Query 040019
Match_columns 166
No_of_seqs 209 out of 753
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 1.9E-14 4.2E-19 95.1 5.7 54 9-62 3-59 (60)
2 smart00353 HLH helix loop heli 99.5 2.6E-13 5.6E-18 88.3 6.7 49 15-63 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.4 1.6E-13 3.6E-18 90.7 5.1 49 11-59 2-55 (55)
4 KOG1318 Helix loop helix trans 99.2 3.9E-11 8.4E-16 108.7 5.9 56 8-63 231-290 (411)
5 KOG1319 bHLHZip transcription 98.8 7.9E-09 1.7E-13 86.2 4.2 59 8-66 60-125 (229)
6 KOG4304 Transcriptional repres 98.5 1.4E-07 3E-12 80.8 3.9 57 8-64 30-94 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.2 1.3E-06 2.8E-11 85.0 5.4 53 9-61 19-75 (803)
8 KOG2588 Predicted DNA-binding 98.1 2E-06 4.3E-11 84.6 2.6 58 9-66 275-333 (953)
9 PLN03217 transcription factor 97.9 3.5E-05 7.7E-10 57.2 5.5 50 19-68 16-71 (93)
10 KOG2483 Upstream transcription 97.7 8.8E-05 1.9E-09 63.3 6.0 55 10-64 59-116 (232)
11 KOG0561 bHLH transcription fac 97.3 0.00026 5.6E-09 63.1 4.1 52 15-66 65-118 (373)
12 KOG4029 Transcription factor H 97.0 0.00071 1.5E-08 56.4 3.8 59 9-67 108-170 (228)
13 KOG3960 Myogenic helix-loop-he 97.0 0.0025 5.3E-08 55.6 6.9 54 15-68 123-178 (284)
14 KOG4447 Transcription factor T 94.3 0.025 5.4E-07 46.3 1.9 48 13-60 81-130 (173)
15 KOG3910 Helix loop helix trans 91.3 0.19 4.1E-06 47.8 3.3 54 13-66 529-586 (632)
16 KOG3558 Hypoxia-inducible fact 82.0 1.3 2.9E-05 43.6 3.3 47 11-57 47-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 79.1 1.7 3.6E-05 42.1 2.8 40 18-57 33-76 (712)
18 KOG3559 Transcriptional regula 75.2 3.5 7.6E-05 38.9 3.7 45 15-59 6-54 (598)
19 PF08285 DPM3: Dolichol-phosph 67.8 5.3 0.00012 29.6 2.6 21 115-135 69-89 (91)
20 TIGR00986 3a0801s05tom22 mitoc 66.9 3.3 7.1E-05 33.5 1.4 38 22-59 48-85 (145)
21 KOG3898 Transcription factor N 61.2 5.5 0.00012 34.3 1.9 45 15-59 77-124 (254)
22 PF13442 Cytochrome_CBB3: Cyto 58.5 27 0.00058 22.9 4.5 53 2-55 12-67 (67)
23 PF04281 Tom22: Mitochondrial 55.7 6.7 0.00014 31.2 1.4 39 21-59 49-87 (137)
24 KOG4447 Transcription factor T 48.5 9.8 0.00021 31.4 1.3 44 17-60 29-74 (173)
25 KOG4395 Transcription factor A 46.8 39 0.00084 30.0 4.8 46 15-60 179-227 (285)
26 KOG3582 Mlx interactors and re 28.6 17 0.00037 36.3 -0.3 50 13-62 654-708 (856)
27 PF12029 DUF3516: Domain of un 28.4 79 0.0017 30.0 4.0 37 24-63 274-310 (461)
28 COG3074 Uncharacterized protei 27.7 78 0.0017 23.0 3.0 22 48-69 13-34 (79)
29 PF09321 DUF1978: Domain of un 27.5 90 0.002 27.2 3.9 18 23-40 116-133 (241)
30 KOG4167 Predicted DNA-binding 26.4 84 0.0018 31.9 3.9 102 25-158 519-625 (907)
31 PF02344 Myc-LZ: Myc leucine z 25.9 80 0.0017 19.5 2.4 17 18-34 13-29 (32)
32 PF14689 SPOB_a: Sensor_kinase 22.9 1E+02 0.0022 20.6 2.8 41 19-66 17-57 (62)
33 PTZ00405 cytochrome c; Provisi 22.8 1.3E+02 0.0028 22.8 3.6 38 22-59 72-113 (114)
34 KOG4832 Uncharacterized conser 21.2 1.7E+02 0.0038 25.6 4.4 43 24-66 12-56 (253)
35 PRK15422 septal ring assembly 20.9 1.2E+02 0.0027 22.2 3.0 23 48-70 13-35 (79)
36 PF00210 Ferritin: Ferritin-li 20.4 2.7E+02 0.0058 19.8 4.8 56 12-67 38-104 (142)
37 KOG4111 Translocase of outer m 20.3 97 0.0021 24.9 2.6 35 22-56 41-75 (136)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.52 E-value=1.9e-14 Score=95.13 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=50.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSC---NKTDRAAMLDEIVDYVKFLRLQV 62 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~---~K~DkasVL~eAI~YIk~Lq~qV 62 (166)
..+..|+..||.||++||+.|..|+.+||+. .|+||++||+.||+||++|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999998 78999999999999999999876
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.45 E-value=2.6e-13 Score=88.34 Aligned_cols=49 Identities=24% Similarity=0.437 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 040019 15 FFVVQLRRERIADRMRALQELVPS---CNKTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~---~~K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
