Query 040019
Match_columns 166
No_of_seqs 209 out of 753
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2E-17 6.8E-22 118.2 6.0 61 9-69 5-66 (82)
2 4h10_B Circadian locomoter out 99.6 2.6E-16 8.9E-21 110.8 6.7 58 9-66 7-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 3.2E-16 1.1E-20 119.0 7.4 59 9-67 26-88 (118)
4 1a0a_A BHLH, protein (phosphat 99.6 5.3E-17 1.8E-21 111.4 1.3 54 10-63 2-62 (63)
5 1an4_A Protein (upstream stimu 99.6 2.9E-16 9.9E-21 107.0 2.5 54 9-62 4-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.6 5.8E-16 2E-20 109.2 2.6 53 8-60 7-63 (73)
7 1hlo_A Protein (transcription 99.5 1.5E-14 5E-19 102.4 5.5 61 8-68 10-72 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 1.8E-14 6.1E-19 102.3 5.9 57 11-67 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 5.7E-14 1.9E-18 101.7 6.0 58 10-67 6-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.3E-13 4.4E-18 97.8 5.0 58 10-67 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 6E-12 2.1E-16 89.7 7.4 57 12-68 3-62 (80)
12 4f3l_A Mclock, circadian locom 99.1 7.9E-11 2.7E-15 100.5 6.2 55 8-62 10-65 (361)
13 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.5E-10 5.1E-15 100.2 4.9 54 8-61 11-68 (387)
14 1mdy_A Protein (MYOD BHLH doma 99.0 4.4E-10 1.5E-14 78.1 6.0 52 11-62 13-66 (68)
15 2ql2_B Neurod1, neurogenic dif 99.0 8.4E-10 2.9E-14 74.9 6.2 52 12-63 4-58 (60)
16 4ath_A MITF, microphthalmia-as 98.7 1.4E-08 4.6E-13 73.4 5.9 46 22-67 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.5 4.8E-08 1.6E-12 68.2 1.8 46 15-60 19-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.8E-05 9.7E-10 57.5 6.8 48 18-65 33-83 (97)
19 1f1f_A Cytochrome C6; heme, pr 78.7 5.3 0.00018 25.8 5.6 40 22-61 48-87 (89)
20 1gdv_A Cytochrome C6; RED ALGA 74.1 7.2 0.00025 24.8 5.2 58 3-60 13-82 (85)
21 3dr0_A Cytochrome C6; photosyn 60.4 13 0.00046 23.7 4.3 38 23-60 52-89 (93)
22 3fx7_A Putative uncharacterize 59.5 6.5 0.00022 28.5 2.8 25 48-72 65-89 (94)
23 3cu4_A Cytochrome C family pro 47.6 22 0.00076 22.7 3.8 55 3-58 15-83 (85)
24 1p3q_Q VPS9P, vacuolar protein 45.7 17 0.00057 23.8 2.9 26 16-41 3-28 (54)
25 2c1d_B SOXX; sulfur oxidation, 43.6 21 0.00072 25.3 3.4 39 2-40 39-95 (137)
26 3muj_A Transcription factor CO 39.6 44 0.0015 25.7 4.8 34 25-58 96-133 (138)
27 2exv_A Cytochrome C-551; alpha 38.5 33 0.0011 21.5 3.5 54 3-58 11-81 (82)
28 1m2x_A Class B carbapenemase B 37.7 15 0.0005 27.8 1.9 31 34-64 191-221 (223)
29 1a56_A C-551, ferricytochrome 37.6 36 0.0012 21.5 3.6 55 3-58 9-80 (81)
30 2wt7_A Proto-oncogene protein 36.1 76 0.0026 20.5 5.0 39 18-69 1-39 (63)
31 1cch_A Cytochrome C551; electr 35.5 18 0.00061 22.8 1.8 54 3-58 11-81 (82)
32 1a7t_A Metallo-beta-lactamase; 34.6 25 0.00084 26.7 2.7 31 33-63 200-230 (232)
33 2fhx_A SPM-1; metallo-beta-lac 33.7 20 0.00067 27.3 2.0 30 34-63 216-245 (246)
34 1cyi_A Cytochrome C6, cytochro 32.7 85 0.0029 19.9 4.9 39 22-60 46-84 (90)
35 3ph2_B Cytochrome C6; photosyn 32.2 91 0.0031 19.3 4.9 39 22-61 45-84 (86)
36 3cp5_A Cytochrome C; electron 31.7 63 0.0021 21.9 4.3 56 3-60 44-122 (124)
37 1c6r_A Cytochrome C6; electron 31.7 84 0.0029 19.8 4.7 39 22-60 47-85 (89)
38 2v4h_A NF-kappa-B essential mo 29.0 52 0.0018 24.4 3.5 19 16-34 79-97 (110)
39 3dmi_A Cytochrome C6; electron 28.2 90 0.0031 19.5 4.3 39 22-60 46-84 (88)
40 1xkm_B Distinctin chain B; por 26.9 87 0.003 17.4 3.4 20 45-64 3-22 (26)
41 1ls9_A Cytochrome C6; omega lo 26.9 1.1E+02 0.0039 19.4 4.7 39 22-60 49-87 (91)
42 2y8b_A Metallo-B-lactamase; hy 24.6 29 0.00097 27.3 1.5 32 33-64 233-264 (265)
43 2d0s_A Cytochrome C, cytochrom 23.4 27 0.00093 22.0 1.0 56 2-58 8-78 (79)
44 2jee_A YIIU; FTSZ, septum, coi 22.3 71 0.0024 22.4 3.1 23 48-70 15-37 (81)
