLPSLKTLEIDGC 1007 (1399)
Q Consensus 929 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~-~~l~~L~~L~i~~c 1007 (1399)
...+++|+.|++++|+.+..++...+.|+.+++++| ++|+.|++.++. ++.++ ..+++|+.|++++|
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~---------~~L~~L~L~~N~-l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN---------PKLVYLYLNNTE-LTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC---------TTCCEEECTTCC-CSCCCCTTCTTCSEEECCSS
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhc---------ccCCEEECCCCc-ccccccccCCcCcEEECCCC
Confidence 134678888888888888877766666666654443 556666665542 22222 23455555555554
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.9e-22 Score=229.54 Aligned_cols=98 Identities=20% Similarity=0.410 Sum_probs=73.0
Q ss_pred CCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
..+++|+.|++++|.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++| .+..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 456778888888888877764 7778888888888888887776 888888888888887 566665 478888888888
Q ss_pred ccCCcccccCccccCCCCCCccC
Q 040015 664 MSGSRLREMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 664 l~~~~l~~lp~~i~~L~~L~~L~ 686 (1399)
+++|.+..+|. +..+++|++|+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEE
T ss_pred CcCCcccCchh-hccCCceeEEE
Confidence 88887776654 55555555443
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.6e-21 Score=234.50 Aligned_cols=293 Identities=21% Similarity=0.269 Sum_probs=152.7
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEE
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVL 1119 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 1119 (1399)
+++.|++++|. +..++...|.++++|++|++++|......+.. +..+++|++|+|++|......+..+.++++|++|
T Consensus 33 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhh--hhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 44444444443 33333334555555555555555322221221 2345555555555555322222334555555555
Q ss_pred EEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc--cCCCCeE
Q 040015 1120 RISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL--SGTLKVL 1196 (1399)
Q Consensus 1120 ~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 1196 (1399)
++++|......+ .+..+++|+.|++++|.. ..++...+ ..+++|++|++++| .++.++...+ .++|+.|
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAF------SGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSS------TTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred ECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhc------cCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence 555543222111 122334555555554322 22211111 13445555555553 3444432211 1366666
Q ss_pred eeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc-ccccc
Q 040015 1197 EIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP-NGMYI 1275 (1399)
Q Consensus 1197 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~ 1275 (1399)
+++++ .+..++... |..+++|++|++++|...+.++.......+|+.|++++|. ++.+| ..+..
T Consensus 182 ~l~~n-~i~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 246 (477)
T 2id5_A 182 RLRHL-NINAIRDYS-------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRH 246 (477)
T ss_dssp EEESC-CCCEECTTC-------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTT
T ss_pred eCCCC-cCcEeChhh-------------cccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcC
Confidence 66663 344443322 5677778888888777777777666666678888887764 44555 34667
Q ss_pred CCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcce
Q 040015 1276 LTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSS 1353 (1399)
Q Consensus 1276 l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 1353 (1399)
+++|+.|++++| .++.++...+ .++|+.|++.+ +.++.+.+..|..+++|++|+|++|......+..+..+++|+.
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 247 LVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred ccccCeeECCCC-cCCccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 777888888775 4555554322 35677777665 3455555556666777777777765433322234556667777
Q ss_pred EEcCCCC
Q 040015 1354 LYLERLP 1360 (1399)
Q Consensus 1354 L~l~~~~ 1360 (1399)
|++++|+
T Consensus 325 L~l~~N~ 331 (477)
T 2id5_A 325 LILDSNP 331 (477)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 7777654
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.1e-21 Score=227.95 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=81.9
Q ss_pred cccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhC
Q 040015 1033 HSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYE 1112 (1399)
Q Consensus 1033 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 1112 (1399)
..+..+++|+.|++++|. +..+....+..+++|+.|++++|. ++.++.. ...+++|++|++++|+ +..+|..+..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~ 316 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNLY--GQPIPTLKVLDLSHNH-LLHVERNQPQ 316 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSC-CCEEECS--SSCCTTCCEEECCSSC-CCCCGGGHHH
T ss_pred HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCc-CcccCcc--cCCCCCCCEEECCCCc-ceecCccccc
Confidence 455667788888888876 455555668888999999999885 3444433 2478899999999997 5577777888
Q ss_pred CCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCc
Q 040015 1113 LSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEA 1149 (1399)
Q Consensus 1113 l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~ 1149 (1399)
+++|++|++++|+ ++.++ ....++|+.|++++|+.
T Consensus 317 l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp HTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCE
T ss_pred cCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCCc
Confidence 9999999999865 55554 44557888888888754
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=8.1e-21 Score=225.45 Aligned_cols=304 Identities=15% Similarity=0.115 Sum_probs=179.3
Q ss_pred CCcceeEeeccCCCccccc--cCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhccccccccc
Q 040015 1016 LPSILELELNNCDGKVLHS--TGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQ 1093 (1399)
Q Consensus 1016 l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1093 (1399)
+++++.|++.++.....+. +..+++|++|++++|. +..++...|..+++|++|++++|......+. .+..+++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH--VFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHH--HhcCCCCCC
Confidence 4566667766655443332 4556667777776665 4455555566666777777766653222222 233566677
Q ss_pred EEEeecCCCcccchh-hhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCc
Q 040015 1094 RLEISECPYFKELPE-KFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLL 1170 (1399)
Q Consensus 1094 ~L~L~~~~~~~~l~~-~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L 1170 (1399)
+|++++|... .+|. .+..+++|++|++++|. ++.++. +...++|+.|++++|. ++.++. ..+++|
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------~~l~~L 188 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDL---------SLIPSL 188 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---------GGCTTC
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCcccc---------cccccc
Confidence 7777666633 4443 34666667777776653 333322 3444666666666653 222221 134556
Q ss_pred ceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCC
Q 040015 1171 EYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCL 1250 (1399)
Q Consensus 1171 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 1250 (1399)
+.|+++++ .+..++ .+.+|+.|++++| .+..++. ...++|++|++++|..... ..+.
T Consensus 189 ~~L~l~~n-~l~~~~---~~~~L~~L~l~~n-~l~~~~~----------------~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 189 FHANVSYN-LLSTLA---IPIAVEELDASHN-SINVVRG----------------PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SEEECCSS-CCSEEE---CCSSCSEEECCSS-CCCEEEC----------------CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ceeecccc-cccccC---CCCcceEEECCCC-eeeeccc----------------cccccccEEECCCCCCccc--HHHc
Confidence 66666653 333322 2335666666663 3444432 2346788888888775432 3456
Q ss_pred CCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCC-CCCCcceEEeccCCCCCCCcccccccCCCccE
Q 040015 1251 PTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG-LPPNLISLSILDCENLKPSSEWGLHRLTCLAD 1329 (1399)
Q Consensus 1251 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~ 1329 (1399)
.+++|+.|++++|......|..+..+++|+.|++++| .++.+|... ..++|+.|++++| .++.++. .+..+++|++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~ 322 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLEN 322 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc-cccccCcCCE
Confidence 6778888888887655555677777888888888875 566665432 3567777777775 4554443 3567788888
Q ss_pred EEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCc
Q 040015 1330 FSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKS 1364 (1399)
Q Consensus 1330 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 1364 (1399)
|++++|.. ..++ +..+++|+.|++++|+ +.+
T Consensus 323 L~L~~N~i-~~~~--~~~~~~L~~L~l~~N~-~~~ 353 (390)
T 3o6n_A 323 LYLDHNSI-VTLK--LSTHHTLKNLTLSHND-WDC 353 (390)
T ss_dssp EECCSSCC-CCCC--CCTTCCCSEEECCSSC-EEH
T ss_pred EECCCCcc-ceeC--chhhccCCEEEcCCCC-ccc
Confidence 88888653 4444 4567788888888854 544
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.1e-20 Score=234.28 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=84.1
Q ss_pred ccccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhh
Q 040015 1032 LHSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFY 1111 (1399)
Q Consensus 1032 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 1111 (1399)
...+..+++|+.|++++|. +..+.+..|.++++|+.|++++|. ++.++.. ...+++|+.|+|++|.. ..+|..+.
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~Ls~N~l-~~i~~~~~ 321 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNLY--GQPIPTLKVLDLSHNHL-LHVERNQP 321 (597)
T ss_dssp CGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCEEECS--SSCCTTCCEEECCSSCC-CCCGGGHH
T ss_pred ChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCCCCcc--cccCCCCcEEECCCCCC-CccCcccc
Confidence 3456677888888888887 555555668889999999999986 4444443 24689999999999984 57888888
Q ss_pred CCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCcc
Q 040015 1112 ELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEAL 1150 (1399)
Q Consensus 1112 ~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l 1150 (1399)
.+++|+.|++++|. ++.++ ....++|+.|++++|+.-
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCC
Confidence 99999999999975 44454 445578888888887643
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=9.2e-20 Score=222.91 Aligned_cols=297 Identities=21% Similarity=0.261 Sum_probs=195.0
Q ss_pred CcccCCCC-CCCccEEEEcCCCCc----cCCCCCCcceeEeeccCCCcc--ccccCCCCCcceeeecccCCccccccccc
Q 040015 988 NLVELPTF-LPSLKTLEIDGCQKL----AALPKLPSILELELNNCDGKV--LHSTGGHRSLTYMRICQISKLDCLVEGYF 1060 (1399)
Q Consensus 988 ~l~~l~~~-l~~L~~L~i~~c~~l----~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 1060 (1399)
.++.+|.. .++++.|++++|..- ..+..+++|++|++++|.... +..+.++++|++|++++|. +..++...|
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 34455543 356778888776532 234567777777777765443 3456777888888887776 566666667
Q ss_pred ccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCC
Q 040015 1061 QHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPST 1138 (1399)
Q Consensus 1061 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~ 1138 (1399)
.++++|+.|++++|......+. .+..+++|++|++++|......+..+..+++|++|++++| .++.++. +..+++
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred cCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence 7788888888888764333332 2447778888888888765555667777888888888875 3444442 344577
Q ss_pred cceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccccc-CCCCeEeeecCCCCCccCccccccccc
Q 040015 1139 LVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLS-GTLKVLEIENCGNLQSLPEQMICSSLE 1217 (1399)
Q Consensus 1139 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1217 (1399)
|+.|++++|.. ..++...+ ..+++|++|++++|+.+..++...+. .+|++|++++| .++.+|...
T Consensus 178 L~~L~l~~n~i-~~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~------ 243 (477)
T 2id5_A 178 LIVLRLRHLNI-NAIRDYSF------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLA------ 243 (477)
T ss_dssp CCEEEEESCCC-CEECTTCS------CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHH------
T ss_pred CcEEeCCCCcC-cEeChhhc------ccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHH------
Confidence 88888877643 33333222 25677888888877777766654332 37888888874 466665433
Q ss_pred cceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCC
Q 040015 1218 NLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG 1297 (1399)
Q Consensus 1218 ~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~ 1297 (1399)
+.++++|++|++++|......+..+..+++|+.|+|++|......|..+..+++|+.|++++| .++.++...
T Consensus 244 -------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 244 -------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp -------HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred -------hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 567788888888888766555566777788888888887655555667777888888888775 566665532
Q ss_pred C--CCCcceEEeccC
Q 040015 1298 L--PPNLISLSILDC 1310 (1399)
Q Consensus 1298 ~--~~~L~~L~l~~c 1310 (1399)
+ .++|+.|++.++
T Consensus 316 ~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 316 FHSVGNLETLILDSN 330 (477)
T ss_dssp BSCGGGCCEEECCSS
T ss_pred cCCCcccCEEEccCC
Confidence 2 345666666553
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-20 Score=232.77 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=192.0
Q ss_pred CCcceeEeeccCCCcccc--ccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhccccccccc
Q 040015 1016 LPSILELELNNCDGKVLH--STGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQ 1093 (1399)
Q Consensus 1016 l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 1093 (1399)
+.+++.+++.++.....+ .+..+++|++|++++|. +..++...|..+++|+.|++++|... .++.. .+..+++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPH-VFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCC-CCCHH-HHcCCCCCC
Confidence 455666777666543332 24557777777777776 55555556777777777777777533 33221 234677777
Q ss_pred EEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcce
Q 040015 1094 RLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEY 1172 (1399)
Q Consensus 1094 ~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~ 1172 (1399)
+|+|++|......+..|..+++|++|++++|......+ .+..+++|+.|++++|. ++.++. ..+++|+.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------~~l~~L~~ 196 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---------SLIPSLFH 196 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG---------GGCTTCSE
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh---------hhhhhhhh
Confidence 77777776443333345677777777777754333222 24455677777777753 333322 13556777
Q ss_pred EEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCC
Q 040015 1173 LVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPT 1252 (1399)
Q Consensus 1173 L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 1252 (1399)
|+++++ .+..++ .+.+|+.|++++| .+..++.. ..++|+.|++++|.... +..+..+
T Consensus 197 L~l~~n-~l~~l~---~~~~L~~L~ls~n-~l~~~~~~----------------~~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 197 ANVSYN-LLSTLA---IPIAVEELDASHN-SINVVRGP----------------VNVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp EECCSS-CCSEEE---CCTTCSEEECCSS-CCCEEECS----------------CCSCCCEEECCSSCCCC--CGGGGGC
T ss_pred hhcccC-cccccc---CCchhheeeccCC-cccccccc----------------cCCCCCEEECCCCCCCC--ChhhccC
Confidence 777663 333332 3346777777764 34444332 23678888888887554 2456677
Q ss_pred CCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCC-CCCCcceEEeccCCCCCCCcccccccCCCccEEE
Q 040015 1253 SMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG-LPPNLISLSILDCENLKPSSEWGLHRLTCLADFS 1331 (1399)
Q Consensus 1253 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~ 1331 (1399)
++|+.|+|++|......|..+..+++|+.|+|++| .+..+|... ..++|+.|++++| .++.++. .+..+++|++|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~l~~L~~L~ 330 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLENLY 330 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSEEE
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc-ccccCCCCCEEE
Confidence 88888888887765566777888888888888885 666666542 2578888888775 4554443 457788899999
Q ss_pred EcCCCCccccCCCCCCCCCcceEEcCCCC
Q 040015 1332 FGGCQGLVSFPKGWFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1332 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 1360 (1399)
+++|.. ..+| +..+++|+.|++++|+
T Consensus 331 L~~N~l-~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 331 LDHNSI-VTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCC-CCcC--hhhcCCCCEEEeeCCC
Confidence 988764 3343 5567888999999865
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=3.1e-18 Score=198.06 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=150.6
Q ss_pred CccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEE
Q 040015 1064 TALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLE 1143 (1399)
Q Consensus 1064 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~ 1143 (1399)
++|+.|++++|.. +.++.. .+..+++|++|++++|......|..+..+++|++|++++| .++.+|.... ++|+.|+
T Consensus 54 ~~l~~L~l~~n~i-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDI-SELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP-SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCC-CEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC-TTCCEEE
T ss_pred CCCeEEECCCCcC-CccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc-ccCCEEE
Confidence 4566666666643 222211 2346677777777777755555666777777777777774 3445554322 6777777
Q ss_pred EcCCCccccchhhhccccccCcccCCcceEEecCCCCCCc--cCccccc-CCCCeEeeecCCCCCccCccccccccccce
Q 040015 1144 IRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVS--LPRDKLS-GTLKVLEIENCGNLQSLPEQMICSSLENLK 1220 (1399)
Q Consensus 1144 l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1220 (1399)
+++|. ++.++...+. .+++|++|+++++ .++. +....+. .+|+.|++++| .++.+|...
T Consensus 130 l~~n~-i~~~~~~~~~------~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n-~l~~l~~~~--------- 191 (332)
T 2ft3_A 130 IHDNR-IRKVPKGVFS------GLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL--------- 191 (332)
T ss_dssp CCSSC-CCCCCSGGGS------SCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSS-BCSSCCSSS---------
T ss_pred CCCCc-cCccCHhHhC------CCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCC-CCCccCccc---------
Confidence 77653 3344433322 4666777777664 2321 1111111 15666666663 344454321
Q ss_pred eccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCC
Q 040015 1221 VAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPP 1300 (1399)
Q Consensus 1221 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 1300 (1399)
.++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++| .++.+|.
T Consensus 192 -------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~----- 258 (332)
T 2ft3_A 192 -------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA----- 258 (332)
T ss_dssp -------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT-----
T ss_pred -------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecCh-----
Confidence 256666666666655544455666666777777665433333345566666666666664 4444443
Q ss_pred CcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCC------CCCcceEEcCCCCCC--CccccccCCC
Q 040015 1301 NLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFL------PKNLSSLYLERLPNL--KSLPNGLKNL 1372 (1399)
Q Consensus 1301 ~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~l--~~l~~~~~~l 1372 (1399)
.+..+++|++|++++|.....-+..+.. .++|+.|++++|+.. ...|..+..+
T Consensus 259 -------------------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 259 -------------------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp -------------------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred -------------------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 2556677777777775533322223322 467889999997643 2334678889
Q ss_pred CCcCceeccCCC
Q 040015 1373 KYLETLEIWECD 1384 (1399)
Q Consensus 1373 ~~L~~L~l~~c~ 1384 (1399)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999998875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.5e-18 Score=196.64 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=102.8
Q ss_pred ccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF 1245 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~ 1245 (1399)
.+++|++|+++++ .++.+|.... ++|++|++++|. ++.++... +..+++|++|++++|......
T Consensus 169 ~l~~L~~L~l~~n-~l~~l~~~~~-~~L~~L~l~~n~-l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 169 GMKKLSYIRIADT-NITTIPQGLP-PSLTELHLDGNK-ITKVDAAS-------------LKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp GCTTCCEEECCSS-CCCSCCSSCC-TTCSEEECTTSC-CCEECTGG-------------GTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCcCEEECCCC-ccccCCcccc-ccCCEEECCCCc-CCccCHHH-------------hcCCCCCCEEECCCCcCceeC
Confidence 3555666666663 4555554433 477888887753 44443222 567888888888888766655
Q ss_pred CCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCC
Q 040015 1246 PEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLT 1325 (1399)
Q Consensus 1246 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~ 1325 (1399)
+..+..+++|+.|++++|. +..+|.++..+++|++|++++| .++.++...+.... .....+
T Consensus 233 ~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~-----------------~~~~~~ 293 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPG-----------------YNTKKA 293 (330)
T ss_dssp TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSS-----------------CCTTSC
T ss_pred hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChhhcCCcc-----------------cccccc
Confidence 6667778888888888864 5678888888888888888885 56666654332110 011245
Q ss_pred CccEEEEcCCCCcc--ccCCCCCCCCCcceEEcCCC
Q 040015 1326 CLADFSFGGCQGLV--SFPKGWFLPKNLSSLYLERL 1359 (1399)
Q Consensus 1326 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~ 1359 (1399)
.|+.|++++|+... ..|..|..+++|+.+++++|
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccceEeecCcccccccCccccccccceeEEEeccc
Confidence 67788888876532 34556777888888888875
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.9e-20 Score=234.80 Aligned_cols=216 Identities=20% Similarity=0.174 Sum_probs=137.4
Q ss_pred CCCCCccEEEEccCCCccc---CC---------------CCCCCccEEEEcCCCCc----cCCCC-CCc-ceeEeeccCC
Q 040015 973 SEFPCLLELSILMCPNLVE---LP---------------TFLPSLKTLEIDGCQKL----AALPK-LPS-ILELELNNCD 1028 (1399)
Q Consensus 973 ~~~~~L~~L~l~~~~~l~~---l~---------------~~l~~L~~L~i~~c~~l----~~l~~-l~~-L~~L~l~~~~ 1028 (1399)
..|++|++|++.+|+.+.. +| ..+++|++|++++|..- ..+.. ++. |++|++.+|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 3688999999999887542 11 14788999999988421 11112 344 8999998887
Q ss_pred Cccccc----cCCCCCcceeeecccCCcccc---cccccccCCccceeeeccchhh----hhhhhhhcccccccccEEEe
Q 040015 1029 GKVLHS----TGGHRSLTYMRICQISKLDCL---VEGYFQHFTALEELQISHLAEL----MTLSNKIGLRSLLSLQRLEI 1097 (1399)
Q Consensus 1029 ~~~~~~----~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l----~~~~~~~~~~~l~~L~~L~L 1097 (1399)
...... ...+++|++|++++|.....- ....+.++++|++|++++|... ..++. .+..+++|++|++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--~~~~~~~L~~L~L 227 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET--IARNCRSLVSVKV 227 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH--HHHHCTTCCEEEC
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH--HHhhCCCCcEEec
Confidence 433222 236789999999888632221 2224567889999999888642 22222 2346789999999
Q ss_pred ecCCCcccchhhhhCCCCccEEEEecCCCCcc----cCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceE
Q 040015 1098 SECPYFKELPEKFYELSTLKVLRISNCPSLVA----FPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYL 1173 (1399)
Q Consensus 1098 ~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~----~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L 1173 (1399)
++|. ...+|..+..+++|++|+++.+..... ......+++|+.|.++++ ....++... ..+++|++|
T Consensus 228 ~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~-------~~~~~L~~L 298 (592)
T 3ogk_B 228 GDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF-------PFAAQIRKL 298 (592)
T ss_dssp SSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG-------GGGGGCCEE
T ss_pred cCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH-------hhcCCCcEE
Confidence 9887 445778888899999999986433211 113445578888888774 233333322 246678888
Q ss_pred EecCCCCCCccCcc---cccCCCCeEeeec
Q 040015 1174 VIEGCPALVSLPRD---KLSGTLKVLEIEN 1200 (1399)
Q Consensus 1174 ~l~~c~~l~~l~~~---~~~~~L~~L~l~~ 1200 (1399)
++++|. +...... ...++|++|++++
T Consensus 299 ~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 299 DLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp EETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 888876 4322210 1123788888774
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.9e-17 Score=191.42 Aligned_cols=284 Identities=15% Similarity=0.188 Sum_probs=154.9
Q ss_pred cceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEE
Q 040015 1041 LTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLR 1120 (1399)
Q Consensus 1041 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 1120 (1399)
++.++++++. +..++... .++|+.|++++|.. +.++.. .+..+++|++|++++|......|..+..+++|++|+
T Consensus 33 l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n~i-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 33 LRVVQCSDLG-LEKVPKDL---PPDTALLDLQNNKI-TEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TTEEECTTSC-CCSCCCSC---CTTCCEEECCSSCC-CCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CeEEEecCCC-ccccCccC---CCCCeEEECCCCcC-CEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4444444443 33343322 25677777777753 333321 244778888888888886655577788888888888
Q ss_pred EecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCc--cCcccc--cCCCCeE
Q 040015 1121 ISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVS--LPRDKL--SGTLKVL 1196 (1399)
Q Consensus 1121 ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~--~~~L~~L 1196 (1399)
+++|. ++.+|... .++|+.|++++|. ++.++...+. .+++|++|+++++. +.. +....+ .++|+.|
T Consensus 107 Ls~n~-l~~l~~~~-~~~L~~L~l~~n~-l~~~~~~~~~------~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 107 LSKNQ-LKELPEKM-PKTLQELRVHENE-ITKVRKSVFN------GLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CCSSC-CSBCCSSC-CTTCCEEECCSSC-CCBBCHHHHT------TCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCc-CCccChhh-cccccEEECCCCc-ccccCHhHhc------CCccccEEECCCCc-CCccCcChhhccCCCCcCEE
Confidence 88854 55666432 3678888887764 3334333322 45666666666642 221 111111 1245555
Q ss_pred eeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccC
Q 040015 1197 EIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYIL 1276 (1399)
Q Consensus 1197 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l 1276 (1399)
++++| .++.+|... .++|++|++++|......+..+..+++|+.|++++|......+..+..+
T Consensus 177 ~l~~n-~l~~l~~~~----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 177 RIADT-NITTIPQGL----------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp ECCSS-CCCSCCSSC----------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ECCCC-ccccCCccc----------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 55542 233333221 1445555555554433334444445555555555543222222334444
Q ss_pred CCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCCC------CCC
Q 040015 1277 TSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGWF------LPK 1349 (1399)
Q Consensus 1277 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~------~l~ 1349 (1399)
++|+.|++++| .++.+|. .+..+++|++|++++|.. ..+| ..|. ..+
T Consensus 240 ~~L~~L~L~~N-~l~~lp~------------------------~l~~l~~L~~L~l~~N~i-~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPG------------------------GLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TTCCEEECCSS-CCSSCCT------------------------TTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSC
T ss_pred CCCCEEECCCC-cCccCCh------------------------hhccCCCcCEEECCCCcC-CccChhhcCCcccccccc
Confidence 55555555443 3333332 356677888888888654 3333 2332 247
Q ss_pred CcceEEcCCCCCCCc--c-ccccCCCCCcCceeccCCC
Q 040015 1350 NLSSLYLERLPNLKS--L-PNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1350 ~L~~L~l~~~~~l~~--l-~~~~~~l~~L~~L~l~~c~ 1384 (1399)
+|+.|++++|+ +.. + |..+..+.+|+.+++++|+
T Consensus 294 ~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 89999999976 433 3 3678889999999999873
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=6.9e-18 Score=195.14 Aligned_cols=292 Identities=20% Similarity=0.189 Sum_probs=169.7
Q ss_pred CccEEEEcCCCCccCCCC--CCcceeEeeccCCCccc--cccCCCCCcceeeecccCCcccccccccccCCccceeeecc
Q 040015 998 SLKTLEIDGCQKLAALPK--LPSILELELNNCDGKVL--HSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISH 1073 (1399)
Q Consensus 998 ~L~~L~i~~c~~l~~l~~--l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 1073 (1399)
+++.++++++. ++.+|. .++++.|++++|..... ..+..+++|++|++++|. +..+.+..|.++++|++|++++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCC-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence 57777777753 444442 34566666655544332 235555556666665554 3334334455555555555555
Q ss_pred chhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccc
Q 040015 1074 LAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFL 1153 (1399)
Q Consensus 1074 ~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 1153 (1399)
|. ++.++.. ..++|++|++++|......+..+..+++|++|++++|.. +.. ...
T Consensus 112 n~-l~~l~~~----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~--------------------~~~ 165 (332)
T 2ft3_A 112 NH-LVEIPPN----LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL-ENS--------------------GFE 165 (332)
T ss_dssp SC-CCSCCSS----CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC-BGG--------------------GSC
T ss_pred Cc-CCccCcc----ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc-ccC--------------------CCC
Confidence 53 2233322 124555555555553333333455555555555555432 110 011
Q ss_pred hhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCce
Q 040015 1154 PEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDH 1233 (1399)
Q Consensus 1154 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~ 1233 (1399)
+..+ ..+ +|++|+++++ .++.+|.... ++|++|++++| .+..++... +..+++|++
T Consensus 166 ~~~~-------~~l-~L~~L~l~~n-~l~~l~~~~~-~~L~~L~l~~n-~i~~~~~~~-------------l~~l~~L~~ 221 (332)
T 2ft3_A 166 PGAF-------DGL-KLNYLRISEA-KLTGIPKDLP-ETLNELHLDHN-KIQAIELED-------------LLRYSKLYR 221 (332)
T ss_dssp TTSS-------CSC-CCSCCBCCSS-BCSSCCSSSC-SSCSCCBCCSS-CCCCCCTTS-------------STTCTTCSC
T ss_pred cccc-------cCC-ccCEEECcCC-CCCccCcccc-CCCCEEECCCC-cCCccCHHH-------------hcCCCCCCE
Confidence 1111 112 4666666663 4555554433 48999999885 455554332 678899999
Q ss_pred EeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCC
Q 040015 1234 LEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENL 1313 (1399)
Q Consensus 1234 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l 1313 (1399)
|++++|......+..+..+++|+.|++++|. +..+|.++..+++|+.|++++| .++.++...+....
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~----------- 288 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG----------- 288 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-----------
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCC-CCCccChhHccccc-----------
Confidence 9999998776666678889999999999975 6689999999999999999995 67777764332110
Q ss_pred CCCcccccccCCCccEEEEcCCCCc--cccCCCCCCCCCcceEEcCCCC
Q 040015 1314 KPSSEWGLHRLTCLADFSFGGCQGL--VSFPKGWFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1314 ~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 1360 (1399)
.....+.|+.|++++|+.. ...|..|..+++|+.|++++|.
T Consensus 289 ------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 ------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ------cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0011355667777766544 3344556667777777777653
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.1e-17 Score=206.48 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=55.8
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCC
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGS 667 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~ 667 (1399)
++++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|++++| .+..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 46777777777777776665 677777777777777776 5677777777777 5666765 6677777777777
Q ss_pred cccccCc
Q 040015 668 RLREMPM 674 (1399)
Q Consensus 668 ~l~~lp~ 674 (1399)
.++.+|.
T Consensus 112 ~l~~l~~ 118 (622)
T 3g06_A 112 PLTHLPA 118 (622)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 7766654
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.7e-18 Score=195.11 Aligned_cols=232 Identities=23% Similarity=0.356 Sum_probs=154.2
Q ss_pred ccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC-CCCCCCcceEEEcCCCccccchhhhccccccCcc
Q 040015 1088 SLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE-MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKD 1166 (1399)
Q Consensus 1088 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 1166 (1399)
..+.++.|++++|. ++.+|..+..+++|++|++++|. ++.+|. ++.+++|+.|++++|. ++.+|..+. .
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~-------~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIA-------S 148 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGG-------G
T ss_pred cccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHh-------c
Confidence 34677777777777 34667667777777777777754 335542 3344555666665542 224443221 2
Q ss_pred cCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccC
Q 040015 1167 AFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFP 1246 (1399)
Q Consensus 1167 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~ 1246 (1399)
++ +|++|++++|+.++.+|.... ...+.+.+.++++|++|++++|... .+|
T Consensus 149 l~-----------------------~L~~L~L~~n~~~~~~p~~~~-----~~~~~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 149 LN-----------------------RLRELSIRACPELTELPEPLA-----STDASGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp CT-----------------------TCCEEEEEEETTCCCCCSCSE-----EEC-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred Cc-----------------------CCCEEECCCCCCccccChhHh-----hccchhhhccCCCCCEEECcCCCcC-cch
Confidence 33 444455555444444443221 1122233566788888888887644 677
Q ss_pred CCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1247 EPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1247 ~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
..+..+++|++|++++|. +..+|..+..+++|+.|++++|+....+|. .+..+++
T Consensus 200 ~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------------------------~~~~l~~ 254 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP------------------------IFGGRAP 254 (328)
T ss_dssp GGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC------------------------CTTCCCC
T ss_pred HhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH------------------------HhcCCCC
Confidence 777778888888888865 456777777888888888888766655553 2456777
Q ss_pred ccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCC
Q 040015 1327 LADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1327 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 1383 (1399)
|++|++++|+....+|..+..+++|+.|++++|+.++.+|..+.++++|+.+++...
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 888888888888888888888888888888888888888888888888888887754
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.5e-19 Score=228.21 Aligned_cols=404 Identities=14% Similarity=0.060 Sum_probs=243.1
Q ss_pred cCCCccceEEEecccccCcC-------C------------CCCCccEEEEccCCCcc-----cCCCCCCC-ccEEEEcCC
Q 040015 953 HHFPSLKKMTIYGCEKLEQG-------S------------EFPCLLELSILMCPNLV-----ELPTFLPS-LKTLEIDGC 1007 (1399)
Q Consensus 953 ~~~~~L~~L~l~~~~~l~~~-------~------------~~~~L~~L~l~~~~~l~-----~l~~~l~~-L~~L~i~~c 1007 (1399)
..+++|+.|++.+|....+. + .+++|++|++.+|. +. .+...++. |++|++++|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCC
Confidence 45778999999988754311 1 57899999999884 33 12222445 999999999
Q ss_pred CCcc--CC----CCCCcceeEeeccCCCccc------cccCCCCCcceeeecccCCc---ccccccccccCCccceeeec
Q 040015 1008 QKLA--AL----PKLPSILELELNNCDGKVL------HSTGGHRSLTYMRICQISKL---DCLVEGYFQHFTALEELQIS 1072 (1399)
Q Consensus 1008 ~~l~--~l----~~l~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~l~~L~~L~l~ 1072 (1399)
..+. .+ ..+++|++|++++|..... .....+++|++|++++|... .......+.++++|+.|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 7542 12 2578999999998864221 23356899999999988743 12223346788999999999
Q ss_pred cchhhhhhhhhhcccccccccEEEeecCCCc---ccchhhhhCCCCccEEEEecCCCCcccCC-CCCCCCcceEEEcCCC
Q 040015 1073 HLAELMTLSNKIGLRSLLSLQRLEISECPYF---KELPEKFYELSTLKVLRISNCPSLVAFPE-MGLPSTLVGLEIRSCE 1148 (1399)
Q Consensus 1073 ~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~---~~l~~~~~~l~~L~~L~ls~c~~l~~~~~-~~~~~~L~~L~l~~c~ 1148 (1399)
+|.. ..++.. +..+++|++|+++.+... ...+..+..+++|+.|+++++. ...++. ....++|+.|++++|.
T Consensus 229 ~~~~-~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 229 DFEI-LELVGF--FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SCBG-GGGHHH--HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred CccH-HHHHHH--HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence 9864 345543 447899999999865433 2233457788999999998853 333442 3446899999999987
Q ss_pred ccccchh-hhccccccCcccCCcceEEecCCCCCCccCcc-cccCCCCeEeeec----------CCCCCccCcccccccc
Q 040015 1149 ALQFLPE-KMMHESQKNKDAFLLEYLVIEGCPALVSLPRD-KLSGTLKVLEIEN----------CGNLQSLPEQMICSSL 1216 (1399)
Q Consensus 1149 ~l~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~----------c~~l~~l~~~~~~~~L 1216 (1399)
++.... ... ..+++|++|++.++-.-..++.. ...++|++|++++ |+.++.......
T Consensus 305 -l~~~~~~~~~------~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---- 373 (592)
T 3ogk_B 305 -LETEDHCTLI------QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---- 373 (592)
T ss_dssp -CCHHHHHHHH------TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH----
T ss_pred -CCHHHHHHHH------HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH----
Confidence 432221 111 36889999999843111111111 1124899999995 777664321110
Q ss_pred ccceeccccCCCCCCceEeecCCCCCcccCCCCCC-CCCccceeccc---ccCCccCc------cccccCCCcceEeecC
Q 040015 1217 ENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLP-TSMLRYARISN---CQNLKFLP------NGMYILTSLQEFSIHG 1286 (1399)
Q Consensus 1217 ~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~---c~~l~~lp------~~~~~l~~L~~L~l~~ 1286 (1399)
+.++++|++|++..|......+..+.. +++|+.|++++ |+.++..| ..+.++++|+.|++++
T Consensus 374 --------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 374 --------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp --------HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred --------HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 234667777777544443333222222 56677777763 44555432 2244577777777766
Q ss_pred CCC-CccCCC---CCCCCCcceEEeccCCCCCC-CcccccccCCCccEEEEcCCCCccc-cCCCCCCCCCcceEEcCCCC
Q 040015 1287 CSS-LMSFPE---GGLPPNLISLSILDCENLKP-SSEWGLHRLTCLADFSFGGCQGLVS-FPKGWFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1287 c~~-l~~l~~---~~~~~~L~~L~l~~c~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~ 1360 (1399)
|.. +..-.. ....++|+.|++.+|. +++ .....+..+++|++|+|++|..... ++.....+++|+.|++++|+
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 543 221000 0124667777776653 432 1223345677788888887763221 23223456778888888865
Q ss_pred CCCccc--cccCCCCCcCceeccC
Q 040015 1361 NLKSLP--NGLKNLKYLETLEIWE 1382 (1399)
Q Consensus 1361 ~l~~l~--~~~~~l~~L~~L~l~~ 1382 (1399)
++... .....++.|....+..
T Consensus 525 -it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 525 -ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp -CCTTCTTGGGGCCTTEEEEEECC
T ss_pred -CCHHHHHHHHHhCCCcEEEEecC
Confidence 44321 2223455555444433
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=3.4e-17 Score=202.07 Aligned_cols=258 Identities=29% Similarity=0.314 Sum_probs=177.6
Q ss_pred CccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEE
Q 040015 1064 TALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLE 1143 (1399)
Q Consensus 1064 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~ 1143 (1399)
.+++.|++++|. ++.+|... .++|++|++++|. ++.+|. .+++|++|++++|. ++.+|. .+++|+.|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l----~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCL----PAHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCC----CTTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhh----CCCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEE
Confidence 357888888775 44555432 3678888888887 446665 56788888888854 666665 567888888
Q ss_pred EcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceecc
Q 040015 1144 IRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAG 1223 (1399)
Q Consensus 1144 l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 1223 (1399)
+++| .++.+|. .+++|+.|++++| .++.+|.. .++|++|++++| .++.+|.
T Consensus 108 Ls~N-~l~~l~~----------~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~-------------- 158 (622)
T 3g06_A 108 IFSN-PLTHLPA----------LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPA-------------- 158 (622)
T ss_dssp ECSC-CCCCCCC----------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCC--------------
T ss_pred CcCC-cCCCCCC----------CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCC-cCCCcCC--------------
Confidence 8775 3444543 2456888888774 56666643 247888888875 4555543
Q ss_pred ccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcc
Q 040015 1224 CLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLI 1303 (1399)
Q Consensus 1224 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1303 (1399)
.+++|+.|++++|.. ..+| ..+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|. .+++|+
T Consensus 159 ---~~~~L~~L~L~~N~l-~~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~ 224 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQL-TSLP---MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLK 224 (622)
T ss_dssp ---CCTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCC
T ss_pred ---ccCCCCEEECCCCCC-CCCc---ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC--CCCCCC
Confidence 245677788877764 3455 345778888888754 555665 3577888888774 6777775 467888
Q ss_pred eEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCC
Q 040015 1304 SLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1304 ~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 1383 (1399)
.|++++| +++.++ ..+++|++|++++| .+..+|. .+++|+.|++++| .++.+|..+.++++|+.|++++|
T Consensus 225 ~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 225 ELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp EEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred EEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 8888764 555554 34578888888886 4556775 5678888888885 57788877888888888888888
Q ss_pred CCC
Q 040015 1384 DNL 1386 (1399)
Q Consensus 1384 ~~l 1386 (1399)
+--
T Consensus 295 ~l~ 297 (622)
T 3g06_A 295 PLS 297 (622)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2.3e-18 Score=196.61 Aligned_cols=139 Identities=15% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCCC-CCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcce
Q 040015 1226 HNLA-FLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLIS 1304 (1399)
Q Consensus 1226 ~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 1304 (1399)
..++ +|++|++++|...+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|. +.
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~------------- 234 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LA------------- 234 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-EC-------------
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-ee-------------
Confidence 4444 666666666665555665555555 6777776665544556666667777777776642 21
Q ss_pred EEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1305 LSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1305 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
...+ .+..+++|++|++++|.....+|..+..+++|+.|++++|+.-..+|.. ..+++|+.+++++|+
T Consensus 235 ----------~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 235 ----------FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ----------eecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 1111 1456788899999988777788888888999999999997544577754 788999999999998
Q ss_pred CCCCCCC
Q 040015 1385 NLQTVPE 1391 (1399)
Q Consensus 1385 ~l~~lp~ 1391 (1399)
.+...|-
T Consensus 303 ~lc~~p~ 309 (313)
T 1ogq_A 303 CLCGSPL 309 (313)
T ss_dssp EEESTTS
T ss_pred CccCCCC
Confidence 7776553
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=3.2e-17 Score=188.20 Aligned_cols=206 Identities=24% Similarity=0.437 Sum_probs=121.7
Q ss_pred CCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCcc
Q 040015 1038 HRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLK 1117 (1399)
Q Consensus 1038 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 1117 (1399)
.+.++.|++++|. +..++.. +..+++|+.|++++|... .++.. +..+++|++|++++|... .+|..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~--~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFPDQ-AFRLSHLQHMTIDAAGLM-ELPDT--MQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC-CSSCCSC-GGGGTTCSEEEEESSCCC-CCCSC--GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCC-chhcChh-hhhCCCCCEEECCCCCcc-chhHH--HhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 3556666666665 4455554 455788888888887643 55543 347888888888888744 7788888888888
Q ss_pred EEEEecCCCCcccCCCCC----------CCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcc
Q 040015 1118 VLRISNCPSLVAFPEMGL----------PSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRD 1187 (1399)
Q Consensus 1118 ~L~ls~c~~l~~~~~~~~----------~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1187 (1399)
+|++++|+.++.+|.... +++|+.|++++| .++.+|..+ ..++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l-------~~l~------------------- 206 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASI-------ANLQ------------------- 206 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGG-------GGCT-------------------
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhh-------cCCC-------------------
Confidence 888888887777764221 344555555543 222333322 1233
Q ss_pred cccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCc
Q 040015 1188 KLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLK 1267 (1399)
Q Consensus 1188 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 1267 (1399)
+|++|++++| .+..+|.. +..+++|++|++++|...+.+|..+..+++|+.|++++|+.+.