+..||+||++||+.|..|+.+||+ ..|+||++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5689999999999999999999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.44 E-value=1.6e-13 Score=90.67 Aligned_cols=49 Identities=37% Similarity=0.574 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 040019 11 MFSLFFVVQLRRERIADRMRALQELVPSC-----NKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 11 ~~~hs~aER~RRerIneri~aLq~LVP~~-----~K~DkasVL~eAI~YIk~Lq 59 (166)
+..|+..||+||++||+.|..|+++||.. .|+||++||+.||+||+.||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45699999999999999999999999987 47999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.16 E-value=3.9e-11 Score=108.74 Aligned_cols=56 Identities=30% Similarity=0.561 Sum_probs=51.6
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHHHH
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVPSCN----KTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP~~~----K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
.++++.|+..|||||++||++|++|..|||.+. |..|..||..+++||+.||+.-+
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999985 56799999999999999998555
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.75 E-value=7.9e-09 Score=86.24 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=51.4
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCCCCC-------CCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVPSCN-------KTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP~~~-------K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
.+-+..|.-+||+||+.|+.....||.|||.|. |+.+|.||..+|+||.||+.++..-+
T Consensus 60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999999999999764 67799999999999999998766544
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.45 E-value=1.4e-07 Score=80.79 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=48.8
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCCCC--------CCCChhhHHHHHHHHHHHHHHHHHH
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVPSC--------NKTDRAAMLDEIVDYVKFLRLQVKV 64 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP~~--------~K~DkasVL~eAI~YIk~Lq~qVk~ 64 (166)
.-.|..|-+.||+||.|||+-+..|+.||+.. .|++||.||+-|++|++.||.+...
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34466788999999999999999999999954 4678999999999999999975443
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.24 E-value=1.3e-06 Score=85.02 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=49.5
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHH
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSCN----KTDRAAMLDEIVDYVKFLRLQ 61 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~~----K~DkasVL~eAI~YIk~Lq~q 61 (166)
.+..+|+.+||+||+++|--|.+|.+|||.+. |+||-.||.+||++||.++++
T Consensus 19 ~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 19 KKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999999999886 899999999999999999875
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.06 E-value=2e-06 Score=84.62 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=53.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCCC-CCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSCN-KTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~~-K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
.++.+|+++||+-|--|||||.+|+++||+.. |..|..+|..||+||++|+..-+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccc
Confidence 45889999999999999999999999999876 89999999999999999998766654
No 9
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.86 E-value=3.5e-05 Score=57.20 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCC------CCCChhhHHHHHHHHHHHHHHHHHHhchh
Q 040019 19 QLRRERIADRMRALQELVPSC------NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 68 (166)
Q Consensus 19 R~RRerIneri~aLq~LVP~~------~K~DkasVL~eAI~YIk~Lq~qVk~Ls~~ 68 (166)
|---+.|+|-+..||+|+|.. .|...+-||+||..||+.||.+|..|+..