45 1h32_B Cytochrome C, SOXX; ele 22.0 49 0.0017 23.3 2.3 34 2-35 40-86 (138)
46 3o0r_C Nitric oxide reductase 20.2 95 0.0033 21.8 3.5 55 3-59 60-133 (146)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.69 E-value=2e-17 Score=118.20 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=57.0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHhchhh
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSC-NKTDRAAMLDEIVDYVKFLRLQVKVLSMSR 69 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~-~K~DkasVL~eAI~YIk~Lq~qVk~Ls~~~ 69 (166)
+.+.+|+.+||+||++||++|.+|+.|||++ .|+||++||.+||+||++||.+++.|....
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 799999999999999999999999998654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=110.75 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=53.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHhc
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSC-NKTDRAAMLDEIVDYVKFLRLQVKVLS 66 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~-~K~DkasVL~eAI~YIk~Lq~qVk~Ls 66 (166)
+.+.+|+.+||+||++||++|.+|+.|||+. .|+||++||+.||+||++||.++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4567899999999999999999999999975 499999999999999999999988775
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=3.2e-16 Score=118.95 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=51.0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSCN----KTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~~----K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
+.+.+|+++||+||++||++|.+|+.|||++. |++|++||+.||+||++||.+++.|..
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~ 88 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 88 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999875 678999999999999999999999975
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.62 E-value=5.3e-17 Score=111.36 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=48.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 040019 10 QMFSLFFVVQLRRERIADRMRALQELVPSC-------NKTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 10 a~~~hs~aER~RRerIneri~aLq~LVP~~-------~K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
.+.+|+++||+||++||+.|..|+.|||++ .|.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999965 466799999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=2.9e-16 Score=107.01 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=50.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 040019 9 QQMFSLFFVVQLRRERIADRMRALQELVPSCN------KTDRAAMLDEIVDYVKFLRLQV 62 (166)
Q Consensus 9 ~a~~~hs~aER~RRerIneri~aLq~LVP~~~------K~DkasVL~eAI~YIk~Lq~qV 62 (166)
+.+..|+.+||+||++||+.|..|+.|||++. |+||++||.+||+||++||.+.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999876 6899999999999999999865
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=5.8e-16 Score=109.22 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=48.7
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVPSC----NKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP~~----~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.+.+.+|+.+||+||++||+.|.+|+.|||.+ .|+|||+||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999976 699999999999999999873
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=1.5e-14 Score=102.40 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=56.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHhchh
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVPSC--NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 68 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP~~--~K~DkasVL~eAI~YIk~Lq~qVk~Ls~~ 68 (166)
.+.+..|+..||+||..||+.|..|+.+||.+ .|++|++||..||+||++|+.+++.|...
