BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040022
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 18 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 76
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 77 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 136
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 137 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 185
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 186 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 228
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 229 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 286
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 287 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 346
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 347 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 397
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 398 QEREGLDVNSHGENAY 413
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 170/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/427 (26%), Positives = 171/427 (40%), Gaps = 41/427 (9%)
Query: 47 DNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXXX 106
+ ++L S LV +M G AG VR KN +N++ + +
Sbjct: 5 NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 107 NPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSF 166
N +G IG + L + D + +YQ ER + ++++ S+
Sbjct: 65 NDISGIIGGLNYALLSGVKGE-DLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSAL 123
Query: 167 LTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEG 226
VY +HW W GW + G +DFAG VVH+ G A L A+ G
Sbjct: 124 WLTFVYAPFAHWLWGG-GWLAKL----------GALDFAGGMVVHISSGFAALAVAMTIG 172
Query: 227 PRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWS 286
R G +++ P HS L ++G LLWFGW+GFN GS +
Sbjct: 173 KRAGFEEYSIEP-----HSIPLTLIGAALLWFGWFGFNGGS------------ALAANDV 215
Query: 287 AIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAI 346
AI +T T A + + + G I G + +G + G AAIT VD AI
Sbjct: 216 AINAVVVTNTSAAVAGFVWMVIG--WIKGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAI 273
Query: 347 ICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKP 406
+ G VA + K K D+ L+A +HG G WG + G+ A P
Sbjct: 274 VIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILAN--------PEVN 325
Query: 407 GRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTDEEMAGMDLT 466
G LF G +LL + ++ + T + + R+S+ EE G+DL+
Sbjct: 326 GYAGLLF--GNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLS 383
Query: 467 SHGGLAY 473
H +AY
Sbjct: 384 QHEEVAY 390
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+G N GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGANAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+G N GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGANAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVEINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVFINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + + G CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVAINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 169/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + + G CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 168/436 (38%), Gaps = 49/436 (11%)
Query: 47 DNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN +++ LV M + G A+ G +R KN ++ MLT V
Sbjct: 9 DNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLS-MLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 FGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VV + IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHMVWG-----------GGLLASHGALDFAGGTVVAINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ +V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPMVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
+ A+I G VA L G L + DDP + + G CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL 337
Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTXXXXXXXXXXXRISTD 457
G G G+ M G L + I + W V R+ +
Sbjct: 338 ------GGVGFAEGVTM---GHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEE 388
Query: 458 EEMAGMDLTSHGGLAY 473
+E G+D+ SHG AY
Sbjct: 389 QEREGLDVNSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 142/359 (39%), Gaps = 40/359 (11%)
Query: 47 DNTYL-LFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATXXXXXXXXXXXXXX 105
DN + + +A ++F G A+ G +R KN ++ LT V
Sbjct: 9 DNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLS-XLTQVTVTFALVCILWVVYGYSLA 67
Query: 106 XNPSNGFIGK------HFFGLEAFPSPSFDYGYFLYQWXXXXXXXXXXXXXXXERTQFVA 159
N F G L A + Y + +Q ER +F A
Sbjct: 68 SGEGNNFFGNINWLXLKNIELTAVXGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPA 127
Query: 160 YLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGL 219
LI+ L Y ++H W LL G +DFAG VVH+ IAGL
Sbjct: 128 VLIFVVVWLTLSYIPIAHXVWG-----------GGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 220 WGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESG 279
GA + G R+G +P H+ V GT +L+ GW+GFN GS
Sbjct: 177 VGAYLIGKRVGFGKEAFKP-----HNLPXVFTGTAILYIGWFGFNAGS------------ 219
Query: 280 SYYGQWSAIGRTA-ITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
G + I A + T +A +A L +FG+ + G ++ C+G + G +T C
Sbjct: 220 --AGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACG 277
Query: 339 VVDPWAAIICGFVAAWI-LIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKES 396
+ A+I G VA L G L + DDP + +HG CG G I TG+FA S
Sbjct: 278 YIGVGGALIIGVVAGLAGLWGVTXLKRLLRVDDPCDVFGVHGVCGIVGCIXTGIFAASS 336
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 33/185 (17%)
Query: 201 VIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGW 260
V D GS +H G GL I R + + S ++GT LW W
Sbjct: 180 VKDAGGSMTIHTFGAYFGLTVTRILYRR--NLEQSKERQNSVYQSDLFAMIGTLFLWMYW 237
Query: 261 YGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITT--TLAGC---SAALTTLFGKRLIAG 315
FN + SY+G + R AI T +LA C S A+++ K+ G
Sbjct: 238 PSFN------------SAISYHG--DSQHRAAINTYCSLAACVLTSVAISSALHKK---G 280
Query: 316 HWNVTDVCNGLL-GGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEK-FKYDDPLE 373
++ + N L GG A T ++ P+ A+I GFV C ++ F Y P
Sbjct: 281 KLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFV-------CGIISTLGFVYLTPFL 333
Query: 374 AAQLH 378
++LH
Sbjct: 334 ESRLH 338
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 168 TGLVYPIVSHWF---WSSDGWASPTRTDNNLL 196
+ L+ P++S +F W++D +A PT NN L
Sbjct: 171 SPLIQPLISSFFNVNWTADNFAQPTNQVNNFL 202
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 202 IDFAGSGVVHMVGGIAGLWGALIEGPRI-GKFDHNDRPATMRGHSGTLVVLGTFLLWFGW 260
+ G ++H V GA EG + GK D R MR H+GT V++G + G
Sbjct: 574 VQKVGKVIIHKVEDP----GAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGR 629
Query: 261 YGFNPGS 267
+ + GS
Sbjct: 630 HVWQAGS 636
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,269,222
Number of Sequences: 62578
Number of extensions: 590259
Number of successful extensions: 1019
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 19
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)