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577999999999999964 35667889999999999999999999864
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.68 E-value=8.8e-05 Score=63.29 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=46.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhcCCCCC--CCC-hhhHHHHHHHHHHHHHHHHHH
Q 040019 10 QMFSLFFVVQLRRERIADRMRALQELVPSCN--KTD-RAAMLDEIVDYVKFLRLQVKV 64 (166)
Q Consensus 10 a~~~hs~aER~RRerIneri~aLq~LVP~~~--K~D-kasVL~eAI~YIk~Lq~qVk~ 64 (166)
....|+.-||+||..|.+.|..|+.+||... +.. +++||+.|+.||+.|+.+...
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 3456899999999999999999999999875 233 699999999999999875443
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.30 E-value=0.00026 Score=63.12 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 15 FFVVQLRRERIADRMRALQELVPSC--NKTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~~--~K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
+..||||=+-||..|..|+.|+|.- .|..||.||+.+.+||..|..+...|=
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 4469999999999999999999964 489999999999999999988766653
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.00 E-value=0.00071 Score=56.42 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=49.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPS----CNKTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~----~~K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
.....++..||.|=+-+|..|..|+.+||. ..|..|..+|..||.||++|+.-++.-..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 344556777999999999999999999995 34788999999999999999976665443
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.97 E-value=0.0025 Score=55.60 Aligned_cols=54 Identities=11% Similarity=0.232 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhc-CCCCC-CCChhhHHHHHHHHHHHHHHHHHHhchh
Q 040019 15 FFVVQLRRERIADRMRALQEL-VPSCN-KTDRAAMLDEIVDYVKFLRLQVKVLSMS 68 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~L-VP~~~-K~DkasVL~eAI~YIk~Lq~qVk~Ls~~ 68 (166)
.+-||||=.|+||-|.+|+.= .++-+ ++-|.-||..||+||..||.-++.+...
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456999999999999999764 44444 6889999999999999999988888753
No 14
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.34 E-value=0.025 Score=46.27 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCC--CCCCCChhhHHHHHHHHHHHHHH
Q 040019 13 SLFFVVQLRRERIADRMRALQELVP--SCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 13 ~hs~aER~RRerIneri~aLq~LVP--~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
-|++-||+|-..+|+-|.+||.++| +..|..|.-.|.-|-.||-||-.
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 4788899999999999999999999 56788999999999999999864
No 15
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=91.29 E-value=0.19 Score=47.80 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCCCCC----ChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 13 SLFFVVQLRRERIADRMRALQELVPSCNKT----DRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 13 ~hs~aER~RRerIneri~aLq~LVP~~~K~----DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
..+.-||.|=.-|||-|++|..+.=---|. .|--||..||.-|-.|++||.+-.
