BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040019
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 21 RRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLRLQVKVL 65
RR+ I D +L++ VPS K RA +LD+ +Y++++R +V L
Sbjct: 15 RRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTL 61
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 21 RRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLR 59
RR+ I D +L++ VPS K RA +LD+ +Y++++R
Sbjct: 12 RRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMR 52
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 21 RRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLR 59
RR+ I D +L++ VPS K RA +LD+ +Y++++R
Sbjct: 13 RRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMR 53
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 21 RRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLR 59
RR+ I D +L++ VPS K RA +LD+ +Y++++R
Sbjct: 14 RRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMR 54
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna
Complex: New Insights Into Mechanisms Of
Transcriptional Control
Length = 80
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 21 RRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLR 59
RR+ I D +L++ VPS K RA +LD+ +Y++++R
Sbjct: 23 RRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMR 63
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ A++M DIG A+QFL S + + + +Y +++ DA
Sbjct: 107 TEREAAEIMR-DIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDA 149
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ A++M DIG A+QFL S + + + +Y +++ DA
Sbjct: 126 TEREAAEIMR-DIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDA 168
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 29.6 bits (65), Expect = 0.77, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 89 LEGESIDGG---------SSQPEWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSK 133
L G DGG S P + W++ G Q A L E++ A M+FL +
Sbjct: 25 LVGRGGDGGEPSQLPHCPSVSPSAQPWTHPGQSQLFADLSREELTAVMRFLTQR 78
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 98 SSQPEWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSK 133
S P + W++ G Q A L E++ A M+FL +
Sbjct: 15 SVSPSAQPWTHPGQSQLFADLSREELTAVMRFLTQR 50
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 98 SSQPEWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSK 133
S P + W++ G Q A L E++ A M+FL +
Sbjct: 28 SVSPSAQPWTHPGQSQLFADLSREELTAVMRFLTQR 63
>pdb|3TCF|A Chain A, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|B Chain B, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|C Chain C, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|D Chain D, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|E Chain E, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|F Chain F, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|G Chain G, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCF|H Chain H, Crystal Structure Of E. Coli Oppa Complexed With
Endogenous Ligands
pdb|3TCG|A Chain A, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|B Chain B, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|C Chain C, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|D Chain D, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|E Chain E, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|F Chain F, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|G Chain G, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCG|H Chain H, Crystal Structure Of E. Coli Oppa Complexed With The
Tripeptide Kge
pdb|3TCH|A Chain A, Crystal Structure Of E. Coli Oppa In An Open Conformation
Length = 524
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 95 DGGS-SQPEWEKWSNDGTEQQVAKLMEE 121
DG +QPEW WS + ++ KL+ E
Sbjct: 324 DGAKLTQPEWFGWSQEKRNEEAKKLLAE 351
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 9 QQMFSLFFVVQLRRERIADRMRALQELVPSCNKTD----RAAMLDEIVDYVKFL 58
Q+ + + + RR I DR++ L L+P N D + +L VDY++ L
Sbjct: 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL 79
>pdb|1OLA|A Chain A, The Structural Basis Of Multispecificity In The
Oligopeptide-binding Protein Oppa
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With Tri-
Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys- Lys-Ala
pdb|1JEV|A Chain A, Oligo-peptide Binding Protein (oppa) Complexed With Kwk
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl-Lysine
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Diaminopropanoic Acid-Lysine
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1RKM|A Chain A, Structure Of Oppa
Length = 517
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 100 QPEWEKWSNDGTEQQVAKLMEE 121
+PEW KWS ++ KL+ E
Sbjct: 329 EPEWFKWSQQKRNEEAKKLLAE 350
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 22 RERIADRMRALQELVPSCN-KTDRAAMLDEIVDYVKFL 58
R I D++ L++LV K +++A+L + +DY++FL
Sbjct: 18 RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFL 55
>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor
6-(5-(2-Aminopyrimidin-4-Ylamino)-2-
Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide
Length = 320
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 113 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 155
>pdb|2OZA|A Chain A, Structure Of P38alpha Complex
Length = 356
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 115 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 157
>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With
A Potent 3-Aminopyrazole Atp Site Inhibitor
pdb|3M2W|A Chain A, Crystal Structure Of Mapkak Kinase 2 (Mk2) Complexed With
A Spiroazetidine-Tetracyclic Atp Site Inhibitor
pdb|3M42|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With
A Tetracyclic Atp Site Inhibitor
Length = 299
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 115 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 157
>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
Length = 406
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 165 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 207
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
pdb|1NY3|A Chain A, Crystal Structure Of Adp Bound To Map Kap Kinase 2
Length = 400
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 159 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 201
>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1
pdb|3R30|A Chain A, Mk2 Kinase Bound To Compound 2
Length = 319