T Consensus 207 ----~L~~L~L~~N-~l~~l~~~--------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 207 ----NLKSLKIRNS-PLSALGPA--------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp ----TCCEEEEESS-CCCCCCGG--------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred ----CCCEEEccCC-CCCcCchh--------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 4555555553 23334332 3445555555555555555555555555555555555555555
Q ss_pred cCccccccCCCcceEeecCCCCCccCCC
Q 040015 1268 FLPNGMYILTSLQEFSIHGCSSLMSFPE 1295 (1399)
Q Consensus 1268 ~lp~~~~~l~~L~~L~l~~c~~l~~l~~ 1295 (1399)
.+|..+.++++|+.|++++|+.++.+|.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 5555555555555555555555555554
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=4.7e-19 Score=223.84 Aligned_cols=378 Identities=14% Similarity=0.064 Sum_probs=207.1
Q ss_pred CCCCccEEEEcCCCCccCCC-------------------CCCcceeEeeccCCCcc--ccccC-CCCCcceeeecccCCc
Q 040015 995 FLPSLKTLEIDGCQKLAALP-------------------KLPSILELELNNCDGKV--LHSTG-GHRSLTYMRICQISKL 1052 (1399)
Q Consensus 995 ~l~~L~~L~i~~c~~l~~l~-------------------~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~ 1052 (1399)
.+++|++|++++|+.+..+. .+++|++|++++|.... ...+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 36789999999998664332 35567777776664322 11222 3567777777766444
Q ss_pred ccc-cccccccCCccceeeeccchhhhhhhhh--hcccccccccEEEeecCC-Cc--ccchhhhhCCCCccEEEEecCCC
Q 040015 1053 DCL-VEGYFQHFTALEELQISHLAELMTLSNK--IGLRSLLSLQRLEISECP-YF--KELPEKFYELSTLKVLRISNCPS 1126 (1399)
Q Consensus 1053 ~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~l~~L~~L~L~~~~-~~--~~l~~~~~~l~~L~~L~ls~c~~ 1126 (1399)
+.. ....+.++++|++|++++|......... .....+++|++|++++|. .+ ..++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 332 2223345677777777766521111110 112245677777777665 11 11222234457777777777655
Q ss_pred CcccCC-CCCCCCcceEEEcCCCc------cccchhhhccccccCcccCCcceE-EecCCCCCCccCcc-cccCCCCeEe
Q 040015 1127 LVAFPE-MGLPSTLVGLEIRSCEA------LQFLPEKMMHESQKNKDAFLLEYL-VIEGCPALVSLPRD-KLSGTLKVLE 1197 (1399)
Q Consensus 1127 l~~~~~-~~~~~~L~~L~l~~c~~------l~~l~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~l~~~-~~~~~L~~L~ 1197 (1399)
++.++. ....++|+.|.+..|.. +..++..+ .++++|+.+ .+.+.. ...++.. ...++|++|+
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l-------~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL-------SGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLN 295 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH-------HTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH-------hcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEE
Confidence 544332 22335666666655432 11111111 134445544 121110 0111111 0124788888
Q ss_pred eecCCCCCccC--c-cccccccccceeccc---------cCCCCCCceEeecCC--------CCCccc--CCCCCCCCCc
Q 040015 1198 IENCGNLQSLP--E-QMICSSLENLKVAGC---------LHNLAFLDHLEIDDC--------PLLQSF--PEPCLPTSML 1255 (1399)
Q Consensus 1198 l~~c~~l~~l~--~-~~~~~~L~~L~l~~~---------~~~l~~L~~L~l~~~--------~~~~~~--~~~~~~~~~L 1255 (1399)
+++|. +.... . ...+++|++|++++| ..++++|++|++.+| ..+... ......+++|
T Consensus 296 L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 296 LSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp CTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred ccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 88877 44321 1 124678888888877 235788888888543 222110 1111236788
Q ss_pred cceecccccCCcc-Ccccc-ccCCCcceEeec-----CCCCCccCCCC-------CCCCCcceEEeccCCCCCCCccccc
Q 040015 1256 RYARISNCQNLKF-LPNGM-YILTSLQEFSIH-----GCSSLMSFPEG-------GLPPNLISLSILDCENLKPSSEWGL 1321 (1399)
Q Consensus 1256 ~~L~l~~c~~l~~-lp~~~-~~l~~L~~L~l~-----~c~~l~~l~~~-------~~~~~L~~L~l~~c~~l~~~~~~~l 1321 (1399)
+.|.+++ +.+.. .+..+ ..+++|+.|+++ +|+.++..|.. ...++|+.|++.+ ++++.....+
T Consensus 375 ~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l 451 (594)
T 2p1m_B 375 ESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI 451 (594)
T ss_dssp CEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH
T ss_pred HHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH
Confidence 8886544 44432 22223 257888999888 67777755532 1246888888855 5554333344
Q ss_pred cc-CCCccEEEEcCCCCccccCCCC-CCCCCcceEEcCCCCCCCccc--cccCCCCCcCceeccCCCC
Q 040015 1322 HR-LTCLADFSFGGCQGLVSFPKGW-FLPKNLSSLYLERLPNLKSLP--NGLKNLKYLETLEIWECDN 1385 (1399)
Q Consensus 1322 ~~-l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~ 1385 (1399)
.. +++|++|++++|......+..+ ..+++|+.|++++|+. .... .....+++|++|++++|+.
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 43 7888899998877433222222 3467888999988775 3322 3455688889999988864
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.1e-16 Score=192.68 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=130.7
Q ss_pred ccCCcceEEecCCCCCCccCccccc--CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLS--GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQ 1243 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~ 1243 (1399)
.+++|++|+++++ .+..++...+. ++|++|++++| .++.++... |.++++|++|++++|....
T Consensus 86 ~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 86 HLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA-------------FVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp SCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT-------------SCSCSSCCEEECCSCCCCE
T ss_pred CCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhH-------------hhccccCceeeCCCCcccc
Confidence 3444555555542 33333322221 36666666663 455555433 4667777777777776554
Q ss_pred ccCCCCCCCCCccceecccccCCccCcc-ccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccc
Q 040015 1244 SFPEPCLPTSMLRYARISNCQNLKFLPN-GMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLH 1322 (1399)
Q Consensus 1244 ~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 1322 (1399)
..+..+..+++|++|++++|+.+..++. .+.++++|+.|++++| .++.+|.....++|+.|++++| .++.+.+..|.
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 228 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQ 228 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhhhc
Confidence 4445666677777777777776666654 4566777777777774 6666765555667777777764 56666666777
Q ss_pred cCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCceeccCCC
Q 040015 1323 RLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1323 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 1384 (1399)
.+++|++|++++|......+..+..+++|+.|+|++| .++.+| ..+..+++|++|++++||
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7788888888877665555666777788888888884 577776 456677888888887776
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=8.1e-18 Score=192.72 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=171.2
Q ss_pred cceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEc
Q 040015 1066 LEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIR 1145 (1399)
Q Consensus 1066 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~ 1145 (1399)
++.++++.+........ .+..+++|++|++++|......|..+..+++|++|++++|. ++..+.+..+++|+.|+++
T Consensus 12 l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECc
Confidence 44455555543222222 13356788888888888666666778888888888888864 3333334445566666666
Q ss_pred CCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceecccc
Q 040015 1146 SCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCL 1225 (1399)
Q Consensus 1146 ~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~ 1225 (1399)
+|. ++.++ ..+ +|++|++++| .+..++.
T Consensus 89 ~n~-l~~l~-----------~~~-----------------------~L~~L~l~~n-~l~~~~~---------------- 116 (317)
T 3o53_A 89 NNY-VQELL-----------VGP-----------------------SIETLHAANN-NISRVSC---------------- 116 (317)
T ss_dssp SSE-EEEEE-----------ECT-----------------------TCCEEECCSS-CCSEEEE----------------
T ss_pred CCc-ccccc-----------CCC-----------------------CcCEEECCCC-ccCCcCc----------------
Confidence 642 22221 012 5555555553 2333321
Q ss_pred CCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCcccc-ccCCCcceEeecCCCCCccCCCCCCCCCcce
Q 040015 1226 HNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGM-YILTSLQEFSIHGCSSLMSFPEGGLPPNLIS 1304 (1399)
Q Consensus 1226 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 1304 (1399)
..+++|++|++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++| .++.++....+++|+.
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~ 195 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKT 195 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCE
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCE
Confidence 234566666776666555445556666777777777765433334444 35777777877775 5666665556777888
Q ss_pred EEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCC-CccccccCCCCCcCceeccCC
Q 040015 1305 LSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNL-KSLPNGLKNLKYLETLEIWEC 1383 (1399)
Q Consensus 1305 L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c 1383 (1399)
|++++| .++.+++. +..+++|++|++++|. +..+|..+..+++|+.|++++|+.. ..+|.++..++.|+.|++++|
T Consensus 196 L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 196 LDLSSN-KLAFMGPE-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECCSS-CCCEECGG-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EECCCC-cCCcchhh-hcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 888764 45555444 7789999999999964 5578888889999999999997644 467788889999999999976
Q ss_pred CCCCCC
Q 040015 1384 DNLQTV 1389 (1399)
Q Consensus 1384 ~~l~~l 1389 (1399)
+.++..
T Consensus 273 ~~l~~~ 278 (317)
T 3o53_A 273 KKLTGQ 278 (317)
T ss_dssp HHHHSS
T ss_pred hhccCC
Confidence 655544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2e-16 Score=191.35 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=151.1
Q ss_pred ccCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQ 1243 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~ 1243 (1399)
.+++|++|+++++ .+..++...+ .++|++|++++| .++.++... |.++++|++|++++|....
T Consensus 97 ~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 97 HLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGA-------------FEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTT-------------SSSCTTCCEEECCSCCCCE
T ss_pred CCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhh-------------hcccCCCCEEECCCCCcce
Confidence 4555666666653 4444443222 237788888774 466665543 5778888888888888655
Q ss_pred ccCCCCCCCCCccceecccccCCccCcc-ccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccc
Q 040015 1244 SFPEPCLPTSMLRYARISNCQNLKFLPN-GMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLH 1322 (1399)
Q Consensus 1244 ~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 1322 (1399)
..+..+..+++|+.|++++|+.+..++. .+..+++|++|++++| .++.+|.....++|+.|++++ +.++.+.+..|.
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~ 239 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSG-NHFPEIRPGSFH 239 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTT-SCCSEECGGGGT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcC-CcCcccCccccc
Confidence 4455677888888888888888887765 4678888999999885 677777666678889999887 457777777888
Q ss_pred cCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCceeccCCC
Q 040015 1323 RLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1323 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 1384 (1399)
++++|++|++++|......|..+..+++|+.|+|++| .++.+| ..+..+++|++|++++||
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9999999999998776666777888899999999995 688887 567788999999999886
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=2.4e-19 Score=226.47 Aligned_cols=131 Identities=11% Similarity=-0.029 Sum_probs=62.6
Q ss_pred CCCCceEeecCCCCCcccCCCCC-CCCCccceecc-----cccCCccCcc------ccccCCCcceEeecCCCCCccCCC
Q 040015 1228 LAFLDHLEIDDCPLLQSFPEPCL-PTSMLRYARIS-----NCQNLKFLPN------GMYILTSLQEFSIHGCSSLMSFPE 1295 (1399)
Q Consensus 1228 l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~-----~c~~l~~lp~------~~~~l~~L~~L~l~~c~~l~~l~~ 1295 (1399)
+++|++|.+..|.........+. .+++|+.|+++ +|+.++..|. .+..+++|+.|++++ .++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH
Confidence 45566665444433222211111 34556666666 4445543321 134566666666644 2221110
Q ss_pred C---CCCCCcceEEeccCCCCCCCccccc-ccCCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCC
Q 040015 1296 G---GLPPNLISLSILDCENLKPSSEWGL-HRLTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPN 1361 (1399)
Q Consensus 1296 ~---~~~~~L~~L~l~~c~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~ 1361 (1399)
. ...++|+.|++++|. +++.....+ ..+++|++|+|++|....... .....+++|+.|++++|+.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 0 014566666666554 332222222 456777777777766532221 1223456777777777654
No 61
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=3.4e-19 Score=217.22 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCCCcceeeecccCCccc---ccccccccCCccceeeeccchhhhhhhhhhcccccc----cccEEEeecCCCcc----c
Q 040015 1037 GHRSLTYMRICQISKLDC---LVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLL----SLQRLEISECPYFK----E 1105 (1399)
Q Consensus 1037 ~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~L~~~~~~~----~ 1105 (1399)
.+++|++|++++|..... .....+..+++|++|++++|......... ....++ +|++|++++|.... .
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC-VLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-HHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-HHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 344555555555542211 11123445566666666665432211111 111222 46666666665432 3
Q ss_pred chhhhhCCCCccEEEEecCC
Q 040015 1106 LPEKFYELSTLKVLRISNCP 1125 (1399)
Q Consensus 1106 l~~~~~~l~~L~~L~ls~c~ 1125 (1399)
++..+..+++|++|++++|.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHccCCceeEEECCCCc
Confidence 35555666666666666654
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=3.4e-19 Score=217.25 Aligned_cols=335 Identities=18% Similarity=0.145 Sum_probs=227.2
Q ss_pred CCcceeeecccCCcccccccccccCCccceeeeccchhhhh----hhhhhcccccccccEEEeecCCCcccchh-hhhCC
Q 040015 1039 RSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMT----LSNKIGLRSLLSLQRLEISECPYFKELPE-KFYEL 1113 (1399)
Q Consensus 1039 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~~l 1113 (1399)
++|++|+++++..........+..+++|+.|++++|..... ++. .+..+++|++|++++|......+. ....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 56778888777744444444578899999999999974322 222 244789999999999986543333 33445
Q ss_pred C----CccEEEEecCCCCcc-----cC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCc
Q 040015 1114 S----TLKVLRISNCPSLVA-----FP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVS 1183 (1399)
Q Consensus 1114 ~----~L~~L~ls~c~~l~~-----~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 1183 (1399)
+ +|++|++++|. ++. ++ .....++|+.|++++|..-...+..+... .....++|++|++++| .+..
T Consensus 81 ~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--l~~~~~~L~~L~L~~n-~l~~ 156 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG--LLDPQCRLEKLQLEYC-SLSA 156 (461)
T ss_dssp CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH--HTSTTCCCCEEECTTS-CCBG
T ss_pred hhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH--HhcCCCcceEEECCCC-CCCH
Confidence 5 79999999986 442 22 34556899999999986322222211110 0113557999999997 4443
Q ss_pred cCccc------ccCCCCeEeeecCCCCCccCcccc-------ccccccceeccc-------------cCCCCCCceEeec
Q 040015 1184 LPRDK------LSGTLKVLEIENCGNLQSLPEQMI-------CSSLENLKVAGC-------------LHNLAFLDHLEID 1237 (1399)
Q Consensus 1184 l~~~~------~~~~L~~L~l~~c~~l~~l~~~~~-------~~~L~~L~l~~~-------------~~~l~~L~~L~l~ 1237 (1399)
..... ..++|++|++++|. +........ .++|++|++++| +..+++|++|+++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 22111 12499999999976 543321111 348999999988 3457999999999
Q ss_pred CCCCCccc-----CCCCCCCCCccceecccccCCcc-----CccccccCCCcceEeecCCCCCccCCCC-------CCCC
Q 040015 1238 DCPLLQSF-----PEPCLPTSMLRYARISNCQNLKF-----LPNGMYILTSLQEFSIHGCSSLMSFPEG-------GLPP 1300 (1399)
Q Consensus 1238 ~~~~~~~~-----~~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~~ 1300 (1399)
+|...... +..+..+++|++|++++|. ++. ++..+..+++|++|++++| .+...... ...+
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCc
Confidence 99754321 2223357899999999985 444 6777778999999999997 44321110 1236
Q ss_pred CcceEEeccCCCCCCCc----ccccccCCCccEEEEcCCCCccccCCCC----C-CCCCcceEEcCCCCCCC-----ccc
Q 040015 1301 NLISLSILDCENLKPSS----EWGLHRLTCLADFSFGGCQGLVSFPKGW----F-LPKNLSSLYLERLPNLK-----SLP 1366 (1399)
Q Consensus 1301 ~L~~L~l~~c~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~-~l~~L~~L~l~~~~~l~-----~l~ 1366 (1399)
+|+.|++.+|. ++... ...+..+++|++|++++|......+..+ . ..++|+.|++++| .+. .+|
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence 99999999875 44332 2345678999999999985433322211 1 2679999999997 466 678
Q ss_pred cccCCCCCcCceeccCCC
Q 040015 1367 NGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1367 ~~~~~l~~L~~L~l~~c~ 1384 (1399)
..+..+++|++|++++|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHHhCCCccEEECCCCC
Confidence 888889999999999985
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=2e-17 Score=188.78 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=119.0
Q ss_pred CcceeEeeccCCCc----cccccCCCCCcceeeecc-cCCcccccccccccCCccceeeeccchhhhhhhhhhccccccc
Q 040015 1017 PSILELELNNCDGK----VLHSTGGHRSLTYMRICQ-ISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLS 1091 (1399)
Q Consensus 1017 ~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 1091 (1399)
.+++.|++.++... .+..+..+++|++|++++ |.....++ ..+.++++|++|++++|.....++.. +..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGG--GGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHH--HhCCCC
Confidence 45667777666543 344556666666666664 33222333 33566666666666666543344433 235666
Q ss_pred ccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC-CCCCC-CcceEEEcCCCccccchhhhccccccCcccCC
Q 040015 1092 LQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE-MGLPS-TLVGLEIRSCEALQFLPEKMMHESQKNKDAFL 1169 (1399)
Q Consensus 1092 L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~-~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~ 1169 (1399)
|++|++++|.....+|..+..+++|++|++++|.....+|. +...+ +|+.|++++|.....+|..+.. +
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------l-- 197 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------L-- 197 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------C--
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------C--
Confidence 66666666665545666666666666666666543323332 22222 5555555554333333332211 1
Q ss_pred cceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCC
Q 040015 1170 LEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPC 1249 (1399)
Q Consensus 1170 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 1249 (1399)
+|+.|++++|. +...+... +..+++|++|++++|.....++. +
T Consensus 198 ----------------------~L~~L~Ls~N~-l~~~~~~~-------------~~~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 198 ----------------------NLAFVDLSRNM-LEGDASVL-------------FGSDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp ----------------------CCSEEECCSSE-EEECCGGG-------------CCTTSCCSEEECCSSEECCBGGG-C
T ss_pred ----------------------cccEEECcCCc-ccCcCCHH-------------HhcCCCCCEEECCCCceeeecCc-c
Confidence 25555555532 22221111 45566666666666654444433 4
Q ss_pred CCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCC
Q 040015 1250 LPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPE 1295 (1399)
Q Consensus 1250 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~ 1295 (1399)
..+++|++|++++|.....+|..+..+++|+.|++++|..-..+|.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 4556666666666554445666666666666666666532224443
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=186.99 Aligned_cols=245 Identities=17% Similarity=0.210 Sum_probs=145.7
Q ss_pred ccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCccc
Q 040015 1090 LSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDA 1167 (1399)
Q Consensus 1090 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 1167 (1399)
++|++|++++|......+..+..+++|++|++++| .++.++. +...++|+.|++++| .++.++...+. .+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~------~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFK------PL 123 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHT------TC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhC------CC
Confidence 45666666666533322335566666666666654 3333321 334456666666654 33344443222 46
Q ss_pred CCcceEEecCCCCCCccCc-ccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcc
Q 040015 1168 FLLEYLVIEGCPALVSLPR-DKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQS 1244 (1399)
Q Consensus 1168 ~~L~~L~l~~c~~l~~l~~-~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~ 1244 (1399)
++|++|+++++ .++.++. ..+ .++|++|++++|+.++.++... +.++++|++|++++|.....
T Consensus 124 ~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-------------FAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-------------TTTCCEEEEEEEEETTCCEE
T ss_pred ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHH-------------ccCCCCCCEEECCCCCcCcc
Confidence 66777777774 5555554 222 2488888888877677665433 67888999999999987777
Q ss_pred cCCCCCCCCCccceecccccCCccCcccc-ccCCCcceEeecCCCCCccCCCCC-----CCCCcceEEeccCCCCCCC--
Q 040015 1245 FPEPCLPTSMLRYARISNCQNLKFLPNGM-YILTSLQEFSIHGCSSLMSFPEGG-----LPPNLISLSILDCENLKPS-- 1316 (1399)
Q Consensus 1245 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~l~~c~~l~~~-- 1316 (1399)
.|..+..+++|++|++++|. +..+|..+ ..+++|+.|++++| .++.++... ....++.+++.++ .+...
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l 266 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESL 266 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHH
T ss_pred CHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcch
Confidence 78888889999999999876 46666543 35899999999885 555554322 2344555555443 12210
Q ss_pred --cccccccCCCccEEEEcCCCCccccCCC-CCCCCCcceEEcCCCC
Q 040015 1317 --SEWGLHRLTCLADFSFGGCQGLVSFPKG-WFLPKNLSSLYLERLP 1360 (1399)
Q Consensus 1317 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 1360 (1399)
.+..+..+++|++|++++|. +..+|.. +..+++|++|++++|+
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 11234455666666666543 3345544 3555666666666644
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=7.9e-16 Score=185.30 Aligned_cols=224 Identities=20% Similarity=0.245 Sum_probs=135.3
Q ss_pred CCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccE
Q 040015 1039 RSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKV 1118 (1399)
Q Consensus 1039 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 1118 (1399)
++++.|++++|. +..++...|.++++|+.|++++|... .++. ..+..+++|++|+|++|......+..+..+++|++
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIR-TIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCC-EECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCC-ccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 445555555554 44444445566666666666666432 2221 12335666666666666543333345666666666
Q ss_pred EEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeE
Q 040015 1119 LRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVL 1196 (1399)
Q Consensus 1119 L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 1196 (1399)
|++++|. ++.++. +...++|+.|++++|+.++.++...+. .+++|++|++++| .++.+|.....++|+.|
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------GLSNLRYLNLAMC-NLREIPNLTPLIKLDEL 212 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------TCSSCCEEECTTS-CCSSCCCCTTCSSCCEE
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh------cccccCeecCCCC-cCccccccCCCcccCEE
Confidence 6666643 444442 333466666666666666655554332 4666777777764 55555543334478888
Q ss_pred eeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc-ccccc
Q 040015 1197 EIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP-NGMYI 1275 (1399)
Q Consensus 1197 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~ 1275 (1399)
++++| .++.++... |.++++|++|++++|......+..+..+++|+.|+|++|. ++.+| ..+..
T Consensus 213 ~Ls~N-~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 277 (440)
T 3zyj_A 213 DLSGN-HLSAIRPGS-------------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTP 277 (440)
T ss_dssp ECTTS-CCCEECTTT-------------TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSS
T ss_pred ECCCC-ccCccChhh-------------hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhcc
Confidence 88775 455553332 6778888888888887766667777778888888888865 44444 44567
Q ss_pred CCCcceEeecCCC
Q 040015 1276 LTSLQEFSIHGCS 1288 (1399)
Q Consensus 1276 l~~L~~L~l~~c~ 1288 (1399)
+++|+.|++++++
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 8888888888765
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=4.6e-16 Score=188.11 Aligned_cols=223 Identities=20% Similarity=0.269 Sum_probs=134.2
Q ss_pred CcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEE
Q 040015 1040 SLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVL 1119 (1399)
Q Consensus 1040 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 1119 (1399)
++++|++++|. +..+....|.++++|+.|++++|......+. .+..+++|++|+|++|......+..+..+++|++|
T Consensus 76 ~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 76 NTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChh--hccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 44555555444 3344444455666666666666543222111 23356666666666666433333445566666666
Q ss_pred EEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEe
Q 040015 1120 RISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLE 1197 (1399)
Q Consensus 1120 ~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1197 (1399)
++++|. ++.++. +...++|+.|++++|+.++.++...+. .+++|++|++++| .+..++.....++|+.|+
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------GLFNLKYLNLGMC-NIKDMPNLTPLVGLEELE 224 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------TCTTCCEEECTTS-CCSSCCCCTTCTTCCEEE
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhcc------CCCCCCEEECCCC-cccccccccccccccEEE
Confidence 666643 444442 333456666666666666655544332 4666777777663 455555433345788888
Q ss_pred eecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc-cccccC
Q 040015 1198 IENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP-NGMYIL 1276 (1399)
Q Consensus 1198 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l 1276 (1399)
+++| .+..++... |.++++|++|++++|......+..+..+++|+.|+|++|. ++.+| ..+..+
T Consensus 225 Ls~N-~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 289 (452)
T 3zyi_A 225 MSGN-HFPEIRPGS-------------FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPL 289 (452)
T ss_dssp CTTS-CCSEECGGG-------------GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTC
T ss_pred CcCC-cCcccCccc-------------ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccc
Confidence 8874 455553332 6788888888888888777677778888888888888875 44554 445678
Q ss_pred CCcceEeecCCC
Q 040015 1277 TSLQEFSIHGCS 1288 (1399)
Q Consensus 1277 ~~L~~L~l~~c~ 1288 (1399)
++|+.|++++|+
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 888888888865
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-16 Score=193.48 Aligned_cols=237 Identities=14% Similarity=0.064 Sum_probs=157.9
Q ss_pred ccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCccccchhhhccccccCccc
Q 040015 1088 SLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDA 1167 (1399)
Q Consensus 1088 ~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 1167 (1399)
.+++|++|+|++|......|..+..+++|++|++++|. ++..+.+..+++|+.|++++|. ++.++. .
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-----------~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV-----------G 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE-----------C
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC-----------C
Confidence 45678888888887666666778888888888888865 3333334555666666666652 222221 1
Q ss_pred CCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCC
Q 040015 1168 FLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPE 1247 (1399)
Q Consensus 1168 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~ 1247 (1399)
++|+.|++++| .+..++. ..+++|++|++++|......|.
T Consensus 99 -----------------------~~L~~L~L~~N-~l~~~~~----------------~~l~~L~~L~L~~N~l~~~~~~ 138 (487)
T 3oja_A 99 -----------------------PSIETLHAANN-NISRVSC----------------SRGQGKKNIYLANNKITMLRDL 138 (487)
T ss_dssp -----------------------TTCCEEECCSS-CCCCEEE----------------CCCSSCEEEECCSSCCCSGGGB
T ss_pred -----------------------CCcCEEECcCC-cCCCCCc----------------cccCCCCEEECCCCCCCCCCch
Confidence 25555555553 2333322 2345666666666665555555
Q ss_pred CCCCCCCccceecccccCCccCccccc-cCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1248 PCLPTSMLRYARISNCQNLKFLPNGMY-ILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1248 ~~~~~~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
.+..+++|+.|++++|......|..+. .+++|+.|++++| .++.+|....+++|+.|++++| .++.+++. +..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~ 215 (487)
T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAG 215 (487)
T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECGG-GGGGTT
T ss_pred hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCC-CCCCCCHh-HcCCCC
Confidence 666667777777777654444555554 5777777777774 4666665555677777777763 45555544 778999
Q ss_pred ccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCC-CccccccCCCCCcCceecc
Q 040015 1327 LADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNL-KSLPNGLKNLKYLETLEIW 1381 (1399)
Q Consensus 1327 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~ 1381 (1399)
|+.|++++|. +..+|..+..+++|+.|++++|+.. ..+|.++..++.|+.++++
T Consensus 216 L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 216 VTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999965 4568888889999999999997644 3677888899999999886
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=179.99 Aligned_cols=110 Identities=24% Similarity=0.323 Sum_probs=83.5
Q ss_pred ccccccccCCCCcccEEEecCCCCcccCc-ccCCCCCCcEEeccCCcccccc-ccccCCCCCcEEEccCCCCCCCcChh-
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALPD-SVGDLKHLRYLDLSRTAIKQLP-DSTGNLCNLQSIILLECYSLSKLPTD- 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls~n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~lP~~- 652 (1399)
..+|..++ ++|++|+|++|.++.+|. .|.++++|++|+|++|.+..++ ..|+++++|++|++++| .+..+|..
T Consensus 44 ~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 119 (353)
T 2z80_A 44 NSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSW 119 (353)
T ss_dssp SSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHH
T ss_pred cccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhH
Confidence 45665543 478888888888887754 7888888888888888888764 46888888888888888 56667665
Q ss_pred hccCCCCCEEEccCCcccccCc--cccCCCCCCccCcee
Q 040015 653 LGNLTGLRHLRMSGSRLREMPM--KMYKLKNLQTLSHFV 689 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~ 689 (1399)
|+++++|++|++++|.++.+|. .++.+++|++|+...
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 7888888888888888888876 467777777776543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=4.1e-17 Score=186.84 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=150.3
Q ss_pred ccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC
Q 040015 1053 DCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE 1132 (1399)
Q Consensus 1053 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~ 1132 (1399)
...+...+..+++|++|++++|......+.. +..+++|++|++++|......+ +..+++|++|++++|. ++.++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAAD--LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHH--HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE-
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHH--hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc-
Confidence 3344445566677777777777543322222 3467777777777777543333 6777777777777753 44444
Q ss_pred CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCcc
Q 040015 1133 MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQ 1210 (1399)
Q Consensus 1133 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~ 1210 (1399)
..++|+.|++++|.. +.++.. .+++|++|+++++ .+..++...+ .++|+.|++++| .+..++..
T Consensus 97 --~~~~L~~L~l~~n~l-~~~~~~---------~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 162 (317)
T 3o53_A 97 --VGPSIETLHAANNNI-SRVSCS---------RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFA 162 (317)
T ss_dssp --ECTTCCEEECCSSCC-SEEEEC---------CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGG
T ss_pred --CCCCcCEEECCCCcc-CCcCcc---------ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCC-CCCcccHH
Confidence 226777777777543 323221 2455777777663 4444433222 236777777764 34443222
Q ss_pred ccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCC
Q 040015 1211 MICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSL 1290 (1399)
Q Consensus 1211 ~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 1290 (1399)
.. +..+++|++|++++|.... ++.. ..+++|++|++++|. +..+|..+..+++|+.|++++| .+
T Consensus 163 ~~------------~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 163 EL------------AASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp GG------------GGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CC
T ss_pred HH------------hhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cc
Confidence 11 2456777888887777443 3322 236778888887754 4566666777788888888775 55
Q ss_pred ccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCc-cccCCCCCCCCCcceEEcCCCCCCCccc
Q 040015 1291 MSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGL-VSFPKGWFLPKNLSSLYLERLPNLKSLP 1366 (1399)
Q Consensus 1291 ~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 1366 (1399)
+.+|. .+..+++|+.|++++|... ..+|..+..+++|+.|++++|+.++..+
T Consensus 227 ~~l~~------------------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 227 VLIEK------------------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CEECT------------------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cchhh------------------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 55543 2445667777777776655 4555556666777777777665555443
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=2.1e-16 Score=180.38 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=45.1
Q ss_pred cccccccCCCCcccEEEecCCCCccc---CcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcC--h
Q 040015 577 RVPRDILPRLKCLRVLSFSACRITAL---PDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLP--T 651 (1399)
Q Consensus 577 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP--~ 651 (1399)
.+|..+|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|..+..+++|++|++++| .+..+| .
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 120 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS 120 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccch
Confidence 34444445555555555555554433 33444455555555555555555555555555555555554 333333 2
Q ss_pred hhccCCCCCEEEccCCccc
Q 040015 652 DLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 652 ~i~~L~~L~~L~l~~~~l~ 670 (1399)
.+..+++|++|++++|.+.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp TTTTCTTCCEEECTTSCCE
T ss_pred hhhhccCCCEEECCCCcCC
Confidence 3445555555555555444
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=1.4e-15 Score=173.47 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=177.1
Q ss_pred cEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccc---hhhhccccccCccc
Q 040015 1093 QRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFL---PEKMMHESQKNKDA 1167 (1399)
Q Consensus 1093 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l---~~~~~~~~~~~~~~ 1167 (1399)
+.++.+++. ++.+|..+ .++|++|++++|. ++.++. +...++|+.|++++|. ++.+ +.... .+
T Consensus 10 ~~l~c~~~~-l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-------~~ 77 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF-------GT 77 (306)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH-------SC
T ss_pred CEEEcCCCC-cccCCCCC--CCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccc-------cc
Confidence 467777666 66777643 4689999999864 666765 4556899999999874 3322 22221 46
Q ss_pred CCcceEEecCCCCCCccCcc-cccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccC
Q 040015 1168 FLLEYLVIEGCPALVSLPRD-KLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFP 1246 (1399)
Q Consensus 1168 ~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~ 1246 (1399)
++|++|+++++ .+..++.. .-.++|++|+++++ .++.++... .+.++++|++|++++|......+
T Consensus 78 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 78 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS------------VFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTT------------TTTTCTTCCEEECTTSCCEECST
T ss_pred cccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccch------------hhhhccCCCEEECCCCcCCccch
Confidence 78999999885 45555532 11248888888884 455554311 16788999999999998777777
Q ss_pred CCCCCCCCccceecccccCCc-cCccccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCccccccc
Q 040015 1247 EPCLPTSMLRYARISNCQNLK-FLPNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHR 1323 (1399)
Q Consensus 1247 ~~~~~~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~ 1323 (1399)
..+..+++|++|++++|.... .+|..+..+++|+.|++++| .++.++...+ .++|+.|++++| .++.+....+..
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 221 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKC 221 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccC
Confidence 888889999999999987554 47888889999999999986 6666654333 578999999874 566676667888
Q ss_pred CCCccEEEEcCCCCccccCCCCCCC-CCcceEEcCCCCCCCc
Q 040015 1324 LTCLADFSFGGCQGLVSFPKGWFLP-KNLSSLYLERLPNLKS 1364 (1399)
Q Consensus 1324 l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~ 1364 (1399)
+++|++|++++|......|..+..+ ++|+.|++++|+ +.+
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~-~~~ 262 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND-FAC 262 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC-EEC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC-eec
Confidence 8999999999987777777777666 489999999965 544
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=4.3e-15 Score=167.49 Aligned_cols=219 Identities=20% Similarity=0.269 Sum_probs=169.8
Q ss_pred ceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCccccccccc
Q 040015 1140 VGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLE 1217 (1399)
Q Consensus 1140 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1217 (1399)
..++.++ ..++.+|... .++|++|++++ +.++.++...+ .++|++|+++++ .++.++...
T Consensus 14 ~~~~c~~-~~l~~ip~~~---------~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~------ 75 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGI---------PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAA------ 75 (285)
T ss_dssp CEEECCS-SCCSSCCTTC---------CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTT------
T ss_pred eEEEcCc-CCcccCCcCC---------CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCC-ccceeCHhh------
Confidence 4455544 4566666432 34688888887 45666654333 247888888875 455553322
Q ss_pred cceeccccCCCCCCceEeecCCCCCccc-CCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCC
Q 040015 1218 NLKVAGCLHNLAFLDHLEIDDCPLLQSF-PEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEG 1296 (1399)
Q Consensus 1218 ~L~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~ 1296 (1399)
+.++++|++|++++|..+..+ +..+..+++|++|++++|......|..+..+++|++|++++| .++.++..
T Consensus 76 -------~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 147 (285)
T 1ozn_A 76 -------FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD 147 (285)
T ss_dssp -------TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred -------cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHh
Confidence 678999999999999855555 777888999999999998765555777889999999999995 67777765
Q ss_pred C--CCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCCC
Q 040015 1297 G--LPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLK 1373 (1399)
Q Consensus 1297 ~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~ 1373 (1399)
. ..++|+.|+++++ +++.+....+..+++|++|++++|......|..+..+++|+.|++++| .+..+| ..+..++
T Consensus 148 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLR 225 (285)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCT
T ss_pred HhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCc
Confidence 3 3689999999884 677777777899999999999998877777888999999999999995 688887 5689999
Q ss_pred CcCceeccCCCCC
Q 040015 1374 YLETLEIWECDNL 1386 (1399)
Q Consensus 1374 ~L~~L~l~~c~~l 1386 (1399)
+|++|++++|+-.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 9999999998754
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.1e-15 Score=165.00 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred cCCCCCCceEeecCCCCCcccC-CCCCCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccCCCCCCCCCc
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFP-EPCLPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSFPEGGLPPNL 1302 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 1302 (1399)
|.++++|++|++++|..++.++ ..+..+++|++|++++|+.++.+| ..+.++++|++|++++| .++.+|.-...++|
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCcccccccccccc
Confidence 3445555555555554233332 234445555555555534444443 23344555555555553 34444432223344
Q ss_pred c---eEEeccCCCCCCCcccccccCCCcc-EEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCC-CCcC
Q 040015 1303 I---SLSILDCENLKPSSEWGLHRLTCLA-DFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNL-KYLE 1376 (1399)
Q Consensus 1303 ~---~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l-~~L~ 1376 (1399)
+ .|++++++.++.+....|..+++|+ +|++++|.. ..+|......++|+.|++++|..++.+| ..+..+ ++|+
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 4 5555554344444444455555555 555555332 2444332222455555555543355554 334444 5555
Q ss_pred ceeccCCCCCCCCCCCC
Q 040015 1377 TLEIWECDNLQTVPEEK 1393 (1399)
Q Consensus 1377 ~L~l~~c~~l~~lp~~~ 1393 (1399)
+|++++| .++.+|...
T Consensus 209 ~L~l~~N-~l~~l~~~~ 224 (239)
T 2xwt_C 209 LLDVSQT-SVTALPSKG 224 (239)
T ss_dssp EEECTTC-CCCCCCCTT
T ss_pred EEECCCC-ccccCChhH
Confidence 5555554 344555443
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.63 E-value=5e-16 Score=175.16 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCCCCCCeEEEeecCCCCC-CcCcCCCCcCceeEEEEeCCCCCCCCC-CCCCCCCccceecccCc
Q 040015 823 LQPHENLKQLTINDYGGIKF-PGWIASPLFCNMTVLVLSNCRNCQFLP-SLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 823 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 886 (1399)
+..+++|+.|+++++..... |.++. .+++|+.|++++|......+ .+..+++|+.|++++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 34456677777777665544 33443 46778888888876544332 37778888888888876
No 75
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=2.1e-15 Score=180.47 Aligned_cols=314 Identities=11% Similarity=-0.004 Sum_probs=186.3
Q ss_pred CccccchhHHHHHHHHH-hccCCCCCCCCcEEEEE--EcCCCchHHHHHHHHhcCcccc---cccc-ceEEEEeCCccCH
Q 040015 172 SCVYGRENDKNAIVELL-MVEDDSSSSNNVSVVPI--VGMGGIGKTTVAQLVYNDSRVD---GRFD-LKVWVCVSDQFDV 244 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~vv~I--~G~gG~GKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 244 (1399)
..++||+++++++.+++ ...... .....+++.| +|++|+||||||+++++..... ..|. .++|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 57999999999999998 532100 0012456666 9999999999999999843211 0122 3578887777788
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhc--CcceEEEecCCcCCC------cchhhhhhcccCCC---C--CCc
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLA--GKKFLLVLDDVWSRR------NDDWDLICSPLKAG---A--RGS 311 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 311 (1399)
..++..++.+++........+...+...+.+.+. +++++||+||+|.-. .+.+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 8999999999876533222224556666666664 679999999997632 13333333333211 2 344
Q ss_pred EEEEEcCChhhHHhc--------C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHcc------Cc
Q 040015 312 KIIITTRDSSIAASM--------G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCE------GL 376 (1399)
Q Consensus 312 ~ilvTtR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~------g~ 376 (1399)
.||+||+...+...+ . ....+.+++++.++++++|...+...... .....+.++.|++.++ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 588888766543211 1 11239999999999999997654321111 1112456788999999 99
Q ss_pred hhHHHHHHHHHh-----cC---CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCC--CCcccc
Q 040015 377 LLAVKRMGIILR-----SR---EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFP--AGYEFD 446 (1399)
Q Consensus 377 PLai~~~~~~l~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~ 446 (1399)
|..+..+..... .. -+.+.+..++..... ...+.-++..||++.+.++..+|.+. .+..+.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 976655543221 11 123344444332110 22344567889999999999998764 233555
Q ss_pred hHHHHHHHH--H-hCCccccccchhHHHHHHHHHHHHHhccccccccC---CCceEEehHH
Q 040015 447 KEKLVLLWM--A-EGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSVH---NSSLYVMHGL 501 (1399)
Q Consensus 447 ~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~~mH~l 501 (1399)
...+...|. + +- ... ..........++++|++.+++..... ..+.|++|++
T Consensus 330 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 330 AGLLRQRYEDASLTM-YNV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp HHHHHHHHHHHHHHH-SCC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEE
T ss_pred HHHHHHHHHHHHHhh-cCC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEe
Confidence 555554442 2 10 100 00112446688999999999987532 2234545544
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=2.1e-14 Score=167.72 Aligned_cols=292 Identities=12% Similarity=0.112 Sum_probs=180.5
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc------C
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF------D 243 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 243 (1399)
....||||++++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3467999999999999998532 489999999999999999999742 1 6777765442 5
Q ss_pred HHHHHHHHHHHccC-----------------CCCCCCcchHHHHHHHHHHhcC-cceEEEecCCcCCCc-------chhh
Q 040015 244 VLRVTTTILKSVTS-----------------KPADVDDDLNLLQVCLREKLAG-KKFLLVLDDVWSRRN-------DDWD 298 (1399)
Q Consensus 244 ~~~~~~~i~~~l~~-----------------~~~~~~~~~~~l~~~l~~~l~~-~r~LlvlDdv~~~~~-------~~~~ 298 (1399)
...++..+...+.. ..........++...+.+.... ++++||+||++.-.. +.+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666665532 0000012355666666666543 389999999966321 1222
Q ss_pred hhhcccCCCCCCcEEEEEcCChhhHHhc-----------Cc-cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHH
Q 040015 299 LICSPLKAGARGSKIIITTRDSSIAASM-----------GT-VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIG 366 (1399)
Q Consensus 299 ~l~~~l~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~ 366 (1399)
.+..... ...+.++|+|++...+...+ +. ...+++.+|+.+|+.+++....-..+. . ...+.+
T Consensus 154 ~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~ 228 (350)
T 2qen_A 154 LFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEI 228 (350)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHH
T ss_pred HHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHH
Confidence 2322221 22477899998876542211 11 247899999999999999765321111 1 123567
Q ss_pred HHHHHHccCchhHHHHHHHHHhcCCChHHHHH-HHhhhccCCCCCcchHHHHHHHhhcCC---ChhhhhhhhhhccCCCC
Q 040015 367 AEIVNKCEGLLLAVKRMGIILRSREDKGEWYD-MLNRNIWDLPHDESSILQTLGLSYHHL---PPHLKQCFAYCSVFPAG 442 (1399)
Q Consensus 367 ~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~fp~~ 442 (1399)
.+|++.++|+|+++..++..+....+...+.. +.+ .+...+.-.+..+ ++..+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL---G 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh---C
Confidence 89999999999999999876543223222211 111 1111111122222 7889999999988 2
Q ss_pred cccchHHHHHHHHHhCCccccccchhHHHHHHHHHHHHHhccccccccCCCceEEe-hHHHHHHHH
Q 040015 443 YEFDKEKLVLLWMAEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSVHNSSLYVM-HGLMKDLAR 507 (1399)
Q Consensus 443 ~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~m-H~lv~~~a~ 507 (1399)
.++...+.....+. .- +. .......+++.|++.+++.... ..|.+ |++++++.+
T Consensus 295 -~~~~~~l~~~~~~~-~~-----~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 -YNRWSLIRDYLAVK-GT-----KI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp -CCSHHHHHHHHHHT-TC-----CC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred -CCCHHHHHHHHHHH-hC-----CC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 23445554433221 10 01 1244678999999999998752 34554 778887754
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=5.7e-15 Score=161.52 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=101.4
Q ss_pred cCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcc
Q 040015 1167 AFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQS 1244 (1399)
Q Consensus 1167 ~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~ 1244 (1399)
+++|++|+++++..++.++...+ .++|++|++++|+.++.++... |.++++|++|++++|... .
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-------------f~~l~~L~~L~l~~n~l~-~ 119 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-------------LKELPLLKFLGIFNTGLK-M 119 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS-------------EECCTTCCEEEEEEECCC-S
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH-------------hCCCCCCCEEeCCCCCCc-c
Confidence 44455555555433444443222 1256666666655555555332 456666666666666533 3
Q ss_pred cCCCCCCCCCcc---ceecccccCCccCcc-ccccCCCcc-eEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCccc
Q 040015 1245 FPEPCLPTSMLR---YARISNCQNLKFLPN-GMYILTSLQ-EFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEW 1319 (1399)
Q Consensus 1245 ~~~~~~~~~~L~---~L~l~~c~~l~~lp~-~~~~l~~L~-~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~ 1319 (1399)
+|. +..+++|+ +|++++|..++.+|. .+..+++|+ .|++++| .++.+|. .