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 356668888888999999999887644343 477999999999999999999854
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=82.02 E-value=1.3 Score=43.57 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=39.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHH
Q 040019 11 MFSLFFVVQLRRERIADRMRALQELVPSC----NKTDRAAMLDEIVDYVKF 57 (166)
Q Consensus 11 ~~~hs~aER~RRerIneri~aLq~LVP~~----~K~DkasVL~eAI~YIk~ 57 (166)
|..-.-+.|.||.|=|+-|.+|..++|-- ..+|||+|+.-||-|+|-
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 33344567999999999999999999943 268999999999999974
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=79.11 E-value=1.7 Score=42.14 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHH
Q 040019 18 VQLRRERIADRMRALQELVPS----CNKTDRAAMLDEIVDYVKF 57 (166)
Q Consensus 18 ER~RRerIneri~aLq~LVP~----~~K~DkasVL~eAI~YIk~ 57 (166)
.||-|||+|-.+..|-+|+|- ..|.||-|||.-++-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 477899999999999999994 4699999999999999863
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=75.22 E-value=3.5 Score=38.89 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHH
Q 040019 15 FFVVQLRRERIADRMRALQELVPSC----NKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~~----~K~DkasVL~eAI~YIk~Lq 59 (166)
.-+.|.|||+=|-.|.+|..++|-. +..||++|+.-|-.|||.-+
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 3456999999999999999999953 36899999999999998644
No 19
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=67.82 E-value=5.3 Score=29.58 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.0
Q ss_pred HHHHHHHhHHHHHhhhhcCcc
Q 040019 115 VAKLMEEDIGAAMQFLQSKAL 135 (166)
Q Consensus 115 ~~~l~e~~~~~a~~~L~srGL 135 (166)
-++-+.++..+|+.|||+||+
T Consensus 69 A~~eL~~eI~eAK~dLr~kGv 89 (91)
T PF08285_consen 69 AAKELQKEIKEAKADLRKKGV 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 344566779999999999997
No 20
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=66.93 E-value=3.3 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq 59 (166)
-|-|-|||-+|+.+||+..+.--.++..-+..++|.+=
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~ 85 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTL 85 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999988777777888888887654
No 21
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=61.17 E-value=5.5 Score=34.29 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCC---CCChhhHHHHHHHHHHHHH
Q 040019 15 FFVVQLRRERIADRMRALQELVPSCN---KTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~~~---K~DkasVL~eAI~YIk~Lq 59 (166)
+.-||.|--.+|+-+..|+.++|.+. |+.|.-.|.-|-.||..|+
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhc
Confidence 34588888889999999999999643 6677778877777777766
No 22
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=58.50 E-value=27 Score=22.86 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=33.0
Q ss_pred ccccccccccc-cchH-HHHHHHHHHHHHHHHHhhcCCCCCC-CChhhHHHHHHHHH
Q 040019 2 AVCLCCHQQMF-SLFF-VVQLRRERIADRMRALQELVPSCNK-TDRAAMLDEIVDYV 55 (166)
Q Consensus 2 ~~~~~~~~a~~-~hs~-aER~RRerIneri~aLq~LVP~~~K-~DkasVL~eAI~YI 55 (166)
.+|..||.... .-++ ..-...+.|-..+.....-+|+... .+... +.+.+.||
T Consensus 12 ~~C~~CH~~~~~gp~l~~~~~~~~~l~~~i~~g~~~Mp~~~~~ls~~e-~~~l~~yi 67 (67)
T PF13442_consen 12 QNCASCHGPGGAGPSLAGKDWSPEELYNIIRNGRGGMPPFGGQLSDEE-IEALAAYI 67 (67)
T ss_dssp HHTHHHHGTGSSSSTSTHHHHHHHHHHHHHHHTBTTBSCTTTTSTHHH-HHHHHHHH
T ss_pred hHhHHhcCCCccCccchhhhhhHHHHHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHC
Confidence 36999998321 1122 2233458888888888888998875 33322 55666665
No 23
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=55.67 E-value=6.7 Score=31.23 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHH
Q 040019 21 RRERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 21 RRerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq 59 (166)
.-|-|-|||-+|+.+||+..+.--.+++.-+..++|.+=
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~ 87 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLF 87 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887666677777777776654
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=48.55 E-value=9.8 Score=31.39 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC--CCChhhHHHHHHHHHHHHHH
Q 040019 17 VVQLRRERIADRMRALQELVPSCN--KTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 17 aER~RRerIneri~aLq~LVP~~~--K~DkasVL~eAI~YIk~Lq~ 60 (166)
.|+.|..++++.+.-|+.|+|+.. ++.+--.|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 588899999999999999999763 22222225556666666654
No 25
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=46.84 E-value=39 Score=29.99 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCC---CCChhhHHHHHHHHHHHHHH
Q 040019 15 FFVVQLRRERIADRMRALQELVPSCN---KTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~~~---K~DkasVL~eAI~YIk~Lq~ 60 (166)
+.-||+|=..+|.-|..|+..||-.+ |+.|--.|..|-.||--|-.