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999976 58999999999999999999999999764
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.51 E-value=1.8e-14 Score=102.32 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=53.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 11 MFSLFFVVQLRRERIADRMRALQELVPSC--NKTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 11 ~~~hs~aER~RRerIneri~aLq~LVP~~--~K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
+..|+..||+||++||+.|..|+++||.+ .|++|++||..||+||++|+.+++.|..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999974 6899999999999999999999999875
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=5.7e-14 Score=101.69 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=53.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 10 QMFSLFFVVQLRRERIADRMRALQELVPSC---NKTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 10 a~~~hs~aER~RRerIneri~aLq~LVP~~---~K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
....|+..||+||+.||+.|..|+.+||.. .|.+|++||..||+||++|+.+.+.+..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999975 5999999999999999999999988764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=1.3e-13 Score=97.80 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhcCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 10 QMFSLFFVVQLRRERIADRMRALQELVPS---CNKT-DRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 10 a~~~hs~aER~RRerIneri~aLq~LVP~---~~K~-DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
.+..|+..||+||+.||+.|..|+.+||. ..|. .|+.||..||+||++||.+++++..
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999995 4455 6889999999999999999999875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.30 E-value=6e-12 Score=89.72 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHhchh
Q 040019 12 FSLFFVVQLRRERIADRMRALQELVPSC---NKTDRAAMLDEIVDYVKFLRLQVKVLSMS 68 (166)
Q Consensus 12 ~~hs~aER~RRerIneri~aLq~LVP~~---~K~DkasVL~eAI~YIk~Lq~qVk~Ls~~ 68 (166)
..|+..||+||..|++.|.+|+++||.. .|.+|++||..|++||+.|+.+.+.|...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 57889999999999999999999988653
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.10 E-value=7.9e-11 Score=100.54 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=43.1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHHHHHHH
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVP-SCNKTDRAAMLDEIVDYVKFLRLQV 62 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP-~~~K~DkasVL~eAI~YIk~Lq~qV 62 (166)
...+.+|+.+||+||++||+.|.+|+.||| +..|+||++||..||.|||.|+..-
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999 5669999999999999999998653
No 13
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.03 E-value=1.5e-10 Score=100.16 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=49.7
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 040019 8 HQQMFSLFFVVQLRRERIADRMRALQELVP----SCNKTDRAAMLDEIVDYVKFLRLQ 61 (166)
Q Consensus 8 ~~a~~~hs~aER~RRerIneri~aLq~LVP----~~~K~DkasVL~eAI~YIk~Lq~q 61 (166)
.+++.+|+.+||+||++||+.|.+|..||| ...|+||++||..||.|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 456889999999999999999999999999 667999999999999999999843
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.02 E-value=4.4e-10 Score=78.06 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=47.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 040019 11 MFSLFFVVQLRRERIADRMRALQELVPSC--NKTDRAAMLDEIVDYVKFLRLQV 62 (166)
Q Consensus 11 ~~~hs~aER~RRerIneri~aLq~LVP~~--~K~DkasVL~eAI~YIk~Lq~qV 62 (166)
...|+.-||+|+..||+.|..|+.+||.. .|+.|..+|..||+||.+|++.+
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999964 58899999999999999999754
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.98 E-value=8.4e-10 Score=74.86 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCCCC---CCChhhHHHHHHHHHHHHHHHHH
Q 040019 12 FSLFFVVQLRRERIADRMRALQELVPSCN---KTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 12 ~~hs~aER~RRerIneri~aLq~LVP~~~---K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
..|+.-||.|+..||+.|..|+.+||... |..|..+|..||+||.+|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999653 78999999999999999998653
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.75 E-value=1.4e-08 Score=73.43 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHHHHHhch
Q 040019 22 RERIADRMRALQELVPSCN----KTDRAAMLDEIVDYVKFLRLQVKVLSM 67 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~----K~DkasVL~eAI~YIk~Lq~qVk~Ls~ 67 (166)
|..||++|.+|..|||++. |.+|++||..||+||++||..++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999753 688999999999999999998887764
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.45 E-value=4.8e-08 Score=68.23 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 040019 15 FFVVQLRRERIADRMRALQELVPSC---NKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 15 s~aER~RRerIneri~aLq~LVP~~---~K~DkasVL~eAI~YIk~Lq~ 60 (166)