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~-----------------------~ 174 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG-----------------------Y 174 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT-----------------------T
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH-----------------------h
Confidence 454 55555555 666666544555443 245566666 6666553 3444443 3
Q ss_pred ccccCCCccEEEEcCCCCccccC-CCCCCC-CCcceEEcCCCCCCCccccccCCCCCcCceeccCCCC
Q 040015 1320 GLHRLTCLADFSFGGCQGLVSFP-KGWFLP-KNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDN 1385 (1399)
Q Consensus 1320 ~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 1385 (1399)
.+.. ++|++|++++|..+..+| ..+..+ ++|+.|++++ +.++.+|.. .+++|+.|++++|+.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 3434 677777887775455554 456677 8888888888 467788754 677888888888764
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.5e-14 Score=162.53 Aligned_cols=123 Identities=23% Similarity=0.234 Sum_probs=91.7
Q ss_pred ccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccccc
Q 040015 551 FNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPDST 629 (1399)
Q Consensus 551 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~~i 629 (1399)
+.++++++++.+.++.. ..+|..++ +.+++|+|++|.++.+ |..|..+++|++|+|++|.|..+|..
T Consensus 6 ~~~l~~l~~l~~~~~~l--------~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL--------TALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp EECSTTCCEEECTTSCC--------SSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred ccccCCccEEECCCCCC--------CcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 34556677777765432 45666553 5788888888888877 67788888888888888888887764
Q ss_pred cCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcc-ccCCCCCCccC
Q 040015 630 GNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLS 686 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 686 (1399)
+.+++|++|++++| .+..+|..+..+++|++|++++|.++.+|.+ +..+++|++|+
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 78888888888888 6778888888888888888888888877643 56666666554
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=5.5e-14 Score=156.71 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=90.7
Q ss_pred cceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCC
Q 040015 1170 LEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPC 1249 (1399)
Q Consensus 1170 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 1249 (1399)
.+.+++++ ..++.+|.. ++++|++|+++++ .++.++... |.++++|++|++++|......+..+
T Consensus 18 ~~~l~~~~-~~l~~ip~~-~~~~l~~L~l~~n-~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSN-IPADTKKLDLQSN-KLSSLPSKA-------------FHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp TTEEECTT-SCCSSCCSC-CCTTCSEEECCSS-CCSCCCTTS-------------SSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCEEEccC-CCCCccCCC-CCCCCCEEECcCC-CCCeeCHHH-------------hcCCCCCCEEECCCCccCeeChhhh
Confidence 34444444 344444432 2235556665553 344443322 3445555555555554332222233
Q ss_pred CCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1250 LPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1250 ~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
..+++|++|++++|. +..+| ..+..+++|++|++++| .++.++... .+++|+.|+++++ .++.++...+..+++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS 158 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcc
Confidence 445555555555543 22332 23344555555555553 344444322 2345555555542 344444444555555
Q ss_pred ccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCceeccCCC
Q 040015 1327 LADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1327 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~ 1384 (1399)
|++|++++|......+..+..+++|+.|++++| .++.+| ..+..+++|++|++++||
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 555555554332222223445555555555553 355554 234455555555555554
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=3.9e-14 Score=164.50 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=135.8
Q ss_pred cEEEeecCCCcccchhhhhCCCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCc
Q 040015 1093 QRLEISECPYFKELPEKFYELSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLL 1170 (1399)
Q Consensus 1093 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L 1170 (1399)
++++-+++. ++.+|..+ .+++++|+|++| .++.+|. +..+++|+.|++++|..++.++...+. +++
T Consensus 12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~------~L~-- 79 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS------NLP-- 79 (350)
T ss_dssp TEEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC------SCT--
T ss_pred CEEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh------cch--
Confidence 345555554 55666544 356777777773 4566653 333456666666666555555443322 233
Q ss_pred ceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCC
Q 040015 1171 EYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCL 1250 (1399)
Q Consensus 1171 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 1250 (1399)
++.++.+.+++++..++... |.++++|++|++++|......+..+.
T Consensus 80 ---------------------~l~~~l~~~~N~l~~l~~~~-------------f~~l~~L~~L~l~~n~l~~~~~~~~~ 125 (350)
T 4ay9_X 80 ---------------------KLHEIRIEKANNLLYINPEA-------------FQNLPNLQYLLISNTGIKHLPDVHKI 125 (350)
T ss_dssp ---------------------TCCEEEEEEETTCCEECTTS-------------BCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred ---------------------hhhhhhcccCCcccccCchh-------------hhhccccccccccccccccCCchhhc
Confidence 34444444445555554333 45566666666666654333333444
Q ss_pred CCCCccceecccccCCccCccc-cccC-CCcceEeecCCCCCccCCCCCC-CCCcceEEeccCCCCCCCcccccccCCCc
Q 040015 1251 PTSMLRYARISNCQNLKFLPNG-MYIL-TSLQEFSIHGCSSLMSFPEGGL-PPNLISLSILDCENLKPSSEWGLHRLTCL 1327 (1399)
Q Consensus 1251 ~~~~L~~L~l~~c~~l~~lp~~-~~~l-~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~c~~l~~~~~~~l~~l~~L 1327 (1399)
...++..|++.+++.+..+|.. +..+ ..|+.|++++ +.++.++...+ ..+|+.|.+.+++.++.++...|..+++|
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L 204 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence 4455666666665555555432 2333 3466666666 35666655433 24566666666666666666667777777
Q ss_pred cEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccC
Q 040015 1328 ADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWE 1382 (1399)
Q Consensus 1328 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 1382 (1399)
++|++++| .+..+|. ..+.+|++|.+.+|+.++.+| .+..+++|+.+++.+
T Consensus 205 ~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 205 VILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp SEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred chhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 77777775 4556664 235567777777777777776 366677777777654
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=4.2e-14 Score=158.87 Aligned_cols=196 Identities=21% Similarity=0.186 Sum_probs=117.2
Q ss_pred ccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF 1245 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~ 1245 (1399)
.+++++++++.+ ..++.+|... +++++.|+++++. ++.++... |.++++|++|++++|.... +
T Consensus 8 ~l~~l~~l~~~~-~~l~~ip~~~-~~~l~~L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~-~ 70 (290)
T 1p9a_G 8 KVASHLEVNCDK-RNLTALPPDL-PKDTTILHLSENL-LYTFSLAT-------------LMPYTRLTQLNLDRAELTK-L 70 (290)
T ss_dssp CSTTCCEEECTT-SCCSSCCSCC-CTTCCEEECTTSC-CSEEEGGG-------------GTTCTTCCEEECTTSCCCE-E
T ss_pred ccCCccEEECCC-CCCCcCCCCC-CCCCCEEEcCCCc-CCccCHHH-------------hhcCCCCCEEECCCCccCc-c
Confidence 345566666665 4566666433 3477777777743 44443322 4566666666666665332 3
Q ss_pred CCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCccccccc
Q 040015 1246 PEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHR 1323 (1399)
Q Consensus 1246 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~ 1323 (1399)
+.. ..+++|++|++++|. ++.+|..+..+++|+.|++++| .++.+|...+ .++|+.|++++ +.++.++...|..
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTP 146 (290)
T ss_dssp ECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTT
T ss_pred cCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhccc
Confidence 322 456666777776643 4566666666667777777663 5555654322 35666666665 3455555556666
Q ss_pred CCCccEEEEcCCCCccccCC-CCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1324 LTCLADFSFGGCQGLVSFPK-GWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1324 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
+++|++|++++|. +..+|. .+..+++|+.|++++ +.++.+|..+..+.+|++|+++++|
T Consensus 147 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 7777777777654 334443 345667777777777 3566777666666677777777665
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=3.5e-15 Score=170.35 Aligned_cols=202 Identities=19% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCCcccEEEecCCCCc-ccCccc--CCCCCCcEEeccCCccccccccccCC-----CCCcEEEccCCCCCCCcChhhccC
Q 040015 585 RLKCLRVLSFSACRIT-ALPDSV--GDLKHLRYLDLSRTAIKQLPDSTGNL-----CNLQSIILLECYSLSKLPTDLGNL 656 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~-~lp~~i--~~L~~L~~L~Ls~n~i~~lP~~i~~L-----~~L~~L~L~~~~~~~~lP~~i~~L 656 (1399)
++++|++|+|++|.++ .+|..+ +.+++|++|+|++|.+..+|..++.+ ++|++|++++|......|..|+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4667777777777776 456655 67777777777777777666666666 677777777773333333567777
Q ss_pred CCCCEEEccCCcccc---cCccc--cCCCCCCccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhcC
Q 040015 657 TGLRHLRMSGSRLRE---MPMKM--YKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANLK 731 (1399)
Q Consensus 657 ~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~ 731 (1399)
++|++|++++|.+.. +|..+ +.+++|++|+...+ .+. .........+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N------~l~---------------------~~~~~~~~~~~ 225 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA------GME---------------------TPSGVCSALAA 225 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS------CCC---------------------CHHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC------cCc---------------------chHHHHHHHHh
Confidence 777777777776432 23333 55566655543111 111 11111122334
Q ss_pred CCCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCCC
Q 040015 732 DKKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGSG 811 (1399)
Q Consensus 732 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 811 (1399)
.+++|+.|++++|...+.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~-------------------------------------------------------------- 243 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDA-------------------------------------------------------------- 243 (312)
T ss_dssp TTCCCSEEECTTSCCCSS--------------------------------------------------------------
T ss_pred cCCCCCEEECCCCcCCcc--------------------------------------------------------------
Confidence 456677777766554110
Q ss_pred ChhhHHhhhhcCCCCCCCCeEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCCCCCCCCCCCccceecccCc
Q 040015 812 NERVEMDVLEMLQPHENLKQLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQFLPSLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 812 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 886 (1399)
.....+..+++|+.|++++|....+|.++. ++|++|++++|... .+|.+..+++|++|++++|+
T Consensus 244 ------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~-~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 ------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------CCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCC-SCCCTTTSCEEEEEECTTCT
T ss_pred ------cchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCC-CChhHhhCCCCCEEeccCCC
Confidence 001223345788888888888777777654 67888888888744 34667888888888888875
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1.2e-14 Score=165.20 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=37.6
Q ss_pred CCCCCCCeEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCCCCCCCCCCCccceecccCc
Q 040015 824 QPHENLKQLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQFLPSLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 824 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 886 (1399)
..+++|+.|+++++....++. + ..+++|+.|++++|.. ..++++..+++|+.|++++|+
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCcc-CccccccCCCCCCEEEccCCe
Confidence 345566666666666555554 1 2566777777777763 334456777777777777775
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.8e-15 Score=172.70 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcc--cCCCC--CCCCCccceecccccCCc
Q 040015 1192 TLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQS--FPEPC--LPTSMLRYARISNCQNLK 1267 (1399)
Q Consensus 1192 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~c~~l~ 1267 (1399)
+|++|++++| .+..++... +.++++|++|++++|...+. ++..+ ..+++|++|++++|. ++
T Consensus 150 ~L~~L~L~~N-~l~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~ 214 (312)
T 1wwl_A 150 GLKVLSIAQA-HSLNFSCEQ-------------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-ME 214 (312)
T ss_dssp TCCEEEEESC-SCCCCCTTT-------------CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CC
T ss_pred CCcEEEeeCC-CCccchHHH-------------hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-Cc
Confidence 6777777764 345554322 56788888888888876544 22222 567788888888765 34
Q ss_pred cC---ccc-cccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCC
Q 040015 1268 FL---PNG-MYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPK 1343 (1399)
Q Consensus 1268 ~l---p~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 1343 (1399)
.+ +.. +..+++|+.|++++| .++..+. ...+..+++|++|++++|.. ..+|.
T Consensus 215 ~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l-~~ip~ 270 (312)
T 1wwl_A 215 TPSGVCSALAAARVQLQGLDLSHN-SLRDAAG----------------------APSCDWPSQLNSLNLSFTGL-KQVPK 270 (312)
T ss_dssp CHHHHHHHHHHTTCCCSEEECTTS-CCCSSCC----------------------CSCCCCCTTCCEEECTTSCC-SSCCS
T ss_pred chHHHHHHHHhcCCCCCEEECCCC-cCCcccc----------------------hhhhhhcCCCCEEECCCCcc-Chhhh
Confidence 22 222 235677888888775 3443221 12234567888888888654 47777
Q ss_pred CCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1344 GWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1344 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
.+. ++|+.|++++| .++.+|. +..+++|++|++++++
T Consensus 271 ~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 665 88999999994 6888876 8889999999999885
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=6.1e-14 Score=162.80 Aligned_cols=220 Identities=19% Similarity=0.184 Sum_probs=151.0
Q ss_pred cccccEEEeecCCCcccch-hhhhCCCCccEEEEecCCCCcccCCC--CCCCCcceEEEcCCCccccchhhhccccccCc
Q 040015 1089 LLSLQRLEISECPYFKELP-EKFYELSTLKVLRISNCPSLVAFPEM--GLPSTLVGLEIRSCEALQFLPEKMMHESQKNK 1165 (1399)
Q Consensus 1089 l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~ls~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~ 1165 (1399)
++++++|+|++|. ++.+| ..|.++++|++|+|++|..++.++.. ..++++..+.+.+++.+..++...+.
T Consensus 29 ~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~------ 101 (350)
T 4ay9_X 29 PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ------ 101 (350)
T ss_dssp CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC------
T ss_pred CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh------
Confidence 3466667776666 33444 34666777777777766555555532 23355555555555566666554433
Q ss_pred ccCCcceEEecCCCCCCccCccccc--CCCCeEeeecCCCCCccCccccccccccceeccccCCC-CCCceEeecCCCCC
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLS--GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNL-AFLDHLEIDDCPLL 1242 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l-~~L~~L~l~~~~~~ 1242 (1399)
.+++|++|++++ +.+..++...+. .++..|++.+++.+..++... |..+ ..++.|++++|..
T Consensus 102 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-------------f~~~~~~l~~L~L~~N~i- 166 (350)
T 4ay9_X 102 NLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-------------FVGLSFESVILWLNKNGI- 166 (350)
T ss_dssp CCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-------------STTSBSSCEEEECCSSCC-
T ss_pred hccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccc-------------hhhcchhhhhhccccccc-
Confidence 566777777776 345555543332 256778888878888776543 3444 4678888888874
Q ss_pred cccCCCCCCCCCccceecccccCCccCccc-cccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCccccc
Q 040015 1243 QSFPEPCLPTSMLRYARISNCQNLKFLPNG-MYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGL 1321 (1399)
Q Consensus 1243 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l 1321 (1399)
+.++......++|+.|++++++.++.+|.. +..+++|+.|+++++ .++.+|.. ...+|+.|.+.++++++.++ .+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCCCCC--CT
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcCcCC--Cc
Confidence 566666666778999999888888888864 578899999999885 78888875 46789999998888888776 37
Q ss_pred ccCCCccEEEEcC
Q 040015 1322 HRLTCLADFSFGG 1334 (1399)
Q Consensus 1322 ~~l~~L~~L~l~~ 1334 (1399)
.++++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 7888999998865
No 86
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=2.8e-13 Score=158.59 Aligned_cols=292 Identities=12% Similarity=0.091 Sum_probs=173.7
Q ss_pred CCCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-----cCH
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-----FDV 244 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~ 244 (1399)
....||||+++++.|.+ +.. +++.|+|++|+|||+|++++++.. .. ..+|+.+... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC----------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCH
Confidence 34579999999999999 731 489999999999999999999742 22 2578887643 233
Q ss_pred HHHHHHHHHHcc-------------CCC-----CC----------CCcchHHHHHHHHHHhcCcceEEEecCCcCCCc--
Q 040015 245 LRVTTTILKSVT-------------SKP-----AD----------VDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-- 294 (1399)
Q Consensus 245 ~~~~~~i~~~l~-------------~~~-----~~----------~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-- 294 (1399)
...+..+.+.+. ... .. .......+...+.+... ++++||+||++..+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 444444433321 000 00 01224455555544322 489999999965321
Q ss_pred -chhhhhhcccCCCCCCcEEEEEcCChhhHHhc-----------Cc-cceEeCCCCCccchHHHHHHhhhcCCCCCCCcc
Q 040015 295 -DDWDLICSPLKAGARGSKIIITTRDSSIAASM-----------GT-VAAHHLECLAFEDCSSIFMNQAFENRNTGISPD 361 (1399)
Q Consensus 295 -~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~ 361 (1399)
.+|..+...+.....+.++|+|+|.......+ +. ...+.+.+|+.+++.+++......... ..+.
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~ 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKD 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCc
Confidence 22322222222222467899999976542211 11 257899999999999999875421111 1112
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHHhcCCChHHHHHH-HhhhccCCCCCcchHHHHHH-Hhhc--CCChhhhhhhhhhc
Q 040015 362 LETIGAEIVNKCEGLLLAVKRMGIILRSREDKGEWYDM-LNRNIWDLPHDESSILQTLG-LSYH--HLPPHLKQCFAYCS 437 (1399)
Q Consensus 362 ~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~s 437 (1399)
..+|++.|+|+|+++..++..+....+...|..- .+.. ...+...+. +.++ .||+..+..+..+|
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1789999999999999999876543343334221 1110 001222222 2221 68889999999999
Q ss_pred cCCCCcccchHHHHHHHH-HhCCccccccchhHHHHHHHHHHHHHhccccccccCCCceEE-ehHHHHHHH
Q 040015 438 VFPAGYEFDKEKLVLLWM-AEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSVHNSSLYV-MHGLMKDLA 506 (1399)
Q Consensus 438 ~fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-mH~lv~~~a 506 (1399)
+ +. +...+....- ..|. .........+++.|++.+++.... ..|. .|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 8 22 4444433211 1121 001244678999999999998753 3465 578888763
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=5.3e-14 Score=157.65 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=35.4
Q ss_pred eEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCCCC-CCCCCCCccceecccCc
Q 040015 831 QLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQFLP-SLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 831 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 886 (1399)
.|+++++....++.... ...+|+.|++++|......+ .++.+++|+.|++++|+
T Consensus 181 ~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 56666666555554443 23478888888887443333 26778888888888875
No 88
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.54 E-value=1.4e-14 Score=134.00 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHhhhchhhHHHHHhHH
Q 040015 11 FLQVLFDRLASREFLNLLRSRKYDDLLEKLKITLLTVTALLNDAEEK--QFNSPSVGKWLHMAKDALYDAEDVLDELATE 88 (1399)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 88 (1399)
+++.+++||++....++....||++++++|+++|+.|+++|.||+.+ +..+++++.|+++|||+|||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888899999999999999999999999999999987 5678999999999999999999999999998
Q ss_pred HH
Q 040015 89 AL 90 (1399)
Q Consensus 89 ~~ 90 (1399)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=1.4e-13 Score=153.43 Aligned_cols=106 Identities=26% Similarity=0.470 Sum_probs=73.6
Q ss_pred cccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCcccccccc-ccCCCCCcEEEccCCCCCCCcCh-hh
Q 040015 577 RVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPDS-TGNLCNLQSIILLECYSLSKLPT-DL 653 (1399)
Q Consensus 577 ~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L~~L~~L~L~~~~~~~~lP~-~i 653 (1399)
.+|..+. ++|+.|+|++|.++.+| ..|.++++|++|+|++|.+..+|.. +.++++|++|++++| .+..+|. .|
T Consensus 30 ~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVF 105 (270)
T ss_dssp SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHc
Confidence 4554432 56788888888888774 4678888888888888888877764 477888888888887 4555554 46
Q ss_pred ccCCCCCEEEccCCcccccCcc-ccCCCCCCccC
Q 040015 654 GNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLS 686 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 686 (1399)
.++++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 7788888888888877766544 44555555443
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=2.1e-14 Score=174.18 Aligned_cols=216 Identities=11% Similarity=0.055 Sum_probs=127.2
Q ss_pred ccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhCC
Q 040015 1034 STGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYEL 1113 (1399)
Q Consensus 1034 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 1113 (1399)
.+..+++|++|++++|.... .++ +..+++|+.|++++|. ++.++ ..++|++|++++|......+ ..+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~-l~~l~------~~~~L~~L~L~~N~l~~~~~---~~l 119 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNY-VQELL------VGPSIETLHAANNNISRVSC---SRG 119 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSE-EEEEE------ECTTCCEEECCSSCCCCEEE---CCC
T ss_pred HHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCc-CCCCC------CCCCcCEEECcCCcCCCCCc---ccc
Confidence 34455556666665555222 222 5556666666666663 22222 23566666666666433222 234
Q ss_pred CCccEEEEecCCCCcccC-CCCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCC
Q 040015 1114 STLKVLRISNCPSLVAFP-EMGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGT 1192 (1399)
Q Consensus 1114 ~~L~~L~ls~c~~l~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 1192 (1399)
++|+.|++++|..-...| .++.+++|+.|++++|......|..+.. .+++|+.|++++| .+..++.....++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 192 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------SSDTLEHLNLQYN-FIYDVKGQVVFAK 192 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG------GTTTCCEEECTTS-CCCEEECCCCCTT
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh------hCCcccEEecCCC-ccccccccccCCC
Confidence 566666666644322222 2233456666666665433333333221 3566777777774 4555554444558
Q ss_pred CCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCC-ccCcc
Q 040015 1193 LKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNL-KFLPN 1271 (1399)
Q Consensus 1193 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~lp~ 1271 (1399)
|+.|++++| .++.+|.. +..+++|+.|++++|... .+|..+..+++|+.|++++|+.. ..+|.
T Consensus 193 L~~L~Ls~N-~l~~~~~~--------------~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 193 LKTLDLSSN-KLAFMGPE--------------FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEECCSS-CCCEECGG--------------GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred CCEEECCCC-CCCCCCHh--------------HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 888888874 46666544 457788888888888754 57777777888888888887755 35667
Q ss_pred ccccCCCcceEeec
Q 040015 1272 GMYILTSLQEFSIH 1285 (1399)
Q Consensus 1272 ~~~~l~~L~~L~l~ 1285 (1399)
++..+++|+.|+++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 77778888888775
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=5.6e-14 Score=156.71 Aligned_cols=200 Identities=17% Similarity=0.097 Sum_probs=140.9
Q ss_pred ccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF 1245 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~ 1245 (1399)
.+++|+.|++.++ .+..++.....++|+.|++++|. +..++. +..+++|++|++++|......
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~---------------l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDISA---------------LKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCGG---------------GTTCTTCCEEECTTSCCCCCC
T ss_pred cccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCchh---------------hcCCCCCCEEECCCCccCccC
Confidence 4667888888875 45555543334588888888854 555432 567888888888888766555
Q ss_pred CCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCccccccc
Q 040015 1246 PEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHR 1323 (1399)
Q Consensus 1246 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~ 1323 (1399)
+..+..+++|++|++++|......+..+..+++|++|++++| .++.++... .+++|+.|++++| +++.+.+..+..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 179 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDK 179 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcC
Confidence 556678888888888887644333444678888888888886 677777643 3578888888875 566777777788
Q ss_pred CCCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCCCCCCCCC
Q 040015 1324 LTCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECDNLQTVPE 1391 (1399)
Q Consensus 1324 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 1391 (1399)
+++|++|++++|......|..+..+++|+.|++++|+.. ..+++|++|+++.+..-+.+|.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 888888888887655555555678888888888886522 3355677777776655555554
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=9.7e-14 Score=157.64 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=91.8
Q ss_pred cccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccC
Q 040015 552 NEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGN 631 (1399)
Q Consensus 552 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~ 631 (1399)
.++++|+.|.+.++.. ..++ .+..+++|++|+|++|.++.+|. +..+++|++|+|++|.+..+| .+..
T Consensus 38 ~~l~~L~~L~l~~~~i--------~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV--------TTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHHHTCCEEECTTSCC--------CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred HHcCCcCEEEeeCCCc--------cCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 3566777777776542 2333 25778888888888888888866 888888888888888888876 5888
Q ss_pred CCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 632 LCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
+++|++|++++| .+..+|. +..+++|++|++++|.++.++. ++.+++|+.|+.
T Consensus 106 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEc
Confidence 888888888888 5666664 8888888888888888887765 666777776654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=4.7e-13 Score=149.91 Aligned_cols=203 Identities=19% Similarity=0.165 Sum_probs=147.2
Q ss_pred CCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCccc
Q 040015 1168 FLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSF 1245 (1399)
Q Consensus 1168 ~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~ 1245 (1399)
++|++|+++++ .++.++...+ .++|++|++++| .++.++... +.++++|++|++++|......
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-------------YQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTT-------------TTTCTTCCEEECTTCCCCEEC
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHH-------------ccCCcCCCEEECCCCccCccC
Confidence 35888888874 5666654333 247888888885 556655433 678899999999999877666
Q ss_pred CCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccC--CCC-CCCCCcceEEeccCCCCCCCcccccc
Q 040015 1246 PEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSF--PEG-GLPPNLISLSILDCENLKPSSEWGLH 1322 (1399)
Q Consensus 1246 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l--~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~ 1322 (1399)
+..+..+++|++|++++|......+..+..+++|++|++++| .++.+ |.. ...++|+.|++++| .++.+....+.
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 170 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR 170 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhh
Confidence 677888999999999987654433446788999999999985 55553 332 23578999999884 56666666676
Q ss_pred cCCCcc----EEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCcccc-ccCCCCCcCceeccCCCCCCCC
Q 040015 1323 RLTCLA----DFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPN-GLKNLKYLETLEIWECDNLQTV 1389 (1399)
Q Consensus 1323 ~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 1389 (1399)
.+++|+ +|++++|.. ..++.......+|+.|++++| .++.+|. .+..+++|++|++++||-....
T Consensus 171 ~l~~L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp HHHTCTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhhccccceeeecCCCcc-cccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccC
Confidence 666666 899998654 455544445568999999995 5888884 5688999999999977644333
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=154.92 Aligned_cols=203 Identities=18% Similarity=0.105 Sum_probs=139.6
Q ss_pred CCcccEEEecCCCCcc-cCccc--CCCCCCcEEeccCCccccc-c----ccccCCCCCcEEEccCCCCCCCcChhhccCC
Q 040015 586 LKCLRVLSFSACRITA-LPDSV--GDLKHLRYLDLSRTAIKQL-P----DSTGNLCNLQSIILLECYSLSKLPTDLGNLT 657 (1399)
Q Consensus 586 l~~Lr~L~Ls~~~i~~-lp~~i--~~L~~L~~L~Ls~n~i~~l-P----~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~ 657 (1399)
+++|++|+|++|.+.. .|..+ +.+++|++|+|++|.+... | ..+..+++|++|++++|......|..|+.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4669999999999885 47777 8999999999999998842 2 3456799999999999955444556789999
Q ss_pred CCCEEEccCCcccc---cCcc--ccCCCCCCccCceeeCCCCCCCccccccccccccEEEEcCCcCCCCHhHHHHhhcCC
Q 040015 658 GLRHLRMSGSRLRE---MPMK--MYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQGELVISGLQNVICFTDAMEANLKD 732 (1399)
Q Consensus 658 ~L~~L~l~~~~l~~---lp~~--i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~~l~i~~l~~~~~~~~~~~~~l~~ 732 (1399)
+|++|++++|.+.. ++.. ++.+++|++|+...+ .+.. ........+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N------~l~~---------------------l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT------GMET---------------------PTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS------CCCC---------------------HHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC------CCCc---------------------hHHHHHHHHhc
Confidence 99999999998653 3322 467888888865322 1111 11111122345
Q ss_pred CCCCceEEEEecCCCCCCCCCCChhHHHHHHHhhccccccccCCCCCCCCCchhhhccccchhhhhhhhhcccCCCCCCC
Q 040015 733 KKELTQLVLQWSDDFGDSTNDGDEEEVFKVAQLHRNRKDLNASGCRNPRFPSFREAAGAYRQESVELKSERRSSLDGSGN 812 (1399)
Q Consensus 733 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 812 (1399)
+++|+.|++++|...+.. |
T Consensus 223 l~~L~~L~Ls~N~l~~~~--------------------------------p----------------------------- 241 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATV--------------------------------N----------------------------- 241 (310)
T ss_dssp TCCCSSEECTTSCCCCCC--------------------------------C-----------------------------
T ss_pred CCCCCEEECCCCCCCccc--------------------------------h-----------------------------
Confidence 677888888776651100 0
Q ss_pred hhhHHhhhhcCCCCCCCCeEEEeecCCCCCCcCcCCCCcCceeEEEEeCCCCCCCCCCCCCCCCccceecccCc
Q 040015 813 ERVEMDVLEMLQPHENLKQLTINDYGGIKFPGWIASPLFCNMTVLVLSNCRNCQFLPSLGRLPMLKDLTIEGME 886 (1399)
Q Consensus 813 ~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 886 (1399)
..+..+..+++|+.|++++|....+|.++. ++|+.|+|++|... .+|.+..+++|+.|++++|+
T Consensus 242 -----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 -----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP----AKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC----SCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT
T ss_pred -----hhHHhccCcCcCCEEECCCCCCCchhhhhc----CCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC
Confidence 001122234688888888888888777653 68888888888743 44667788888888888875
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=2e-12 Score=142.24 Aligned_cols=177 Identities=19% Similarity=0.150 Sum_probs=131.7
Q ss_pred CcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCC
Q 040015 1169 LLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEP 1248 (1399)
Q Consensus 1169 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 1248 (1399)
..+++++++ ..++.+|... +++|+.|+++++ .+..++... |.++++|++|++++|......+..
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~-~~~l~~L~L~~n-~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGI-PADTEKLDLQST-GLATLSDAT-------------FRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCC-CTTCCEEECTTS-CCCCCCTTT-------------TTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCeEEecCC-CCccccCCCC-CCCCCEEEccCC-CcCccCHhH-------------hcCcccCCEEECCCCcCCccCHhH
Confidence 366777776 5677777543 458999999984 456555433 678899999999999877766777
Q ss_pred CCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1249 CLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1249 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
+..+++|++|++++|......+..+..+++|++|++++| .++.++...+ .++|+.|+++++ +++.+....|..+++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 888999999999997644333456678999999999885 7777876533 578888888774 677777777888888
Q ss_pred ccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCc
Q 040015 1327 LADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKS 1364 (1399)
Q Consensus 1327 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 1364 (1399)
|++|++++|......+..+..+++|+.|++++|+ +.+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ-FDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-BCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc-eeC
Confidence 8888888876554444467778888888888865 443
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.42 E-value=1.6e-12 Score=144.93 Aligned_cols=180 Identities=19% Similarity=0.175 Sum_probs=144.1
Q ss_pred CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc
Q 040015 1191 GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP 1270 (1399)
Q Consensus 1191 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 1270 (1399)
++|+.|++++|. ++.++. +..+++|++|++++|.... ++ .+..+++|++|++++|......+
T Consensus 41 ~~L~~L~l~~~~-i~~~~~---------------l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQG---------------IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp TTCCEEECTTSC-CCCCTT---------------GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCT
T ss_pred cceeeeeeCCCC-cccccc---------------cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccCh
Confidence 489999999854 666553 4678999999999998544 43 57789999999999986443334
Q ss_pred cccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCC
Q 040015 1271 NGMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLP 1348 (1399)
Q Consensus 1271 ~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 1348 (1399)
..+..+++|++|++++| .++.++... .+++|+.|++.+| .++.+....+..+++|++|++++|......+..+..+
T Consensus 103 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 45688999999999996 677777653 3689999999886 6788888788999999999999987554445557889
Q ss_pred CCcceEEcCCCCCCCccc-cccCCCCCcCceeccCCCCCCCCCC
Q 040015 1349 KNLSSLYLERLPNLKSLP-NGLKNLKYLETLEIWECDNLQTVPE 1391 (1399)
Q Consensus 1349 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~ 1391 (1399)
++|+.|++++| .+..++ ..+..+++|++|++++|+.....|.
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 181 TQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 99999999996 577776 5678999999999999987666653
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=4.9e-13 Score=150.29 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=64.5
Q ss_pred CCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
..+++|+.|++++|.++.+| .++.+++|++|+|++|.+..+|. +.++++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 34666777777777777665 36667777777777777777666 777777777777776 4555543 67777777777
Q ss_pred ccCCcccccCccccCCCCCCccC
Q 040015 664 MSGSRLREMPMKMYKLKNLQTLS 686 (1399)
Q Consensus 664 l~~~~l~~lp~~i~~L~~L~~L~ 686 (1399)
+++|.++.++ .+..+++|+.|+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCcCCCCh-hhcCCCCCCEEE
Confidence 7777666552 344444444443
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=3.8e-14 Score=164.32 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=149.1
Q ss_pred CCcceEEEcCCCccccchhhhccccccCccc--CCcceEEecCCCCCCcc-CcccccCCCCeEeeecCCCCCc--cCc-c
Q 040015 1137 STLVGLEIRSCEALQFLPEKMMHESQKNKDA--FLLEYLVIEGCPALVSL-PRDKLSGTLKVLEIENCGNLQS--LPE-Q 1210 (1399)
Q Consensus 1137 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~l-~~~~~~~~L~~L~l~~c~~l~~--l~~-~ 1210 (1399)
..++.++++++... +.... .+ +.++.+++.++. +... +...-.++|++|++++|. +.. ++. .
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~-------~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~ 114 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTG-------RLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL 114 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHH-------HHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH
T ss_pred hhheeeccccccCC---HHHHH-------hhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHH
Confidence 44788999886432 22211 23 679999998853 3333 222223589999999976 432 333 2
Q ss_pred ccccccccceeccc---------cCCCCCCceEeecCCCCCc--ccCCCCCCCCCccceecccccCCcc--CccccccCC
Q 040015 1211 MICSSLENLKVAGC---------LHNLAFLDHLEIDDCPLLQ--SFPEPCLPTSMLRYARISNCQNLKF--LPNGMYILT 1277 (1399)
Q Consensus 1211 ~~~~~L~~L~l~~~---------~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~l~ 1277 (1399)
..+++|++|++++| +..+++|++|++++|..+. .++..+..+++|++|++++|..+.. ++..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 34778888888877 5668888888888884343 2455556677888888888745553 556667788
Q ss_pred -CcceEeecCCC-CCc--cCCCC-CCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccc-cCCCCCCCCCc
Q 040015 1278 -SLQEFSIHGCS-SLM--SFPEG-GLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVS-FPKGWFLPKNL 1351 (1399)
Q Consensus 1278 -~L~~L~l~~c~-~l~--~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 1351 (1399)
+|++|++++|. .++ .++.. ...++|+.|++.+|..++......+.++++|++|++++|..+.. ....+..+++|
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 88888888874 332 22221 12568888888887766655556677888888888888763321 11235567888
Q ss_pred ceEEcCCCCCCCccc-cccCCC-CCcCceeccCCCCCCCC
Q 040015 1352 SSLYLERLPNLKSLP-NGLKNL-KYLETLEIWECDNLQTV 1389 (1399)
Q Consensus 1352 ~~L~l~~~~~l~~l~-~~~~~l-~~L~~L~l~~c~~l~~l 1389 (1399)
+.|++++| ++ ..+..+ .+|+.|++++| .++.+
T Consensus 275 ~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 275 KTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp CEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCT
T ss_pred CEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccc
Confidence 88888886 33 223333 34667777554 44443
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=6e-14 Score=162.62 Aligned_cols=261 Identities=18% Similarity=0.194 Sum_probs=134.3
Q ss_pred ccEEEeecCCCcccchhhhhCC--CCccEEEEecCCCCcccCCCCCCCCcceEEEcCCCcccc-chhhhccccccCcccC
Q 040015 1092 LQRLEISECPYFKELPEKFYEL--STLKVLRISNCPSLVAFPEMGLPSTLVGLEIRSCEALQF-LPEKMMHESQKNKDAF 1168 (1399)
Q Consensus 1092 L~~L~L~~~~~~~~l~~~~~~l--~~L~~L~ls~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~~~~~~~ 1168 (1399)
++.++++++... +..+..+ ++++.|++++|..-...+.....++|+.|++++|..... ++..+ ..++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-------~~~~ 118 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-------SQCS 118 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-------TTBC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-------hhCC
Confidence 444555444322 2333333 455555555443222222333335555555555432111 22211 1355
Q ss_pred CcceEEecCCCCCC-ccCcc-cccCCCCeEeeecCCCCCc--cCccccccccccceeccccCCCCCCceEeecCC-CCCc
Q 040015 1169 LLEYLVIEGCPALV-SLPRD-KLSGTLKVLEIENCGNLQS--LPEQMICSSLENLKVAGCLHNLAFLDHLEIDDC-PLLQ 1243 (1399)
Q Consensus 1169 ~L~~L~l~~c~~l~-~l~~~-~~~~~L~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~-~~~~ 1243 (1399)
+|++|++++|. +. ..+.. .-.++|++|++++|..++. ++.. +.++++|++|++++| ....
T Consensus 119 ~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~--------------~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 119 KLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL--------------LSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp CCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH--------------HHHCTTCCEEECCCCTTCCH
T ss_pred CCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH--------------HhcCCCCCEEcCCCCCCcCh
Confidence 56666666553 22 11110 0123677777776654442 2221 345667777777777 3322
Q ss_pred c-cCCCCCCCC-Cccceeccccc-CC--ccCccccccCCCcceEeecCCCCCcc--CCCCCCCCCcceEEeccCCCCCCC
Q 040015 1244 S-FPEPCLPTS-MLRYARISNCQ-NL--KFLPNGMYILTSLQEFSIHGCSSLMS--FPEGGLPPNLISLSILDCENLKPS 1316 (1399)
Q Consensus 1244 ~-~~~~~~~~~-~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~c~~l~~~ 1316 (1399)
. ++..+..++ +|++|++++|. .+ ..+|..+..+++|+.|++++|..++. ++.-...++|+.|++.+|..+...
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 1 344455566 77777777764 23 33455556677777777777764442 111123467777777777655444
Q ss_pred cccccccCCCccEEEEcCCCCccccCC-CCCCC-CCcceEEcCCCCCCCc-cccccCCCCCcCceeccCCC
Q 040015 1317 SEWGLHRLTCLADFSFGGCQGLVSFPK-GWFLP-KNLSSLYLERLPNLKS-LPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1317 ~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
....+.++++|++|++++| ++. .+..+ .+|+.|++++| .+.. .|..+.+ ....+++-..|.
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~~~~~~~~-~~~~~i~g~~~~ 327 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTIARPTIGN-KKNQEIWGIKCR 327 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCTTCSSCSS-TTCCCBTTBCCS
T ss_pred HHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccccCCcccc-cccceeechhhH
Confidence 4446778899999999987 333 22222 34777888774 4555 4444443 333334444443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=9.7e-13 Score=149.94 Aligned_cols=201 Identities=16% Similarity=0.073 Sum_probs=144.3
Q ss_pred cCCcceEEecCCCCCCccCccc---ccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCc
Q 040015 1167 AFLLEYLVIEGCPALVSLPRDK---LSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQ 1243 (1399)
Q Consensus 1167 ~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~ 1243 (1399)
+++|++|++++|.-....+... -.++|++|++++|..-...+... .. .+..+++|++|++++|....
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------~~----~~~~~~~L~~L~Ls~n~l~~ 159 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------EL----QQWLKPGLKVLSIAQAHSPA 159 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------HH----HTTBCSCCCEEEEECCSSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------HH----HhhhccCCCEEEeeCCCcch
Confidence 4569999999975444444432 23489999999965333222110 00 03468899999999998766
Q ss_pred ccCCCCCCCCCccceecccccCCcc--Cc--cccccCCCcceEeecCCCCCccCCCC-----CCCCCcceEEeccCCCCC
Q 040015 1244 SFPEPCLPTSMLRYARISNCQNLKF--LP--NGMYILTSLQEFSIHGCSSLMSFPEG-----GLPPNLISLSILDCENLK 1314 (1399)
Q Consensus 1244 ~~~~~~~~~~~L~~L~l~~c~~l~~--lp--~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~l~ 1314 (1399)
..+..+..+++|++|++++|..... ++ ..+..+++|++|++++| .++.++.. ...++|+.|+++++ .++
T Consensus 160 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~ 237 (310)
T 4glp_A 160 FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLR 237 (310)
T ss_dssp CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCC
T ss_pred hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCC
Confidence 6677888899999999999875442 32 23367899999999986 56655431 23478999999874 466
Q ss_pred CCcccccccC---CCccEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1315 PSSEWGLHRL---TCLADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1315 ~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
...+..+..+ ++|++|++++|.. ..+|..+ +++|+.|++++| .++.+|. +..+++|++|++++++
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ccchhhHHhccCcCcCCEEECCCCCC-Cchhhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 5544445555 7999999999654 4788765 389999999995 6888875 7788999999999986
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=3.4e-12 Score=140.34 Aligned_cols=87 Identities=23% Similarity=0.394 Sum_probs=48.8
Q ss_pred CcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcC-hhhccCCCCCEEE
Q 040015 587 KCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLP-TDLGNLTGLRHLR 663 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~ 663 (1399)
+.|+.|+|++|.++.+ |..|.++++|++|+|++|.|..++. .+.++++|++|++++| .+..+| ..|..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 3556666666666655 3455666666666666666655443 3556666666666665 333333 3355666666666
Q ss_pred ccCCcccccCc
Q 040015 664 MSGSRLREMPM 674 (1399)
Q Consensus 664 l~~~~l~~lp~ 674 (1399)
+++|.++.+|.
T Consensus 114 L~~N~l~~~~~ 124 (251)
T 3m19_A 114 LGGNQLKSLPS 124 (251)
T ss_dssp CCSSCCCCCCT
T ss_pred cCCCcCCCcCh
Confidence 66665555443
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.4e-11 Score=143.51 Aligned_cols=294 Identities=13% Similarity=-0.001 Sum_probs=181.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc----cc--ccceEEEEeCCcc-CH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GR--FDLKVWVCVSDQF-DV 244 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~ 244 (1399)
..++||+++++++.+++.... .....+.+.|+|++|+||||+|+.+++...-. .. ....+|+++.... +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCChHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 679999999999998886531 11235689999999999999999999842111 01 2346788877766 88
Q ss_pred HHHHHHHHHHccCCC-CCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcch-hhh-hhcccCCCCCCcEEEEEcCChh
Q 040015 245 LRVTTTILKSVTSKP-ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDD-WDL-ICSPLKAGARGSKIIITTRDSS 321 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~-~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~-~~~-l~~~l~~~~~gs~ilvTtR~~~ 321 (1399)
..++..++.++.+.. .........+...+.+.+..++.+|||||++.-.... .+. +...+... .+..||+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 888899988884322 2222224566677777887766699999996532111 122 21112222 6778999998753
Q ss_pred hH----Hhc--CccceEeCCCCCccchHHHHHHhhhcC-CCCCCCccHHHHHHHHHHHcc---Cchh-HHHHHHHHH--h
Q 040015 322 IA----ASM--GTVAAHHLECLAFEDCSSIFMNQAFEN-RNTGISPDLETIGAEIVNKCE---GLLL-AVKRMGIIL--R 388 (1399)
Q Consensus 322 v~----~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~l--~ 388 (1399)
.. ..+ .-...+.+++++.++..+++...+... ......+ +..+.|++.++ |.|. |+..+-.+. .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21 111 112389999999999999999875421 1111222 34667788887 9887 444443332 2
Q ss_pred ---cCCChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCCCCcccchHHHHHHHHHhCCcccccc
Q 040015 389 ---SREDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPAGYEFDKEKLVLLWMAEGFVQQSNA 465 (1399)
Q Consensus 389 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~ 465 (1399)
..-+.+++..+++.. ....+.-+++.|+++.+..+..++....+..+. +......-..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 123466777766553 124566778899998888887777611101111 11111111222 11
Q ss_pred chhHHHHHHHHHHHHHhccccccc
Q 040015 466 KKKLEEVGREYFHELVSRSFFRQS 489 (1399)
Q Consensus 466 ~~~~~~~~~~~~~~L~~~~l~~~~ 489 (1399)
........++++.|+.+|+++..