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 44588888999999999999999776 57788889999999988764
No 26
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=28.58 E-value=17 Score=36.34 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCCC-----CCChhhHHHHHHHHHHHHHHHH
Q 040019 13 SLFFVVQLRRERIADRMRALQELVPSCN-----KTDRAAMLDEIVDYVKFLRLQV 62 (166)
Q Consensus 13 ~hs~aER~RRerIneri~aLq~LVP~~~-----K~DkasVL~eAI~YIk~Lq~qV 62 (166)
.|+-+|.+||+.|.-.+..|-+++++.. |+.++.-+..+++||.-++.+.
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~ 708 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQER 708 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhc
Confidence 4788999999999999999999999754 5667777999999998776543
No 27
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=28.40 E-value=79 Score=30.01 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 040019 24 RIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 24 rIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
-+.+-.++|++-||...|++. |.+.|.|+..|-.||.
T Consensus 274 YLsDAyraL~qtVP~~~rtee---l~dii~WLgelVRqVD 310 (461)
T PF12029_consen 274 YLSDAYRALRQTVPEDARTEE---LEDIIEWLGELVRQVD 310 (461)
T ss_pred HHHHHHHHHhhhCChhhcCch---HHHHHHHHHHHHHhcc
Confidence 478999999999999999876 8899999999888874
No 28
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.68 E-value=78 Score=23.05 Aligned_cols=22 Identities=14% Similarity=0.450 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhh
Q 040019 48 LDEIVDYVKFLRLQVKVLSMSR 69 (166)
Q Consensus 48 L~eAI~YIk~Lq~qVk~Ls~~~ 69 (166)
+..||+.|..||..|.+|...+
T Consensus 13 iqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999998764
No 29
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=27.55 E-value=90 Score=27.21 Aligned_cols=18 Identities=44% Similarity=0.750 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 040019 23 ERIADRMRALQELVPSCN 40 (166)
Q Consensus 23 erIneri~aLq~LVP~~~ 40 (166)
++..+||++||.|.|+..
T Consensus 116 ~ra~eRl~~LqalYp~v~ 133 (241)
T PF09321_consen 116 ERAQERLRELQALYPEVS 133 (241)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 456889999999999865
No 30
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=26.36 E-value=84 Score=31.86 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCCCChhhHHHHHHH--HHHHHHHHHHHhchhhcCccccccccccCCCccccccCCCCCCCCCCcc
Q 040019 25 IADRMRALQELVPSCNKTDRAAMLDEIVD--YVKFLRLQVKVLSMSRLGAAGAVAQLVADVPLSSALEGESIDGGSSQPE 102 (166)
Q Consensus 25 Ineri~aLq~LVP~~~K~DkasVL~eAI~--YIk~Lq~qVk~Ls~~~l~~~~~~~~~~~~~p~~~~~~g~~~~g~~~~~~ 102 (166)
...+|.+|++.---...+|+++...+..- -|..+|++|..|..-... . + +.| ||.|
T Consensus 519 fQAeipelqdrs~~~~d~h~a~lvwkpw~~~ei~~~q~rvt~l~nlaCS--s-a------------~Pg----gGtN--- 576 (907)
T KOG4167|consen 519 FQAEIPELQDRSALAQDTHKATLVWKPWPELEIHDLQQRVTNLLNLACS--S-A------------LPG----GGTN--- 576 (907)
T ss_pred hhhhhhHHHhhhhccccchhhhhcccccchhhccccHHHHHHHHHHHhh--h-c------------CCC----CCcc---
Confidence 45567777776666667788877665432 247889999998753221 1 1 111 1111
Q ss_pred cccccCCchHHHHHHHHH--HhHHHHHh-hhhcCcceeeechhhhhhhhcCCCCCCCCC
Q 040019 103 WEKWSNDGTEQQVAKLME--EDIGAAMQ-FLQSKALCIMPISLASAIYRTRQPDAPAFV 158 (166)
Q Consensus 103 ~~~~~~~~~e~~~~~l~e--~~~~~a~~-~L~srGLCLvPis~t~~i~~~~~~d~~a~~ 158 (166)
.|=-.+-||| .|+..|.+ .|+++-+=+=--+++. |+.++.|-|+|.