+.-||+|...||+-|..|+.+||.. .|+.|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3458899999999999999999965 478999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.90 E-value=2.8e-05 Score=57.45 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHh
Q 040019 18 VQLRRERIADRMRALQELVPSC---NKTDRAAMLDEIVDYVKFLRLQVKVL 65 (166)
Q Consensus 18 ER~RRerIneri~aLq~LVP~~---~K~DkasVL~eAI~YIk~Lq~qVk~L 65 (166)
||.|=..||+-|..|+.+||.. .|+.|..+|.-||+||.+|+..++.-
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677778999999999999964 37899999999999999999877653
No 19
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=78.70 E-value=5.3 Score=25.76 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRLQ 61 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~q 61 (166)
++.|.+.|..-...+|++...=+..=+...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQIEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHHHHHHHHHHHHHhhc
Confidence 5666666666667899886432334467889999988753
No 20
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=74.12 E-value=7.2 Score=24.77 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=34.3
Q ss_pred cccccccccccch------HHHHHH------HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFSLF------FVVQLR------RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 3 ~~~~~~~a~~~hs------~aER~R------RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.|..||.....-. .....+ .+.|.+.|+.-...+|++...=+..=+...+.||+.|..
T Consensus 13 ~C~~CHg~~g~g~~~~~~~~~~~l~~~~~~~~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 13 NCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp HTHHHHGGGCCSSSTTSCCCHHHHHHTTCCSHHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred hhHhhCCCCcCCCCCCCCCCcHHHHHccCCCHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 6899997643211 122222 445555555545678887643333446788999998864
No 21
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=60.39 E-value=13 Score=23.71 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 23 ERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 23 erIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
+.|...++.-...+|+....=+..=+...+.||+.|..
T Consensus 52 ~~~~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~l~~ 89 (93)
T 3dr0_A 52 EAVAYQVTNGQGAMPAFGGRLSDADIANVAAYIADQAE 89 (93)
T ss_dssp HHHHHHHHHCBTTBCCCBTTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 56666666666789988532233346788899988864
No 22
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=59.48 E-value=6.5 Score=28.52 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhhcCc
Q 040019 48 LDEIVDYVKFLRLQVKVLSMSRLGA 72 (166)
Q Consensus 48 L~eAI~YIk~Lq~qVk~Ls~~~l~~ 72 (166)
-+.+=+||.+|.++|+.|+..|+..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~~ 89 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLEH 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHHh
Confidence 3467789999999999999999863
No 23
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=47.56 E-value=22 Score=22.71 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=29.4
Q ss_pred cccccccccccchH------HHHHH------HHHHHHHHHHHhhcCCCCCC--CChhhHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFSLFF------VVQLR------RERIADRMRALQELVPSCNK--TDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 3 ~~~~~~~a~~~hs~------aER~R------RerIneri~aLq~LVP~~~K--~DkasVL~eAI~YIk~L 58 (166)
.|..||.....-.. ..... .+.|.+.|+.-+..+|++.+ ++.. =+...+.||..+
T Consensus 15 ~Ca~CHg~~g~g~~~~~~l~~p~l~~~~~~~~~~l~~~i~~g~~~Mp~~~~~~ls~~-ei~~l~~yi~~~ 83 (85)
T 3cu4_A 15 HCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPA-DALKIGEYVVAS 83 (85)
T ss_dssp HTTTTSGGGCCSSSTTCCCCHHHHHHTTCCSHHHHHHHTTSCCTTSCCCCTTTSCHH-HHHHHHHHHHHH
T ss_pred HhHHhCCCCCCCCCCCCCCCchhhhhcCCCCHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHHHHHHHh
Confidence 69999976432111 11222 33444444333345787764 4433 357788888764
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=45.66 E-value=17 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC
Q 040019 16 FVVQLRRERIADRMRALQELVPSCNK 41 (166)
Q Consensus 16 ~aER~RRerIneri~aLq~LVP~~~K 41 (166)
.++|.+|..-++-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57899999999999999999998765
No 25
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=43.58 E-value=21 Score=25.34 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=23.2
Q ss_pred cccccccccccc-------------chHHHHHHHHHHHHHHHHHhh-----cCCCCC
Q 040019 2 AVCLCCHQQMFS-------------LFFVVQLRRERIADRMRALQE-----LVPSCN 40 (166)
Q Consensus 2 ~~~~~~~~a~~~-------------hs~aER~RRerIneri~aLq~-----LVP~~~ 40 (166)
..|..||..... ..+..|.-++.|.+.|..-+. .+|.+.