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234567889999999999864
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.9e-11 Score=144.71 Aligned_cols=296 Identities=15% Similarity=0.110 Sum_probs=181.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc----ccccceEEEEeCCccCHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD----GRFDLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 247 (1399)
..++||+++++++..++...- .....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 679999999999999986531 11335688999999999999999999742111 00124578888888888899
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHh--cCcceEEEecCCcCCCcc--hhhhhhccc---CCC--CCCcEEEEEcC
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKL--AGKKFLLVLDDVWSRRND--DWDLICSPL---KAG--ARGSKIIITTR 318 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l--~~~r~LlvlDdv~~~~~~--~~~~l~~~l---~~~--~~gs~ilvTtR 318 (1399)
+..++.+++............+...+.+.+ .+++.+|||||++.-... ..+.+...+ ... ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999999997654433333556666666666 356889999999653211 222222222 111 34567888887
Q ss_pred ChhhHHhc-----C--ccceEeCCCCCccchHHHHHHhhhcC-CCCCCCccHHHHHHHHHHHcc---CchhH-HHHHHHH
Q 040015 319 DSSIAASM-----G--TVAAHHLECLAFEDCSSIFMNQAFEN-RNTGISPDLETIGAEIVNKCE---GLLLA-VKRMGII 386 (1399)
Q Consensus 319 ~~~v~~~~-----~--~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~---g~PLa-i~~~~~~ 386 (1399)
.......+ . ....+.+++++.++..+++.+.+... ......+ +..+.|++.++ |.|.. +.++..+
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 65321111 1 11478999999999999998875321 1111222 34667788887 99943 3333322
Q ss_pred Hh-----c--CCChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhc-cCCCCcccchHHHHHHHH---
Q 040015 387 LR-----S--REDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCS-VFPAGYEFDKEKLVLLWM--- 455 (1399)
Q Consensus 387 l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~--- 455 (1399)
.. . .-+.+.+..++... ....+.-++..|+++.+..+..++ ++-....+....+.+...
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 1 12456666665542 123456678899999888887776 443222444453333321
Q ss_pred -HhCCccccccchhHHHHHHHHHHHHHhccccccc
Q 040015 456 -AEGFVQQSNAKKKLEEVGREYFHELVSRSFFRQS 489 (1399)
Q Consensus 456 -a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 489 (1399)
..| +. ......+..++++|...|+++..
T Consensus 323 ~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 11 11235677889999999999874
No 104
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=4.1e-11 Score=141.82 Aligned_cols=298 Identities=12% Similarity=0.028 Sum_probs=186.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccc-ccceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGR-FDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++||+.+++++.+++...... ..+..+.+.|+|++|+||||+|+.+++.. ... -...+|+.++...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN-PGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS-TTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-CCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 56999999999999999763100 11223489999999999999999999742 222 124677887787888899999
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHhc--CcceEEEecCCcCCCcchhhhhhcccCCCC----CCcEEEEEcCChhhHH
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKLA--GKKFLLVLDDVWSRRNDDWDLICSPLKAGA----RGSKIIITTRDSSIAA 324 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~ 324 (1399)
++..++............+...+.+.+. +++.+||+|+++.-+.+....+...+.... .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9998875443322235566666666654 567899999997654445555554443211 3667888888765433
Q ss_pred hcC-------ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHc---------cCchhHHHHHHHHHh
Q 040015 325 SMG-------TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKC---------EGLLLAVKRMGIILR 388 (1399)
Q Consensus 325 ~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~l~ 388 (1399)
.+. ....+.+++++.++..+++...+...... ..-..+..+.|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE--GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT--TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 322 12369999999999999998876431111 112245678889998 788765544433221
Q ss_pred ------cC--CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCC---CCcccchHHHHHHHHH-
Q 040015 389 ------SR--EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFP---AGYEFDKEKLVLLWMA- 456 (1399)
Q Consensus 389 ------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a- 456 (1399)
.. -+.+....+...... ..+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~----------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF----------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC----------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh----------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 123333333332210 0122345678888888888777654 2224555666554433
Q ss_pred ---hCCccccccchhHHHHHHHHHHHHHhcccccccc
Q 040015 457 ---EGFVQQSNAKKKLEEVGREYFHELVSRSFFRQSV 490 (1399)
Q Consensus 457 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~ 490 (1399)
.|... ........++++|..++++....
T Consensus 322 ~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 322 CEEYGERP------RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHcCCCC------CCHHHHHHHHHHHHhCCCeEEee
Confidence 22111 11244678999999999998754
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=2.5e-12 Score=137.75 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=109.3
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCcccccccc-ccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPDS-TGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L 632 (1399)
+.++.|.+.++.. ..++...|..+++|++|+|++|.|+.+ |..|.++++|++|+|++|.|+.+|.. |.++
T Consensus 32 ~~l~~L~l~~n~i--------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNTI--------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCC--------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcC--------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 5788888887653 457777889999999999999999988 88999999999999999999999875 6889
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcc-ccCCCCCCccCceee
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSHFVV 690 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 690 (1399)
++|++|++++|......|..|..+++|++|++++|.++.+|.. +..+++|+.|+...+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999999999944444467799999999999999999998875 777888888765433
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=5.5e-12 Score=141.69 Aligned_cols=122 Identities=22% Similarity=0.335 Sum_probs=98.7
Q ss_pred ccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccccccc
Q 040015 551 FNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTG 630 (1399)
Q Consensus 551 ~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~ 630 (1399)
...+++|+.|.+.++.. ..++. +..+++|++|+|++|.++.++. +.++++|++|+|++|.+..+|. ++
T Consensus 42 ~~~l~~L~~L~l~~~~i--------~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI--------KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp HHHHHTCCEEECTTSCC--------CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred hhhcCcccEEEccCCCc--------ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 34577788888877642 23332 6788999999999999998866 8999999999999999998765 99
Q ss_pred CCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 631 NLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 631 ~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
.+++|++|++++| .+..+| .+..+++|++|++++|.++.+ ..++.+++|+.|+.
T Consensus 110 ~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 110 DLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL 163 (291)
T ss_dssp TCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred cCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEc
Confidence 9999999999998 666664 688999999999999998877 45677777776654
No 107
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=1.9e-11 Score=144.62 Aligned_cols=296 Identities=14% Similarity=0.084 Sum_probs=179.1
Q ss_pred CCccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc---cceEEEEeCCccCHHHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF---DLKVWVCVSDQFDVLRV 247 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~ 247 (1399)
+..|+||+++++.+.+++...- .....+.+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~---~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY---REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG---GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH---cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 3679999999999999987531 0123568899999999999999999983 32222 24678887776777788
Q ss_pred HHHHHHHccCCCCCCCcchHHHHHHHHHHhc--CcceEEEecCCcCCC----cchhhhhhcccCC-CCCCcEEEEEcCCh
Q 040015 248 TTTILKSVTSKPADVDDDLNLLQVCLREKLA--GKKFLLVLDDVWSRR----NDDWDLICSPLKA-GARGSKIIITTRDS 320 (1399)
Q Consensus 248 ~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~--~~r~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~ 320 (1399)
+..++.+++...........++...+.+.+. +++.+||+|+++.-. .+.+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888888765433222235555566666664 458999999995521 2333334333321 23355678888766
Q ss_pred hhHHhcC-------ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHcc---CchhHHHH-HHHHHh-
Q 040015 321 SIAASMG-------TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCE---GLLLAVKR-MGIILR- 388 (1399)
Q Consensus 321 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~---g~PLai~~-~~~~l~- 388 (1399)
.....+. ....+.+++++.++..+++.+.+..... ...-..++.+.|++.++ |.|..+.. +..+..
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4332221 1147999999999999999886532111 11122455677788887 99984443 332221
Q ss_pred ----c--CCChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhccCCC-C-cccchHHHHHHH--HH--
Q 040015 389 ----S--REDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCSVFPA-G-YEFDKEKLVLLW--MA-- 456 (1399)
Q Consensus 389 ----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w--~a-- 456 (1399)
. .-+.+.+..++... ....+.-.+..+|.+.+..+..++.+.+ + ..+....+.+.. ++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 12345555555442 1235666778899988888877774322 2 123343332221 11
Q ss_pred hCCccccccchhHHHHHHHHHHHHHhccccccc
Q 040015 457 EGFVQQSNAKKKLEEVGREYFHELVSRSFFRQS 489 (1399)
Q Consensus 457 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 489 (1399)
.| +.. ........+++.|...|+++..
T Consensus 322 ~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 12 111 1124467789999999999764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=3.1e-12 Score=157.79 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=57.9
Q ss_pred CCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEE
Q 040015 584 PRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLR 663 (1399)
Q Consensus 584 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 663 (1399)
..+++|+.|+|++|.+..+| .|+.|++|++|+|++|.|..+|. +..+++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 34556666666666666665 36666666666666666666655 666666666666666 444444 466666666666
Q ss_pred ccCCcccccCccccCCCCCCcc
Q 040015 664 MSGSRLREMPMKMYKLKNLQTL 685 (1399)
Q Consensus 664 l~~~~l~~lp~~i~~L~~L~~L 685 (1399)
+++|.+..+| .+..+++|+.|
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEE
T ss_pred ecCCCCCCCc-cccCCCccCEE
Confidence 6666665543 34444444444
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=1.1e-13 Score=163.37 Aligned_cols=130 Identities=19% Similarity=0.193 Sum_probs=72.3
Q ss_pred cccccCccceeccCCCCCCcccccccccc---cccccCCCCcccEEEecCCCCcc----cCccc-------CCCCCCcEE
Q 040015 550 AFNEAECLRTFLPLDPTGEIGVSYLADRV---PRDILPRLKCLRVLSFSACRITA----LPDSV-------GDLKHLRYL 615 (1399)
Q Consensus 550 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~Ls~~~i~~----lp~~i-------~~L~~L~~L 615 (1399)
.+..+++|+.|.+.++.. .... ....|..+++|++|+|++|.+.. +|..+ ..+++|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTI-------GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHHCSCCCEEECTTSEE-------CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHhcCCCccEEECCCCCC-------CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 345566677777665431 1111 11235567777777777764442 23333 566777777
Q ss_pred eccCCcccc-----ccccccCCCCCcEEEccCCCCCC----CcChhhccC---------CCCCEEEccCCccc--ccC--
Q 040015 616 DLSRTAIKQ-----LPDSTGNLCNLQSIILLECYSLS----KLPTDLGNL---------TGLRHLRMSGSRLR--EMP-- 673 (1399)
Q Consensus 616 ~Ls~n~i~~-----lP~~i~~L~~L~~L~L~~~~~~~----~lP~~i~~L---------~~L~~L~l~~~~l~--~lp-- 673 (1399)
+|++|.+.. +|..+.++++|++|++++|.... .++..+..+ ++|++|++++|.+. .+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 777777664 56667777777777777773321 222333334 67777777777664 233
Q ss_pred -ccccCCCCCCccC
Q 040015 674 -MKMYKLKNLQTLS 686 (1399)
Q Consensus 674 -~~i~~L~~L~~L~ 686 (1399)
..+..+++|++|+
T Consensus 180 ~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 180 AKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHCTTCCEEE
T ss_pred HHHHHhCCCcCEEE
Confidence 2344455555544
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=9.4e-12 Score=134.33 Aligned_cols=125 Identities=23% Similarity=0.384 Sum_probs=106.5
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCcccccccc-ccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPDS-TGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L 632 (1399)
++|+.|.+.++.. ..+++..|..+++|++|+|++|.++.+| ..|..+++|++|+|++|.|+.+|.. +..+
T Consensus 40 ~~L~~L~Ls~n~i--------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQI--------TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSCC--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCcc--------CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 6788888887653 4566677899999999999999999886 5578999999999999999988764 6899
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcc-ccCCCCCCccCce
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSHF 688 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~ 688 (1399)
++|++|++++| .+..+|..+..+++|++|++++|.++.+|.. +..+++|+.|+..
T Consensus 112 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred hhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 99999999999 7779999999999999999999999988865 6777888777653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=1.8e-11 Score=148.96 Aligned_cols=184 Identities=27% Similarity=0.407 Sum_probs=100.8
Q ss_pred CcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccc
Q 040015 1138 TLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLE 1217 (1399)
Q Consensus 1138 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1217 (1399)
+|+.|++++|. ++.+|... +++|++|+++++ .++.+| .+.++|+.|++++| .++.+|. .
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l---------~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l------ 118 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL---------PPQITVLEITQN-ALISLP--ELPASLEYLDACDN-RLSTLPE-L------ 118 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC---------CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-C------
T ss_pred CccEEEeCCCC-CCccCHhH---------cCCCCEEECcCC-CCcccc--cccCCCCEEEccCC-CCCCcch-h------
Confidence 66677776653 44455432 234666666663 455555 23346666666663 4444544 1
Q ss_pred cceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCC
Q 040015 1218 NLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGG 1297 (1399)
Q Consensus 1218 ~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~ 1297 (1399)
.+ +|++|++++|.... +|. .+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|.
T Consensus 119 --------~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-- 177 (571)
T 3cvr_A 119 --------PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE-- 177 (571)
T ss_dssp --------CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC--
T ss_pred --------hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch--
Confidence 11 66666666665433 554 45667777776654 444554 4566777777664 4555665
Q ss_pred CCCCcceEEeccCCCCCCCcccccccCCCc-------cEEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCcccccc
Q 040015 1298 LPPNLISLSILDCENLKPSSEWGLHRLTCL-------ADFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGL 1369 (1399)
Q Consensus 1298 ~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 1369 (1399)
+.++|+.|++++| +++.++. +.. +| +.|++++| .+..+|..+..+++|+.|+|++|+.-..+|..+
T Consensus 178 l~~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 178 LPESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCTTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhCCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 4466666666653 4544443 222 44 66666664 334556555556666666666654334444333
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=1.2e-11 Score=150.45 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=45.5
Q ss_pred CcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccC
Q 040015 587 KCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSG 666 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 666 (1399)
++|++|+|++|.|+.+| ..+++|++|+|++|.|+.+|. +.+ +|++|++++| .+..+|. .+++|++|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 45666666666666665 334566666666666666655 444 6666666665 4444555 456666666666
Q ss_pred CcccccCc
Q 040015 667 SRLREMPM 674 (1399)
Q Consensus 667 ~~l~~lp~ 674 (1399)
|.++.+|.
T Consensus 150 N~l~~lp~ 157 (571)
T 3cvr_A 150 NQLTMLPE 157 (571)
T ss_dssp SCCSCCCC
T ss_pred CccCcCCC
Confidence 66555553
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=9.1e-12 Score=133.38 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=104.0
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccc-cccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-STGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L 632 (1399)
..++.|.+.++.. ..-.+..+|..+++|++|+|++|.|+.++ ..|..+++|++|+|++|.|..+|. .|+++
T Consensus 32 ~~~~~L~L~~N~l-------~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNEF-------TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSCC-------CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCEEEcCCCcC-------CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 3467777776642 22225567889999999999999999884 589999999999999999998876 58999
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCccccc-CccccCCCCCCccCceee
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREM-PMKMYKLKNLQTLSHFVV 690 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~ 690 (1399)
++|++|++++|......|..|..+++|++|++++|.++.+ |..+..+++|++|+...+
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9999999999954444477799999999999999999988 556888888888765433
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=6.6e-12 Score=125.50 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=105.2
Q ss_pred cCccceeccCCCCCCccccccc-ccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccc-ccccccC
Q 040015 554 AECLRTFLPLDPTGEIGVSYLA-DRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQ-LPDSTGN 631 (1399)
Q Consensus 554 ~~~Lr~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~-lP~~i~~ 631 (1399)
.++++.|.+.++.. . ..+|. .|..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..+++
T Consensus 16 ~~~l~~L~l~~n~l-------~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRS-------NEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBC-------BTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcC-------ChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 46788888877642 2 34554 578899999999999999988 789999999999999999997 8888888
Q ss_pred CCCCcEEEccCCCCCCCcC--hhhccCCCCCEEEccCCcccccCc----cccCCCCCCccCc
Q 040015 632 LCNLQSIILLECYSLSKLP--TDLGNLTGLRHLRMSGSRLREMPM----KMYKLKNLQTLSH 687 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~ 687 (1399)
+++|++|++++| .+..+| ..++.+++|++|++++|.++.+|. .++.+++|+.|+.
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999999999999 667665 779999999999999999998886 5788888888864
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=1.1e-11 Score=130.36 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=45.5
Q ss_pred cCCCCcccEEEecCCCCcc-cCcccCCCCCCcEEeccCCcccc-ccccccCCCCCcEEEccCCCCCCCcChhhccCCCCC
Q 040015 583 LPRLKCLRVLSFSACRITA-LPDSVGDLKHLRYLDLSRTAIKQ-LPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLR 660 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~Ls~n~i~~-lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 660 (1399)
|..+++|++|++++|.++. .|..|+.+++|++|+|++|.+.. .|..++++++|++|++++|..+..+| .+..+++|+
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 3444444444444444443 24444444444444444444442 33444444444444444442244443 344444444
Q ss_pred EEEccCCcccccCccccCCCCCCcc
Q 040015 661 HLRMSGSRLREMPMKMYKLKNLQTL 685 (1399)
Q Consensus 661 ~L~l~~~~l~~lp~~i~~L~~L~~L 685 (1399)
+|++++|.++.++ .+..+++|+.|
T Consensus 163 ~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 163 SLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp EEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred EEECCCCCCcChH-HhccCCCCCEE
Confidence 4444444444443 33334444433
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=1.1e-11 Score=126.64 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=107.1
Q ss_pred cCccceeccCCCCCCccccccc-ccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccc-ccccccC
Q 040015 554 AECLRTFLPLDPTGEIGVSYLA-DRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQ-LPDSTGN 631 (1399)
Q Consensus 554 ~~~Lr~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~-lP~~i~~ 631 (1399)
.++|+.|.+.++.. . ..+|. .|..+++|++|+|++|.++.+ ..|+.+++|++|+|++|.+.. +|..+++
T Consensus 23 ~~~L~~L~l~~n~l-------~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKS-------NDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBC-------BTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCC-------ChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 46788888877642 2 24554 368899999999999999988 789999999999999999997 7777888
Q ss_pred CCCCcEEEccCCCCCCCcC--hhhccCCCCCEEEccCCcccccCc----cccCCCCCCccCceee
Q 040015 632 LCNLQSIILLECYSLSKLP--TDLGNLTGLRHLRMSGSRLREMPM----KMYKLKNLQTLSHFVV 690 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~ 690 (1399)
+++|++|++++| .+..+| ..+..+++|++|++++|.++.+|. .+..+++|+.|+...+
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 999999999999 777776 679999999999999999999887 6888999999887554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=2.8e-12 Score=141.64 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=61.2
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
+..+++|++|++++|.++.+| .++.+++|++|+|++|.|..+|. ++++++|++|++++| .+..+|.. .. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccEE
Confidence 456667777777777777666 56667777777777777776666 677777777777776 55555542 22 667777
Q ss_pred EccCCcccccCccccCCCCCCcc
Q 040015 663 RMSGSRLREMPMKMYKLKNLQTL 685 (1399)
Q Consensus 663 ~l~~~~l~~lp~~i~~L~~L~~L 685 (1399)
++++|.++.+| .++.+++|+.|
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEE
T ss_pred EccCCccCCCh-hhcCcccccEE
Confidence 77776665543 24444444333
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.6e-12 Score=151.72 Aligned_cols=237 Identities=13% Similarity=0.050 Sum_probs=124.8
Q ss_pred cCCCCCcceeeecccCCcccccc----cccccCC-ccceeeeccchhhhhhhhhhc--ccc-cccccEEEeecCCCcccc
Q 040015 1035 TGGHRSLTYMRICQISKLDCLVE----GYFQHFT-ALEELQISHLAELMTLSNKIG--LRS-LLSLQRLEISECPYFKEL 1106 (1399)
Q Consensus 1035 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~~~~~~~--~~~-l~~L~~L~L~~~~~~~~l 1106 (1399)
....++|++|++++|. ++..+. ..+.+++ +|++|++++|......+.... +.. +++|++|+|++|......
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 3444557777777776 444443 4466666 788888887754332222211 111 277888888888755444
Q ss_pred hhh----hhCC-CCccEEEEecCCCCcccCCC-------CCCCCcceEEEcCCCccccchhhhccccccCcccC-CcceE
Q 040015 1107 PEK----FYEL-STLKVLRISNCPSLVAFPEM-------GLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAF-LLEYL 1173 (1399)
Q Consensus 1107 ~~~----~~~l-~~L~~L~ls~c~~l~~~~~~-------~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~-~L~~L 1173 (1399)
+.. +..+ ++|++|++++|. ++..+.. ..+.+|+.|++++|..-......+.. .....+ +|++|
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~---~l~~~~~~L~~L 172 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ---ILAAIPANVNSL 172 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH---HHHTSCTTCCEE
T ss_pred HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH---HHhcCCccccEe
Confidence 432 4444 778888888765 4443321 11357777777776433211111100 001122 57777
Q ss_pred EecCCCCCCccCcc-------cccCCCCeEeeecCCCCCccCccccccccccceeccccCC-CCCCceEeecCCCCCccc
Q 040015 1174 VIEGCPALVSLPRD-------KLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHN-LAFLDHLEIDDCPLLQSF 1245 (1399)
Q Consensus 1174 ~l~~c~~l~~l~~~-------~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~-l~~L~~L~l~~~~~~~~~ 1245 (1399)
++++| .++..... ..+++|++|++++|. ++...... +...+.. .++|++|++++|......
T Consensus 173 ~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~---------l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 173 NLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE---------LAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp ECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH---------HHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred eecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH---------HHHHHhcCCCCceEEECcCCCCCcHH
Confidence 77775 33333221 111367777777643 44311100 0000222 357777777777654322
Q ss_pred ----CCCCCCCCCccceecccccC-------CccCccccccCCCcceEeecCC
Q 040015 1246 ----PEPCLPTSMLRYARISNCQN-------LKFLPNGMYILTSLQEFSIHGC 1287 (1399)
Q Consensus 1246 ----~~~~~~~~~L~~L~l~~c~~-------l~~lp~~~~~l~~L~~L~l~~c 1287 (1399)
...+..+++|++|++++|.. +..++..+..+++|+.|+++++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 23345567777777777651 2223445556777777777775
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=1.4e-12 Score=153.93 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred CCCCcceeeecccCCccccc---ccccccCCccceeeeccchh--hh-hhhhhh-----cccccccccEEEeecCCCcc-
Q 040015 1037 GHRSLTYMRICQISKLDCLV---EGYFQHFTALEELQISHLAE--LM-TLSNKI-----GLRSLLSLQRLEISECPYFK- 1104 (1399)
Q Consensus 1037 ~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~--l~-~~~~~~-----~~~~l~~L~~L~L~~~~~~~- 1104 (1399)
.+++|++|++++|......+ ...+..+++|+.|++++|.. +. .+|... .+..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45566666666664222211 11255667777777776521 11 111111 12356777777777777544
Q ss_pred ---cchhhhhCCCCccEEEEecCC
Q 040015 1105 ---ELPEKFYELSTLKVLRISNCP 1125 (1399)
Q Consensus 1105 ---~l~~~~~~l~~L~~L~ls~c~ 1125 (1399)
.+|..+..+++|++|++++|.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCC
Confidence 356667777777777777764
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=8.2e-12 Score=154.04 Aligned_cols=166 Identities=21% Similarity=0.230 Sum_probs=99.4
Q ss_pred CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc
Q 040015 1191 GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP 1270 (1399)
Q Consensus 1191 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 1270 (1399)
.+|+.|++++|. +..++. +..+++|+.|+|++|......+ +..+++|+.|+|++|. +..+|
T Consensus 43 ~~L~~L~l~~n~-i~~l~~---------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~ 103 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQG---------------IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS 103 (605)
T ss_dssp TTCCCCBCTTCC-CCCCTT---------------GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT
T ss_pred CCCCEEECcCCC-CCCChH---------------HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh
Confidence 489999998854 666664 3456666666666665433222 5556666666666653 34444
Q ss_pred cccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCCCC
Q 040015 1271 NGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLPKN 1350 (1399)
Q Consensus 1271 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 1350 (1399)
.+..+++|+.|+|++| .+..++....+++|+.|++++| .++.+ ..+..+++|+.|+|++|......| +..+++
T Consensus 104 -~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~ 176 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176 (605)
T ss_dssp -TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred -hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence 4556666666666664 4444543334566666666653 34443 345666777777776654433333 556667
Q ss_pred cceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1351 LSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1351 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
|+.|+|++| .+..+| .+..+++|+.|++++|+
T Consensus 177 L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 777777774 466664 46666777777777664
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=3.2e-11 Score=126.86 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred cCCcceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccC
Q 040015 1167 AFLLEYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFP 1246 (1399)
Q Consensus 1167 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~ 1246 (1399)
+++|++|+++++ .+..++.....++|++|++++| .+..++. +..+++|++|++++|......+
T Consensus 43 l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~---------------l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYNP---------------ISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCGG---------------GTTCTTCCEEEEECTTCBGGGS
T ss_pred cCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcchh---------------hhcCCCCCEEEeECCccCcccC
Confidence 445666666663 4445443223347777777776 4544432 5678888888888888766667
Q ss_pred CCCCCCCCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1247 EPCLPTSMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1247 ~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
..+..+++|++|++++|......|..+..+++|+.|++++|..++.+|. +..+++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-------------------------l~~l~~ 160 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-------------------------LKTLPE 160 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-------------------------GGGCSS
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh-------------------------hcCCCC
Confidence 7777888888888888776555667777888888888888754555542 344555
Q ss_pred ccEEEEcCCCCccccCCCCCCCCCcceEEcCCC
Q 040015 1327 LADFSFGGCQGLVSFPKGWFLPKNLSSLYLERL 1359 (1399)
Q Consensus 1327 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 1359 (1399)
|++|++++|. +..++ .+..+++|+.|++++|
T Consensus 161 L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 161 LKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC
T ss_pred CCEEECCCCC-CcChH-HhccCCCCCEEEeeCc
Confidence 5555555543 23333 3445556666666653
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.5e-11 Score=126.66 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=109.6
Q ss_pred hcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccccc
Q 040015 549 EAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDS 628 (1399)
Q Consensus 549 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~ 628 (1399)
..+..+.+|+.|.+.++.. ..++ .+....++|++|+|++|.++.+ ..|+.+++|++|+|++|.|..+|..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l--------~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI--------PVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECTTSCC--------CSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEeeCCCC--------chhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 3456778899999888753 2343 3333445999999999999988 6899999999999999999999876
Q ss_pred c-cCCCCCcEEEccCCCCCCCcCh--hhccCCCCCEEEccCCcccccCcc----ccCCCCCCccCceee
Q 040015 629 T-GNLCNLQSIILLECYSLSKLPT--DLGNLTGLRHLRMSGSRLREMPMK----MYKLKNLQTLSHFVV 690 (1399)
Q Consensus 629 i-~~L~~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~ 690 (1399)
+ +.+++|++|++++| .+..+|. .+..+++|++|++++|.+..+|.. ++.+++|+.|+...+
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 5 99999999999999 7788887 799999999999999999999875 888999998876443
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=5.5e-11 Score=126.47 Aligned_cols=183 Identities=21% Similarity=0.199 Sum_probs=128.6
Q ss_pred eEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCC
Q 040015 1172 YLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLP 1251 (1399)
Q Consensus 1172 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 1251 (1399)
.++.++ ..++.+|... +++|++|+++++ .++.++... +.++++|++|++++|......+..+..
T Consensus 11 ~v~c~~-~~l~~~p~~~-~~~l~~L~l~~n-~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 11 TVECYS-QGRTSVPTGI-PAQTTYLDLETN-SLKSLPNGV-------------FDELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp EEECCS-SCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTT-------------TTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred EEEecC-CCccCCCCCC-CCCCcEEEcCCC-ccCcCChhh-------------hcccccCcEEECCCCccCccChhhcCC
Confidence 344433 4566666543 348889999885 566665543 578889999999988765444455677
Q ss_pred CCCccceecccccCCccCcc-ccccCCCcceEeecCCCCCccCCCCC--CCCCcceEEeccCCCCCCCcccccccCCCcc
Q 040015 1252 TSMLRYARISNCQNLKFLPN-GMYILTSLQEFSIHGCSSLMSFPEGG--LPPNLISLSILDCENLKPSSEWGLHRLTCLA 1328 (1399)
Q Consensus 1252 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~ 1328 (1399)
+++|++|++++|. +..+|. .+..+++|++|++++| .++.++... ..++|+.|+++++ .++.+....+..+++|+
T Consensus 75 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCcc
Confidence 8899999999875 445544 4578899999999885 677777643 3578888888774 56677776788888899
Q ss_pred EEEEcCCCCccccCCCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceeccCCC
Q 040015 1329 DFSFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIWECD 1384 (1399)
Q Consensus 1329 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1384 (1399)
+|++++|... ..+++|+.|+++.+..-..+|..+..++. ++..|.
T Consensus 152 ~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 152 YIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCS 196 (208)
T ss_dssp EEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBT
T ss_pred EEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC----Cccccc
Confidence 9998887533 24457888888887666678877776655 445554
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=3e-11 Score=129.35 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=110.8
Q ss_pred ccccceeeeeeeccccccchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-ccc
Q 040015 528 IFDKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSV 606 (1399)
Q Consensus 528 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i 606 (1399)
++...+.+.+..+..........|..+++|+.|.+.++.. ..++...|.++++|++|+|++|.++.+| ..|
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--------~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--------TDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC--------CEECTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC--------CEECHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence 4455677777766544332223477899999999988753 4567778999999999999999999885 569
Q ss_pred CCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCccc
Q 040015 607 GDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 607 ~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~ 670 (1399)
..+++|++|+|++|.|..+ |..|.++++|++|++++|......|..|..+++|++|++++|.+.
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999999988 678999999999999999444444788999999999999999875
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=4.7e-11 Score=127.05 Aligned_cols=125 Identities=24% Similarity=0.397 Sum_probs=102.8
Q ss_pred cCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCc-ccCCCCCCcEEeccCCcccccccc-ccC
Q 040015 554 AECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPD-SVGDLKHLRYLDLSRTAIKQLPDS-TGN 631 (1399)
Q Consensus 554 ~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~Ls~n~i~~lP~~-i~~ 631 (1399)
.++++.|.+.++.. ..++..+|..+++|++|+|++|.++.+|. .|..+++|++|+|++|.+..+|.. +++
T Consensus 27 ~~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSL--------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEcCCCcc--------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 35788888877653 45677778899999999999999998854 578999999999999999988764 689
Q ss_pred CCCCcEEEccCCCCCCCcChh-hccCCCCCEEEccCCcccccCcc-ccCCCCCCccCc
Q 040015 632 LCNLQSIILLECYSLSKLPTD-LGNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSH 687 (1399)
Q Consensus 632 L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 687 (1399)
+++|++|++++| .+..+|.. +.++++|++|++++|.++.+|.. +..+++|+.|+.
T Consensus 99 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 99 LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 999999999998 56666654 78999999999999999888876 677788877764
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=2.8e-12 Score=149.68 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=48.6
Q ss_pred eeecccCCcccccccccccCCccceeeeccchhhhhhhhh--hcccccc-cccEEEeecCCCcccchhhhhCC-----CC
Q 040015 1044 MRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNK--IGLRSLL-SLQRLEISECPYFKELPEKFYEL-----ST 1115 (1399)
Q Consensus 1044 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~l~-~L~~L~L~~~~~~~~l~~~~~~l-----~~ 1115 (1399)
++++.+. +....+.++...++|++|++++|......+.. ..+..++ +|++|+|++|......+..+..+ ++
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3445554 33334444555666888888888633222211 1234566 78888888887655555555443 78
Q ss_pred ccEEEEecCC
Q 040015 1116 LKVLRISNCP 1125 (1399)
Q Consensus 1116 L~~L~ls~c~ 1125 (1399)
|++|++++|.
T Consensus 82 L~~L~Ls~n~ 91 (362)
T 3goz_A 82 VTSLNLSGNF 91 (362)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCc
Confidence 8888888764
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=6.7e-11 Score=127.61 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=113.6
Q ss_pred cccccceeeeeeeccccccchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cc
Q 040015 527 RIFDKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DS 605 (1399)
Q Consensus 527 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~ 605 (1399)
.++...+++.+..+..... ....|..+++|+.|.+.++.. ..++...|..+++|++|+|++|.|+.+| ..
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l--------~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL--------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC--------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC--------CCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 3556778888876654332 124577889999999988753 5678888999999999999999999985 55
Q ss_pred cCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcCh-hhccCCCCCEEEccCCcccc
Q 040015 606 VGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPT-DLGNLTGLRHLRMSGSRLRE 671 (1399)
Q Consensus 606 i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~l~~ 671 (1399)
|..+++|++|+|++|.|..+|..+..+++|++|++++| .+..+|. .|..+++|++|++++|.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 79999999999999999999999999999999999999 6667764 58999999999999998753
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=4.1e-11 Score=125.10 Aligned_cols=110 Identities=26% Similarity=0.418 Sum_probs=91.6
Q ss_pred ccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcC-hhh
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLP-TDL 653 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP-~~i 653 (1399)
..+|..++ ++|++|+|++|.|+.+|..|.++++|++|+|++|.|+.+|. .|.++++|++|++++| .+..+| ..|
T Consensus 23 ~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f 98 (193)
T 2wfh_A 23 KVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF 98 (193)
T ss_dssp SSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred CcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 45666553 57899999999999999999999999999999999998865 6899999999999999 555554 569
Q ss_pred ccCCCCCEEEccCCcccccCcc-ccCCCCCCccCcee
Q 040015 654 GNLTGLRHLRMSGSRLREMPMK-MYKLKNLQTLSHFV 689 (1399)
Q Consensus 654 ~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~ 689 (1399)
.++++|++|++++|.++.+|.. +..+++|+.|+...
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 9999999999999999998875 77788888776543
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=8.3e-11 Score=129.76 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=117.2
Q ss_pred cccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccc
Q 040015 550 AFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDST 629 (1399)
Q Consensus 550 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i 629 (1399)
.+..+++|+.|.+.++.. ..++ .+..+++|++|+|++|.++.+|. +..+++|++|+|++|.+..+|...
T Consensus 36 ~~~~l~~L~~L~l~~n~i--------~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI--------QSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp CHHHHTTCSEEECTTSCC--------CCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred chhhcCcCcEEECcCCCc--------ccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc
Confidence 456788899998887653 3444 36789999999999999999876 999999999999999999988744
Q ss_pred cCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccccCCCCCCccCceeeCCCCCCCcccccccccccc
Q 040015 630 GNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKMYKLKNLQTLSHFVVGKDRGSGIKDLKEMQQLQG 709 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~i~~L~~l~~L~~ 709 (1399)
. .+|++|++++| .+..+| .++++++|++|++++|.++.+| .++.+++|+.|+...+ .+..+
T Consensus 105 ~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N------~i~~~-------- 165 (263)
T 1xeu_A 105 S--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN------EITNT-------- 165 (263)
T ss_dssp C--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS------CCCBC--------
T ss_pred c--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC------cCcch--------
Confidence 4 99999999999 677775 5999999999999999999886 6777888887764221 11111
Q ss_pred EEEEcCCcCCCCHhHHHHhhcCCCCCCceEEEEecCC
Q 040015 710 ELVISGLQNVICFTDAMEANLKDKKELTQLVLQWSDD 746 (1399)
Q Consensus 710 ~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 746 (1399)
..+..+++|+.|+++.|..
T Consensus 166 ------------------~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 ------------------GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ------------------TTSTTCCCCCEEEEEEEEE
T ss_pred ------------------HHhccCCCCCEEeCCCCcc
Confidence 2345677888999988765
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=1.4e-10 Score=124.05 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=90.0
Q ss_pred eEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCC
Q 040015 1172 YLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLP 1251 (1399)
Q Consensus 1172 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 1251 (1399)
.++.++ ..++.+|.. ++++|+.|++++ +.++.++... |..+++|++|++++|......|..+..
T Consensus 15 ~v~c~~-~~l~~iP~~-l~~~l~~L~l~~-n~i~~i~~~~-------------~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTN-LPETITEIRLEQ-NTIKVIPPGA-------------FSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp EEECTT-SCCSSCCSS-CCTTCCEEECCS-SCCCEECTTS-------------STTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEEcCC-CCcCcCCCc-cCcCCCEEECCC-CcCCCcCHhH-------------hhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 444444 355556543 234666666666 3455544322 455666666666666655444555556
Q ss_pred CCCccceecccccCCccCccc-cccCCCcceEeecCCCCCccCCCCCCCCCcceEEeccCCCCCCCcccccccCCCccEE
Q 040015 1252 TSMLRYARISNCQNLKFLPNG-MYILTSLQEFSIHGCSSLMSFPEGGLPPNLISLSILDCENLKPSSEWGLHRLTCLADF 1330 (1399)
Q Consensus 1252 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L 1330 (1399)
+++|++|+|++|. ++.+|.. +..+++|+.|++++| . ++.+.+..|..+++|++|
T Consensus 79 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~-----------------------l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 79 LRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-K-----------------------INCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C-----------------------CCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-C-----------------------CCEeCHHHcCCCCCCCEE
Confidence 6666666666543 3344433 344555555555553 2 333444567788899999
Q ss_pred EEcCCCCccccCCCCCCCCCcceEEcCCCCCCCc
Q 040015 1331 SFGGCQGLVSFPKGWFLPKNLSSLYLERLPNLKS 1364 (1399)
Q Consensus 1331 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 1364 (1399)
++++|......+..+..+++|+.|++++|+ +.+
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c 166 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNP-FIC 166 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC-EEC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCC-cCC
Confidence 999976555445567888999999999965 444
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=5.4e-11 Score=121.58 Aligned_cols=137 Identities=23% Similarity=0.212 Sum_probs=110.9
Q ss_pred ccccceeeeeeeccccccchhhcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcc-cCccc
Q 040015 528 IFDKARHSSYIRCRRETSTKFEAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITA-LPDSV 606 (1399)
Q Consensus 528 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i 606 (1399)
.+...+++.+..+..........+..+++|+.|.+.++.. ..+ ..|..+++|++|+|++|.++. +|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--------~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--------ISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--------CCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--------CCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 3456777777766443111112357789999999987753 223 557899999999999999998 68888
Q ss_pred CCCCCCcEEeccCCcccccc--ccccCCCCCcEEEccCCCCCCCcCh----hhccCCCCCEEEccCCcccccCcc
Q 040015 607 GDLKHLRYLDLSRTAIKQLP--DSTGNLCNLQSIILLECYSLSKLPT----DLGNLTGLRHLRMSGSRLREMPMK 675 (1399)
Q Consensus 607 ~~L~~L~~L~Ls~n~i~~lP--~~i~~L~~L~~L~L~~~~~~~~lP~----~i~~L~~L~~L~l~~~~l~~lp~~ 675 (1399)
..+++|++|+|++|.+..+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|.+..+|..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88999999999999999987 78999999999999999 6667776 799999999999999999888764
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=6.9e-11 Score=123.49 Aligned_cols=108 Identities=21% Similarity=0.345 Sum_probs=74.8
Q ss_pred ccccccccCCCCcccEEEecCCCCcccCc--ccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCc-Ch
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITALPD--SVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKL-PT 651 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~l-P~ 651 (1399)
..+|..++ .+|++|+|++|.++.+|. .|+.+++|++|+|++|.|+.+ |..|+++++|++|++++| .+..+ |.
T Consensus 21 ~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNK 96 (192)
T ss_dssp SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHH
Confidence 34555443 267778888887777754 377778888888888877766 567777888888888877 44444 34
Q ss_pred hhccCCCCCEEEccCCccccc-CccccCCCCCCccCc
Q 040015 652 DLGNLTGLRHLRMSGSRLREM-PMKMYKLKNLQTLSH 687 (1399)
Q Consensus 652 ~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~ 687 (1399)
.|.++++|++|++++|.++.+ |..++.+++|++|+.
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 477778888888888877765 445666777776654
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=1.2e-10 Score=135.47 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=84.4
Q ss_pred ceEEecCCCCCCccCcccccCCCCeEeeecCCCCCccCccccccccccceeccccC-CCCCCceEeecCCCCCcccCCCC
Q 040015 1171 EYLVIEGCPALVSLPRDKLSGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLH-NLAFLDHLEIDDCPLLQSFPEPC 1249 (1399)
Q Consensus 1171 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~ 1249 (1399)
+.++.++ ..++.+|.. ++..++.|++++ +.++.++... +. ++++|++|+|++|......+..+
T Consensus 21 ~~l~c~~-~~l~~iP~~-~~~~l~~L~Ls~-N~l~~l~~~~-------------~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQS-LPSYTALLDLSH-NNLSRLRAEW-------------TPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TEEECCS-SCCSSCCSS-CCTTCSEEECCS-SCCCEECTTS-------------SSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CEEEeCC-CCcCccCcc-CCCCCCEEECCC-CCCCccChhh-------------hhhcccccCEEECCCCcCCccChhhc
Confidence 3445544 456666653 344777888877 4566665443 34 67788888888877655555667
Q ss_pred CCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCccccc---cc
Q 040015 1250 LPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGL---HR 1323 (1399)
Q Consensus 1250 ~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l---~~ 1323 (1399)
..+++|++|+|++|. +..++ ..+..+++|+.|+|++| .+..++...+ +++|+.|++++ +.++.++...+ ..
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNK 161 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----
T ss_pred cCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCccc
Confidence 777788888888765 44443 34667777888887774 4554443222 24444554444 23343333333 33
Q ss_pred CCCccEEEEcCC
Q 040015 1324 LTCLADFSFGGC 1335 (1399)
Q Consensus 1324 l~~L~~L~l~~~ 1335 (1399)
+++|++|+|++|
T Consensus 162 l~~L~~L~L~~N 173 (361)
T 2xot_A 162 LPKLMLLDLSSN 173 (361)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcCCEEECCCC
Confidence 455555555553
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=4.5e-11 Score=151.67 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=94.8
Q ss_pred ccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCC
Q 040015 578 VPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLT 657 (1399)
Q Consensus 578 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~ 657 (1399)
++++.|..++.|++|+|++|.+..+|..+.++++|++|+|++|.|..+|..|++|++|++|+|++| .+..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 567778899999999999999999998888999999999999999999999999999999999999 5668999999999
Q ss_pred CCCEEEccCCcccccCccccCCCCCCccCc
Q 040015 658 GLRHLRMSGSRLREMPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 658 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 687 (1399)
+|++|+|++|.++.+|..|+.|++|++|++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeC
Confidence 999999999999999999999999988875
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=8.6e-11 Score=136.76 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=79.9
Q ss_pred ccceeccCCCCCCcccccccccccccccC-CCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCccccccc-cccCC
Q 040015 556 CLRTFLPLDPTGEIGVSYLADRVPRDILP-RLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-STGNL 632 (1399)
Q Consensus 556 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L 632 (1399)
.++.|.+.++.. ..++...|. ++++|++|+|++|.|+.++ ..|..+++|++|+|++|.|..+|. .|.++
T Consensus 40 ~l~~L~Ls~N~l--------~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 40 YTALLDLSHNNL--------SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TCSEEECCSSCC--------CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCEEECCCCCC--------CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 356666665542 345555565 6777777777777777663 557777777777777777776655 46777
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCccc----cCCCCCCccCc
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMKM----YKLKNLQTLSH 687 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~~ 687 (1399)
.+|++|+|++|......|..|.++++|++|++++|.++.+|..+ ..+++|+.|+.