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 114 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 156
>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|B Chain B, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|C Chain C, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|D Chain D, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|E Chain E, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|F Chain F, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|G Chain G, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|H Chain H, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|I Chain I, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|J Chain J, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|K Chain K, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|L Chain L, Mk2 Kinase Bound To Compound 5b
Length = 318
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 113 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 155
>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To
Mapkap Kinase-2
pdb|3FYJ|X Chain X, Crystal Structure Of An Optimzied Benzothiophene Inhibitor
Bound To Mapkap Kinase-2 (Mk-2)
pdb|3FYK|X Chain X, Crystal Structure Of A Benzthiophene Lead Bound To Mapkap
Kinase-2 (Mk-2)
Length = 327
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 115 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 157
>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal
Form-1, Soaking)
pdb|2JBP|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|B Chain B, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|C Chain C, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|D Chain D, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|E Chain E, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|F Chain F, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|G Chain G, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|H Chain H, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|I Chain I, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|J Chain J, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|K Chain K, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|L Chain L, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
Length = 326
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 121 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 163
>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|B Chain B, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|C Chain C, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|D Chain D, Structure Of Mk2 Complexed With Compound 76
pdb|3KC3|A Chain A, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|B Chain B, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|C Chain C, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|D Chain D, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|E Chain E, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|F Chain F, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|G Chain G, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|H Chain H, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|I Chain I, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|J Chain J, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|K Chain K, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|L Chain L, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3A2C|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|B Chain B, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|C Chain C, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|D Chain D, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|E Chain E, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|F Chain F, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|G Chain G, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|H Chain H, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|I Chain I, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|J Chain J, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|K Chain K, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|L Chain L, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
Length = 324
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 119 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 161
>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap
Kinase-2
Length = 325
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 120 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 162
>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands
pdb|3GOK|B Chain B, Binding Site Mapping Of Protein Ligands
pdb|3GOK|C Chain C, Binding Site Mapping Of Protein Ligands
pdb|3GOK|D Chain D, Binding Site Mapping Of Protein Ligands
pdb|3GOK|E Chain E, Binding Site Mapping Of Protein Ligands
pdb|3GOK|F Chain F, Binding Site Mapping Of Protein Ligands
pdb|3GOK|G Chain G, Binding Site Mapping Of Protein Ligands
pdb|3GOK|H Chain H, Binding Site Mapping Of Protein Ligands
pdb|3GOK|I Chain I, Binding Site Mapping Of Protein Ligands
pdb|3GOK|J Chain J, Binding Site Mapping Of Protein Ligands
pdb|3GOK|K Chain K, Binding Site Mapping Of Protein Ligands
pdb|3GOK|L Chain L, Binding Site Mapping Of Protein Ligands
Length = 334
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 111 TEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQPDA 154
TE++ +++M+ IG A+Q+L S + + + +Y +++P+A
Sbjct: 129 TEREASEIMK-SIGEAIQYLHSINIAHRDVKPENLLYTSKRPNA 171
>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|B Chain B, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|C Chain C, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
pdb|1NXK|D Chain D, Crystal Structure Of Staurosporine Bound To Map Kap Kinase
2
Length = 400
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 92 ESIDGGSSQPEWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIYRTRQ 151
E +DGG + + ++ A + + IG A+Q+L S + + + +Y +++
Sbjct: 139 ECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAIQYLHSINIAHRDVKPENLLYTSKR 198
Query: 152 PDA 154
P+A
Sbjct: 199 PNA 201
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 21 RRERIADRMRALQELVPSCN----KTDRAAMLDEIVDYVKFLR 59
RR+++ + L LVP+CN K D+ +L V ++K LR
Sbjct: 24 RRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,897,929
Number of Sequences: 62578
Number of extensions: 114760
Number of successful extensions: 328
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 31
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)