T Consensus 39 ~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~~~~~~l~~~i~~p~~~~~~~~Mp~~~ 95 (137)
T 2c1d_B 39 GNCVACHQIGALPDVEFPGTIAPPLDGAGDRWTEAQLRGIVANAKMTFEGTFMPAFY 95 (137)
T ss_dssp TCGGGTBCCTTCTTCCSCCCSBCCSTTHHHHSCHHHHHHHHHHGGGTSTTCSSCCSS
T ss_pred cChhhhcCCCCCCCccccccCCCCHhHhhhccCHHHHHHHHcCccccCCCcccCccc
Confidence 579999986532 122334345677777766553 566653
No 26
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=39.57 E-value=44 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHH
Q 040019 25 IADRMRALQELVPSC----NKTDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 25 Ineri~aLq~LVP~~----~K~DkasVL~eAI~YIk~L 58 (166)
|.-.|+.|+.+||.. .+.-|-.||..|-+++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 778899999999954 3577999999999998766
No 27
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=38.50 E-value=33 Score=21.52 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=31.6
Q ss_pred cccccccccccc------hHHHHHH-----HHHHHHHHHHHhh------cCCCCCCCChhhHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFSL------FFVVQLR-----RERIADRMRALQE------LVPSCNKTDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 3 ~~~~~~~a~~~h------s~aER~R-----RerIneri~aLq~------LVP~~~K~DkasVL~eAI~YIk~L 58 (166)
.|..||.....- .+..|.. .+.|-+.|+.-.. .+|++ .++. .=+...+.||+.|
T Consensus 11 ~C~~CHg~~g~g~gp~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~-~ei~~l~~yl~~l 81 (82)
T 2exv_A 11 GCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPN-AVSD-DEAQTLAKWVLSQ 81 (82)
T ss_dssp TGGGTCCSSSCCSSCCHHHHHHHHTTCTTHHHHHHHHHHHCBSSSSSSSCBCCC-CCCH-HHHHHHHHHHHTC
T ss_pred CchhhcCCCCCCCCcCHHHHHHHhcCCcchHHHHHHHHHcCCCCCCCCCCCCCC-CCCH-HHHHHHHHHHHhC
Confidence 699999765421 1222322 5667776665443 37766 5543 3357778888764
No 28
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=37.65 E-value=15 Score=27.78 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=21.8
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 040019 34 ELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 64 (166)
Q Consensus 34 ~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk~ 64 (166)
.++|+-+..-....|.++++|++.++++|++
T Consensus 191 ~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 4556544433467899999999999998864
No 29
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=37.57 E-value=36 Score=21.48 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=31.7
Q ss_pred cccccccccccc------hHHHHHH-----HHHHHHHHHHHh------hcCCCCCCCChhhHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFSL------FFVVQLR-----RERIADRMRALQ------ELVPSCNKTDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 3 ~~~~~~~a~~~h------s~aER~R-----RerIneri~aLq------~LVP~~~K~DkasVL~eAI~YIk~L 58 (166)
.|..||.....- .+..|.. .+.|-+.|+.-+ ..+|++..++..- +...+.||..|
T Consensus 9 ~C~~CHg~~g~~~gp~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~e-i~~l~~yl~~l 80 (81)
T 1a56_A 9 NCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDAD-AKALADWILTL 80 (81)
T ss_dssp SHHHHBCSSCBSSSCCHHHHHHHHTTSSSHHHHHHHHHHHCBSSSSSSCCBCSCCSSSSHH-HHHHHHHHHHH
T ss_pred CchhhCCCCCCcCCcCHHHHHHHhcCCccHHHHHHHHHHcCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhC
Confidence 699999765421 1223322 455666665433 3577764444333 57788999876
No 30
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.09 E-value=76 Score=20.48 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhchhh
Q 040019 18 VQLRRERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSR 69 (166)
Q Consensus 18 ER~RRerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk~Ls~~~ 69 (166)
||++|.+...++.|-+. =..-.+|+..|+.+|..|+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777665 1334567888888888877644
No 31
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=35.48 E-value=18 Score=22.79 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=30.3