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 77777777777333333556777777777777777777776653 34556655544
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=2.3e-10 Score=131.44 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=76.5
Q ss_pred cCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCCcc-EEEEcCCCCccccC-CCCCCCCC
Q 040015 1275 ILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLA-DFSFGGCQGLVSFP-KGWFLPKN 1350 (1399)
Q Consensus 1275 ~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~-~~~~~l~~ 1350 (1399)
.+++|+.|+++++ .++.+|...| +.+|+.|++.+ +++.+...+|.+|++|+ .+++.+ .+..++ ..|..+++
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 3678888888774 5777777655 35788888765 37777888888999998 999877 444554 57888999
Q ss_pred cceEEcCCCCCCCccc-cccCCCCCcCceec
Q 040015 1351 LSSLYLERLPNLKSLP-NGLKNLKYLETLEI 1380 (1399)
Q Consensus 1351 L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l 1380 (1399)
|+.|++++ +.++.|+ ..|.++++|++++.
T Consensus 299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 99999887 5688888 57888888888764
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=9.1e-11 Score=143.88 Aligned_cols=118 Identities=22% Similarity=0.254 Sum_probs=101.1
Q ss_pred ccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCC
Q 040015 556 CLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNL 635 (1399)
Q Consensus 556 ~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L 635 (1399)
.|+.|.+.++.. ..+|. |..+++|++|+|++|.|+.+|..|+.+++|++|+|++|.|+.+| .+++|++|
T Consensus 442 ~L~~L~Ls~n~l--------~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDL--------TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCC--------SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSC
T ss_pred CceEEEecCCCC--------CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCC
Confidence 477788877653 34664 78999999999999999999999999999999999999999999 89999999
Q ss_pred cEEEccCCCCCCCc--ChhhccCCCCCEEEccCCcccccCccccC----CCCCCcc
Q 040015 636 QSIILLECYSLSKL--PTDLGNLTGLRHLRMSGSRLREMPMKMYK----LKNLQTL 685 (1399)
Q Consensus 636 ~~L~L~~~~~~~~l--P~~i~~L~~L~~L~l~~~~l~~lp~~i~~----L~~L~~L 685 (1399)
++|+|++| .+..+ |..|+.|++|++|++++|.++.+|+.+.. +++|+.|
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 99999999 56666 89999999999999999999988875433 5666655
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=6.8e-10 Score=122.07 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=120.5
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++||+.+++.+..++.... ..+++.|+|++|+||||+|+.+++.......+.. ..+.. .. ....+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~-~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CD-NCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cH-HHHHH
Confidence 468999999999999997643 2348899999999999999999874221111100 00000 00 00011
Q ss_pred HHHccCC----CCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-h
Q 040015 252 LKSVTSK----PADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-I 322 (1399)
Q Consensus 252 ~~~l~~~----~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 322 (1399)
....... ........+.+...+... ..+++.+||+||++.-....++.+...+.....+..+|+||+... +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000000 000001112222211111 135678999999977555667777766655556788888887643 2
Q ss_pred HHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 323 AAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 323 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
... ......+++++++.++..+++.+.+..... .-..+..+.|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 123468999999999999999887754321 1123567899999999999988776544
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=6.8e-11 Score=118.04 Aligned_cols=102 Identities=19% Similarity=0.306 Sum_probs=91.1
Q ss_pred CCCcccEEEecCCCCc--ccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEE
Q 040015 585 RLKCLRVLSFSACRIT--ALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHL 662 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~--~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 662 (1399)
..++|+.|++++|.++ .+|..++.+++|++|++++|.+..+ ..++++++|++|++++|.....+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3578999999999998 8899999999999999999999988 789999999999999995444488888899999999
Q ss_pred EccCCcccccC--ccccCCCCCCccCc
Q 040015 663 RMSGSRLREMP--MKMYKLKNLQTLSH 687 (1399)
Q Consensus 663 ~l~~~~l~~lp--~~i~~L~~L~~L~~ 687 (1399)
++++|.++.+| ..++.+++|++|+.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 99999999875 67888888888865
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=1.9e-10 Score=117.68 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=84.4
Q ss_pred ccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCcccccccc-ccCCCCCcEEEccCCCCCCCcChh-
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPDS-TGNLCNLQSIILLECYSLSKLPTD- 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L~~L~~L~L~~~~~~~~lP~~- 652 (1399)
..+|..++ ++|++|+|++|.|+.+ |..|+++++|++|+|++|.|+.+|.. |.++++|++|+|++| .+..+|..
T Consensus 25 ~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 25 ASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 45676553 7899999999999988 77899999999999999999999875 589999999999999 67777765
Q ss_pred hccCCCCCEEEccCCcccccCccccCC
Q 040015 653 LGNLTGLRHLRMSGSRLREMPMKMYKL 679 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~lp~~i~~L 679 (1399)
|..+++|++|++++|.+...+..+..+
T Consensus 101 ~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp TTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred hccccCCCEEEeCCCCcccccccHHHH
Confidence 899999999999999988776554433
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=1.2e-10 Score=147.86 Aligned_cols=117 Identities=23% Similarity=0.388 Sum_probs=102.5
Q ss_pred hcccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCcccccccc
Q 040015 549 EAFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDS 628 (1399)
Q Consensus 549 ~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~ 628 (1399)
..+..++.|+.|.+.++.. ..+|..+| ++++|++|+|++|.|+.+|..|++|++|++|+|++|.|..+|..
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l--------~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI--------FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp ----CCCCCCEEECTTSCC--------SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred hhhccCCCCcEEECCCCCC--------CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 3466788899999988753 46777776 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCcccccCcc
Q 040015 629 TGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLREMPMK 675 (1399)
Q Consensus 629 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~~lp~~ 675 (1399)
|++|++|++|+|++| .+..+|..|++|++|++|+|++|.++..++.
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999999999999999 7789999999999999999999998855433
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=5.2e-10 Score=116.81 Aligned_cols=107 Identities=20% Similarity=0.321 Sum_probs=92.9
Q ss_pred ccceeccCCCCCCcccccccccccc-cccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccc-cccCC
Q 040015 556 CLRTFLPLDPTGEIGVSYLADRVPR-DILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPD-STGNL 632 (1399)
Q Consensus 556 ~Lr~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L 632 (1399)
.++.|.+.++.. ..++. .+|..+++|++|+|++|.|+.+ |..|..+++|++|+|++|.|..+|. .|.++
T Consensus 30 ~l~~L~l~~n~i--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNEL--------GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101 (192)
T ss_dssp TCSEEECCSCCC--------CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred CCCEEECCCCcC--------CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence 788888887653 34444 4689999999999999999988 8899999999999999999998866 58999
Q ss_pred CCCcEEEccCCCCCCCcChhhccCCCCCEEEccCCccc
Q 040015 633 CNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~l~ 670 (1399)
++|++|++++|......|..|..+++|++|++++|.+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999999999555556888999999999999999875
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.6e-10 Score=117.42 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=89.3
Q ss_pred cCCCCcccEEEecCCCCcccCcccCCCC-CCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChh-hccCCCCC
Q 040015 583 LPRLKCLRVLSFSACRITALPDSVGDLK-HLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTD-LGNLTGLR 660 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~ 660 (1399)
|..+.+|++|+|++|.++.+|. +..+. +|++|+|++|.|..+ ..++.+++|++|++++| .+..+|.. ++.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 5678999999999999999875 55555 999999999999998 68999999999999999 67778765 49999999
Q ss_pred EEEccCCcccccCc--cccCCCCCCccCc
Q 040015 661 HLRMSGSRLREMPM--KMYKLKNLQTLSH 687 (1399)
Q Consensus 661 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~ 687 (1399)
+|++++|.+..+|. .++.+++|+.|+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 99999999999887 6778888887765
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=8e-10 Score=115.27 Aligned_cols=106 Identities=24% Similarity=0.321 Sum_probs=92.6
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCccccccc-cccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPD-STGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L 632 (1399)
+.++.|.+.++.. ..+| ..|.++++|++|+|++|.|+.+ |..|.++++|++|+|++|.|..+|. .|.++
T Consensus 31 ~~l~~L~L~~n~i--------~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGNQF--------TLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TTCCEEECCSSCC--------CSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCEEECCCCcC--------chhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 5788888887653 3566 5689999999999999999988 5679999999999999999998875 79999
Q ss_pred CCCcEEEccCCCCCCCcCh-hhccCCCCCEEEccCCccc
Q 040015 633 CNLQSIILLECYSLSKLPT-DLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~l~ 670 (1399)
++|++|+|++| .+..+|. .|..+++|++|++++|.+.
T Consensus 102 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 102 KSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999999 6777776 4899999999999999864
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.01 E-value=3.2e-09 Score=114.55 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=117.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++||++.++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--- 85 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV--- 85 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHH---
T ss_pred HHHcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHH---
Confidence 468999999999999997543 23488999999999999999987321 1112 12333444333332222
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHh------cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhh-H
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKL------AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSI-A 323 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l------~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~ 323 (1399)
...+.... .+++.+||+||++.-....++.+...+.....+.++|+||+.... .
T Consensus 86 -------------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 86 -------------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (226)
T ss_dssp -------------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred -------------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcC
Confidence 11222221 256889999999776555566666665555567788888876531 1
Q ss_pred Hh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHH
Q 040015 324 AS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGI 385 (1399)
Q Consensus 324 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 385 (1399)
.. ......+.+.+++.++..+++.+.+...+. .-..+..+.|++.++|.|..+..+..
T Consensus 147 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 123348999999999999999887643221 11235677889999999986554443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=1.8e-09 Score=111.23 Aligned_cols=100 Identities=28% Similarity=0.456 Sum_probs=67.8
Q ss_pred CcccEEEecCCCCcccC-cccCCCCCCcEEeccCCcccccccc-ccCCCCCcEEEccCCCCCCCcChh-hccCCCCCEEE
Q 040015 587 KCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPDS-TGNLCNLQSIILLECYSLSKLPTD-LGNLTGLRHLR 663 (1399)
Q Consensus 587 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~ 663 (1399)
++|++|++++|.++.+| ..|+.+++|++|+|++|.+..+|.. ++.+++|++|++++| .+..+|.. +.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 56777777777777664 3457777777777777777776653 577777777777777 44455443 56777777777
Q ss_pred ccCCcccccCcc-ccCCCCCCccCc
Q 040015 664 MSGSRLREMPMK-MYKLKNLQTLSH 687 (1399)
Q Consensus 664 l~~~~l~~lp~~-i~~L~~L~~L~~ 687 (1399)
+++|.++.+|.. +..+++|++|+.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEe
Confidence 777777777665 355666666554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.1e-09 Score=112.04 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=87.9
Q ss_pred ccEEEecCCCCcccCcccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChh-hccCCCCCEEEccC
Q 040015 589 LRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTD-LGNLTGLRHLRMSG 666 (1399)
Q Consensus 589 Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~ 666 (1399)
-+.+++++|.++.+|..+. .+|++|+|++|.|..+ |..|+++++|++|+|++| .+..+|.. |.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3789999999999998875 8999999999999988 568999999999999999 77778766 68999999999999
Q ss_pred CcccccCcc-ccCCCCCCccCceee
Q 040015 667 SRLREMPMK-MYKLKNLQTLSHFVV 690 (1399)
Q Consensus 667 ~~l~~lp~~-i~~L~~L~~L~~~~~ 690 (1399)
|.++.+|.. +..+++|+.|+...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CccceeCHHHhccccCCCEEEeCCC
Confidence 999999987 888888888876443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=2.2e-09 Score=109.28 Aligned_cols=94 Identities=27% Similarity=0.380 Sum_probs=67.7
Q ss_pred ccccccccCCCCcccEEEecCCCCccc-CcccCCCCCCcEEeccCCcccccccc-ccCCCCCcEEEccCCCCCCCcCh-h
Q 040015 576 DRVPRDILPRLKCLRVLSFSACRITAL-PDSVGDLKHLRYLDLSRTAIKQLPDS-TGNLCNLQSIILLECYSLSKLPT-D 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L~~L~~L~L~~~~~~~~lP~-~ 652 (1399)
..+|..+ .++|++|+|++|.|+.+ |..|..+++|++|+|++|.|+.+|.. |.++++|++|+|++| .+..+|. .
T Consensus 22 ~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~ 97 (170)
T 3g39_A 22 ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGA 97 (170)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHH
Confidence 3455544 26777888888888777 66677888888888888888877664 577888888888887 5555655 4
Q ss_pred hccCCCCCEEEccCCcccccC
Q 040015 653 LGNLTGLRHLRMSGSRLREMP 673 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~lp 673 (1399)
|.++++|++|++++|.+...+
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTTB
T ss_pred hcCCCCCCEEEeCCCCCCCCc
Confidence 777888888888887765443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=2.3e-09 Score=110.38 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=94.3
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccC-cccCCCCCCcEEeccCCcccccccc-ccCC
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALP-DSVGDLKHLRYLDLSRTAIKQLPDS-TGNL 632 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~~-i~~L 632 (1399)
+.|+.|.+.++.. ..++...|..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.|+.+|.. +.++
T Consensus 28 ~~l~~L~l~~n~l--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESNKL--------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSSCC--------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCcc--------cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 5788888887653 4677788899999999999999999986 4579999999999999999998875 7899
Q ss_pred CCCcEEEccCCCCCCCcChh-hccCCCCCEEEccCCccccc
Q 040015 633 CNLQSIILLECYSLSKLPTD-LGNLTGLRHLRMSGSRLREM 672 (1399)
Q Consensus 633 ~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~l~~l 672 (1399)
++|++|++++| .+..+|.. +..+++|++|++++|.+...
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999999999 66777766 68899999999999987643
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.7e-09 Score=124.10 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCCCCCCCcc-eEEcCCCCCCCccc-cccCCCCCc
Q 040015 1299 PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGWFLPKNLS-SLYLERLPNLKSLP-NGLKNLKYL 1375 (1399)
Q Consensus 1299 ~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~~l~~l~-~~~~~l~~L 1375 (1399)
+++|+.|++.++ +++.++..+|.+|++|+++++.+| +..++ ..|..+++|+ .+++.+ .++.|+ ..|.+|++|
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 578999999863 588899999999999999999986 66665 4689999999 999998 689998 789999999
Q ss_pred CceeccCCCCCCCCCCCCCCC
Q 040015 1376 ETLEIWECDNLQTVPEEKPTT 1396 (1399)
Q Consensus 1376 ~~L~l~~c~~l~~lp~~~~~~ 1396 (1399)
+.++++++ +++.++...|..
T Consensus 300 ~~l~l~~n-~i~~I~~~aF~~ 319 (329)
T 3sb4_A 300 RYVLATGD-KITTLGDELFGN 319 (329)
T ss_dssp EEEEECSS-CCCEECTTTTCT
T ss_pred CEEEeCCC-ccCccchhhhcC
Confidence 99999775 799998887753
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=8.3e-10 Score=135.36 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=91.9
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCEEEccCC
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRHLRMSGS 667 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~ 667 (1399)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+| .|++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48999999999999997 99999999999999999999999999999999999999 677788 8999999999999999
Q ss_pred ccccc--CccccCCCCCCccCce
Q 040015 668 RLREM--PMKMYKLKNLQTLSHF 688 (1399)
Q Consensus 668 ~l~~l--p~~i~~L~~L~~L~~~ 688 (1399)
.++.+ |..++.+++|+.|+..
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCCCCcHHHhcCCCCCEEEec
Confidence 99988 8889999999988753
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=2.5e-08 Score=117.48 Aligned_cols=299 Identities=14% Similarity=0.145 Sum_probs=159.7
Q ss_pred cccCCCCCcceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhhC
Q 040015 1033 HSTGGHRSLTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFYE 1112 (1399)
Q Consensus 1033 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 1112 (1399)
..+.++++|+.+++..+ +..+....|.++++|+.+.+..+ +..+.. ..+..+..++........ ..-...|.+
T Consensus 88 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~-~aF~~~~~~~~~~~~~~~--~i~~~aF~~ 160 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGV-EAFKGCDFKEITIPEGVT--VIGDEAFAT 160 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECT-TTTTTCCCSEEECCTTCC--EECTTTTTT
T ss_pred hHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecc-eeeecccccccccCcccc--ccchhhhcc
Confidence 34555666666666432 55566666777777776666543 222211 122233222222111111 111245666
Q ss_pred CCCccEEEEecCCCCcccCC--CCCCCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc-
Q 040015 1113 LSTLKVLRISNCPSLVAFPE--MGLPSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL- 1189 (1399)
Q Consensus 1113 l~~L~~L~ls~c~~l~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~- 1189 (1399)
+++|+.+.+.+. +..++. +....+|+.+.+... ++.++...+. ++..|+.+.+.. ....+....+
T Consensus 161 c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~------~~~~L~~i~~~~--~~~~i~~~~~~ 228 (394)
T 4fs7_A 161 CESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA------ECILLENMEFPN--SLYYLGDFALS 228 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTT------TCTTCCBCCCCT--TCCEECTTTTT
T ss_pred cCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhc------cccccceeecCC--CceEeehhhcc
Confidence 777777777542 333332 222355555555432 3333333332 344444444332 1111211111
Q ss_pred cCCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccC
Q 040015 1190 SGTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFL 1269 (1399)
Q Consensus 1190 ~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 1269 (1399)
..+|+.+.+.. .+..+... +|.++..|+.+.+..+. .......+..++.++.+.+.... +
T Consensus 229 ~~~l~~i~ip~--~~~~i~~~-------------~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i 288 (394)
T 4fs7_A 229 KTGVKNIIIPD--SFTELGKS-------------VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----V 288 (394)
T ss_dssp TCCCCEEEECT--TCCEECSS-------------TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE----E
T ss_pred cCCCceEEECC--Cceecccc-------------cccccccceeEEcCCCc-ceeeccccccccccceeccCcee----e
Confidence 13455555542 22333222 26777788888776543 23334456667777776665421 2
Q ss_pred c-cccccCCCcceEeecCCCCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCC
Q 040015 1270 P-NGMYILTSLQEFSIHGCSSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGW 1345 (1399)
Q Consensus 1270 p-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 1345 (1399)
+ ..+..+++|+.+.+.+ .++.++..++ ..+|+.+.+. ++++.+...+|.+|++|+.+++..+ +..++ ..|
T Consensus 289 ~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF 362 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF 362 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTB
T ss_pred cccccccccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECcc--ccEehHHHh
Confidence 2 3455678888888754 4666766555 3577777774 2466777778888888888888653 44444 467
Q ss_pred CCCCCcceEEcCCCCCCCccccccCCCCCcCce
Q 040015 1346 FLPKNLSSLYLERLPNLKSLPNGLKNLKYLETL 1378 (1399)
Q Consensus 1346 ~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 1378 (1399)
..+++|+.+++.. .++.+...+.++++|+++
T Consensus 363 ~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred hCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 7888888888865 355565567777777665
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=1.9e-09 Score=109.82 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=87.5
Q ss_pred cccEEEecCCCCcccCcccCCCCCCcEEeccCCccccc-cccccCCCCCcEEEccCCCCCCCcChh-hccCCCCCEEEcc
Q 040015 588 CLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQL-PDSTGNLCNLQSIILLECYSLSKLPTD-LGNLTGLRHLRMS 665 (1399)
Q Consensus 588 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~l-P~~i~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~ 665 (1399)
..+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|.. |.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 35789999999999998774 8999999999999988 567999999999999999 66677765 7899999999999
Q ss_pred CCcccccCcc-ccCCCCCCccCceee
Q 040015 666 GSRLREMPMK-MYKLKNLQTLSHFVV 690 (1399)
Q Consensus 666 ~~~l~~lp~~-i~~L~~L~~L~~~~~ 690 (1399)
+|.++.+|.. +..+++|+.|+...+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 9999999886 788888888876443
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=3.2e-08 Score=115.72 Aligned_cols=249 Identities=11% Similarity=0.204 Sum_probs=113.5
Q ss_pred cccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccc-hhhhhCCCCccEEEEecCCCCccc
Q 040015 1052 LDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKEL-PEKFYELSTLKVLRISNCPSLVAF 1130 (1399)
Q Consensus 1052 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l-~~~~~~l~~L~~L~ls~c~~l~~~ 1130 (1399)
++.+....|.++ +|+.+.+..+ ++.+... .|.+ .+|+.+.+.+ . ++.+ +..|.++++|+.+++++ +.++.+
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~-aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~-n~l~~I 195 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDM-AFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSK-TKITKL 195 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT--CCEECTT-TTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTT-SCCSEE
T ss_pred cCEehHhhcccC-CccEEEeCCC--ccEECHH-hcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCC-CcceEe
Confidence 344444445553 4555555543 3333221 2223 2455555553 2 2233 24556666666666655 234444
Q ss_pred CCCCC-CCCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCccccc-CCCCeEeeecCCCCCccC
Q 040015 1131 PEMGL-PSTLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKLS-GTLKVLEIENCGNLQSLP 1208 (1399)
Q Consensus 1131 ~~~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~c~~l~~l~ 1208 (1399)
+...+ ..+|+.+.+.+ .++.++...|. ++++|+.+.+.+ +++.++...|. .+|+.+.+. +.++.++
T Consensus 196 ~~~aF~~~~L~~l~lp~--~l~~I~~~aF~------~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp--~~i~~I~ 263 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPV--TLKEIGSQAFL------KTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLP--NGVTNIA 263 (401)
T ss_dssp CTTTTTTCCCSEEECCT--TCCEECTTTTT------TCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEE--TTCCEEC
T ss_pred chhhEeecccCEEEeCC--chheehhhHhh------CCCCCCEEecCC--CccCccccccccCCccEEEeC--CCccEEC
Confidence 43211 24555555542 24444444433 455566666543 34444443332 356666663 2344444
Q ss_pred ccccccccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccC-ccccccCCCcceEeecCC
Q 040015 1209 EQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFL-PNGMYILTSLQEFSIHGC 1287 (1399)
Q Consensus 1209 ~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c 1287 (1399)
... |.+|++|+.+.+.++.... .....+ +..+.+|++|+.+.+.+
T Consensus 264 ~~a-------------F~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 264 SRA-------------FYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TTT-------------TTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCCT-
T ss_pred hhH-------------hhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeCC-
Confidence 333 5666777777666544320 000111 12333444444444432
Q ss_pred CCCccCCCCCC--CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccCCCCCCC-CCcceEEcCC
Q 040015 1288 SSLMSFPEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFPKGWFLP-KNLSSLYLER 1358 (1399)
Q Consensus 1288 ~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~ 1358 (1399)
.++.++...| +.+|+.+.+. .+++.+...+|.++ +|+.+++.+|......+..|..+ .+++.|++-.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp--~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIP--ANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEEC--TTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -ceEEEhhhhhcCCCCccEEEEC--ccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 2333433322 1334444442 12344444556666 66666666654333333334333 3555565554
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=7.2e-08 Score=112.68 Aligned_cols=191 Identities=11% Similarity=0.142 Sum_probs=123.1
Q ss_pred ccCCcceEEecCCCCCCccCccccc-CCCCeEeeecCCCCCccCccccccccccceeccccCCCCCCceEeecCCCCCcc
Q 040015 1166 DAFLLEYLVIEGCPALVSLPRDKLS-GTLKVLEIENCGNLQSLPEQMICSSLENLKVAGCLHNLAFLDHLEIDDCPLLQS 1244 (1399)
Q Consensus 1166 ~~~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~ 1244 (1399)
++++|+.+++.+ +.++.++...|. .+|+.+.+.. .++.++... |.++++|+.+++..+ +..
T Consensus 178 ~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~a-------------F~~~~~L~~l~l~~~--l~~ 239 (401)
T 4fdw_A 178 YCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQA-------------FLKTSQLKTIEIPEN--VST 239 (401)
T ss_dssp TCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTT-------------TTTCTTCCCEECCTT--CCE
T ss_pred CcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhH-------------hhCCCCCCEEecCCC--ccC
Confidence 455566666654 345555544332 4677777753 366665543 788888888888764 445
Q ss_pred cCCCCCCCCCccceecccccCCccCc-cccccCCCcceEeecCCCC----CccCCCCCC--CCCcceEEeccCCCCCCCc
Q 040015 1245 FPEPCLPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSS----LMSFPEGGL--PPNLISLSILDCENLKPSS 1317 (1399)
Q Consensus 1245 ~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~----l~~l~~~~~--~~~L~~L~l~~c~~l~~~~ 1317 (1399)
++.....-.+|+.+.+.+ .++.++ ..|.+|++|+.+.+.++.. +..++...| +++|+.+.+. ++++.+.
T Consensus 240 I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~ 315 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILG 315 (401)
T ss_dssp ECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEEC
T ss_pred ccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEh
Confidence 544333337888888853 356664 4567889999999877321 124555544 4678888876 3577777
Q ss_pred ccccccCCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCCCCccc-cccCCCC-CcCceeccC
Q 040015 1318 EWGLHRLTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPNLKSLP-NGLKNLK-YLETLEIWE 1382 (1399)
Q Consensus 1318 ~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~-~L~~L~l~~ 1382 (1399)
..+|.+|++|+.++|..+ +..++ ..|..+ +|+.++++++ .+..++ ..+..++ .++.|++-.
T Consensus 316 ~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 888888888888888543 44443 467777 8888888884 466665 5566664 566776644
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=2.3e-11 Score=128.12 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=81.8
Q ss_pred cccccCccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccc
Q 040015 550 AFNEAECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDST 629 (1399)
Q Consensus 550 ~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i 629 (1399)
.+..+++|+.|.+.++.. ..+| .|.++++|++|+|++|.++.+|..+..+++|++|+|++|.+..+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l--------~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI--------EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEE--------SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCCC--------cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 355666777777665431 2244 456677777777777777777766666677777777777777766 57
Q ss_pred cCCCCCcEEEccCCCCCCCcCh--hhccCCCCCEEEccCCcccccCcc-----------ccCCCCCCccC
Q 040015 630 GNLCNLQSIILLECYSLSKLPT--DLGNLTGLRHLRMSGSRLREMPMK-----------MYKLKNLQTLS 686 (1399)
Q Consensus 630 ~~L~~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~l~~lp~~-----------i~~L~~L~~L~ 686 (1399)
+++++|++|++++| .+..+|. .+..+++|++|++++|.+...++. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777777777777 5555543 567777777777777766543222 55566666665
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=5.9e-09 Score=119.52 Aligned_cols=268 Identities=15% Similarity=0.121 Sum_probs=145.1
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ... ..+++..+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~--~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA--RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH--HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHc--cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH---
Confidence 4689999999998888863210 0012356789999999999999999873 222 22344443322222111
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC------------------CCCcEE
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG------------------ARGSKI 313 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~i 313 (1399)
..+... ..+..+|++|++..-.....+.+...+... ..+.++
T Consensus 82 -------------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 82 -------------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -------------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -------------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111110 124568888888654333333333222211 023456
Q ss_pred EEEcCChh-hHHhc-Cc-cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHHhcC
Q 040015 314 IITTRDSS-IAASM-GT-VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIILRSR 390 (1399)
Q Consensus 314 lvTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 390 (1399)
|.||.... +...+ .. ...+.+.+++.++..+++.+.+..... .-..+..+.|++.++|.|..+..+...+...
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 66665432 21111 11 257899999999999998887643321 1223567889999999998877665554321
Q ss_pred --------CChHHHHHHHhhhccCCCCCcchHHHHHHHhhcCCChhhhhhhhhhc-cCCCC----------cccchHHHH
Q 040015 391 --------EDKGEWYDMLNRNIWDLPHDESSILQTLGLSYHHLPPHLKQCFAYCS-VFPAG----------YEFDKEKLV 451 (1399)
Q Consensus 391 --------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li 451 (1399)
-+.+....++... ...+..++...+..+..+. .|..+ ..+++..+.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 1233333333321 1122334444444443332 12111 012222222
Q ss_pred ----HHHHHhCCccccccchhHHHHHHHHHH-HHHhcccccc
Q 040015 452 ----LLWMAEGFVQQSNAKKKLEEVGREYFH-ELVSRSFFRQ 488 (1399)
Q Consensus 452 ----~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 488 (1399)
.+-+..|+|.....+....+.|.+||+ ++++|+++|+
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 235668888766566677788999998 8999999885
No 158
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=2.6e-11 Score=127.64 Aligned_cols=103 Identities=25% Similarity=0.368 Sum_probs=93.0
Q ss_pred ccCCCCcccEEEecCCCCcccCcccCCCCCCcEEeccCCccccccccccCCCCCcEEEccCCCCCCCcChhhccCCCCCE
Q 040015 582 ILPRLKCLRVLSFSACRITALPDSVGDLKHLRYLDLSRTAIKQLPDSTGNLCNLQSIILLECYSLSKLPTDLGNLTGLRH 661 (1399)
Q Consensus 582 ~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 661 (1399)
.|..+++|++|+|++|.++.+| .+..+++|++|+|++|.+..+|..+..+++|++|++++| .+..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5788999999999999999999 899999999999999999999998999999999999999 777787 6999999999
Q ss_pred EEccCCcccccCc--cccCCCCCCccCc
Q 040015 662 LRMSGSRLREMPM--KMYKLKNLQTLSH 687 (1399)
Q Consensus 662 L~l~~~~l~~lp~--~i~~L~~L~~L~~ 687 (1399)
|++++|.++.+|. .+..+++|++|+.
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 9999999988765 5778888887764
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.3e-08 Score=116.83 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=116.7
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++||+..++.+..++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+++..+.....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------ 86 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI------ 86 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH------
T ss_pred HHHHCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh------
Confidence 468999999999999997543 23388999999999999999987421 1111 12344443332222
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHh-------cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-h
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKL-------AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-I 322 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l-------~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 322 (1399)
+.+...+.... .+++.++|+||++.-....++.+...+.....++++|+||+... +
T Consensus 87 ----------------~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 87 ----------------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 150 (323)
T ss_dssp ----------------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ----------------HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhc
Confidence 12222222221 34588999999977555566666666655556778888886643 2
Q ss_pred HHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhH-HHHHHHH
Q 040015 323 AAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLA-VKRMGII 386 (1399)
Q Consensus 323 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa-i~~~~~~ 386 (1399)
... ......+++.+++.++..+++...+...+. .-..+.+..|++.++|.|.. +..+...
T Consensus 151 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 151 IEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV----KYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 121 123358999999999999999887643221 11235578899999999954 4444433
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.73 E-value=2.2e-07 Score=109.31 Aligned_cols=145 Identities=15% Similarity=0.109 Sum_probs=100.3
Q ss_pred cCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccC-ccccccCCCcceEeecCCCCCccCCCCCC--CCC
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFL-PNGMYILTSLQEFSIHGCSSLMSFPEGGL--PPN 1301 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~ 1301 (1399)
+.....|+.+.+.... ...-...+..+.+|+.+.+..+ ...+ ...+..++.|+.+..... .++...+ ..+
T Consensus 226 ~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~ 298 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSS 298 (394)
T ss_dssp TTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTT
T ss_pred hcccCCCceEEECCCc-eecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccc
Confidence 3445677777775432 2222345666777888877653 2223 344567777887776542 2343333 468
Q ss_pred cceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCCCCccc-cccCCCCCcCcee
Q 040015 1302 LISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPNLKSLP-NGLKNLKYLETLE 1379 (1399)
Q Consensus 1302 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~ 1379 (1399)
|+.+.+.+ +++.+...+|.+|++|+.++|.. .+..++ ..|..+++|+.+.+.. .++.|+ ..|.+|++|+.++
T Consensus 299 L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 299 LTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEE
T ss_pred cccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEE
Confidence 88888853 57788888999999999999964 355554 4788999999999987 388887 6889999999998
Q ss_pred ccC
Q 040015 1380 IWE 1382 (1399)
Q Consensus 1380 l~~ 1382 (1399)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 864
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=2.6e-08 Score=115.31 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=40.4
Q ss_pred EecCC-CCcccCcccCCCCCCcEEeccC-Ccccccc-ccccCCCCCcEEEccCCCCCCCc-ChhhccCCCCCEEEccCCc
Q 040015 593 SFSAC-RITALPDSVGDLKHLRYLDLSR-TAIKQLP-DSTGNLCNLQSIILLECYSLSKL-PTDLGNLTGLRHLRMSGSR 668 (1399)
Q Consensus 593 ~Ls~~-~i~~lp~~i~~L~~L~~L~Ls~-n~i~~lP-~~i~~L~~L~~L~L~~~~~~~~l-P~~i~~L~~L~~L~l~~~~ 668 (1399)
+++++ +++.+|. |..+.+|++|+|++ |.|..+| ..|++|.+|++|+|++| .+..+ |..|++|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 4555555 55555555555553 5555444 24555555555555555 23322 2334555555555555555
Q ss_pred ccccCcc
Q 040015 669 LREMPMK 675 (1399)
Q Consensus 669 l~~lp~~ 675 (1399)
++.+|..
T Consensus 92 l~~~~~~ 98 (347)
T 2ifg_A 92 LESLSWK 98 (347)
T ss_dssp CSCCCST
T ss_pred cceeCHH
Confidence 5555544
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.1e-07 Score=109.11 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=116.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 250 (1399)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~----- 91 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS-------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN----- 91 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC-------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-----
Confidence 458999999999999997653 33488999999999999999997421 1111 123334333211111
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHH-----h-cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-hH
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREK-----L-AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-IA 323 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~-----l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 323 (1399)
.+...+.+. + .+++.++|+||++.-..+.++.+...+.....++++|+||.... +.
T Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 154 (327)
T 1iqp_A 92 -----------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 154 (327)
T ss_dssp -----------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred -----------------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccC
Confidence 011111111 1 25678999999977655566667666655556788888887643 11
Q ss_pred Hhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH
Q 040015 324 ASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL 387 (1399)
Q Consensus 324 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 387 (1399)
..+ .....+.+.+++.++...++...+...+. .-..+..+.|++.++|.|..+..+...+
T Consensus 155 ~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 155 EPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 111 12247899999999999999887643221 1223567889999999998765554443
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.2e-07 Score=102.77 Aligned_cols=173 Identities=10% Similarity=0.032 Sum_probs=108.0
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccc------cccceEEEEeCCccCHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG------RFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~ 246 (1399)
.+.|||+|+++|...|...- ..+..+.+.|+|++|+|||++|+.|++...... .| ..++|++....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i---~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL---MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 47899999999998887542 123467889999999999999999998532111 12 356777777788889
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHH--hcCcceEEEecCCcCCCcchhhhhhcccCC-CCCCc--EEEEEcCChh
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREK--LAGKKFLLVLDDVWSRRNDDWDLICSPLKA-GARGS--KIIITTRDSS 321 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~--l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs--~ilvTtR~~~ 321 (1399)
++..|++++.+.........+.+...+... -.++++++|||+++.-. ..+.+...+.+ ....+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999765322222234444444332 24567999999996542 22223322221 11223 2344443322
Q ss_pred h---------HHhcCccceEeCCCCCccchHHHHHHhhhc
Q 040015 322 I---------AASMGTVAAHHLECLAFEDCSSIFMNQAFE 352 (1399)
Q Consensus 322 v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 352 (1399)
. ...++ ...+.+++.+.++-.+++.+++-.
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 11221 246899999999999999887643
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.5e-07 Score=109.01 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred ccccccccCCCCcccEEEecC-CCCcccC-cccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCCCCCCCcChh
Q 040015 576 DRVPRDILPRLKCLRVLSFSA-CRITALP-DSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLECYSLSKLPTD 652 (1399)
Q Consensus 576 ~~~~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~~~~~~lP~~ 652 (1399)
..+|. +..+.+|++|+|++ |.|+.+| ..|++|.+|++|+|++|.|..+|. .|++|++|++|+|++| .+..+|..
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 45777 78899999999996 9999986 679999999999999999998865 7899999999999999 77778766
Q ss_pred hccCCCCCEEEccCCcccc
Q 040015 653 LGNLTGLRHLRMSGSRLRE 671 (1399)
Q Consensus 653 i~~L~~L~~L~l~~~~l~~ 671 (1399)
+.....|++|++.+|.+..
T Consensus 99 ~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCCCCEEECCSSCCCC
T ss_pred HcccCCceEEEeeCCCccC
Confidence 4443449999999998764
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.45 E-value=1e-06 Score=100.54 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=113.6
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccc-cceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF-DLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 250 (1399)
.+++|++..++.+..++.... .+.+.++|++|+|||++|+.+++... ...+ ...+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC-------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT------
T ss_pred HHHhCCHHHHHHHHHHHhCCC-------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh------
Confidence 458999999999998886532 33488999999999999999987321 1111 11233443331110
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHH--h-cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-hHHh-
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREK--L-AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-IAAS- 325 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~--l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~- 325 (1399)
.. ........... + .+++-++|+|+++.-..+..+.+...+.....+.++|+||.... +...
T Consensus 83 ------------~~-~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 83 ------------DV-VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp ------------TT-SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred ------------HH-HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 00 11111111111 1 25678999999976554556667666665556778888876543 2221
Q ss_pred cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 326 MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 326 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
......+.+.+++.++..+++.+.+...+. .-..+....|++.++|.+..+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123358999999999999998877643221 1223457788999999998655443
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=1.6e-05 Score=93.46 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=51.2
Q ss_pred ccCCCCCcceeeeccc--CCcccccccccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccchhhhh
Q 040015 1034 STGGHRSLTYMRICQI--SKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELPEKFY 1111 (1399)
Q Consensus 1034 ~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 1111 (1399)
.|.++++|+.+.+..+ ..+..+....|.++.+|+.+.+..+ ++.+.. ..+..+.+|+.+.+.... ...-...+.
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~-~aF~~c~~L~~i~lp~~~-~~I~~~~F~ 157 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDS-EAFHHCEELDTVTIPEGV-TSVADGMFS 157 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECT-TTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehh-hhhhhhccccccccccee-eeeccccee
Confidence 3444555555555443 2345555566666666666655443 222222 134456666666665332 112223456
Q ss_pred CCCCccEEEEecCCCCcccCCCCC-CCCcceEEEc
Q 040015 1112 ELSTLKVLRISNCPSLVAFPEMGL-PSTLVGLEIR 1145 (1399)
Q Consensus 1112 ~l~~L~~L~ls~c~~l~~~~~~~~-~~~L~~L~l~ 1145 (1399)
.+.+|+.+.+.. .++.+....+ ...|+.+.+.
T Consensus 158 ~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 158 YCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCCCSEEEEC
T ss_pred cccccccccccc--eeeEeccccccccceeEEEEC
Confidence 666666666653 2343332221 1345555543
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.44 E-value=1.2e-06 Score=102.47 Aligned_cols=196 Identities=16% Similarity=0.178 Sum_probs=114.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++||+..++.+..++.... ....+.|+|++|+||||+|+.+++...-...+. ...+........+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHH
Confidence 358999999999999997543 234778999999999999999987422111110 0000000011111
Q ss_pred HHHc-------cCCCCCCCcchHHHHHHHHHH-hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-h
Q 040015 252 LKSV-------TSKPADVDDDLNLLQVCLREK-LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-I 322 (1399)
Q Consensus 252 ~~~l-------~~~~~~~~~~~~~l~~~l~~~-l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 322 (1399)
...- ........+....+...+... ..+++.++|+||++.-....++.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1100 000001111122222221111 135678999999976555566666666655555677777776433 2
Q ss_pred HHh-cCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 323 AAS-MGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 323 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
... ......+++.+++.++..+++.+.+...+. .-..+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 221 223368999999999999999876533221 1123457789999999998876654
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.38 E-value=9.8e-06 Score=95.20 Aligned_cols=124 Identities=11% Similarity=0.153 Sum_probs=64.3
Q ss_pred CCCCCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccCCCCCCC--CCcceEEeccCCCCCCCccccccc
Q 040015 1247 EPCLPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSFPEGGLP--PNLISLSILDCENLKPSSEWGLHR 1323 (1399)
Q Consensus 1247 ~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~c~~l~~~~~~~l~~ 1323 (1399)
..|..+++|+.+.+.+. +..+. ..+.++++|+.+.+.. .++.++...|. .+|+.+.+.. +++.+...+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred ceeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 34556666666666542 22332 3345667777776642 45666655443 4666666642 355566666667
Q ss_pred CCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCCCCccccccCCCCCcCceecc
Q 040015 1324 LTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPNLKSLPNGLKNLKYLETLEIW 1381 (1399)
Q Consensus 1324 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 1381 (1399)
|++|+.+.|.. .+..+. ..|.++++|+.+++.++. ..+ ..+..+.+|+.+.+.
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HHH-HTCBCCCCC------
T ss_pred CCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeC
Confidence 77777776643 233343 345666666666666621 112 234455555555543
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.31 E-value=8.4e-07 Score=96.57 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=102.1
Q ss_pred Cccccc---hhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGR---ENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
..|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++. .......+.|+.++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----
Confidence 346663 35566666665432 2467889999999999999999874 2222345667766442210
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcch--hhhhhcccCCC-CCC-cEEEEEcCChh---
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDD--WDLICSPLKAG-ARG-SKIIITTRDSS--- 321 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~--- 321 (1399)
+ .... +.+ .++.+||+||++...... .+.+...+... ..+ .+||+||+...