T Consensus 577 --------~ElALH~L~EakGnv~vAlE~LLlr~p~~~~~h~la~--Y~Y~gSd~WTp~ 625 (907)
T KOG4167|consen 577 --------SELALHSLFEAKGNVMVALEMLLLRKPVRLKCHPLAN--YHYAGSDKWTPL 625 (907)
T ss_pred --------HHHHHHHHHHhcccHHHHHHHHHhcCCCCccccccce--eeecCcccccHH
Confidence 2333445666 46666665 4555555555555665 888899999985
No 31
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.87 E-value=80 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040019 18 VQLRRERIADRMRALQE 34 (166)
Q Consensus 18 ER~RRerIneri~aLq~ 34 (166)
=|+||+.+.-++..|+.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37888999999888875
No 32
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.90 E-value=1e+02 Score=20.64 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 19 QLRRERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 19 R~RRerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
|.-|=-+...+..+..++--. + .++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllqlg-~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLG-K------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-C------HHHHHHHHHHHHHHHHHHH
Confidence 444445666777777766433 2 5779999999999988875
No 33
>PTZ00405 cytochrome c; Provisional
Probab=22.80 E-value=1.3e+02 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSC----NKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 22 RerIneri~aLq~LVP~~----~K~DkasVL~eAI~YIk~Lq 59 (166)
.+.|..-|..=+.++|+. ....+..-....|.||+.|+
T Consensus 72 ~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 72 PEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred HHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 467777777778888843 23445666788899999885
No 34
>KOG4832 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.15 E-value=1.7e+02 Score=25.63 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCC--CCCCCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 24 RIADRMRALQELVP--SCNKTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 24 rIneri~aLq~LVP--~~~K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
.+|+++..|+.|+. +++.-.+..+|...++-|+....|++.+.
T Consensus 12 s~ne~igEl~kl~s~rnm~~e~TI~~L~aI~~~~~sieLllq~ik 56 (253)
T KOG4832|consen 12 SVNEKIGELKKLLSLRNMGQEPTIKVLNAIGDEIISIELLLQKIK 56 (253)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655 23333344477777777777777777443
No 35
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.87 E-value=1.2e+02 Score=22.18 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhc
Q 040019 48 LDEIVDYVKFLRLQVKVLSMSRL 70 (166)
Q Consensus 48 L~eAI~YIk~Lq~qVk~Ls~~~l 70 (166)
+..||+-|.-||..|.+|...+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999987654
No 36
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=20.42 E-value=2.7e+02 Score=19.77 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCCCC-----------CCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 12 FSLFFVVQLRRERIADRMRALQELVPSCN-----------KTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 12 ~~hs~aER~RRerIneri~aLq~LVP~~~-----------K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
..+..-|+.-.++|.+++..|...++... ..|...+|..+++.-+.+-..+..+-.
T Consensus 38 ~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~~ 104 (142)
T PF00210_consen 38 QDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWTDPREALEAALEDEKEIIEEYRELIK 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566688899999999999998655432 146778888888777777777766653
No 37
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=97 Score=24.88 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVK 56 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk 56 (166)
-+-|-+||-.|.++||..-+.--....+.++..+|
T Consensus 41 dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~k 75 (136)
T KOG4111|consen 41 DETILERIWGLKEIVPQGRRSAIGATAGDAVFVVK 75 (136)
T ss_pred chhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHH
Confidence 35689999999999998765333334444444433
Done!