Q ss_pred cccccccccccc------hHHHHHH-----HHHHHHHHHHHhh------cCCCCCCCChhhHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFSL------FFVVQLR-----RERIADRMRALQE------LVPSCNKTDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 3 ~~~~~~~a~~~h------s~aER~R-----RerIneri~aLq~------LVP~~~K~DkasVL~eAI~YIk~L 58 (166)
.|..||.....- .+..|.. .+.|.+.|+.-+. .+|+. .++... +...+.||+.|
T Consensus 11 ~C~~CHg~~g~g~gP~l~~~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~~e-i~~l~~yl~~l 81 (82)
T 1cch_A 11 PCAACHSVDTKMVGPALKEVAAKNAGVEGAADTLALHIKNGSQGVWGPIPMPPN-PVTEEE-AKILAEWVLSL 81 (82)
T ss_dssp THHHHSCSSSCSSSCCHHHHHHHSSSCGGGHHHHHHHHHTCCCSSSSSCCCCCC-SCCHHH-HHHHHHHHHHC
T ss_pred CChhhcCCCCCCCCcChHHHHHHcCCCchHHHHHHHHhhcCCCCCCCCCCCCCC-CCCHHH-HHHHHHHHHhc
Confidence 599999775421 1122221 3556666655432 36666 444433 57788888876
No 32
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=34.61 E-value=25 Score=26.74 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=23.1
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 040019 33 QELVPSCNKTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 33 q~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
..++|+-+..-...+++.+++|++.+.++++
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 3466665554446789999999999988775
No 33
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=33.72 E-value=20 Score=27.27 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=23.0
Q ss_pred hcCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 040019 34 ELVPSCNKTDRAAMLDEIVDYVKFLRLQVK 63 (166)
Q Consensus 34 ~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk 63 (166)
.++|+-+..-....+.++++|++.|+++|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 356655554446889999999999999885
No 34
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=32.67 E-value=85 Score=19.86 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.+.|.+.|+.-...+|++...=+..=+...+.||+.|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 84 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEEIQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHHhccc
Confidence 456666666666788988642233446788999998875
No 35
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=32.16 E-value=91 Score=19.34 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCCCCC-CCChhhHHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCN-KTDRAAMLDEIVDYVKFLRLQ 61 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~-K~DkasVL~eAI~YIk~Lq~q 61 (166)
.+.|-..|+.-...+|++. .++.. =+...+.||+.|..+
T Consensus 45 ~~~~~~~i~~g~~~Mp~~~~~ls~~-ei~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 45 IVAITTVVTNGKAGMPAFKGRLTDD-QIAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcccCCCHH-HHHHHHHHHHHhhhc
Confidence 4556666666667899885 34433 457888999988643
No 36
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=31.69 E-value=63 Score=21.95 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred ccccccccccc------chHHHHHHHHHHHHHHHHHh-----------------hcCCCCCCCChhhHHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFS------LFFVVQLRRERIADRMRALQ-----------------ELVPSCNKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 3 ~~~~~~~a~~~------hs~aER~RRerIneri~aLq-----------------~LVP~~~K~DkasVL~eAI~YIk~Lq 59 (166)
.|..||..... ..+..|..++.|-+.|..-+ ..+|.. .++... +...+.||+.|+
T Consensus 44 ~C~~CH~~~g~~~gP~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~Mp~~-~Ls~~e-i~~l~~Yl~~l~ 121 (124)
T 3cp5_A 44 YCTACHRLDERFIGPALRDVTKRRGPVYIMNVMLNPNGMIQRHPVMKQLVQEYGTMMTDM-ALSEEQ-ARAILEYLRQVA 121 (124)
T ss_dssp HTTTTCCSSSCSSSCCCTTHHHHSCHHHHHHHHHCHHHHHHHCHHHHHHHHHHCSCCCCC-CCCHHH-HHHHHHHHHHHH
T ss_pred hhHHhCCCCCCCCCCCccccccccCHHHHHHHHhChHhhcccchhHHHHHhcCCCCCCCC-CCCHHH-HHHHHHHHHHhC
Confidence 69999987531 12233322455544443322 367754 444433 568899999887
Q ss_pred H
Q 040019 60 L 60 (166)
Q Consensus 60 ~ 60 (166)
.