T Consensus 95 ------~-------~~~~--------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 ------S-------TALL--------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ------C-------GGGG--------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ------H-------HHHH--------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 0000 011 346799999996643333 33333332211 122 24777776322
Q ss_pred ------hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 322 ------IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 322 ------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
+...+.....+.+++++.++..+++...+..... .-..+....|++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 2222222268999999999999999887643221 1224567789999999987766543
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=1.4e-06 Score=91.11 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++||+++++++.+++.... .+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT-------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999996542 456789999999999999999874
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.22 E-value=1.8e-05 Score=90.76 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=104.6
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+++. ....| +.+.++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~--~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~-------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK--RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK-------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH--TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS--------
T ss_pred HHhCChHHHHHHHHHHHHHHHh--cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc--------
Confidence 4689999999999998875310 0123456789999999999999999873 22222 2333322111
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC------------------CCcEE
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA------------------RGSKI 313 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 313 (1399)
.......+.. ..+..+|++|++..-.......+...+.... ++..+
T Consensus 94 --------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 94 --------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111111111 2355688888886544333444433332211 12456
Q ss_pred EEEcCChh-hHHhc-C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 314 IITTRDSS-IAASM-G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 314 lvTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
|.+|.... +...+ . ....+.+.+++.++...++.+.+..... .-..+..+.|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66665432 11111 1 2257999999999999999877643221 1224567888899999996555443
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6.2e-06 Score=95.53 Aligned_cols=194 Identities=10% Similarity=0.057 Sum_probs=112.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccccc-ceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD-LKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++|+++.++.+..++.... .+.+.|+|++|+||||+|+.+++.......+. ..+.+..+....... +++
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHhhCCHHHHHHHHHHHhcCC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 468999999999999986543 22388999999999999999987421111121 233344433222222 222
Q ss_pred HHHHccCC-CCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-hHHhc-C
Q 040015 251 ILKSVTSK-PADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-IAASM-G 327 (1399)
Q Consensus 251 i~~~l~~~-~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~ 327 (1399)
.+...... ...... . .....-.+++-+|++|++..-.....+.+...+.......++|++|.... +...+ .
T Consensus 109 ~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 109 KVKNFARLTVSKPSK-H-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHHHHHSCCCCCCT-T-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHhhhcccccch-h-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 22211110 000000 0 00001123456999999966544455556555554445667777775432 21111 1
Q ss_pred ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 328 TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 328 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
....+.+.+++.++....+.+.+..... .-..+..+.|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENV----KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2247899999999999998887643221 112456788999999999875544
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.14 E-value=0.00022 Score=83.26 Aligned_cols=303 Identities=12% Similarity=0.137 Sum_probs=156.1
Q ss_pred ccccCCccceeeeccchhhhhhhhhhcccccccccEEEeecCCCcccch-hhhhCCCCccEEEEecCCCCcccCCCCCC-
Q 040015 1059 YFQHFTALEELQISHLAELMTLSNKIGLRSLLSLQRLEISECPYFKELP-EKFYELSTLKVLRISNCPSLVAFPEMGLP- 1136 (1399)
Q Consensus 1059 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~ls~c~~l~~~~~~~~~- 1136 (1399)
++....+|+.+.+... ++.+... .|.++.+|+.+.|..+ ++.++ ..|.++ +|+.+.+.. .++.++...+.
T Consensus 41 ~~~~~~~i~~v~ip~~--vt~Ig~~-aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG--ITSIGEA-NFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECTT--EEEECTT-TTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccCCEEEEeCCC--ccChHHH-HhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceecc
Confidence 4666778888888753 5555442 4668888998888654 44444 456655 677777653 35555533222
Q ss_pred CCcceEEEcCCCccccchhhhccccccCcccCCcceEEecCCCCCCccCcccc--cCCCCeEeeecCCCCCccCcccccc
Q 040015 1137 STLVGLEIRSCEALQFLPEKMMHESQKNKDAFLLEYLVIEGCPALVSLPRDKL--SGTLKVLEIENCGNLQSLPEQMICS 1214 (1399)
Q Consensus 1137 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~l~~~~~~~ 1214 (1399)
.+|+.+.+.+ .+..+....+. ..+|..+.+-. .++.+....+ ..+++...+................
T Consensus 113 ~~L~~i~lp~--~~~~i~~~~F~-------~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T 4h09_A 113 TDLDDFEFPG--ATTEIGNYIFY-------NSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN 181 (379)
T ss_dssp CCCSEEECCT--TCCEECTTTTT-------TCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE
T ss_pred CCcccccCCC--ccccccccccc-------cceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecc
Confidence 4677777654 23333333332 11344444322 2333332222 1245555444322211110000000
Q ss_pred ccccceeccccCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccC
Q 040015 1215 SLENLKVAGCLHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSF 1293 (1399)
Q Consensus 1215 ~L~~L~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l 1293 (1399)
... .+...+..+..+..+.+.... .......+..+.+|+.+.+... +..+. ..+.++++|+.+.+.. .++.+
T Consensus 182 ~~~--~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~--~v~~I 254 (379)
T 4h09_A 182 KNK--TILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPK--NVTSI 254 (379)
T ss_dssp TTS--SEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECT--TCCEE
T ss_pred ccc--ceeccccccccccccccccce-eEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCC--CccEe
Confidence 000 001113444455555443322 1122234445566666665432 33332 3345667777777754 35555
Q ss_pred CCCCC--CCCcceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCCCCccc-ccc
Q 040015 1294 PEGGL--PPNLISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPNLKSLP-NGL 1369 (1399)
Q Consensus 1294 ~~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~ 1369 (1399)
....+ ..+|+.+.+. .+++.+....|..|++|+.+.+.++ .+..++ ..|..+++|+.+.|.. .++.|+ ..|
T Consensus 255 ~~~aF~~~~~l~~i~l~--~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF 329 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFY--AKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAF 329 (379)
T ss_dssp CTTTTTTCTTCCEEEEC--CCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred Cccccceeehhcccccc--ccceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHh
Confidence 55433 3466666663 3456666667777777777777653 333333 4567777777777765 366776 567
Q ss_pred CCCCCcCceeccCCCCCCCCCCCCC
Q 040015 1370 KNLKYLETLEIWECDNLQTVPEEKP 1394 (1399)
Q Consensus 1370 ~~l~~L~~L~l~~c~~l~~lp~~~~ 1394 (1399)
.+|++|+.+.+.. .++.+.+..|
T Consensus 330 ~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 330 KNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTCTTCCCCCCCT--TCCEECTTTT
T ss_pred hCCCCCCEEEECC--ccCEEchhHh
Confidence 7777777777643 3555544444
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.08 E-value=2.8e-05 Score=91.41 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=103.8
Q ss_pred CccccchhHH---HHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDK---NAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
.++||.+..+ ..+...+.... ...+.|+|++|+||||+|+.+++. ....| +.++.......-.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~-------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH-------LHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC-------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC-------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHH
Confidence 4689998888 77778786553 467899999999999999999983 22222 2222211111111
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHH-HHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEE-EcCChh--hH-
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLR-EKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIII-TTRDSS--IA- 323 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~-~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v~- 323 (1399)
++ ...... ....+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +.
T Consensus 92 r~------------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 92 RE------------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNS 151 (447)
T ss_dssp HH------------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCH
T ss_pred HH------------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCH
Confidence 11 111111 112467889999999765544555555555432 233443 555532 21
Q ss_pred HhcCccceEeCCCCCccchHHHHHHhhhcCCCC---CCCccHHHHHHHHHHHccCchhHHHHHH
Q 040015 324 ASMGTVAAHHLECLAFEDCSSIFMNQAFENRNT---GISPDLETIGAEIVNKCEGLLLAVKRMG 384 (1399)
Q Consensus 324 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~~~~ 384 (1399)
.......++.+++++.++...++.+.+...... ....-..+..+.|++.++|.+-.+..+-
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 122334588999999999999988876431110 1111234567888889999887655443
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.2e-06 Score=87.05 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCccceecccccCCccCccccccCCCcceEeecCCCCCccCCCCCC------CCCcceEEeccCCCCCCCcccccccCCC
Q 040015 1253 SMLRYARISNCQNLKFLPNGMYILTSLQEFSIHGCSSLMSFPEGGL------PPNLISLSILDCENLKPSSEWGLHRLTC 1326 (1399)
Q Consensus 1253 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~------~~~L~~L~l~~c~~l~~~~~~~l~~l~~ 1326 (1399)
.+|+.|++++|.....--..+..+++|+.|+|++|..+++-....+ .++|+.|++++|+++++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3466666666652111112234677777777777776654221111 2357777777777776555555666677
Q ss_pred ccEEEEcCCCCcc
Q 040015 1327 LADFSFGGCQGLV 1339 (1399)
Q Consensus 1327 L~~L~l~~~~~~~ 1339 (1399)
|++|+|++|..++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777766554
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.05 E-value=2.3e-05 Score=87.40 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred CCccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
-.+++|.+..+++|.+++...-.. .+-...+.+.|+|++|+|||++|+.+++. ....| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH-
Confidence 356899999999999888542000 00012456889999999999999999873 22222 2233222111
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC-----------Ccchhhhh---hcccC--CCC
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-----------RNDDWDLI---CSPLK--AGA 308 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-----------~~~~~~~l---~~~l~--~~~ 308 (1399)
. ........+...+......++.+|+|||++.- .......+ ...+. ...
T Consensus 90 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 01111222233333333456689999999531 00111122 22111 122
Q ss_pred CCcEEEEEcCChhhHH-hc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccC-chhHHHH
Q 040015 309 RGSKIIITTRDSSIAA-SM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEG-LLLAVKR 382 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 382 (1399)
.+..||.||....... .. .-...+.++..+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567888887543211 11 11247889999999999999887643321 11122 4567777777 4544443
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.03 E-value=5.3e-05 Score=88.12 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=106.6
Q ss_pred CccccchhHHHH---HHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe----CCccCH
Q 040015 172 SCVYGRENDKNA---IVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV----SDQFDV 244 (1399)
Q Consensus 172 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~ 244 (1399)
..+||++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++... ... ..+.+.. +.....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~-----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK-----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSC-CEEEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccC-Ccccccchhhhhcccch
Confidence 469999988776 455554332 2246788999999999999999997432 111 1122221 112233
Q ss_pred HHHHHHHHHHccCC-----------------------------CCCCCcchHHHHHHHHHHh-----cCc----ceEEEe
Q 040015 245 LRVTTTILKSVTSK-----------------------------PADVDDDLNLLQVCLREKL-----AGK----KFLLVL 286 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~-----------------------------~~~~~~~~~~l~~~l~~~l-----~~~----r~Llvl 286 (1399)
.+.+.+......+. ..........+...+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 33443333331110 0000000222222222221 233 359999
Q ss_pred cCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC-------------hhhH-HhcCccceEeCCCCCccchHHHHHHhhhc
Q 040015 287 DDVWSRRNDDWDLICSPLKAGARGSKIIITTRD-------------SSIA-ASMGTVAAHHLECLAFEDCSSIFMNQAFE 352 (1399)
Q Consensus 287 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 352 (1399)
|++..-..+..+.+...+...... .++++|.. ..+. ........+.+++++.++..+++.+.+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999765555555565555443333 34444431 1111 11122245899999999999999887654
Q ss_pred CCCCCCCccHHHHHHHHHHHcc-CchhHHHHH
Q 040015 353 NRNTGISPDLETIGAEIVNKCE-GLLLAVKRM 383 (1399)
Q Consensus 353 ~~~~~~~~~~~~~~~~i~~~~~-g~PLai~~~ 383 (1399)
... .-..+..+.|++.+. |.|-.+..+
T Consensus 275 ~~~----~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 275 EDV----EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TTC----CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCC----CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 321 122456788888887 877655443
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.03 E-value=2.5e-05 Score=92.13 Aligned_cols=181 Identities=19% Similarity=0.140 Sum_probs=105.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccc--cceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF--DLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
...+.|+|++|+||||||+.+++. ....+ ..+++++.. .+..++...+.... .. .+.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~------~~----~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEGK------LN----EFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC------HH----HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHccc------HH----HHHHHh
Confidence 567899999999999999999983 32333 223455433 23344444443210 11 223333
Q ss_pred cCcceEEEecCCcCCCc--chhhhhhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHH
Q 040015 278 AGKKFLLVLDDVWSRRN--DDWDLICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSI 345 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 345 (1399)
..+.-+|++||++.-.. ...+.+...+.. ...|..||+||... .+...+....++.+++++.++-.++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 43677999999965432 223333333321 13467888888762 2233333346789999999999999
Q ss_pred HHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHHHHHH------hcC-CChHHHHHHHhh
Q 040015 346 FMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRMGIIL------RSR-EDKGEWYDMLNR 402 (1399)
Q Consensus 346 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l------~~~-~~~~~w~~~l~~ 402 (1399)
+.+.+..... ..++ ++...|++.++|.+-.+.-+...+ .++ -+.+.++.++..
T Consensus 272 L~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9887743221 1222 346778899999886554332221 111 245666666654
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=2.7e-05 Score=94.33 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=109.4
Q ss_pred CccccchhHHHHHHHHHhccC-----C-----CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 172 SCVYGRENDKNAIVELLMVED-----D-----SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~-----~-----~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
.+++|++..++++.+++.... . ..+.+..+.+.|+|++|+||||+|+.+++.. .+ .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 569999999999999997511 0 0001134688999999999999999999843 12 2344555544
Q ss_pred cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc---chhhhhhcccCCCCCCcEEEEEcC
Q 040015 242 FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN---DDWDLICSPLKAGARGSKIIITTR 318 (1399)
Q Consensus 242 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilvTtR 318 (1399)
.... .....+........ ...-...... .....+++.+||+|+++.-.. ..+..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 4332 22332222211110 0000000000 001135678999999965322 122334333322 2334555554
Q ss_pred Chh---hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch-hHHHHHHH
Q 040015 319 DSS---IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL-LAVKRMGI 385 (1399)
Q Consensus 319 ~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 385 (1399)
... +.........+.+++++.++..+.+...+...... ..+ +....|++.++|.+ -|+..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 322 22222233578999999999999888776543321 222 24678899999954 45555543
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=8.3e-06 Score=81.02 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=44.5
Q ss_pred cceeeecccCCcccccccccccCCccceeeeccchhhhhhhhhhccc---ccccccEEEeecCCCcccch-hhhhCCCCc
Q 040015 1041 LTYMRICQISKLDCLVEGYFQHFTALEELQISHLAELMTLSNKIGLR---SLLSLQRLEISECPYFKELP-EKFYELSTL 1116 (1399)
Q Consensus 1041 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~---~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L 1116 (1399)
|+.|++++|. ++...-..+.++++|+.|++++|..+++..-..... ..++|++|+|++|..++.-. ..+..+++|
T Consensus 63 L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred EeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4444444443 333222334556666666666666554432221111 12356666666666444321 334556666
Q ss_pred cEEEEecCCCCcc
Q 040015 1117 KVLRISNCPSLVA 1129 (1399)
Q Consensus 1117 ~~L~ls~c~~l~~ 1129 (1399)
++|+|++|+.+++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 6666666666554
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.3e-05 Score=92.63 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=106.9
Q ss_pred CccccchhHHHHHHHHH-hccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---cccc-cccc--------------
Q 040015 172 SCVYGRENDKNAIVELL-MVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVDG-RFDL-------------- 232 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~-~f~~-------------- 232 (1399)
.+++|++..++.+..++ .... ...+.|+|+.|+||||+|+.+++.. .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-------~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-------CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 45899999999988887 4332 2238999999999999999987621 1000 0110
Q ss_pred ------eEEEEeCCcc-CHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccC
Q 040015 233 ------KVWVCVSDQF-DVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLK 305 (1399)
Q Consensus 233 ------~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~ 305 (1399)
.+.+..+... ......+++++.+..... . .... .+. .+.+++-++|+|++..-+....+.+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-V----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-c----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0111111100 000012222222211100 0 0000 000 023356699999997755455555655554
Q ss_pred CCCCCcEEEEEcCCh-hhHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 306 AGARGSKIIITTRDS-SIAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 306 ~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
....+..+|++|.+. .+...+ .....+++++++.++..+.+.+.+...+. ..+ ..+....|++.++|.+-.+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 444567787777653 222222 23368999999999999999887643221 111 0245678899999998766554
Q ss_pred HH
Q 040015 384 GI 385 (1399)
Q Consensus 384 ~~ 385 (1399)
..
T Consensus 237 l~ 238 (354)
T 1sxj_E 237 LE 238 (354)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.96 E-value=0.00011 Score=81.12 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHH-------HHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 173 CVYGRENDKNAIVE-------LLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++|+...++++.. .+.... ....+.+.|+|++|+|||++|+.+++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~----~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~---- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD----RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK---- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS----SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC----CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH----
Confidence 46788777666665 332211 234678899999999999999999983 22222 22332221
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC----------CcchhhhhhcccCC---CCCCcE
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR----------RNDDWDLICSPLKA---GARGSK 312 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~ 312 (1399)
+.+. ........+...+......+..+|++||++.- .....+.+...+.. ......
T Consensus 101 ---------~~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ---------MIGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ---------CTTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ---------hcCC--chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 1110 00001123333344444567889999998431 11112223232221 223445
Q ss_pred EEEEcCChhhHHhc---Cc-cceEeCCCCCc-cchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc
Q 040015 313 IIITTRDSSIAASM---GT-VAAHHLECLAF-EDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL 376 (1399)
Q Consensus 313 ilvTtR~~~v~~~~---~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 376 (1399)
||.||......... +. ...+.+++++. ++...++.+.. ... .+....|++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCC
Confidence 67778776544331 21 35688888888 66666655421 111 34467888888873
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.93 E-value=0.0006 Score=79.44 Aligned_cols=139 Identities=10% Similarity=0.030 Sum_probs=76.7
Q ss_pred cCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCc-cccccCCCcceEeecCCCCCccCCCCCC--CCC
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLP-NGMYILTSLQEFSIHGCSSLMSFPEGGL--PPN 1301 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~ 1301 (1399)
+..+.+|+.+.+..+- ...-...+..+.+|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .++.++...+ ..+
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred cccccccceeeeccce-eEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 4455556665554321 1112234455566666666442 34442 2344566666666643 3555555433 356
Q ss_pred cceEEeccCCCCCCCcccccccCCCccEEEEcCCCCccccC-CCCCCCCCcceEEcCCCCCCCccc-cccCCCC
Q 040015 1302 LISLSILDCENLKPSSEWGLHRLTCLADFSFGGCQGLVSFP-KGWFLPKNLSSLYLERLPNLKSLP-NGLKNLK 1373 (1399)
Q Consensus 1302 L~~L~l~~c~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~ 1373 (1399)
|+.+.+.+ +.++.+...+|.+|++|+.+.|.. .+..++ ..|.++++|+.+.+.. .++.|. ..|.+++
T Consensus 288 L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSS 356 (379)
T ss_dssp CCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSS
T ss_pred cccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCC
Confidence 66666643 345566666777778888777753 244444 3567777777777754 366665 4455543
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.92 E-value=4e-05 Score=87.18 Aligned_cols=175 Identities=17% Similarity=0.120 Sum_probs=103.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.+++|++..++.+..++.... ...++.+.|++|+|||++|+.+++.. .. ..+.++.+.. ..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l--~~---~~~~i~~~~~-~~------- 86 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDV--NA---DMMFVNGSDC-KI------- 86 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHT--TE---EEEEEETTTC-CH-------
T ss_pred HHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--CC---CEEEEccccc-CH-------
Confidence 568999999999999997543 23577888999999999999998732 21 2344443331 11
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHh-----cCcceEEEecCCcCCC-cchhhhhhcccCCCCCCcEEEEEcCChh-hHH
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKL-----AGKKFLLVLDDVWSRR-NDDWDLICSPLKAGARGSKIIITTRDSS-IAA 324 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l-----~~~r~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 324 (1399)
+.+...+.+.. .+++-+||+||+..-. .+..+.+...+.....+.++|+||.... +..
T Consensus 87 ---------------~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 87 ---------------DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIK 151 (324)
T ss_dssp ---------------HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCT
T ss_pred ---------------HHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCH
Confidence 12222222222 2367899999996544 3445555554443335667888886543 111
Q ss_pred hc-CccceEeCCCCCccchHHH-------HHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 325 SM-GTVAAHHLECLAFEDCSSI-------FMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 325 ~~-~~~~~~~l~~L~~~~~~~l-------f~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
.+ ....++++++.+.++-.++ +.+.+..... ..++ .+....|++.++|.+..+...
T Consensus 152 ~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 152 PLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp THHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 11 1124789999998774332 2222222111 1111 256778889998887654433
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.88 E-value=0.00014 Score=82.64 Aligned_cols=171 Identities=10% Similarity=0.057 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccc--------------------ccccceEEEE
Q 040015 178 ENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVD--------------------GRFDLKVWVC 237 (1399)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~--------------------~~f~~~~wv~ 237 (1399)
++..+.+...+..+. -...+.++|+.|+|||++|+.+++...-. .|+| ..++.
T Consensus 8 ~~~~~~l~~~i~~~~------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTTC------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred HHHHHHHHHHHHcCC------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 455677777775442 24578899999999999999998632100 0112 12222
Q ss_pred eCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHH----hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEE
Q 040015 238 VSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREK----LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKI 313 (1399)
Q Consensus 238 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~----l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~i 313 (1399)
... .......+++...+... ..+++-++|+|+++.-..+..+.+...+.....++.+
T Consensus 81 ~~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 00011133332222221 1256778999999765555566676666555566777
Q ss_pred EEEcCChh-hHHhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 314 IITTRDSS-IAASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 314 lvTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
|++|.+.. +...+ +....+.+++++.++..+.+.+.+ . .. .+.+..+++.++|.|..+..+
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77776543 33222 334689999999999999888764 1 11 234578999999999766544
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.86 E-value=0.00018 Score=79.02 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=99.7
Q ss_pred CccccchhHHHHHHHHHhc---cCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMV---EDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~---~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++.+.+++.. ...- .+....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 4689999888777665532 1100 00123455789999999999999999973 2222 234444332110
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC------------cc---hhhhhhcccCC--CCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR------------ND---DWDLICSPLKA--GAR 309 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~------------~~---~~~~l~~~l~~--~~~ 309 (1399)
-.......+...+.......+.+|++|+++.-. .. ....+...+.. ...
T Consensus 79 --------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 --------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000112223333333434567899999996421 01 11222222221 123
Q ss_pred CcEEEEEcCChhhH-Hhc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 310 GSKIIITTRDSSIA-ASM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 310 gs~ilvTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
+..||.||...... ... . -...+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 55677777654321 111 1 1256788889999999998887643321 12222234778888888754 44433
No 187
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.84 E-value=1.3e-06 Score=100.88 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=74.5
Q ss_pred CccceeccCCCCCCcccccccccccccccCCCCcccEEEecCCCCccc-Cccc-----CCCCCCcEEeccCCcccc----
Q 040015 555 ECLRTFLPLDPTGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITAL-PDSV-----GDLKHLRYLDLSRTAIKQ---- 624 (1399)
Q Consensus 555 ~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i-----~~L~~L~~L~Ls~n~i~~---- 624 (1399)
+.|+.|.+.++.. ...-...++..+++|+.|+|++|.++.. ...+ ....+|++|+|++|.|..
T Consensus 101 ~~L~~L~Ls~n~l-------~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQL-------DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCC-------CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH
T ss_pred CCceEEEecCCCC-------CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH
Confidence 5677777766542 1111222333455777888888777643 2222 245677888888777753
Q ss_pred -ccccccCCCCCcEEEccCCCCCC-----CcChhhccCCCCCEEEccCCcccc-----cCccccCCCCCCccCc
Q 040015 625 -LPDSTGNLCNLQSIILLECYSLS-----KLPTDLGNLTGLRHLRMSGSRLRE-----MPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 625 -lP~~i~~L~~L~~L~L~~~~~~~-----~lP~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~ 687 (1399)
++..+..+++|++|+|++|. ++ .++..+...++|++|++++|.++. ++..+...++|++|+.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence 55556777778888887773 33 234556667778888888777653 2223344556666554
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.84 E-value=0.00011 Score=82.83 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=90.9
Q ss_pred ccccchhHHHHHHHHHhccC--------CCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 173 CVYGRENDKNAIVELLMVED--------DSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
.++|.+..++.|.+++.... +-........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58899998888887664210 0001133557889999999999999988874221111111123333211
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC---------CcchhhhhhcccCCCCCCcEEEE
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR---------RNDDWDLICSPLKAGARGSKIII 315 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilv 315 (1399)
.+.... .......+...+... +.-+|++|+++.- .......+...+.....+..||+
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 011122222222222 3469999999632 22334555555555555677888
Q ss_pred EcCChh----------hHHhcCccceEeCCCCCccchHHHHHHhhhc
Q 040015 316 TTRDSS----------IAASMGTVAAHHLECLAFEDCSSIFMNQAFE 352 (1399)
Q Consensus 316 TtR~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 352 (1399)
||.... +...+ ...+.+++++.++-.+++...+..
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 886432 22222 267899999999999998877643
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.84 E-value=1.7e-05 Score=82.09 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++||+.+++.+.+++.... .+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~-------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT-------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC-------CCceEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999996542 446689999999999999999874
No 190
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=5.8e-06 Score=95.51 Aligned_cols=115 Identities=17% Similarity=0.054 Sum_probs=84.8
Q ss_pred ccCccceeccCCCCCCccccccccccccccc-CCCCcccEEEecCCCCcc-----cCcccCCCCCCcEEeccCCccc---
Q 040015 553 EAECLRTFLPLDPTGEIGVSYLADRVPRDIL-PRLKCLRVLSFSACRITA-----LPDSVGDLKHLRYLDLSRTAIK--- 623 (1399)
Q Consensus 553 ~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~n~i~--- 623 (1399)
.+++|+.|.+.++...-. ........+ ...+.|+.|+|++|.|+. ++..+..+++|++|+|++|.|.
T Consensus 124 ~L~~L~~L~Ls~n~l~~~----~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g 199 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPE----ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG 199 (372)
T ss_dssp HHHTEEEEECCSSCCCHH----HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH
T ss_pred HHHhccHhhcCCCCCCHH----HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH
Confidence 456789999887753100 001111112 356889999999999874 4566678899999999999987
Q ss_pred --cccccccCCCCCcEEEccCCCCCC-----CcChhhccCCCCCEEEccCCccccc
Q 040015 624 --QLPDSTGNLCNLQSIILLECYSLS-----KLPTDLGNLTGLRHLRMSGSRLREM 672 (1399)
Q Consensus 624 --~lP~~i~~L~~L~~L~L~~~~~~~-----~lP~~i~~L~~L~~L~l~~~~l~~l 672 (1399)
.++..+...++|++|+|++| .++ .++..+...++|++|++++|.++..
T Consensus 200 ~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 200 LELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 35677888999999999999 444 3455567789999999999988643
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=2.2e-05 Score=76.94 Aligned_cols=113 Identities=19% Similarity=0.078 Sum_probs=68.8
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccc-cccccceEEEEeCCccCHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRV-DGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
.++|+...++++.+.+..-. ....-|.|+|.+|+|||++|+.+++.... ...| + +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-------
T ss_pred CceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-------
Confidence 57899999999998886532 11234679999999999999999974221 2222 3 555543221
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
.. ... .+.. .+.-.|++|+++.-..+....+...+.......+||+||..
T Consensus 66 -----------~~-~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -----------PQ-LND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -----------SC-HHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -----------hh-hhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 01 111 1111 13357899999776555556666655444445678777764
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=1.1e-05 Score=92.32 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=37.8
Q ss_pred cCCCCCCceEeecCCCCCcccCCCCCCCCCccceecccccCCccCcccc--ccCCCcceEeecC
Q 040015 1225 LHNLAFLDHLEIDDCPLLQSFPEPCLPTSMLRYARISNCQNLKFLPNGM--YILTSLQEFSIHG 1286 (1399)
Q Consensus 1225 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~ 1286 (1399)
+..+|+|++|.|++|... .++. + .+++|+.|+|..|.........+ ..+|+|+.|+|+.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 567788999999887433 2333 2 37789999998765322211222 2688888888853
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00017 Score=82.53 Aligned_cols=175 Identities=11% Similarity=0.159 Sum_probs=103.3
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcccccccc-ceEEEEeCCccCHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD-LKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 250 (1399)
..++|.+..++.+..++..+. .+.+.++|+.|+||||+|+.+++... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS-------
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc-------
Confidence 457899999999988886543 33388999999999999999987321 11111 112222222111
Q ss_pred HHHHccCCCCCCCcchHHHHHHHHHHh------cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh-hH
Q 040015 251 ILKSVTSKPADVDDDLNLLQVCLREKL------AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS-IA 323 (1399)
Q Consensus 251 i~~~l~~~~~~~~~~~~~l~~~l~~~l------~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 323 (1399)
.+.+...+.... .+.+-++|+|++..-..+..+.+...+......+++|++|.... +.
T Consensus 90 ---------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~ 154 (340)
T 1sxj_C 90 ---------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 154 (340)
T ss_dssp ---------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ---------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccc
Confidence 222222222221 13467899999965444455555555544445667777765432 21
Q ss_pred Hhc-CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHH
Q 040015 324 ASM-GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAV 380 (1399)
Q Consensus 324 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 380 (1399)
..+ .....+.+.+++.++..+.+.+.+-.... .-..+..+.|++.++|.+--+
T Consensus 155 ~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~----~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 155 PALLSQCTRFRFQPLPQEAIERRIANVLVHEKL----KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC----CBCHHHHHHHHHHHTTCHHHH
T ss_pred hhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 111 22347889999999888888766532211 112345678888999988643
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.73 E-value=0.00021 Score=81.07 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=87.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...+.|+|++|+||||||+.+++... ..-..++++++. ....++...+... . .... .+.+ .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~------~~~~~~~~~~~~~-----~-~~~~----~~~~-~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD------DFAQAMVEHLKKG-----T-INEF----RNMY-K 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH------HHHHHHHHHHHHT-----C-HHHH----HHHH-H
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH------HHHHHHHHHHHcC-----c-HHHH----HHHh-c
Confidence 45688999999999999999997421 111234555433 2333333333211 0 2222 2222 2
Q ss_pred cceEEEecCCcCCCc--chhhhhhcccCC-CCCCcEEEEEcCCh---------hhHHhcCccceEeCCCCCccchHHHHH
Q 040015 280 KKFLLVLDDVWSRRN--DDWDLICSPLKA-GARGSKIIITTRDS---------SIAASMGTVAAHHLECLAFEDCSSIFM 347 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 347 (1399)
+.-+|++||+..-.. ...+.+...+.. ...|..||+||... .+...+....++++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999965432 122333333221 12355788877532 1222233335789999 9999999998
Q ss_pred HhhhcCCCCCCCccHHHHHHHHHHHccCchhH
Q 040015 348 NQAFENRNTGISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
..+..... ..+ .++...|++.+ |..-.
T Consensus 177 ~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNL-ELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTC-CCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCC-CCC---HHHHHHHHHhC-CCHHH
Confidence 87753321 112 35567888888 77643
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=3.4e-05 Score=88.10 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=30.7
Q ss_pred cCCccceeeeccchhhhhhhhhh-cccccccccEEEeecCCCccc----chhhhhCCCCccEEEEecC
Q 040015 1062 HFTALEELQISHLAELMTLSNKI-GLRSLLSLQRLEISECPYFKE----LPEKFYELSTLKVLRISNC 1124 (1399)
Q Consensus 1062 ~l~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~ls~c 1124 (1399)
.+++|+.|++.+|.......... ....+++|++|+|+.|..... ++..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 35666666666665432221111 012456666666666553321 2233344566666666654
No 196
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=2.7e-05 Score=83.89 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=27.9
Q ss_pred CCCcccEEEecCCCCccc---CcccCCCCCCcEEeccCCccccccccccCCC--CCcEEEccCC
Q 040015 585 RLKCLRVLSFSACRITAL---PDSVGDLKHLRYLDLSRTAIKQLPDSTGNLC--NLQSIILLEC 643 (1399)
Q Consensus 585 ~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~Ls~n~i~~lP~~i~~L~--~L~~L~L~~~ 643 (1399)
++++|+.|+|++|.|+.+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC
Confidence 345555555555555443 23344555555555555555544 2233333 4555555555
No 197
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.63 E-value=0.00041 Score=78.39 Aligned_cols=186 Identities=13% Similarity=0.085 Sum_probs=101.6
Q ss_pred CCccccchhHHHHHHHHHhccC---C--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLMVED---D--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
-.+++|.+..++.|.+++.... . .......+-|.++|++|+|||++|+.+++. ....| +.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 3568999999999998883110 0 001123456889999999999999999983 22222 223221
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-----------chhhhhhcccC---CCCCCc
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-----------DDWDLICSPLK---AGARGS 311 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 311 (1399)
.+ .... .......+...+...-..++.+|+||++..-.. .....+...+. ....+.
T Consensus 86 ~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1110 011112222223333345668999999964211 01222222222 233455
Q ss_pred EEEEEcCChhh-----HHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHHH
Q 040015 312 KIIITTRDSSI-----AASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKRM 383 (1399)
Q Consensus 312 ~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 383 (1399)
.||.||..... .+. -...+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+
T Consensus 156 ~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 66667765332 221 2246778888888888888887643211 11123467888888874 4444443
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.62 E-value=0.00019 Score=85.47 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=79.9
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---ccccc-cc-eEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDGRF-DL-KVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~~f-~~-~~wv~~~~~~~~~~ 246 (1399)
..+|||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++... +.... +. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------
Confidence 459999999999999997543 23457999999999999999987321 00111 11 1222222
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHh-
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAAS- 325 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~- 325 (1399)
....+ ... ..+...+...-..++.+|++|.- .+....+...+.. ...++|.+|........
T Consensus 246 ------~~~~g---~~e---~~~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 ------TKYRG---EFE---DRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------C---TTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred ------ccccc---hHH---HHHHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 00000 111 12222333333456789999921 1233334444432 24566666655432111
Q ss_pred ------cCccceEeCCCCCccchHHHHHHhh
Q 040015 326 ------MGTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 326 ------~~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
.....++.+++.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123468999999999999998754
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.61 E-value=0.00047 Score=79.06 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=101.1
Q ss_pred CccccchhHHHHHHHHHhcc---CCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVE---DDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++.|.+.+... .+. ......+.|.|+|++|+|||++|+.+++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998887531 000 00123457889999999999999999873 2222 23444432211
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-----------chhhhhhcccCC----CCCCc
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-----------DDWDLICSPLKA----GARGS 311 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~~----~~~gs 311 (1399)
.. .......+...+...-..++.+|+||++..-.. .....+...+.. ...+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 011011222222222345678999999842100 012222222221 12344
Q ss_pred EEEEEcCChh-hHHhc-C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccC-chhHHHHHH
Q 040015 312 KIIITTRDSS-IAASM-G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEG-LLLAVKRMG 384 (1399)
Q Consensus 312 ~ilvTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 384 (1399)
.||.||.... +...+ . -...+.+...+.++..+++...+..... .-..+....|++.+.| .+-+|..+.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666665432 21111 1 2246788888888888888776633211 1113457788899988 455555544
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.60 E-value=0.00044 Score=79.06 Aligned_cols=186 Identities=14% Similarity=0.105 Sum_probs=99.4
Q ss_pred CccccchhHHHHHHHHHhcc----CC-CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVE----DD-SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++.|.+.+... .- .......+-|.|+|++|+|||++|+.+++. ....| +.+..+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999998887321 00 001122345789999999999999999984 22222 223221 1
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcc-----------hhhhhhcccC---CCCCCcE
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRND-----------DWDLICSPLK---AGARGSK 312 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 312 (1399)
+ ..... ......+...+...-..++.+|+||+++.-... ....+...+. ....+..
T Consensus 120 l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 11111 111222222233333457789999999642211 0122222221 1234556
Q ss_pred EEEEcCChh-----hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHHHH
Q 040015 313 IIITTRDSS-----IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKRMG 384 (1399)
Q Consensus 313 ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 384 (1399)
||.||.... +.+ .-...+.+...+.++-.+++......... .. -......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776442 222 22356778888888888888876632211 11 133467888899884 44454443
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.57 E-value=0.0013 Score=74.04 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=100.2
Q ss_pred CccccchhHHHHHHHHHhcc----CC-CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVE----DD-SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++.|.+.+..+ +- .......+-|.++|++|+|||++|+.+++... ... .+.+..+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 46899999998888776421 00 00112346788999999999999999997321 111 12333332111
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-------chh----hhhhcccC---CCCCCcE
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-------DDW----DLICSPLK---AGARGSK 312 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-------~~~----~~l~~~l~---~~~~gs~ 312 (1399)
.. .......+...+...-..++.+|++|+++.-.. ... ..+...+. ....+..
T Consensus 85 -----------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -----------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 011122233333333346778999999954210 011 11222221 1234555
Q ss_pred EEEEcCChhh-HHhc--CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHHHH
Q 040015 313 IIITTRDSSI-AASM--GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKRMG 384 (1399)
Q Consensus 313 ilvTtR~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 384 (1399)
||.||..... ...+ .-...+.++..+.++-.+++......... . ........|++.+.|. +-.|..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-S---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666654321 1111 22356788888888888888776532211 1 1134567889999887 43454443
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=1.1e-05 Score=86.87 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=77.9
Q ss_pred cCCCCcccE--EEecCCCCcccCcc----cCCCCCCcEEeccCCcccccc---ccccCCCCCcEEEccCCCCCCCcChhh
Q 040015 583 LPRLKCLRV--LSFSACRITALPDS----VGDLKHLRYLDLSRTAIKQLP---DSTGNLCNLQSIILLECYSLSKLPTDL 653 (1399)
Q Consensus 583 ~~~l~~Lr~--L~Ls~~~i~~lp~~----i~~L~~L~~L~Ls~n~i~~lP---~~i~~L~~L~~L~L~~~~~~~~lP~~i 653 (1399)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.|..++ ..+..+++|++|+|++| .+..+ ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhh
Confidence 555566666 67777754444322 256889999999999998654 66789999999999999 66665 345
Q ss_pred ccCC--CCCEEEccCCcccc-cCc-------cccCCCCCCccCceee
Q 040015 654 GNLT--GLRHLRMSGSRLRE-MPM-------KMYKLKNLQTLSHFVV 690 (1399)
Q Consensus 654 ~~L~--~L~~L~l~~~~l~~-lp~-------~i~~L~~L~~L~~~~~ 690 (1399)
..+. +|++|++++|.+.. +|. .+..+++|+.|+...+
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 6666 99999999999863 442 2567888888875433
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=0.0016 Score=72.86 Aligned_cols=185 Identities=12% Similarity=0.088 Sum_probs=98.1
Q ss_pred CccccchhHHHHHHHHHhccCC-----CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDD-----SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++.+.+++..+.. .......+.+.|+|++|+|||++|+.+++. .... .+.+.++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 4689999999999988743100 000112457889999999999999999973 2222 23344332211
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcc-----------hhhhhhcc---cCCC--CCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRND-----------DWDLICSP---LKAG--ARG 310 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~-----------~~~~l~~~---l~~~--~~g 310 (1399)
. ............+......++.+|++|++..-... ....+... ++.. +.+
T Consensus 93 -----------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 01111122222233333456789999999542110 01111111 1111 134
Q ss_pred cEEEEEcCChh-----hHHhcCccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 311 SKIIITTRDSS-----IAASMGTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 311 s~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
..||.||.... +...+ ...+.+...+.++-..++...+..... +-..+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55677776542 22222 245677777777777777666533211 1113456788899999875 44443
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=2.6e-05 Score=80.07 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=50.0
Q ss_pred cCCCCcccEEEecCCCCcc-----cCcccCCCCCCcEEeccCCcccc-----ccccccCCCCCcEEEc--cCCCCCCC--
Q 040015 583 LPRLKCLRVLSFSACRITA-----LPDSVGDLKHLRYLDLSRTAIKQ-----LPDSTGNLCNLQSIIL--LECYSLSK-- 648 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~n~i~~-----lP~~i~~L~~L~~L~L--~~~~~~~~-- 648 (1399)
+...+.|++|+|++|.|.. +.+.+...+.|++|+|++|.|.. +...+...+.|++|+| ++| .++.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 4455666677777666652 23344445666667776666652 4555666666666666 555 3322
Q ss_pred ---cChhhccCCCCCEEEccCCccc
Q 040015 649 ---LPTDLGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 649 ---lP~~i~~L~~L~~L~l~~~~l~ 670 (1399)
+...+...++|++|++++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3334455566666666666543
No 205
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.53 E-value=2.4e-05 Score=80.35 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=81.7
Q ss_pred cccCCCCcccEEEecCC-CCcc-----cCcccCCCCCCcEEeccCCccc-----cccccccCCCCCcEEEccCCCCCCC-
Q 040015 581 DILPRLKCLRVLSFSAC-RITA-----LPDSVGDLKHLRYLDLSRTAIK-----QLPDSTGNLCNLQSIILLECYSLSK- 648 (1399)
Q Consensus 581 ~~~~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~L~~L~Ls~n~i~-----~lP~~i~~L~~L~~L~L~~~~~~~~- 648 (1399)
.++...+.|+.|+|++| .|.. +...+...++|++|+|++|.|. .+...+...++|++|+|++| .++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 45677899999999999 8863 4566778899999999999987 35666777889999999999 5543
Q ss_pred ----cChhhccCCCCCEEEc--cCCcccc-----cCccccCCCCCCccCc
Q 040015 649 ----LPTDLGNLTGLRHLRM--SGSRLRE-----MPMKMYKLKNLQTLSH 687 (1399)
Q Consensus 649 ----lP~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~~ 687 (1399)
+...+...++|++|++ ++|.+.. +...+...++|++|+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 5666788899999999 7888763 3333445566766654
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=7.4e-05 Score=76.50 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
++..++.+.+++..-. ......+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~----~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN----PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCC----GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhc
Confidence 4445555555554321 1224688999999999999999999743212222 233443 3344444443332
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhh--hhhcccCCC-CCCcEEEEEcCC
Q 040015 257 SKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWD--LICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
.... ..... .+. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 88 ~~~~------~~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKD------TKFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCC------SHHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchH------HHHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 11111 122 4569999999754334454 232222211 246778888875
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00014 Score=94.03 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=81.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---ccccc-c-ceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDGRF-D-LKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~~f-~-~~~wv~~~~~~~~~~ 246 (1399)
..+|||+++++++++.|.... ..-+.++|.+|+||||+|+.+++... +.... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred cccCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 468999999999999997643 23467999999999999999987421 11111 1 223333322110
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhc-CcceEEEecCCcCCC--------cchhhhhhcccCCCCCCcEEEEEc
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLA-GKKFLLVLDDVWSRR--------NDDWDLICSPLKAGARGSKIIITT 317 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~-~~r~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTt 317 (1399)
+ .....+....+...+...-. +++.+|++|++..-. .+..+.+...+.. .+..+|.+|
T Consensus 240 ----------g-~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 240 ----------G-AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred ----------c-CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 0 00011112233333333333 367899999995421 1111122222222 234456555
Q ss_pred CChhhH-----Hhc-CccceEeCCCCCccchHHHHHHh
Q 040015 318 RDSSIA-----ASM-GTVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 318 R~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
...... ..+ .....+.+++.+.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 433321 111 12346899999999999988654
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00045 Score=76.60 Aligned_cols=149 Identities=8% Similarity=0.032 Sum_probs=92.2
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc-ccccccceEEEEeCC-ccCHHHHHHHHHH
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR-VDGRFDLKVWVCVSD-QFDVLRVTTTILK 253 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~ 253 (1399)
|-++.++.+...+..+. ..++.++|+.|+||||+|+.+++... .+.......++..++ ...+.+ .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~~-------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS-------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC-------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHH
Confidence 34556777777775432 67889999999999999999986310 111122234444332 222221 223333
Q ss_pred HccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh-hhHHhcCccceE
Q 040015 254 SVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS-SIAASMGTVAAH 332 (1399)
Q Consensus 254 ~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~ 332 (1399)
.+.... ..+++-++|+|+++.-.....+.+...+......+.+|++|.++ .+...+... .+
T Consensus 73 ~~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 73 FLNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 332111 12456689999997766566777777776655677777766543 444444444 99
Q ss_pred eCCCCCccchHHHHHHhh
Q 040015 333 HLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 333 ~l~~L~~~~~~~lf~~~a 350 (1399)
+++++++++..+.+.+.+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887765
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.49 E-value=0.00011 Score=77.06 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCC
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSK 258 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 258 (1399)
..++.+.+++.... .....+.+.|+|++|+|||+||+.+++.. ......++|++++ .+...+.......
T Consensus 36 ~~~~~~~~~~~~~~---~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~ 104 (202)
T 2w58_A 36 KAIRFAERFVAEYE---PGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQDQ 104 (202)
T ss_dssp HHHHHHHHHHHHCC---SSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC---C
T ss_pred HHHHHHHHHHHHhh---hccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhccc
Confidence 34556666665442 11112678899999999999999999843 2333456666553 3444444332211
Q ss_pred CCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhh--hhc-ccCCC-CCCcEEEEEcCC
Q 040015 259 PADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDL--ICS-PLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 259 ~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 319 (1399)
. .......+ .. .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 105 -----~-~~~~~~~~----~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 -----T-MNEKLDYI----KK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -----C-CHHHHHHH----HH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -----h-HHHHHHHh----cC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1 22222222 22 2499999997644334332 221 12111 235578888874
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.0015 Score=72.93 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=98.4
Q ss_pred CccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.+++|.+..+++|.+++...-.. -+-...+.|.|+|++|+|||++|+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 46899999998888877532000 00122457889999999999999999983 2222 22332 22
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC--------------cchhhhhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR--------------NDDWDLICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~--------------~~~~~~l~~~l~~--~~~ 309 (1399)
.+... ..+.. ...+...+.......+.+|++|++..-. ......+...+.. ...
T Consensus 84 ~l~~~----~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELLTM----WFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHhh----hcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 21111 1222333333444567899999995310 0012223332221 224
Q ss_pred CcEEEEEcCChhhH-Hh-cC---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhH
Q 040015 310 GSKIIITTRDSSIA-AS-MG---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLA 379 (1399)
Q Consensus 310 gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 379 (1399)
+..||.||...... .. .. -...+.++..+.++-.+++......... ..... ...+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 56777777655322 11 11 2256888888888888888766532211 11222 23566677777644
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.44 E-value=0.0017 Score=76.68 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCccccchhHHHHHHHHHhcc----CC-CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLMVE----DD-SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
-.+++|.+..++.|.+.+..+ .- .......+-|.++|++|+|||++|+.+++.. ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH---
Confidence 356899999999998877321 00 0001234678899999999999999999842 112233333221
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-------ch----hhhhhcccCC---CCCCc
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-------DD----WDLICSPLKA---GARGS 311 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-------~~----~~~l~~~l~~---~~~gs 311 (1399)
+. ....+. .......+. ...-..++.+|+||+++.-.. .. ...+...+.. ...+.
T Consensus 204 -l~----~~~~g~---~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 -LV----SKWLGE---SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HH----hhhcch---HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11 111111 111122222 222245678999999964310 11 1222222222 23456
Q ss_pred EEEEEcCChhhH-Hhc-C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHHH
Q 040015 312 KIIITTRDSSIA-ASM-G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKRM 383 (1399)
Q Consensus 312 ~ilvTtR~~~v~-~~~-~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 383 (1399)
.||.||...... ..+ . -...+.+...+.++-..+|..++..... .........|++.+.|. +-.|..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 677777654321 111 1 2246777777777777888776532211 01123467888888884 4344443
No 212
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.40 E-value=0.0017 Score=75.56 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=98.5
Q ss_pred CCccccchhHHHHHHHHHhccCC-----CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDD-----SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~-----~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
-.+++|.+..++.|.+++..... .......+-|.|+|.+|+|||++|+.+++. .... .+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc-
Confidence 35689999999999988832110 000112457889999999999999999873 2222 233333222110
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC-------c----chhhhhhcccC---C-CCCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR-------N----DDWDLICSPLK---A-GARG 310 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~-------~----~~~~~l~~~l~---~-~~~g 310 (1399)
. .......+...+...-.....+|+||+++.-. . .....+...+. . ....
T Consensus 188 ---------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 ---------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ---------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 00101222222333334456799999995320 0 01112221111 1 1223
Q ss_pred cEEEEEcCChh-hHHhc-Cc-cceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh-HHHHH
Q 040015 311 SKIIITTRDSS-IAASM-GT-VAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL-AVKRM 383 (1399)
Q Consensus 311 s~ilvTtR~~~-v~~~~-~~-~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 383 (1399)
..||.||.... +...+ .. ...+.+...+.++-.+++...+..... .-..+....|++.+.|..- +|..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 45666665432 11111 11 246788888888888888877633211 1123456788999988654 44444
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.38 E-value=8.1e-05 Score=72.63 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=62.4
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
.++|++..++++.+.+.... ....-|.|+|..|+|||++|+.+++... ..+.++++.. ....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh-----
Confidence 57899999999888876432 1123467999999999999999987422 2222222211 0000
Q ss_pred HHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC-CCCcEEEEEcCC
Q 040015 253 KSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG-ARGSKIIITTRD 319 (1399)
Q Consensus 253 ~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 319 (1399)
. ..+.+. .+.-.|++|++..-..+....+...+... ..+.+||+||..
T Consensus 67 ----------------~-~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------P-MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------H-HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------h-hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 111111 22457899999765544455555444332 245678887763
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.31 E-value=0.003 Score=71.54 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=94.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
..++|.+..++.+...+..... .+.....+.++|+.|+||||||+.+++. ....|. .....-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~--~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~-------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM--RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVK-------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH--HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCS--------
T ss_pred HHccCcHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcC--------
Confidence 4578998888887777654200 0122457899999999999999999983 222211 111100001
Q ss_pred HHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC--------C----------CCcEE
Q 040015 252 LKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG--------A----------RGSKI 313 (1399)
Q Consensus 252 ~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~i 313 (1399)
..++...+ ..+ .++-++++|++..-.....+.+...+... . ....+
T Consensus 90 --------------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 --------------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp --------------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred --------------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111111 111 23456777877543222233332211111 0 01122
Q ss_pred E-EEcCChhhHHhcC--ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 314 I-ITTRDSSIAASMG--TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 314 l-vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
+ .|++...+...+. ......+++.+.++-.+++.+.+-.... ....+.+..|+++++|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 2 3444333322111 1135789999999999999887643221 223456889999999999765443
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.30 E-value=0.00053 Score=75.21 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=34.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|++..+.++.+.+.... .....|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 347899999998887776432 11245679999999999999999974
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.26 E-value=0.00094 Score=75.32 Aligned_cols=123 Identities=13% Similarity=0.233 Sum_probs=66.7
Q ss_pred ccccchhHHHHHHHHHhccCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
.++|.+..++.+...+..... .........+.++|++|+|||++|+.+++.. ...-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 478999999988888865310 0011224688999999999999999999732 1211234556655433221 1122
Q ss_pred HHHHccCCCCCCC-cchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhccc
Q 040015 251 ILKSVTSKPADVD-DDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 251 i~~~l~~~~~~~~-~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
+. +....... .....+...+. ....-+++||++..-.......+...+
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hc---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 21 11111000 00112222222 233469999999765555555555444
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.23 E-value=0.00088 Score=79.51 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=100.6
Q ss_pred CccccchhHHHHHHHHHhccCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS------SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
..++|.+..+++|.+++...-..+ +....+-|.|+|.+|+|||++|+.+++. ....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 458999999999988885420000 0112345789999999999999999873 22222 333321
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-----------chhhhhhcccCC--CCCCcE
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-----------DDWDLICSPLKA--GARGSK 312 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ 312 (1399)
++...+. ......+...+.....+++.+|+||+++.-.. .....+...+.. ...+..
T Consensus 273 ----~l~~~~~------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ----EIMSKLA------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ----HHHTSCT------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ----Hhhhhhc------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1111111 11123334444455566778999999832110 111223333321 223456
Q ss_pred EEEEcCChh-hHHhc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCc-hhHHHH
Q 040015 313 IIITTRDSS-IAASM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGL-LLAVKR 382 (1399)
Q Consensus 313 ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~ 382 (1399)
||.||.... +...+ .-...+.+...+.++-.+++..++..... ..... ..++++.+.|. +-.+..
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHH
Confidence 666776542 22222 12246888888999999999877632211 11222 35567777774 433443
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.00086 Score=74.71 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 358999999999988886542 11235679999999999999999873
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.0011 Score=84.59 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=81.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc---cccccccceEEEEeCCccCHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS---RVDGRFDLKVWVCVSDQFDVLRVT 248 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~---~~~~~f~~~~wv~~~~~~~~~~~~ 248 (1399)
..+|||+.+++++...|.... ..-+.++|.+|+|||++|+.+++.. .+.......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC-------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 469999999999999997643 2346799999999999999998742 1111111111111111
Q ss_pred HHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHHhc--
Q 040015 249 TTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAASM-- 326 (1399)
Q Consensus 249 ~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~-- 326 (1399)
..... .+. ...+...+......++.+|++|.. .+....+...+. ....++|.||.........
T Consensus 245 ---g~~~~---G~~---e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ---GTKYR---GEF---EDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ---ccccc---chH---HHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 00000 011 122233333344467889999921 122333443333 2245677766654421111
Q ss_pred -----CccceEeCCCCCccchHHHHHHhh
Q 040015 327 -----GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 327 -----~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
.....+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 122568999999999999998654
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.19 E-value=0.0023 Score=72.03 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcc--CCCC-----CCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVE--DDSS-----SSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~--~~~~-----~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|++..++.+...+... .... .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999888651 0000 0012346779999999999999999873
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00027 Score=69.16 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
...++|+|..|+|||||++.+++..... .+ .++++...+.... .+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-------------------------------~~~~ 82 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-------------------------------DAAF 82 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-------------------------------GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-------------------------------HHHh
Confidence 4588999999999999999999743221 11 2566655432211 0123
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCC-CCCCc-EEEEEcCC
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKA-GARGS-KIIITTRD 319 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTtR~ 319 (1399)
+.-++|+||+.......-+.+...+.. ...|. +||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 456889999965433222233332221 11233 48888874
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.09 E-value=0.0021 Score=82.22 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=85.8
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCcc---ccc-cccceEEE-EeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSR---VDG-RFDLKVWV-CVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~---~~~-~f~~~~wv-~~~~~~~~~~ 246 (1399)
..++||+.+++++.+.|.... ..-+.|+|.+|+|||++|+.+++... +.. .....+|. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCccCCHHHHHHHHHHHhccC-------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----
Confidence 468999999999999996543 34567999999999999999987321 111 12333331 11110
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCC--------cch-hhhhhcccCCCCCCcEEEEEc
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRR--------NDD-WDLICSPLKAGARGSKIIITT 317 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~--------~~~-~~~l~~~l~~~~~gs~ilvTt 317 (1399)
+.+ ..........+...+...-..++.+|++|++..-. ..+ ...+...+. . .+.++|.+|
T Consensus 254 --------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~~~~I~at 322 (758)
T 1r6b_X 254 --------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGST 322 (758)
T ss_dssp ---------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CCCEEEEEE
T ss_pred --------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CCeEEEEEe
Confidence 000 01111212233333333334467899999996430 111 222333332 2 345666666
Q ss_pred CChhhHHhc-------CccceEeCCCCCccchHHHHHHhh
Q 040015 318 RDSSIAASM-------GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 318 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
......... .....+.+++.+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544322111 112368888888888888876544
No 223
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0069 Score=68.56 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=96.5
Q ss_pred CccccchhHHHHHHHHHhcc----CC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVE----DD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|-++.+++|.+.+.-+ +- .-+-...+-|.++|++|+|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 46889998888887766421 00 001122455789999999999999999983 33333 3344332211
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc--------ch------hhhhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN--------DD------WDLICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~--------~~------~~~l~~~l~~--~~~ 309 (1399)
. ...+....+.......-...+.+|++|+++.-.. .. ...+...+.. ...
T Consensus 221 ------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0 0111122233333333346789999999864210 00 1112222221 234
Q ss_pred CcEEEEEcCChhhHH-hc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 310 GSKIIITTRDSSIAA-SM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
+..||.||..++... .+ .-+..+.++.-+.++-.++|+.+.-+-. .....+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 555677776544321 11 2346788887777777788876653221 111223 356778887754
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0057 Score=70.46 Aligned_cols=181 Identities=17% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
-.++.|-++.+++|.+.+.-+-.. -+-...+-|.++|++|+|||++|+++++. ...+| +.|..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 356899999998887766421000 01123456789999999999999999983 33333 3344332211
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC---------C-cch----hhhhhcccC--CCC
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR---------R-NDD----WDLICSPLK--AGA 308 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~---------~-~~~----~~~l~~~l~--~~~ 308 (1399)
. ........+...+...-...+.+|++|+++.. . ... ...+...+. ...
T Consensus 245 -------------~--~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 -------------K--YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp -------------S--SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred -------------c--ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 01111222333333333466899999998420 0 011 112222222 123
Q ss_pred CCcEEEEEcCChhhH-Hhc---C-ccceEeCCCCCccchHH-HHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 309 RGSKIIITTRDSSIA-ASM---G-TVAAHHLECLAFEDCSS-IFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~-~~~---~-~~~~~~l~~L~~~~~~~-lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
.+..||.||...+.. ..+ + -+..+.+..++..++.. +|..+. .........+ ...|++.+.|.-
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~-~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA-SKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHH-HSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHh-cCCCCCcccC----HHHHHHHCCCCC
Confidence 455677777654321 111 1 22467777676666554 454443 2221111223 356677777753
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.07 E-value=0.003 Score=74.97 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=60.5
Q ss_pred eEEEecCCcCCCcchhhhhhcccCCCCCCcEEE-EE---------cC----ChhhH-HhcCccceEeCCCCCccchHHHH
Q 040015 282 FLLVLDDVWSRRNDDWDLICSPLKAGARGSKII-IT---------TR----DSSIA-ASMGTVAAHHLECLAFEDCSSIF 346 (1399)
Q Consensus 282 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vT---------tR----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf 346 (1399)
-++++|++..-..+.++.+...+...... -+| .| |. ...+. ...+....+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999776666777777776654444 344 34 32 11111 11122345799999999999999
Q ss_pred HHhhhcCCCCCCCccHHHHHHHHHHHc-cCchhHHHHHH
Q 040015 347 MNQAFENRNTGISPDLETIGAEIVNKC-EGLLLAVKRMG 384 (1399)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~i~~~~-~g~PLai~~~~ 384 (1399)
...+-.... .-..+....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 877632221 12234567788888 88887655543
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.00 E-value=0.0077 Score=65.42 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=91.7
Q ss_pred CccccchhHHHHHHHHHh---ccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLM---VEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~---~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.+..++++.+.+. ....- -+....+-+.|+|++|+||||+|+.+++. ....| +.+..+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468999988777665542 21100 00011234789999999999999999973 22222 3333222111
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----------c----hhhhhhcccCC--CCCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----------D----DWDLICSPLKA--GARG 310 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----------~----~~~~l~~~l~~--~~~g 310 (1399)
.. .......+...+.........++++|+++.-.. . ....+...+.. ...+
T Consensus 84 -------~~------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -------MF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------SC------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------Hh------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 011123333334444445567999999832110 0 11112222211 2234
Q ss_pred cEEEEEcCChh-hHHhc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccC-chhHHHH
Q 040015 311 SKIIITTRDSS-IAASM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEG-LLLAVKR 382 (1399)
Q Consensus 311 s~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 382 (1399)
..||.||.... +.... . -...+.++..+.++-.+++....-... ...... ...+++.+.| .+--+..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHH
Confidence 56777776543 21211 1 124677777777777777766542211 111111 3456777777 6644443
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.94 E-value=0.0008 Score=85.88 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred CccccchhHHHHHHHHHhccCCCC--CCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS--SSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~--~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.+...+....... .......+.++|++|+|||++|+.+++.. ...-...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 458999999999988887542110 11234478999999999999999998732 1112234555554422110
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCC-----------CCCcEEEEEcC
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAG-----------ARGSKIIITTR 318 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR 318 (1399)
... ...+...++ ....-+|+||++.....+....+...+..+ ....+||+||.
T Consensus 565 ----------~~~---~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ----------STS---GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------CCC------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ----------ccc---cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000 011111111 123458999999776655555555544321 13457888887
Q ss_pred Ch-----hh----HHhc-----C-ccceEeCCCCCccchHHHHHHh
Q 040015 319 DS-----SI----AASM-----G-TVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 319 ~~-----~v----~~~~-----~-~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
.. .+ ...+ . -..++.+.+++.++-..++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 11 1111 1 1246777777776666665543
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.011 Score=68.22 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred CCccccchhHHHHHHHHHhccC---C---CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 171 ESCVYGRENDKNAIVELLMVED---D---SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~---~---~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
=.++.|-++.+++|.+.+.-+- + .-+-...+-|.++|++|+|||.+|+++++. ....| +.|..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-
Confidence 3468899988888877664210 0 001123467789999999999999999984 33332 3344332211
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----------ch----hhhhhcccC--CCC
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----------DD----WDLICSPLK--AGA 308 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----------~~----~~~l~~~l~--~~~ 308 (1399)
. ........+.......-...+.+|++|+++.... .. ...+...+. ...
T Consensus 254 -------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 0111122222223333356789999999864210 00 112222222 123
Q ss_pred CCcEEEEEcCChhhHH-hc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 309 RGSKIIITTRDSSIAA-SM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 309 ~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
.+..||.||..++... .+ . -+..+.++.-+.++-.++|+.+.-.-.. ....+ ...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 4556777886554322 11 1 2356777766666667777666532211 11222 356777887754
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.80 E-value=0.0016 Score=71.55 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=34.6
Q ss_pred CccccchhHHHHHHHHHhccCCCC-----CCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSS-----SSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+++|.+..++.+.+.+..-..+. +....+-+.|+|++|+|||++|+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 468999988888777654100000 0011223679999999999999999983
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.018 Score=66.10 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred CccccchhHHHHHHHHHhc----cCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMV----EDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|-++.+++|.+.+.- ++- .-+-...+-|.++|++|+|||.+|+++++. ....| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 4688999988888776532 100 001123566789999999999999999983 33333 3343332111
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc------ch--------hhhhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN------DD--------WDLICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~------~~--------~~~l~~~l~~--~~~ 309 (1399)
. ...+....+.......-...+.+|++|+++.... .. ...+...+.. ...
T Consensus 282 ------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------K--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------C--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------c--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 0111122233333333356789999999864210 00 1112222211 223
Q ss_pred CcEEEEEcCChhhH-Hhc---C-ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 310 GSKIIITTRDSSIA-ASM---G-TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 310 gs~ilvTtR~~~v~-~~~---~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
+..||.||...+.. ..+ + -...+.++.-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 44567777544321 111 1 235778877777777778876653221 111222 356778887753
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.007 Score=69.74 Aligned_cols=180 Identities=11% Similarity=0.126 Sum_probs=93.9
Q ss_pred CccccchhHHHHHHHHHhc----cCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMV----EDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|-++.+++|.+.+.- ++- .-+-...+-|.++|++|+|||.+|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 5689999999888876532 100 001123567789999999999999999983 33332 3333332111
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCC-----C-cc----h----hhhhhcccCC--CCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-----R-ND----D----WDLICSPLKA--GAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-----~-~~----~----~~~l~~~l~~--~~~ 309 (1399)
. ........+.......-...+.+|++|+++.- . .. . ...+...+.. ...
T Consensus 254 ------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 0 01111122222222222456789999998431 0 00 1 1122222222 223
Q ss_pred CcEEEEEcCChhhHH-hc----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 310 GSKIIITTRDSSIAA-SM----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
+..||.||..++... .+ .-+..+.++.-+.++-.++|+.+.-.-.. ...-+ ...|++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 456666886654322 11 12356778777777777777665532211 11122 356777887753
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.62 E-value=0.0052 Score=68.05 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999984
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.62 E-value=0.019 Score=67.35 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=95.1
Q ss_pred CccccchhHHHHHHHHHhccCCC-----CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS-----SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLR 246 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~-----~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 246 (1399)
.+++|.++.++++.+.+..-..+ -+....+-|.|+|++|+|||+||+.+++. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 46899998777766654321100 00111233779999999999999999983 22222 33443322110
Q ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----------c----hhhhhhcccCC--CCCC
Q 040015 247 VTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----------D----DWDLICSPLKA--GARG 310 (1399)
Q Consensus 247 ~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----------~----~~~~l~~~l~~--~~~g 310 (1399)
+ ...........+.......+.+|+||++..-.. . ....+...+.. ...+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 001122333344444456788999999954211 0 12223222211 1245
Q ss_pred cEEEEEcCChhhHH-h-cC---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 311 SKIIITTRDSSIAA-S-MG---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 311 s~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
..||.||...+... . .. -...+.++..+.++-.+++..++-...- ....+ ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 66777777654322 1 11 1236778877777777777766532211 11112 345788888877
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.016 Score=65.76 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=92.6
Q ss_pred CccccchhHHHHHHHHHhcc---CC---CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVE---DD---SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|-++.+++|.+.+.-+ .+ .-+-...+=|.++|++|+|||.+|+++++. ....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 46789998888887766321 00 001123466889999999999999999983 33333 2333322111
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc----------ch----hhhhhcccC--CCCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN----------DD----WDLICSPLK--AGAR 309 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~----------~~----~~~l~~~l~--~~~~ 309 (1399)
. ...+....+.......-...+.+|++|+++.... .. ...+...+. ....
T Consensus 255 ------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 ------------K--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ------------S--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------c--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0 1111122222222223345689999999853210 01 111222221 1234
Q ss_pred CcEEEEEcCChhhHH-hc-C---ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 310 GSKIIITTRDSSIAA-SM-G---TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 310 gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
+..||.||...+... ++ . -+..+.++.-+.++-.++|..+.-.- ......+ ...|++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCC----HHHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCCC
Confidence 556677776554322 11 1 12456777666666677776665321 1111223 356677777753
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.55 E-value=0.0056 Score=69.50 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=82.9
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
.++|+++.++.+...+.... -+.++|.+|+|||++|+.+++. ....| ..+.+.......++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~---------~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~---- 89 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG---------HILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLI---- 89 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC---------CEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHH----
T ss_pred ceeCcHHHHHHHHHHHHcCC---------eEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcC----
Confidence 47899999999988886542 5779999999999999999873 22222 233333333333221
Q ss_pred HHccCCCCCCCcchHHHHHHHHHHhc-C--cceEEEecCCcCCCcchhhhhhcccCC-----------CCCCcEEEEEcC
Q 040015 253 KSVTSKPADVDDDLNLLQVCLREKLA-G--KKFLLVLDDVWSRRNDDWDLICSPLKA-----------GARGSKIIITTR 318 (1399)
Q Consensus 253 ~~l~~~~~~~~~~~~~l~~~l~~~l~-~--~r~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR 318 (1399)
.......... . . .+. + ...++++|++..-.......+...+.. ......|+.|+.
T Consensus 90 g~~~~~~~~~-~-~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 90 GTMIYNQHKG-N-F---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEEEETTTT-E-E---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred CceeecCCCC-c-e---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 1110000000 0 0 000 1 125899999976544444444333321 123445555655
Q ss_pred Chh------hHHh-cCccc-eEeCCCCCccchHHHHHHhhh
Q 040015 319 DSS------IAAS-MGTVA-AHHLECLAFEDCSSIFMNQAF 351 (1399)
Q Consensus 319 ~~~------v~~~-~~~~~-~~~l~~L~~~~~~~lf~~~a~ 351 (1399)
... +... ..... .+.+++.+.++-.+++.+.+.
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 221 1111 12222 588999998888888887764
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.41 E-value=0.0024 Score=71.09 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe
Q 040015 177 RENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV 238 (1399)
Q Consensus 177 r~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~ 238 (1399)
+...++.+.+++.... ......+.|+|..|+|||+||..+++.... ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~----~~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP----SAEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCS----CSSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhcc----ccCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3445556666665432 112457889999999999999999984320 22234555654
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.35 E-value=0.015 Score=68.91 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCc
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDS 224 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~ 224 (1399)
.++|++..++.+...+..+. -|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHHH
Confidence 47899999999888886543 57899999999999999999843
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.28 E-value=0.0085 Score=72.50 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+++|-+...+.+.+.+.-.. -.......++.++|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~-~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQK-LTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHH-HSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH-hcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457898888877766553211 001123568999999999999999999873
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.19 E-value=0.01 Score=62.68 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccC-----------CCCCCCcchHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTS-----------KPADVDDDLNL 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~~~~~~~~~~ 268 (1399)
..++.|+|.+|+||||+|..++. . .-..++|++....++..++.. +.+..+. ..........+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999987 1 124578888776556554433 3333221 11111111223
Q ss_pred HHHHHHHHhcCcceEEEecCCc
Q 040015 269 LQVCLREKLAGKKFLLVLDDVW 290 (1399)
Q Consensus 269 l~~~l~~~l~~~r~LlvlDdv~ 290 (1399)
....++.....+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 3444444444346688889874
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.16 E-value=0.0029 Score=68.97 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEe--CCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCV--SDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
.+++.|+|++|+|||+||.+++.. .-..++|+++ .+..+. . ..+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~-------~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------Y-------NTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------C-------BCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------h-------hcCHHHHHHHHHHHH
Confidence 457789999999999999999873 1124567777 332110 0 022566666666667
Q ss_pred cCcceEEEecCCc
Q 040015 278 AGKKFLLVLDDVW 290 (1399)
Q Consensus 278 ~~~r~LlvlDdv~ 290 (1399)
...+ +||+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6666 99999993
No 241
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.02 E-value=0.0096 Score=76.05 Aligned_cols=122 Identities=15% Similarity=0.228 Sum_probs=65.8
Q ss_pred CccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHH
Q 040015 172 SCVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTT 249 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 249 (1399)
..++|.+..++.+...+.....+ ........+.++|++|+|||++|+.+++.. . ...+.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~---- 528 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSS----
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchh----
Confidence 45899999999888887643200 011234578999999999999999998732 2 223444544322110
Q ss_pred HHHHHccCCCCCCCcchHHHHHHHHHHh-cCcceEEEecCCcCCCcchhhhhhcccC
Q 040015 250 TILKSVTSKPADVDDDLNLLQVCLREKL-AGKKFLLVLDDVWSRRNDDWDLICSPLK 305 (1399)
Q Consensus 250 ~i~~~l~~~~~~~~~~~~~l~~~l~~~l-~~~r~LlvlDdv~~~~~~~~~~l~~~l~ 305 (1399)
....+.+....... .++ ...+.+.+ +....+|+||++.....+..+.+...+.
T Consensus 529 -~~~~l~g~~~g~~g-~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 529 -TVSRLIGAPPGYVG-FDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp -CCSSSCCCCSCSHH-HHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred -hHhhhcCCCCCCcC-ccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 00011111111100 000 11122222 2345789999997766555655555543
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.014 Score=75.16 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=72.1
Q ss_pred ccccchhHHHHHHHHHhccCCC--CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHH
Q 040015 173 CVYGRENDKNAIVELLMVEDDS--SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTT 250 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 250 (1399)
.++|.+..++.+...+.....+ ........+.|+|+.|+|||++|+.+++... ..-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H---
Confidence 5799999999998888653200 0112346888999999999999999987321 111123445544322210 0
Q ss_pred HHHHccCCCCCC--CcchHHHHHHHHHHhcCcceEEEecCCcCCCcchhhhhhcccCCCC-----------CCcEEEEEc
Q 040015 251 ILKSVTSKPADV--DDDLNLLQVCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGA-----------RGSKIIITT 317 (1399)
Q Consensus 251 i~~~l~~~~~~~--~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTt 317 (1399)
...+.+..... .+....+...++. ...-+|+||++..-..+..+.+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 01111100000 0001122222221 234589999997766566666666554321 244477777
Q ss_pred CC
Q 040015 318 RD 319 (1399)
Q Consensus 318 R~ 319 (1399)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.81 E-value=0.047 Score=67.98 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=96.4
Q ss_pred CccccchhHHHHHHHHHhc----cCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMV----EDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.++.|-++.+++|.+++.- ++- .-+-...+-|.++|++|+|||+||+++++. ...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 4578888888887776532 110 001233567889999999999999999984 33332 3343321
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-------chh----hhhhcccCC--CCCCcE
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-------DDW----DLICSPLKA--GARGSK 312 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-------~~~----~~l~~~l~~--~~~gs~ 312 (1399)
+... ...+....+...+....+..+.+|++|+++.-.. +.- ..+...+.. ...+..
T Consensus 274 -----l~sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -----IMSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HHSS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----hhcc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1111 1111133344444444466789999999854210 111 112222211 123445
Q ss_pred EEEEcCChhh-HHhcC----ccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCchh
Q 040015 313 IIITTRDSSI-AASMG----TVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLLL 378 (1399)
Q Consensus 313 ilvTtR~~~v-~~~~~----~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 378 (1399)
||.||...+. -..+. -...++++.-+.++-.++|..+.-.... ....+ ...|++++.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCCH
Confidence 6667665432 22221 2346788777777777777665422111 11222 4567888887653
No 244
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.80 E-value=0.061 Score=58.57 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=78.1
Q ss_pred CccccchhHHHHHHHHHhccCC-------CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH
Q 040015 172 SCVYGRENDKNAIVELLMVEDD-------SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 244 (1399)
.++.|-++.+++|.+.+..+-. -+-..... +.++|++|+||||||+.++.... . ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhh
Confidence 4578888888887765531100 00011122 89999999999999999997322 1 2344433221110
Q ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc-----------chhhhhhcccCCC--CCCc
Q 040015 245 LRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN-----------DDWDLICSPLKAG--ARGS 311 (1399)
Q Consensus 245 ~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 311 (1399)
........+....+..-...+.++++|++..... .....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0000011111111221134567999999854210 0111122222222 1234
Q ss_pred EEEEEcCChhhHHhc-----CccceEeCCCCCccchHHHHHHhh
Q 040015 312 KIIITTRDSSIAASM-----GTVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 312 ~ilvTtR~~~v~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
-++.+|..+++.... .-...+.++..+.++-.+++....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 456677666543221 123567787777777777777654
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.63 E-value=0.031 Score=64.54 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHh----ccCC-------------------CCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLM----VEDD-------------------SSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~----~~~~-------------------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.+..++.|...+. .... .........+.++|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 357899998888887772 0000 000112346789999999999999999973
No 246
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.52 E-value=0.017 Score=54.52 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=32.9
Q ss_pred EEEecCCCCc--ccCcccCCCCCCcEEeccCCccccccc-cccCCCCCcEEEccCC
Q 040015 591 VLSFSACRIT--ALPDSVGDLKHLRYLDLSRTAIKQLPD-STGNLCNLQSIILLEC 643 (1399)
Q Consensus 591 ~L~Ls~~~i~--~lp~~i~~L~~L~~L~Ls~n~i~~lP~-~i~~L~~L~~L~L~~~ 643 (1399)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 6677777776 7775543 357777777777777765 3455666666666655
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.39 E-value=0.057 Score=68.58 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=83.3
Q ss_pred CccccchhHHHHHHHHHhcc---CC---CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 172 SCVYGRENDKNAIVELLMVE---DD---SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~---~~---~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
.+++|.+..+++|.+++... .. .-+-.....|.|+|.+|+||||||+.++.. ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 56899999999988887531 00 001123456889999999999999999873 22222 3333211
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcCCCc------c-----hhhhhhcccCCC--CCCcE
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSRRN------D-----DWDLICSPLKAG--ARGSK 312 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~ 312 (1399)
+ ... ........+...+.........++++|++..-.. . ....+...+... ..+..
T Consensus 274 -----l----~~~--~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 -----I----MSK--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----H----SSS--STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----h----hhh--hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 1 000 0111122333334444445678999999843210 0 011222222111 23445
Q ss_pred EEEEcCChhhH-HhcC----ccceEeCCCCCccchHHHHHHhh
Q 040015 313 IIITTRDSSIA-ASMG----TVAAHHLECLAFEDCSSIFMNQA 350 (1399)
Q Consensus 313 ilvTtR~~~v~-~~~~----~~~~~~l~~L~~~~~~~lf~~~a 350 (1399)
||.||....-. ..+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666654221 1111 12346677777777777777654
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.36 E-value=0.097 Score=57.34 Aligned_cols=52 Identities=27% Similarity=0.329 Sum_probs=34.1
Q ss_pred CCccccchhHHHHHHHHHhccCC------CCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 171 ESCVYGRENDKNAIVELLMVEDD------SSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-.+++|.+..++++.+....-.. -+-..... +.|+|+.|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 35689998777666655432110 00001122 889999999999999999974
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.35 E-value=0.0092 Score=62.17 Aligned_cols=113 Identities=12% Similarity=-0.029 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCC-CcchHHHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADV-DDDLNLLQVCLREKLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~l~~~l~~~l~ 278 (1399)
..++.|+|..|+||||++..+++. ...+-..++.+..... .+ ....++.+++...... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 578999999999999999988874 3233223444432221 11 1123344443322110 1123445555555444
Q ss_pred Ccce-EEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCCh
Q 040015 279 GKKF-LLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 279 ~~r~-LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
+.++ +||+|.+..-..+..+.+. .+.+ .|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 4445 9999999653333333332 2222 277899999854
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.12 E-value=0.051 Score=61.46 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
...++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 467999999999999999999886422211 224688999988877766543 445544
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.06 E-value=0.22 Score=56.41 Aligned_cols=157 Identities=10% Similarity=-0.022 Sum_probs=98.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHH-Hhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLRE-KLA 278 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~-~l~ 278 (1399)
.++..++|..|.||++.|..+.+... ...|+....+.+....+ ..++...+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCc
Confidence 56889999999999999999876321 12343221222222222 3333333322 234
Q ss_pred CcceEEEecCCcC-CCcchhhhhhcccCCCCCCcEEEEEcCC-------hhhHHhcC-ccceEeCCCCCccchHHHHHHh
Q 040015 279 GKKFLLVLDDVWS-RRNDDWDLICSPLKAGARGSKIIITTRD-------SSIAASMG-TVAAHHLECLAFEDCSSIFMNQ 349 (1399)
Q Consensus 279 ~~r~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 349 (1399)
+++-++|+|++.. -..+.++.+...+.....++.+|++|.. ..+...+. ...+++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5667888999865 4446777777777655567777766532 24444433 3467899999999988888776
Q ss_pred hhcCCCCCCCccHHHHHHHHHHHccCchhHHHHH
Q 040015 350 AFENRNTGISPDLETIGAEIVNKCEGLLLAVKRM 383 (1399)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 383 (1399)
+-..+- .-..+.+..+++.++|...++...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 643321 122356788999999998877653
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.03 E-value=0.04 Score=61.82 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l~ 274 (1399)
...++.|+|.+|+||||||.+++.... ..=..++|++....++.. .+++++..... ...+.++....++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999987422 222347888887777654 34455443211 1223556656666
Q ss_pred HHhc-CcceEEEecCCc
Q 040015 275 EKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 275 ~~l~-~~r~LlvlDdv~ 290 (1399)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 455689999983
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.85 E-value=0.1 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 254
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.80 E-value=0.099 Score=61.71 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=89.8
Q ss_pred CCccccchhHHHHHHHHHh---ccCC--CCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH
Q 040015 171 ESCVYGRENDKNAIVELLM---VEDD--SSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL 245 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~---~~~~--~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 245 (1399)
-.+++|.++.++++.+... .... .-+-.-.+-+.|+|++|+|||+||+.++... .. ..+.++.+.-...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHHh-
Confidence 3568999887766665543 2110 0000111238899999999999999999742 22 2334443321110
Q ss_pred HHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC----cceEEEecCCcCCC----------cchh----hhhhcccCCC
Q 040015 246 RVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG----KKFLLVLDDVWSRR----------NDDW----DLICSPLKAG 307 (1399)
Q Consensus 246 ~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~----~r~LlvlDdv~~~~----------~~~~----~~l~~~l~~~ 307 (1399)
. .......++..++. ...++++|++..-. .+.+ ..+...+..+
T Consensus 104 -------------~------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 -------------F------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------C------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------h------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 11112233333332 34799999985321 1111 2233223222
Q ss_pred --CCCcEEEEEcCChhhHHh-c----CccceEeCCCCCccchHHHHHHhhhcCCCCCCCccHHHHHHHHHHHccCch
Q 040015 308 --ARGSKIIITTRDSSIAAS-M----GTVAAHHLECLAFEDCSSIFMNQAFENRNTGISPDLETIGAEIVNKCEGLL 377 (1399)
Q Consensus 308 --~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 377 (1399)
..+..|+.||..+++... + .-...+.++..+.++-.+++..++-+. ....... ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 233456667766654321 1 123467888777777777877654221 1111111 345677777765
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.77 E-value=0.047 Score=61.83 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC----CCCcchHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----DVDDDLNLLQVCLRE 275 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~l~~~l~~ 275 (1399)
..++.|.|.+|+||||||.+++.... ..=..++|++....++.. .+++++.... ....+.+++...++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 45888999999999999999886422 222368999998877654 2444443221 011235666666666
Q ss_pred Hhc-CcceEEEecCCc
Q 040015 276 KLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 276 ~l~-~~r~LlvlDdv~ 290 (1399)
..+ ...-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 654 345689999983
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.76 E-value=0.062 Score=60.30 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHccCCCCC--------CCcchH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD--------VDDDLN 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~ 267 (1399)
..++.|+|.+|+||||+|.+++....... .-..++|++....++..++. ++++.++..... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999986422111 02468899988887776655 345555432110 001122
Q ss_pred ---HHHHHHHHHhc--CcceEEEecCC
Q 040015 268 ---LLQVCLREKLA--GKKFLLVLDDV 289 (1399)
Q Consensus 268 ---~l~~~l~~~l~--~~r~LlvlDdv 289 (1399)
++...+...++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 23334444443 34567888887
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.63 E-value=0.051 Score=58.26 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=37.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccc----cccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDG----RFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
..++.|+|.+|+||||||..++....... .-..++|+.....+...++ .+++++++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g 83 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYG 83 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcC
Confidence 46999999999999999999986321111 1356888887775555443 33444444
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.54 E-value=0.046 Score=61.65 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCLRE 275 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l~~ 275 (1399)
.+++.|.|.+|+||||||.+++.... ..=..++|++....++... +.+++..... ..++.+++...++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 56899999999999999999986422 2223688999988776432 3444432211 11124555555554
Q ss_pred Hhc-CcceEEEecCCc
Q 040015 276 KLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 276 ~l~-~~r~LlvlDdv~ 290 (1399)
..+ .+.-+||+|.+-
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 443 445689999973
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.53 E-value=0.059 Score=58.42 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=54.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHH-HHHHHHH
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLL-QVCLREK 276 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l-~~~l~~~ 276 (1399)
++-|.|.+|+||||||.+++.....+..=..++||+....++.. .+++++...+. ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999987642211012467899988888764 36667654321 12234554 3333332
Q ss_pred --h-cCcceEEEecCCc
Q 040015 277 --L-AGKKFLLVLDDVW 290 (1399)
Q Consensus 277 --l-~~~r~LlvlDdv~ 290 (1399)
+ .++.-+||+|-+-
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 2 3567799999983
No 260
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.47 E-value=0.059 Score=50.84 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=45.1
Q ss_pred cEEeccCCccc--cccccccCCCCCcEEEccCCCCCCCcChh-hccCCCCCEEEccCCccc
Q 040015 613 RYLDLSRTAIK--QLPDSTGNLCNLQSIILLECYSLSKLPTD-LGNLTGLRHLRMSGSRLR 670 (1399)
Q Consensus 613 ~~L~Ls~n~i~--~lP~~i~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~l~ 670 (1399)
.+++.+++.++ .+|..+. .+|++|+|++| .+..+|.. |..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 47888999998 8887543 46899999999 77788765 788999999999998653
No 261
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.46 E-value=0.021 Score=57.41 Aligned_cols=114 Identities=18% Similarity=0.064 Sum_probs=59.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc---cCHHHHHHHHHHHcc-------CCC-CCCCc-----
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ---FDVLRVTTTILKSVT-------SKP-ADVDD----- 264 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~-------~~~-~~~~~----- 264 (1399)
..|-|++-.|.||||.|-...-. ..++=-.+.++...+. .....++ +.+. ... ....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 34556666669999999888752 2222223455544332 2233333 3331 000 00100
Q ss_pred -chHHHHHHHHHHhcCcce-EEEecCCcC---CCcchhhhhhcccCCCCCCcEEEEEcCCh
Q 040015 265 -DLNLLQVCLREKLAGKKF-LLVLDDVWS---RRNDDWDLICSPLKAGARGSKIIITTRDS 320 (1399)
Q Consensus 265 -~~~~l~~~l~~~l~~~r~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 320 (1399)
.........++.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 012222334555544444 899999822 12233455555555555677899999985
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.44 E-value=0.059 Score=57.34 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC------------------
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD------------------ 261 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 261 (1399)
..+++|+|.+|+|||||++.++.... ..=..++|+.... ...++...+. +++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999999985322 1112466666543 3334433332 33221100
Q ss_pred ----CCcchHHHHHHHHHHhc-Ccce--EEEecCCcCC---CcchhhhhhcccCC--CCCCcEEEEEcCCh
Q 040015 262 ----VDDDLNLLQVCLREKLA-GKKF--LLVLDDVWSR---RNDDWDLICSPLKA--GARGSKIIITTRDS 320 (1399)
Q Consensus 262 ----~~~~~~~l~~~l~~~l~-~~r~--LlvlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 320 (1399)
...+..++...+.+.+. .+.- +||+|....- +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00124555555555443 2333 9999997521 22222333333221 12467888888865
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.38 E-value=0.055 Score=60.83 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccc---------cc-----cceEEEEeCCccCHHHHHHHHHHHccC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDG---------RF-----DLKVWVCVSDQFDVLRVTTTILKSVTS 257 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 257 (1399)
...++.|+|.+|+|||++|.+++.+..... .. ..++|++....++..++.. +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 357999999999999999999886421111 11 4688999988877776654 3455543
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.37 E-value=0.037 Score=57.27 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667888888887542 23468999999999999999999976
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.33 E-value=0.23 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.08 E-value=0.09 Score=57.76 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l 277 (1399)
..++++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.......+ ...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~-~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT-KEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS-HHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC-HHHHHHHHHH-h
Confidence 3579999999999999999999863221111 13445544321 22233333333333322211112 3444444443 3
Q ss_pred cCcceEEEecCC
Q 040015 278 AGKKFLLVLDDV 289 (1399)
Q Consensus 278 ~~~r~LlvlDdv 289 (1399)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457888843
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.06 E-value=0.22 Score=54.41 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccc-cccceEEEEeCCccCHHHHHHHH
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDG-RFDLKVWVCVSDQFDVLRVTTTI 251 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 251 (1399)
....+|+|+|..|+||||||+.+.......+ ....+..|+...-+-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4578999999999999999999876322111 12334444554433333444444
No 268
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.70 E-value=0.1 Score=58.89 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=54.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l~ 274 (1399)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++..... ...+.++....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 356899999999999999999986322 222468899988777653 24445432211 1123555555555
Q ss_pred HHhc-CcceEEEecCCc
Q 040015 275 EKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 275 ~~l~-~~r~LlvlDdv~ 290 (1399)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 345699999984
No 269
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.58 E-value=0.16 Score=56.10 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 175 YGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|-...+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~---~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP---EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC---CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC---CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555665555555443 234578999999999999999999875
No 270
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.53 E-value=0.57 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.41 E-value=0.22 Score=55.44 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=37.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
..++.|.|.+|+||||+|..++.+...++ ..++|++.. .+..++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 46899999999999999999986432222 567888765 45667777766543
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.37 E-value=0.053 Score=56.41 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=28.5
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
-+++|.+.+... .....+|+|+|..|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~-----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR-----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT-----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555555432 13468999999999999999999986
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.03 E-value=0.083 Score=58.74 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccc-ccccceEEEEeCCccCHHHHHHHHHHHccCC----CCCCCcchH----HHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVD-GRFDLKVWVCVSDQFDVLRVTTTILKSVTSK----PADVDDDLN----LLQ 270 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~~~~~~~~~----~l~ 270 (1399)
...++|+|..|+|||||++.+.+..... ..++ ++++-+++.... ..++.+.+... ..+...... ...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEE---VTEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4588999999999999999988632111 1232 345666654321 22333333210 011111011 111
Q ss_pred HHHHHHh--cCcceEEEecCC
Q 040015 271 VCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 271 ~~l~~~l--~~~r~LlvlDdv 289 (1399)
-.+.+++ +++.+||++||+
T Consensus 250 lt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEEeCc
Confidence 1122333 589999999998
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.68 E-value=0.16 Score=57.36 Aligned_cols=91 Identities=19% Similarity=0.233 Sum_probs=52.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccc----cceEEEEeCCccCHHHHHHHHHHHccCCCC-----------CCC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRF----DLKVWVCVSDQFDVLRVTTTILKSVTSKPA-----------DVD 263 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~~ 263 (1399)
...++.|+|..|+|||||+..++......... ..++|++....+...++ ..+++....... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46899999999999999999998632111111 23588887666544333 334444332110 000
Q ss_pred cchHHHHHHHHHHhc------CcceEEEecCCc
Q 040015 264 DDLNLLQVCLREKLA------GKKFLLVLDDVW 290 (1399)
Q Consensus 264 ~~~~~l~~~l~~~l~------~~r~LlvlDdv~ 290 (1399)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233344444443 456788999873
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.62 E-value=0.23 Score=52.47 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCcccc---c-cccceEEEEeCCccCH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVD---G-RFDLKVWVCVSDQFDV 244 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~ 244 (1399)
...+++|+|+.|+|||||++.++...... . .-..++|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 35799999999999999999997521111 1 1345778876554443
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.60 E-value=0.063 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999873
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.45 E-value=0.15 Score=54.88 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc-cCHHHHHHHHHH--HccCCCCCCCcchHHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ-FDVLRVTTTILK--SVTSKPADVDDDLNLLQVCLREK 276 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~l~~~l~~~ 276 (1399)
..+++|+|+.|+||||+++.+..- ....+...+++.-... +-.... ..+.. .++. + ...+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl------~-~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE------D-TKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------T-BSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC------C-HHHHHHHHHHH
Confidence 569999999999999999998762 1111223333321110 000000 00000 0000 0 12234566667
Q ss_pred hcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 277 LAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 277 l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
+..++=+|++|..-+ .+....+.... ..|.-|++||.+..+..