T Consensus 122 ~ 122 (124)
T 3cp5_A 122 E 122 (124)
T ss_dssp H
T ss_pred C
Confidence 4
No 37
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=31.67 E-value=84 Score=19.77 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.+.|-+.|+.-...+|++...=+..=+...+.||+.|..
T Consensus 47 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 47 LEAITYQVENGKGAMPAWSGTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHHHHHcc
Confidence 456666666666788988642233336788999998865
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.98 E-value=52 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 040019 16 FVVQLRRERIADRMRALQE 34 (166)
Q Consensus 16 ~aER~RRerIneri~aLq~ 34 (166)
.+||.-|+|++..+..|+.
T Consensus 79 ~aERadREkl~~eKe~L~~ 97 (110)
T 2v4h_A 79 QAERHAREKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhHHHHHHH
Confidence 4788888888888888765
No 39
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=28.23 E-value=90 Score=19.51 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.+.|...|+.-...+|+..+.=+..=+...+.||+.|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 84 (88)
T 3dmi_A 46 EKSIISQVTGGKNAMPAFGGRLSDEEIANVAAYVLASAE 84 (88)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCCCCcCCCCCHHHHHHHHHHHHHHhc
Confidence 356667776666789988753333445678899988753
No 40
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.90 E-value=87 Score=17.36 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 040019 45 AAMLDEIVDYVKFLRLQVKV 64 (166)
Q Consensus 45 asVL~eAI~YIk~Lq~qVk~ 64 (166)
.|-|-||-.|+..|+...+.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999987764
No 41
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=26.87 E-value=1.1e+02 Score=19.36 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHH
Q 040019 22 RERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLRL 60 (166)
Q Consensus 22 RerIneri~aLq~LVP~~~K~DkasVL~eAI~YIk~Lq~ 60 (166)
.+.|.+.|..-...+|++...=+..=+...+.||+.+..
T Consensus 49 ~~~l~~~i~~g~~~Mp~~~~~ls~~ei~~l~~yl~~~~~ 87 (91)
T 1ls9_A 49 LEAIKYQVNNGKGAMPAWADRLDEDDIEAVSNYVYDQAV 87 (91)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCCcchhhhCCHHHHHHHHHHHHHhcc
Confidence 556666666666688988642233346788999998864
No 42
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=24.57 E-value=29 Score=27.29 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=17.9
Q ss_pred hhcCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 040019 33 QELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 64 (166)
Q Consensus 33 q~LVP~~~K~DkasVL~eAI~YIk~Lq~qVk~ 64 (166)
..++|+-+..-....++++.+|++.++++|++
T Consensus 233 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~v~~ 264 (265)
T 2y8b_A 233 EVVIPGHGLPGGLELLQHTTNVVKTHKVRPVA 264 (265)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHC--------
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 35667666544467899999999999998864
No 43