T Consensus 95 L~~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 95 LREDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HhhCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 766777899999852 22222222221 24667888888766443
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.40 E-value=0.11 Score=57.57 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 175 YGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 175 vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
|+-+.-.+++++.+...- ..+....|.|+|+.|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i---~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI---EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT---TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh---ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444556666777664322 123456789999999999999999987
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.35 E-value=0.22 Score=54.71 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHH--HHHHHHHHHccCCC---CCCCcchHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVL--RVTTTILKSVTSKP---ADVDDDLNLLQVCL 273 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~~l~~~l 273 (1399)
...+++|+|.+|+||||++..++.... ..=..+.++... .+... +-+...++..+... ....+........+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999986322 221234455443 23222 22233444433221 11112112223345
Q ss_pred HHHhcCcceEEEecCCc
Q 040015 274 REKLAGKKFLLVLDDVW 290 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~ 290 (1399)
...+..+.-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55455555588888663
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.34 E-value=0.054 Score=54.68 Aligned_cols=22 Identities=14% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 281
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.21 E-value=0.091 Score=60.18 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHhcc-------C-CCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVE-------D-DSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~-------~-~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|.+..++.+...+... . ........+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999988888310 0 0001113456889999999999999999973
No 282
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.15 E-value=0.066 Score=53.95 Aligned_cols=20 Identities=45% Similarity=0.723 Sum_probs=18.7
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 040015 201 SVVPIVGMGGIGKTTVAQLV 220 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v 220 (1399)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.10 E-value=0.061 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.10 E-value=0.063 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 285
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.05 E-value=2 Score=50.42 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=34.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
..++.|.|.+|+||||+|..++.+.... .=..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 4589999999999999999998743221 112577777654 3456666554
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.02 E-value=0.83 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.92 E-value=0.079 Score=53.55 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.82 E-value=0.095 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|+|+.|+||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873
No 289
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.78 E-value=0.27 Score=56.24 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=37.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccc----cccccceEEEEeCCccCHHHHHHHHHHHccC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRV----DGRFDLKVWVCVSDQFDVLRVTTTILKSVTS 257 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 257 (1399)
..++.|+|.+|+|||||+..++-.... ...-..++|++....+...++ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 569999999999999999976521111 112345889888776665543 335565553
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.76 E-value=0.079 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 291
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.69 E-value=0.15 Score=58.73 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=49.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCCC-----CCCCc--chHH----
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSKP-----ADVDD--DLNL---- 268 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~--~~~~---- 268 (1399)
+.++|+|..|+|||||+..+..+... ..-+..+++.+.+.. ...+++.++.+.-.... ....+ ....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 36889999999999999999874321 122455666666554 33344444433200000 00111 0111
Q ss_pred HHHHHHHHh---cCcceEEEecCCc
Q 040015 269 LQVCLREKL---AGKKFLLVLDDVW 290 (1399)
Q Consensus 269 l~~~l~~~l---~~~r~LlvlDdv~ 290 (1399)
..-.+.+++ +++++|+++||+.
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111233333 5789999999993
No 292
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.42 E-value=0.5 Score=52.49 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 182 NAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 182 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-++++.+..-. ....++|+|..|+|||+|++++++.
T Consensus 163 iraID~l~Pig------rGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPIG------KGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCCB------TTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhccccc------CCceEEEecCCCCChhHHHHHHHHH
Confidence 45666665432 3456789999999999999999874
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.36 E-value=0.12 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 294
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.35 E-value=0.38 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.|+|.+|+||||+|..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.34 E-value=0.98 Score=50.14 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....+++|+|+.|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999863
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.32 E-value=0.075 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.32 E-value=0.083 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 298
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.14 E-value=0.17 Score=54.52 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=32.8
Q ss_pred CccccchhHHHHHHHHHhccCC------CCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDD------SSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+++|.+..+.++.+....-.. -+-..... +.|+|+.|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4688988766666554432110 00001122 889999999999999999974
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.10 E-value=0.11 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 57999999999999999997654
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.05 E-value=0.1 Score=53.80 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 301
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.98 E-value=0.56 Score=55.38 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 178 ENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+.++.+...+.... +.+.|.|.+|+||||++..+...
T Consensus 31 ~~av~~~~~~i~~~~--------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK--------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHSSS--------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 344455555554432 38899999999999999998874
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.96 E-value=0.11 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999863
No 303
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.95 E-value=0.045 Score=61.76 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAG 279 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~ 279 (1399)
..+++|+|+.|+||||+.+.+... ........+ +.+.+..... .... .....+ .............+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q-~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQ-REVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCS-SSEEEE-EEBTTTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcc-ccceee-eeeccccCCHHHHHHHHhhh
Confidence 359999999999999999998762 111111222 2222221100 0000 000000 00000112344477888888
Q ss_pred cceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhHH
Q 040015 280 KKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIAA 324 (1399)
Q Consensus 280 ~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 324 (1399)
.+=+|++|..-+ .+.++.+.... ..|..|++||.....+.
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 889999999953 34444433332 24667999998766553
No 304
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.90 E-value=0.16 Score=55.64 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.89 E-value=0.11 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.88 E-value=0.13 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.82 E-value=0.6 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.75 E-value=0.12 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 309
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.72 E-value=0.034 Score=56.32 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=19.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999976665
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.72 E-value=0.39 Score=53.40 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
..++.|.|.+|+||||+|..++.+... .=..++|++.. .+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 458999999999999999999875322 11346676654 45667777776554
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.72 E-value=0.15 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.68 E-value=0.095 Score=54.19 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 313
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.66 E-value=0.16 Score=51.28 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=48.0
Q ss_pred cCCCCcccEEEecCC-CCcc-----cCcccCCCCCCcEEeccCCccc-----cccccccCCCCCcEEEccCCCCCCC---
Q 040015 583 LPRLKCLRVLSFSAC-RITA-----LPDSVGDLKHLRYLDLSRTAIK-----QLPDSTGNLCNLQSIILLECYSLSK--- 648 (1399)
Q Consensus 583 ~~~l~~Lr~L~Ls~~-~i~~-----lp~~i~~L~~L~~L~Ls~n~i~-----~lP~~i~~L~~L~~L~L~~~~~~~~--- 648 (1399)
...-+.|+.|+|+++ .|.. +-+.+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++| .++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 344566777777764 5542 3345555667777777777765 33444555566777777766 3321
Q ss_pred --cChhhccCCCCCEEEccCC
Q 040015 649 --LPTDLGNLTGLRHLRMSGS 667 (1399)
Q Consensus 649 --lP~~i~~L~~L~~L~l~~~ 667 (1399)
+-..+..-+.|++|+|+++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 2223344455666666543
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.66 E-value=0.1 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 315
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.66 E-value=0.11 Score=59.24 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=33.2
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.+..++.+........ ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~-------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG-------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG-------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC-------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999887766555444322 123789999999999999999873
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.62 E-value=0.11 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 317
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.61 E-value=0.13 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 318
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.61 E-value=1 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999863
No 319
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.59 E-value=0.66 Score=53.38 Aligned_cols=89 Identities=17% Similarity=0.284 Sum_probs=53.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCC------C-----CCCCcc-h
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSK------P-----ADVDDD-L 266 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~-----~~~~~~-~ 266 (1399)
..-++|+|..|+|||+|+++++++. .+.+-+.++++-+.+.. .+.++.+++.+.-... . ...++. .
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 4577999999999999999998742 12333567777777654 3456666666542221 1 011110 1
Q ss_pred -----HHHHHHHHHHh---cCcceEEEecCC
Q 040015 267 -----NLLQVCLREKL---AGKKFLLVLDDV 289 (1399)
Q Consensus 267 -----~~l~~~l~~~l---~~~r~LlvlDdv 289 (1399)
....-.+.+++ +++.+||++||+
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11122234444 478999999998
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.55 E-value=0.19 Score=57.36 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceE-EEEeCCccCHHHHHHHHHHHccCCCC---C--CCcchHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKV-WVCVSDQFDVLRVTTTILKSVTSKPA---D--VDDDLNLLQVCL 273 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~---~--~~~~~~~l~~~l 273 (1399)
..+++|+|+.|+||||+++.+... ........+ ++.. .... .+..... . ...+...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~--~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED--PIEY---------VFKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEES--SCCS---------CCCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecc--cHhh---------hhccCceEEEeeecCCCHHHHHHHH
Confidence 568999999999999999999762 111112233 3221 1100 0000000 0 000011234566
Q ss_pred HHHhcCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChhhH
Q 040015 274 REKLAGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSSIA 323 (1399)
Q Consensus 274 ~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 323 (1399)
+..+...+=+|++|.+-+ .+........ ...|..|+.|+....+.
T Consensus 203 ~~~L~~~pd~illdE~~d--~e~~~~~l~~---~~~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMRD--LETVETALRA---AETGHLVFGTLHTNTAI 247 (372)
T ss_dssp HHHTTSCCSEEEESCCCS--HHHHHHHHHH---HTTTCEEEECCCCCSHH
T ss_pred HHHhhhCcCEEEECCCCC--HHHHHHHHHH---HhcCCEEEEEECcchHH
Confidence 777777777999999953 2233222222 23466688888765543
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.52 E-value=0.13 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 322
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.47 E-value=0.099 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 323
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.46 E-value=2.4 Score=60.15 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=46.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGK 280 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~ 280 (1399)
+-|.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+.+.+-..+............ -.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~-------P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLL-------PKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEE-------EBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcccc-------CCCCCc
Confidence 356799999999999997776532 122 245677777777666655555444321100000000 000367
Q ss_pred ceEEEecCCcC
Q 040015 281 KFLLVLDDVWS 291 (1399)
Q Consensus 281 r~LlvlDdv~~ 291 (1399)
+.++.+||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 88899999643
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.45 E-value=0.15 Score=52.73 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 325
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.43 E-value=0.1 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.41 E-value=0.13 Score=50.65 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999873
No 327
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.40 E-value=0.19 Score=52.94 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 178 ENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 178 ~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
++..+.+...+... ...+|.|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~~-------~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH-------GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT-------TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555555332 3688999999999999999999874
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.38 E-value=0.17 Score=51.31 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+|.|.|++|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 329
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.36 E-value=0.13 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
++|.|.|+.|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 330
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.35 E-value=0.1 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 331
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.32 E-value=0.14 Score=56.59 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD 240 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 240 (1399)
+.+||+|.|=|||||||.|..++--. ...=..+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 57899999999999999988876522 11112356666653
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.32 E-value=0.14 Score=52.99 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 333
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.27 E-value=0.54 Score=51.53 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.19 E-value=0.14 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999863
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.18 E-value=0.15 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.15 E-value=0.13 Score=52.62 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 337
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.15 E-value=0.17 Score=64.28 Aligned_cols=53 Identities=25% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHHhccCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 171 ESCVYGRENDKNAIVELLMVEDDSS------SSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 171 ~~~~vGr~~~~~~l~~~L~~~~~~~------~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-.+++|.+..++.+.+.+....... +-...+.+.++|++|+|||+||+.+++.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 4567899999988888775321000 1123456789999999999999999983
No 338
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.04 E-value=0.18 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 339
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.93 E-value=0.11 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 340
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.92 E-value=0.093 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999876
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.87 E-value=0.12 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.83 E-value=0.14 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.80 E-value=0.14 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.78 E-value=0.17 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+||.|.|++|+||+|.|+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 345
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.78 E-value=0.14 Score=53.05 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999986
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.73 E-value=0.16 Score=51.51 Aligned_cols=24 Identities=13% Similarity=0.498 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 356899999999999999999986
No 347
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.72 E-value=1.2 Score=48.82 Aligned_cols=38 Identities=26% Similarity=0.129 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVS 239 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~ 239 (1399)
..+++++|.+|+||||++..++.... ..=..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 68999999999999999999986322 221235555543
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.71 E-value=0.16 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.69 E-value=0.16 Score=54.82 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 350
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.68 E-value=0.18 Score=55.80 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3468999999999999999999986
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.66 E-value=0.22 Score=52.17 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 176 GRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 176 Gr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+.++..+.+...+... ..++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~-------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES-------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH-------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc-------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455566666655433 3789999999999999999999874
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.58 E-value=0.17 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.57 E-value=0.11 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|.|.|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.51 E-value=0.27 Score=52.82 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK--SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC--CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC--cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334445444444321 234467899999999999999999986
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.47 E-value=0.18 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.45 E-value=0.26 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.45 E-value=0.2 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999986
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.44 E-value=0.17 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999999986
No 359
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.44 E-value=0.98 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++++|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999863
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.40 E-value=0.18 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999986
No 361
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.37 E-value=0.17 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.35 E-value=0.19 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 363
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.32 E-value=0.23 Score=50.07 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=27.8
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-+..+..++..- +....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~i------Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKGT------PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHTC------TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 356666666432 12346899999999999999998873
No 364
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.31 E-value=0.74 Score=57.41 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=58.2
Q ss_pred CCCccccchhHHHHHHHHHhccCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC
Q 040015 170 DESCVYGRENDKNAIVELLMVEDDS------SSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 170 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 243 (1399)
.-..+.|.++.+++|.+.+.-+-.. .+-...+-|.++|++|.|||.+|+++++.. ... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEecc---
Confidence 3456788888888887766432100 011223456799999999999999999842 222 233321
Q ss_pred HHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHhcCcceEEEecCCcC
Q 040015 244 VLRVTTTILKSVTSKPADVDDDLNLLQVCLREKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 244 ~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~ 291 (1399)
. +++....+ +....+.......-+..+.+|++|+++.
T Consensus 545 -~----~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 -P----ELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp -H----HHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred -c----hhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 12222111 1133333333334356789999999853
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.29 E-value=0.2 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|..|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 366
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.27 E-value=0.19 Score=55.39 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999999986
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.25 E-value=0.35 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 368
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.21 E-value=0.62 Score=53.85 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc-CHHHHHHHHHHHccCC-------CC-----CCCc--
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF-DVLRVTTTILKSVTSK-------PA-----DVDD-- 264 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~-----~~~~-- 264 (1399)
..-++|+|..|+|||+|+.+++++. .+.+-+.++++-+.+.. ...++.+++.+.-... .. ..++
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 4567999999999999999998742 12345678888887665 4556666666542221 00 0111
Q ss_pred ----chHHHHHHHHHHhc---CcceEEEecCC
Q 040015 265 ----DLNLLQVCLREKLA---GKKFLLVLDDV 289 (1399)
Q Consensus 265 ----~~~~l~~~l~~~l~---~~r~LlvlDdv 289 (1399)
......-.+.++++ ++.+|+++||+
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 01122333455553 57999999998
No 369
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.18 E-value=0.14 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.17 E-value=0.19 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.16 E-value=0.19 Score=54.04 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999976
No 372
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.13 E-value=0.18 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|+|+.|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 373
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.11 E-value=0.19 Score=57.92 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=36.3
Q ss_pred CccccchhHHHHHHHHHhcc-------CCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 172 SCVYGRENDKNAIVELLMVE-------DDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++|.++.++.+...+... .........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999998887777332 0000011235588999999999999999987
No 374
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.08 E-value=0.16 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.92 E-value=0.8 Score=53.24 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccC
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFD 243 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 243 (1399)
....+++|+|..|+|||||++.++.-.. . ....+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~--~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE--Q-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh--h-cCCeEEEecCcccc
Confidence 3467999999999999999999986322 1 23455554444443
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.90 E-value=0.16 Score=52.17 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 377
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.89 E-value=0.53 Score=49.81 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=46.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcC-ccccccc-cceEEEEeCCccCHHHHHHHHHHHccCCCCC--------------CC-
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYND-SRVDGRF-DLKVWVCVSDQFDVLRVTTTILKSVTSKPAD--------------VD- 263 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~-~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------------~~- 263 (1399)
+.+.|.|..|+||||++..+.-+ ....+.. ...+.+.........++.+.+...++..... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 37899999999999876655432 1111222 2234343443333444555555544332100 00
Q ss_pred ----cchHHHHHHHHHHhcCcceEEEecCCcC
Q 040015 264 ----DDLNLLQVCLREKLAGKKFLLVLDDVWS 291 (1399)
Q Consensus 264 ----~~~~~l~~~l~~~l~~~r~LlvlDdv~~ 291 (1399)
.+...+...+...+.+ --+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 1344555555543333 34789999965
No 378
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.89 E-value=0.18 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.80 E-value=0.2 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356999999999999999999986
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.80 E-value=0.2 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.55 E-value=0.19 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.54 E-value=0.14 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=16.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.46 E-value=0.24 Score=53.99 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 384
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.43 E-value=0.42 Score=54.21 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 181 KNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 181 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++.+.+.... ....+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~~-----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS-----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC-----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc-----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 3578999999999999999999875
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.40 E-value=0.42 Score=48.87 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.40 E-value=0.2 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 387
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.38 E-value=0.18 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 388
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.24 E-value=0.32 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999975
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.14 E-value=0.28 Score=60.23 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 172 SCVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 172 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999998888877543 37899999999999999999873
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.08 E-value=0.22 Score=51.94 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.03 E-value=0.71 Score=63.03 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l~ 274 (1399)
..+++.|+|++|+|||+||.++..... .+=..++|+++.+.++... ++.++.+... ..+..++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 356899999999999999999987432 2223578888888877655 4444422111 1122445555555
Q ss_pred HHhc-CcceEEEecCCc
Q 040015 275 EKLA-GKKFLLVLDDVW 290 (1399)
Q Consensus 275 ~~l~-~~r~LlvlDdv~ 290 (1399)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 566799999983
No 392
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.98 E-value=0.3 Score=49.36 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred ccCccceeccCCC-CCCcccccccccccccccCCCCcccEEEecCCCCcc-----cCcccCCCCCCcEEeccCCccc---
Q 040015 553 EAECLRTFLPLDP-TGEIGVSYLADRVPRDILPRLKCLRVLSFSACRITA-----LPDSVGDLKHLRYLDLSRTAIK--- 623 (1399)
Q Consensus 553 ~~~~Lr~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~Ls~n~i~--- 623 (1399)
.-+.|+.|.+.++ .+ +.. .....-..+..-..|+.|+|++|.|.. |-+.+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~i--gd~--ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRV--SKE--RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSS--CHH--HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred cCCCccEEECCCCCCC--CHH--HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4456777777653 21 000 001112334566889999999999873 3445556688999999999987
Q ss_pred --cccccccCCCCCcEEEccCCCC--CC-----CcChhhccCCCCCEEEccCCcc
Q 040015 624 --QLPDSTGNLCNLQSIILLECYS--LS-----KLPTDLGNLTGLRHLRMSGSRL 669 (1399)
Q Consensus 624 --~lP~~i~~L~~L~~L~L~~~~~--~~-----~lP~~i~~L~~L~~L~l~~~~l 669 (1399)
.+-+++..-+.|++|+|++|.. ++ .+-..+..=+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4555677777899999987622 22 2334456678899999887653
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.95 E-value=0.24 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 394
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.94 E-value=1.1 Score=54.27 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=53.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCCCCcchHHHHHHHHHHh---
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPADVDDDLNLLQVCLREKL--- 277 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~l~~~l--- 277 (1399)
+++.|.|.+|+||||++..+....... ...+.+......- ...+.+.++.. ..++..+.......+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~A----a~~L~e~~~~~----a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKA----ARRLGEVTGRT----ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHH----HHHHHHHHTSC----EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHH----HHHhHhhhccc----HHHHHHHHcCCcchhhhh
Confidence 488899999999999999988632211 1234444432222 22222222211 001111110000000
Q ss_pred ---cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCC
Q 040015 278 ---AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRD 319 (1399)
Q Consensus 278 ---~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 319 (1399)
..+--+||+|.+...+...+..+...++ .+.++|+.--.
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 0123489999997665556666666554 46677765443
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.79 E-value=0.27 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 396
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.76 E-value=2.3 Score=50.09 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCCC--CCCCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 181 KNAIVELLMVEDDSS--SSNNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 181 ~~~l~~~L~~~~~~~--~~~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.+.+......- .....++|+|+|.+|+||||++..++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555554322110 124578999999999999999999985
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.68 E-value=0.22 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.67 E-value=0.29 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+||||+++.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999999986
No 399
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.63 E-value=0.81 Score=53.07 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+|.|+|++|+||||+|+.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999873
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.49 E-value=0.26 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.48 E-value=0.24 Score=50.18 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+++|+|..|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999863
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.40 E-value=0.15 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.39 E-value=0.21 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.27 E-value=0.33 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.26 E-value=0.26 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 406
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.26 E-value=0.34 Score=53.35 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999997
No 407
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.19 E-value=0.6 Score=54.01 Aligned_cols=86 Identities=26% Similarity=0.308 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCcccccccc-ceEEEEeCCcc-CHHHHHHHHHHHccCCC-----CCCCcc-hHH--
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFD-LKVWVCVSDQF-DVLRVTTTILKSVTSKP-----ADVDDD-LNL-- 268 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~-~~~-- 268 (1399)
..-++|+|..|+|||+|| ..+++.. +-+ .++++-+++.. .+.++.+++.+.-.... ...++. ...
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 456789999999999995 5777742 234 34667777654 34455555554211111 011110 111
Q ss_pred ---HHHHHHHHh--cCcceEEEecCC
Q 040015 269 ---LQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 269 ---l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
....+.+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112344444 578999999998
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.18 E-value=0.3 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 409
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.06 E-value=1.6 Score=51.20 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
..++.|.|.+|+||||+|..++.+...+ .=..++|++... +..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 4689999999999999999998743221 113577777654 4556776665443
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.00 E-value=0.32 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.00 E-value=0.23 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.97 E-value=0.28 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.94 E-value=0.3 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 414
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.91 E-value=0.22 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHh-c
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVY-N 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~-~ 222 (1399)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 415
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.85 E-value=0.47 Score=54.22 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=50.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCcccccccc----ceEEEEeCCcc-CHHHHHHHHHHHccCC-------CCCCCcch--
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD----LKVWVCVSDQF-DVLRVTTTILKSVTSK-------PADVDDDL-- 266 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 266 (1399)
.-++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. .+.++.+++.+.-... ..+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34689999999999999999985432 222 55666666543 4455555554431010 01111101
Q ss_pred --HHHHHHHHHHhc---CcceEEEecCC
Q 040015 267 --NLLQVCLREKLA---GKKFLLVLDDV 289 (1399)
Q Consensus 267 --~~l~~~l~~~l~---~~r~LlvlDdv 289 (1399)
......+.++++ ++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112223455553 78999999998
No 416
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.80 E-value=0.33 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999863
No 417
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.69 E-value=0.78 Score=53.07 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCccccccccc-eEEEEeCCcc-CHHHHHHHHHHHccCC-------CCCCCcchH--
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFDL-KVWVCVSDQF-DVLRVTTTILKSVTSK-------PADVDDDLN-- 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-- 267 (1399)
..-++|+|..|+|||+|| ..+++.. .-+. ++++-+++.. .+.++.+++.+.=... ..+......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999995 5777743 2343 4667777654 3445555554421110 011111011
Q ss_pred --HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 --LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 --~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+.+++ +++.+||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1122344444 578999999998
No 418
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.62 E-value=1.3 Score=51.66 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKS 254 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 254 (1399)
..++.|.|.+|+||||+|..++.+...++ ..++|++... +..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHHH
Confidence 45899999999999999999987533221 2567766554 344566655544
No 419
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.61 E-value=0.39 Score=54.87 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccc--------cccc-ceEEEEeCCcc-CHHHHHHHHHHHccCC-------CCCC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVD--------GRFD-LKVWVCVSDQF-DVLRVTTTILKSVTSK-------PADV 262 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~ 262 (1399)
..-++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++.+++.+.-... ..+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3456899999999999999998854431 1111 45666666543 3445555544321000 0111
Q ss_pred Ccch----HHHHHHHHHHhc---CcceEEEecCC
Q 040015 263 DDDL----NLLQVCLREKLA---GKKFLLVLDDV 289 (1399)
Q Consensus 263 ~~~~----~~l~~~l~~~l~---~~r~LlvlDdv 289 (1399)
.... ....-.+.++++ ++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1101 112223455553 78999999998
No 420
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.57 E-value=0.31 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999999883
No 421
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.56 E-value=2.5 Score=51.48 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.56 E-value=0.7 Score=50.94 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccccccc-ceEEEEeCCccCHHHHHHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD-LKVWVCVSDQFDVLRVTTTILK 253 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 253 (1399)
..+++|+|.+|+|||||++.++...... -. .++|+.... ...++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 4599999999999999999998743221 12 456665443 34444444443
No 423
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.47 E-value=0.47 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999985
No 424
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.41 E-value=0.35 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.37 E-value=0.32 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 426
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.35 E-value=0.34 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999986
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.31 E-value=0.32 Score=50.35 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.25 E-value=0.57 Score=49.19 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999874
No 429
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=86.23 E-value=0.29 Score=55.68 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=32.1
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|....+.++...+..-. .... .|.|+|.+|+||+++|+.+.+.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----~~~~-~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----KSKA-PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----TSCS-CEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh----ccch-hheEEeCCCchHHHHHHHHHHh
Confidence 47787777766666554322 1122 3568999999999999999864
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.17 E-value=0.37 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999987
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=86.14 E-value=0.59 Score=51.84 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCcc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQF 242 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 242 (1399)
...++|+|+|-||+||||+|..++.... ..=..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCC
Confidence 4578999999999999999998876322 211246666665433
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.12 E-value=0.41 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 56999999999999999999975
No 433
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.05 E-value=0.36 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46999999999999999999986
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.98 E-value=0.9 Score=46.29 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHH
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTIL 252 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 252 (1399)
.|+|-|..|+||||.++.+++. .+..-..+++..-.......+..++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 3678899999999999999873 333322344444333333334444444
No 435
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.97 E-value=0.4 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...+++|+|..|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999986
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.97 E-value=0.27 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..|.|.|+.|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 437
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.97 E-value=0.56 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999987
No 438
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.97 E-value=2 Score=51.28 Aligned_cols=53 Identities=8% Similarity=-0.050 Sum_probs=37.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSV 255 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 255 (1399)
..++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 4688999999999999999998743222 113577877655 4567777665543
No 439
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.96 E-value=0.44 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4568889999999999999999985
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.78 E-value=0.37 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.60 E-value=0.39 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999986
No 442
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.42 E-value=1.3 Score=60.55 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=57.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCCC----CCcchHHHHHHHH
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPAD----VDDDLNLLQVCLR 274 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~l~~~l~ 274 (1399)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++... ++.++..... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 356999999999999999999987432 2223688998888776542 4555543221 1223666666666
Q ss_pred HHh-cCcceEEEecCCcC
Q 040015 275 EKL-AGKKFLLVLDDVWS 291 (1399)
Q Consensus 275 ~~l-~~~r~LlvlDdv~~ 291 (1399)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 554 34566999999843
No 443
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=85.26 E-value=0.35 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.24 E-value=0.38 Score=50.43 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.24 E-value=0.42 Score=51.30 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.20 E-value=0.43 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.20 E-value=0.41 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.10 E-value=0.49 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhc
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999986
No 449
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.09 E-value=0.43 Score=51.56 Aligned_cols=23 Identities=48% Similarity=0.629 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 450
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=85.09 E-value=1.9 Score=50.35 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCH-HHHHHH
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDV-LRVTTT 250 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 250 (1399)
...++|.|..|+|||+|++++++. .+-+.++++-+.+.... .++.++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 457799999999999999999873 22356788888876553 334333
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.08 E-value=0.38 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 452
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.04 E-value=0.41 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|+|.|..|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3467999999999999999999887
No 453
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.02 E-value=0.23 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.02 E-value=0.53 Score=46.48 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.01 E-value=0.41 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 040015 202 VVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999986
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.99 E-value=0.42 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45999999999999999999986
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.98 E-value=0.42 Score=48.29 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999873
No 458
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.97 E-value=0.42 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
...|.|.|+.|+||||+|+.+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 459
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.83 E-value=0.44 Score=50.68 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 460
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.79 E-value=0.45 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.78 E-value=0.44 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 56899999999999999999986
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.73 E-value=0.46 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 463
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.63 E-value=0.49 Score=47.44 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.+.|.|.|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999999999873
No 464
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=84.58 E-value=1.6 Score=51.02 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 183 AIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 183 ~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
++++.|..- .....++|.|..|+|||+|+.++++.. +-+.++++-+.+.
T Consensus 221 rvID~l~Pi------grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTFFPV------TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHHSCC------BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred hhhhccCCc------cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 345555433 234578999999999999999998742 2356777777765
No 465
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=84.57 E-value=0.61 Score=53.67 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccccc--ccceEEEEeCCcc-CHHHHHHHHHHHccCCC-------CCCCcc----
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGR--FDLKVWVCVSDQF-DVLRVTTTILKSVTSKP-------ADVDDD---- 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~---- 265 (1399)
..-++|.|..|+|||+|+.+++++...... =+.++++-+.+.. .+.++.+++.+.=.... .+....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 345678899999999999999985433111 1356666666543 44556666654311110 111110
Q ss_pred hHHHHHHHHHHh---cCcceEEEecCC
Q 040015 266 LNLLQVCLREKL---AGKKFLLVLDDV 289 (1399)
Q Consensus 266 ~~~l~~~l~~~l---~~~r~LlvlDdv 289 (1399)
.....-.+.+++ +++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111222344444 478999999997
No 466
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=84.55 E-value=1.2 Score=51.71 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCccc----ccccc-ceEEEEeCCcc-CHHHHHHHHHHHccCC-------CCCCCcc
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRV----DGRFD-LKVWVCVSDQF-DVLRVTTTILKSVTSK-------PADVDDD 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~ 265 (1399)
..-++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+++.. .+.++.+++.+.-... ..+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 446789999999999995 566664321 01234 36677777654 3445555554421110 0111110
Q ss_pred hH----HHHHHHHHHh--cCcceEEEecCC
Q 040015 266 LN----LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 266 ~~----~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.. .....+-+++ +++.+||++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 11 1122344444 578999999998
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.45 E-value=1.2 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 468
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.41 E-value=1.1 Score=46.14 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=24.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD 240 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 240 (1399)
.|.+.|.||+||||+|..++.... +..++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCC
Confidence 467889999999999988887432 22233 44555544
No 469
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.32 E-value=0.48 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 470
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.31 E-value=0.48 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.29 E-value=0.72 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 472
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.23 E-value=0.87 Score=52.75 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCcccccccc-ceEEEEeCCccC-HHHHHHHHHHHccCC-------CCCCCc----c
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFD-LKVWVCVSDQFD-VLRVTTTILKSVTSK-------PADVDD----D 265 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~~~~~----~ 265 (1399)
..-++|+|..|+|||+|| ..+++.. .-+ .++++-+++... +.++.+++.+.=... ..+... .
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 446789999999999995 5777743 234 346777776543 334444333211000 001111 0
Q ss_pred hHHHHHHHHHHh--cCcceEEEecCC
Q 040015 266 LNLLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 266 ~~~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.......+.+++ +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111222233333 589999999998
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.18 E-value=0.48 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.16 E-value=0.51 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhc
Q 040015 198 NNVSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 198 ~~~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4466899999999999999999986
No 475
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.16 E-value=3.4 Score=43.47 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=48.1
Q ss_pred EEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCC--------CCCCC----cchHHHH
Q 040015 203 VPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSK--------PADVD----DDLNLLQ 270 (1399)
Q Consensus 203 v~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~~~----~~~~~l~ 270 (1399)
+.|+|..|.|||.+|..++... . ..++++ +....-..+..+++.+ ++.. ..... .+.+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 6788999999999998887632 1 223444 3222112222232222 2111 00000 0123333
Q ss_pred HHHHHHhcCcceEEEecCCcCCCcchhhhhhccc
Q 040015 271 VCLREKLAGKKFLLVLDDVWSRRNDDWDLICSPL 304 (1399)
Q Consensus 271 ~~l~~~l~~~r~LlvlDdv~~~~~~~~~~l~~~l 304 (1399)
.... .+.++--+||+|++..-....+..+...+
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTC
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhc
Confidence 3332 33344569999999765555666665544
No 476
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.09 E-value=0.57 Score=49.94 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSD 240 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 240 (1399)
..++.|.|.+|+||||+|.+++.... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 45899999999999999988875321 1223577777654
No 477
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.99 E-value=0.48 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=83.98 E-value=0.5 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 479
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=83.79 E-value=0.51 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999987
No 480
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.77 E-value=0.86 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|+.|+|||||++.++.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56999999999999999999986
No 481
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.69 E-value=0.58 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcC
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.66 E-value=1.3 Score=59.68 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC----CCCcchHHHHHHHHHH
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA----DVDDDLNLLQVCLREK 276 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~l~~~l~~~ 276 (1399)
+++.|.|.+|+||||||.+++. .....=..++|++....++... ++.++.... ...++.+++...++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-cCcceEEEecCC
Q 040015 277 L-AGKKFLLVLDDV 289 (1399)
Q Consensus 277 l-~~~r~LlvlDdv 289 (1399)
. ..+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 483
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.65 E-value=1 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457789999999999999999874
No 484
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=83.54 E-value=2.5 Score=48.29 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=32.8
Q ss_pred ccccchhHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|....++++.+.+..-. .....| .|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a----~~~~~v-li~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS----CAECPV-LITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----TCCSCE-EEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc----CCCCCe-EEecCCCcCHHHHHHHHHHh
Confidence 35666667777776665432 123444 89999999999999999863
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.40 E-value=1.1 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 486
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.37 E-value=0.91 Score=48.15 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 180 DKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 180 ~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-...+..|+.... +....|.++|++|+|||.+|..+++.
T Consensus 89 ~~~~l~~~l~~~~-----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKF-----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCS-----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3455677775432 23456899999999999999999873
No 487
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=83.29 E-value=0.54 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999864
No 488
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=83.15 E-value=2.9 Score=48.29 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhcCcccccccc-ceEEEEeCCcc-CHHHHHHHHHHHccCCC-------CCCCcchH--
Q 040015 200 VSVVPIVGMGGIGKTTVA-QLVYNDSRVDGRFD-LKVWVCVSDQF-DVLRVTTTILKSVTSKP-------ADVDDDLN-- 267 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-- 267 (1399)
..-++|.|..|+|||+|| ..+.+. .+-+ .++++-+++.. .+.++.+++.+.-.... .+......
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 446789999999999996 567663 2233 35677777654 34455555444311111 01111011
Q ss_pred --HHHHHHHHHh--cCcceEEEecCC
Q 040015 268 --LLQVCLREKL--AGKKFLLVLDDV 289 (1399)
Q Consensus 268 --~l~~~l~~~l--~~~r~LlvlDdv 289 (1399)
.....+-+++ +++.+||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1112233444 589999999998
No 489
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=83.08 E-value=3 Score=52.45 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhccCCCCCCCCcEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHcc
Q 040015 179 NDKNAIVELLMVEDDSSSSNNVSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVT 256 (1399)
Q Consensus 179 ~~~~~l~~~L~~~~~~~~~~~~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 256 (1399)
...+.|...+... .++.|+|..|.||||++..+.........-...+.+.+....-..++...+...++
T Consensus 97 ~q~~~i~~~l~~~---------~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 97 AQRDEFLKLYQNN---------QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp GGHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC---------CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 3455666666543 37899999999999966655432111111123344444333223344444555443
No 490
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.93 E-value=0.87 Score=45.43 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 199 NVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 199 ~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
....|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 491
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=82.68 E-value=0.44 Score=58.06 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=31.4
Q ss_pred ccccchhHHHHHHHHHhccCCCC-CC---CCcEEEEEEcCCCchHHHHHHHHhcC
Q 040015 173 CVYGRENDKNAIVELLMVEDDSS-SS---NNVSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 173 ~~vGr~~~~~~l~~~L~~~~~~~-~~---~~~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
.++|.+..++.+.-.+....... .+ ..-.-|.++|.+|+|||+||+.+++.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 46777776666654443321000 00 00014789999999999999999874
No 492
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.63 E-value=0.7 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..+++|+|..|+|||||.+.+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 56999999999999999999987
No 493
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.49 E-value=0.6 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhc
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
..++.|+|.+|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45999999999999999999885
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.38 E-value=0.62 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
..+++|+|..|+|||||.+.++.-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 469999999999999999999863
No 495
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=82.30 E-value=0.64 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYN 222 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~ 222 (1399)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 496
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=82.24 E-value=1.3 Score=45.15 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCccCHHHHHHHHHHHccCCCC--CCCcchHHHHHHHHHHh
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQFDVLRVTTTILKSVTSKPA--DVDDDLNLLQVCLREKL 277 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~l~~~l~~~l 277 (1399)
..+..++|.-|.||||.|...+.+...+ ... ++.+.... +.+.-...+...++.... ...+ .++ +.+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~k-Vli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~-~~~----~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQH-AIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSA-SKD----IFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCC-EEEEECC-------------------CCEEECSS-GGG----GGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCE-EEEEEecc--CCcchHHHHHhhcCCeeEEeecCC-HHH----HHHHH
Confidence 5788899999999999998887743222 222 33333221 111112234444433221 1111 111 12222
Q ss_pred cCcceEEEecCCcCCCcchhhhhhcccCCCCCCcEEEEEcCChh
Q 040015 278 AGKKFLLVLDDVWSRRNDDWDLICSPLKAGARGSKIIITTRDSS 321 (1399)
Q Consensus 278 ~~~r~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 321 (1399)
.++--+|++|.+..-..+..+.+. .+.+ .|-.||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 233349999998654434443332 2222 3678999999643
No 497
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=82.21 E-value=1 Score=48.76 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=27.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcCccccccccceEEEEeCCc
Q 040015 201 SVVPIVGMGGIGKTTVAQLVYNDSRVDGRFDLKVWVCVSDQ 241 (1399)
Q Consensus 201 ~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 241 (1399)
++|+|.|-||+||||+|..++.... ..=..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCC
Confidence 5788899999999999998886322 22124566666543
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.01 E-value=0.67 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
...|.|.|..|+||||+++.+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 499
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.93 E-value=0.61 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcC
Q 040015 202 VVPIVGMGGIGKTTVAQLVYND 223 (1399)
Q Consensus 202 vv~I~G~gG~GKTtLa~~v~~~ 223 (1399)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 500
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.85 E-value=4.9 Score=51.15 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhcCcccccccc---ceEEEEeCCc-------cCH-----------HHHHHHHHHHccCC
Q 040015 200 VSVVPIVGMGGIGKTTVAQLVYNDSRVDGRFD---LKVWVCVSDQ-------FDV-----------LRVTTTILKSVTSK 258 (1399)
Q Consensus 200 ~~vv~I~G~gG~GKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~-------~~~-----------~~~~~~i~~~l~~~ 258 (1399)
..+++|+|..|+|||||.+.+..- .+.+ ++ ..-.+.+.+. .++ .+-..++++.++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 458999999999999999999831 1110 10 0001222221 111 22334556665542
Q ss_pred C------CCCCcchHHHHHHHHHHhcCcceEEEecCCcCC-CcchhhhhhcccCCCCCCcEEEEEcCChhhHHhcC
Q 040015 259 P------ADVDDDLNLLQVCLREKLAGKKFLLVLDDVWSR-RNDDWDLICSPLKAGARGSKIIITTRDSSIAASMG 327 (1399)
Q Consensus 259 ~------~~~~~~~~~l~~~l~~~l~~~r~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 327 (1399)
. ...-+.-+...-.|.+.+-.++=+|+||.--.. +...-..+...+.. .|..||++|.+...+..+.
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 1 011111222333455566677789999986332 11222333333433 3667999998877665543
Done!