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=23.42 E-value=27 Score=22.00 Aligned_cols=56 Identities=18% Similarity=0.391 Sum_probs=30.0
Q ss_pred ccccccccccccc---hH---HHHHHH---HHHHHHHHHHhh------cCCCCCCCChhhHHHHHHHHHHHH
Q 040019 2 AVCLCCHQQMFSL---FF---VVQLRR---ERIADRMRALQE------LVPSCNKTDRAAMLDEIVDYVKFL 58 (166)
Q Consensus 2 ~~~~~~~~a~~~h---s~---aER~RR---erIneri~aLq~------LVP~~~K~DkasVL~eAI~YIk~L 58 (166)
..|..||.....- ++ ..|... +.|-+.|+.-.. .+|++..++..- +...+.||..|
T Consensus 8 ~~C~~CHg~~g~~~gP~l~~~~~~~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~e-i~~l~~yl~~l 78 (79)
T 2d0s_A 8 KGCMACHAIDKKLVGPSYKDVAKKYTEADVPKLVEKVKKGGAGVWGPVPMPPHPQVAEAD-IEKIVRWVLTL 78 (79)
T ss_dssp TTGGGTCCSSSCSSSCCHHHHHHHCCGGGHHHHHHHHHHCBCSSSCSSCBCCCTTSCHHH-HHHHHHHHTTC
T ss_pred CCChhhcCCCCCCCCCCHHHHHHHHccccHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhC
Confidence 3699999765421 12 222211 245555555432 267665554333 56777888654
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.28 E-value=71 Score=22.38 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhhc
Q 040019 48 LDEIVDYVKFLRLQVKVLSMSRL 70 (166)
Q Consensus 48 L~eAI~YIk~Lq~qVk~Ls~~~l 70 (166)
++.||+-|.-||..|.+|...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999987653
No 45
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=21.97 E-value=49 Score=23.29 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=20.1
Q ss_pred ccccccccccc-----------c--chHHHHHHHHHHHHHHHHHhhc
Q 040019 2 AVCLCCHQQMF-----------S--LFFVVQLRRERIADRMRALQEL 35 (166)
Q Consensus 2 ~~~~~~~~a~~-----------~--hs~aER~RRerIneri~aLq~L 35 (166)
+.|..||.... + ..+..|..++.|.+.|..-+.+
T Consensus 40 ~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~~~~~~l~~~i~~~~~~ 86 (138)
T 1h32_B 40 GNCIACHEVTEMADAQFPGTVGPSLDGVAARYPEAMIRGILVNSKNV 86 (138)
T ss_dssp TCGGGTCCCTTC---CCCCSSSCCCTTHHHHSCHHHHHHHHHCHHHH
T ss_pred CChhhccCCCCcCccccCCcCCCChhHhcccCCHHHHHHHHhCcccC
Confidence 37999998653 1 1123444466777777666543
No 46
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=20.20 E-value=95 Score=21.82 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=28.7
Q ss_pred ccccccccccc--------chHHHHHH-----HHHHHHHHHHHhhc------CCCCCCCChhhHHHHHHHHHHHHH
Q 040019 3 VCLCCHQQMFS--------LFFVVQLR-----RERIADRMRALQEL------VPSCNKTDRAAMLDEIVDYVKFLR 59 (166)
Q Consensus 3 ~~~~~~~a~~~--------hs~aER~R-----RerIneri~aLq~L------VP~~~K~DkasVL~eAI~YIk~Lq 59 (166)
.|..||..... .....|.. ++.|.+-|..-+.. +|.+. ++ ..=+...+.||+.|.
T Consensus 60 ~C~~CH~~~g~g~~~gP~L~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~~Mp~~~-Ls-~~ei~~l~ayl~~l~ 133 (146)
T 3o0r_C 60 NCVGCHTLLGEGAYFAPELGNVVGRRGGEEGFNTFLQAWMKIQPLNVPGRRAMPQFH-LS-EGQVDDLAEFLKWSS 133 (146)
T ss_dssp TGGGTSEETTEECSSSCBCSSGGGGTTHHHHHHHHHHHHHHHCCCCCTTSCCCCCCC-CC-HHHHHHHHHHHHHHT
T ss_pred CCcccCCCcCCCCCCCCCchhhhhhcccccchHHHHHHHHhCcccCCCCCCCCCCCC-cC-HHHHHHHHHHHHHhc
Confidence 49999976321 11222222 25666666554433 44443 32 234566777887665
Done!