Query 040022
Match_columns 490
No_of_seqs 150 out of 1367
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0682 Ammonia permease [Inor 100.0 1E-113 2E-118 892.5 31.1 430 24-478 8-447 (500)
2 COG0004 AmtB Ammonia permease 100.0 3E-110 6E-115 858.6 35.4 397 44-478 2-407 (409)
3 TIGR00836 amt ammonium transpo 100.0 2E-105 4E-110 837.6 35.3 392 48-473 1-403 (403)
4 TIGR03644 marine_trans_1 proba 100.0 3E-105 6E-110 835.2 34.4 387 45-475 2-403 (404)
5 PRK10666 ammonium transporter; 100.0 2E-104 4E-109 832.9 33.1 395 42-475 26-428 (428)
6 PF00909 Ammonium_transp: Ammo 100.0 4.8E-98 1E-102 785.1 15.2 394 49-473 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 1.9E-34 4.2E-39 289.1 18.4 293 132-460 118-423 (442)
8 PF00909 Ammonium_transp: Ammo 64.4 58 0.0013 34.7 10.8 144 40-228 182-328 (399)
9 COG4120 ABC-type uncharacteriz 58.6 24 0.00051 35.8 6.0 55 326-388 42-97 (293)
10 COG1079 Uncharacterized ABC-ty 58.2 36 0.00078 35.2 7.5 120 338-468 58-189 (304)
11 PF01148 CTP_transf_1: Cytidyl 58.0 12 0.00027 36.4 4.1 64 316-379 160-236 (259)
12 PLN02594 phosphatidate cytidyl 54.1 8.6 0.00019 40.3 2.3 38 342-379 235-276 (342)
13 PRK11624 cdsA CDP-diglyceride 53.0 23 0.00049 36.2 5.1 82 298-379 160-258 (285)
14 TIGR00836 amt ammonium transpo 44.6 2.1E+02 0.0046 30.8 11.0 140 44-228 192-333 (403)
15 KOG3796 Ammonium transporter R 41.4 1.7E+02 0.0038 31.2 9.3 126 244-396 62-198 (442)
16 COG0575 CdsA CDP-diglyceride s 35.1 38 0.00083 34.0 3.4 76 304-379 148-241 (265)
17 PLN02953 phosphatidate cytidyl 32.3 70 0.0015 34.3 4.9 79 301-379 280-374 (403)
18 PRK10457 hypothetical protein; 30.4 78 0.0017 26.4 3.9 32 325-356 10-43 (82)
19 PF11085 YqhR: Conserved membr 29.1 3.1E+02 0.0066 26.2 8.0 30 421-450 67-96 (173)
20 TIGR03644 marine_trans_1 proba 28.8 5.2E+02 0.011 27.9 10.9 138 45-225 202-343 (404)
21 PF06570 DUF1129: Protein of u 28.3 95 0.0021 29.9 4.8 112 245-370 77-205 (206)
22 PF11023 DUF2614: Protein of u 24.8 2.4E+02 0.0052 25.1 6.1 45 58-102 16-63 (114)
23 PF14074 DUF4257: Protein of u 24.8 20 0.00043 30.0 -0.5 58 297-354 4-74 (82)
24 PRK10712 PTS system fructose-s 24.5 3.2E+02 0.0069 30.8 8.6 123 246-392 238-363 (563)
25 PF02653 BPD_transp_2: Branche 22.1 1.9E+02 0.0041 28.5 5.8 59 313-371 24-84 (267)
26 COG3965 Predicted Co/Zn/Cd cat 21.7 3.8E+02 0.0083 27.5 7.6 87 216-315 63-151 (314)
27 PRK10666 ammonium transporter; 20.4 6.1E+02 0.013 27.6 9.5 136 46-226 218-355 (428)
28 COG4589 Predicted CDP-diglycer 20.2 47 0.001 33.5 0.9 65 315-379 204-278 (303)
No 1
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-113 Score=892.51 Aligned_cols=430 Identities=51% Similarity=0.857 Sum_probs=389.2
Q ss_pred HhHhhhhhhhhhccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040022 24 AAEYICGRFEAVSNK-FVDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFA 102 (490)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~ 102 (490)
.++.++.+......+ .++..+..|+.|++.++++||.|||||+|||+|+||+||++|+|+||++|++++.++||++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys 87 (500)
T KOG0682|consen 8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS 87 (500)
T ss_pred ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 444555433332222 3334556788899999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC-CCccccccc-ccccCCCCC------CcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccc
Q 040022 103 FAFGNP-SNGFIGKHF-FGLEAFPSP------SFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPI 174 (490)
Q Consensus 103 lafG~~-~~~fiG~~~-f~~~~~~~~------~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv 174 (490)
|+||+. .|+|||... |.+.++..+ .+++.+++||++||+++++|++|+++||+|+++|++|+++|.++||||
T Consensus 88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~ 167 (500)
T KOG0682|consen 88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP 167 (500)
T ss_pred eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence 999987 799999975 776655311 248999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCCCcCCCCCCCCcccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHH
Q 040022 175 VSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTF 254 (490)
Q Consensus 175 ~ahWvW~~~GWL~~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~ 254 (490)
++||+|+|+||++ ++|++|||||++||++||++||++++++|||++||+ ++..++||||+++++||++
T Consensus 168 ~a~W~W~~~Gw~~----------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~--~~~~~~~~hsv~~v~LGt~ 235 (500)
T KOG0682|consen 168 VAHWVWSPNGWLY----------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFF--GKAIALRPHSVTLVVLGTF 235 (500)
T ss_pred cceeeecCCceee----------ecceeeccCCceeEecccHHHHHHHHHhCCccCccc--ccccccCCCchhHHHHHHH
Confidence 9999999999998 489999999999999999999999999999999984 3556789999999999999
Q ss_pred HHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeecccccccccccccc
Q 040022 255 LLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAIT 334 (490)
Q Consensus 255 lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaIT 334 (490)
||||||++||+||.+.++.. .. +|+++||+||++.|++||++++|+++|||++..+|||+|+||||||
T Consensus 236 lLWfGWl~FN~GS~~~i~~~-----------~~-~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT 303 (500)
T KOG0682|consen 236 LLWFGWLGFNGGSFYAINLR-----------SW-ARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAIT 303 (500)
T ss_pred HHHHHHHccCCcccccccch-----------hH-HHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhc
Confidence 99999999999999988521 11 3999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHhhhhHHHHHHHHhhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCccccc
Q 040022 335 GGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFM 414 (490)
Q Consensus 335 a~a~~v~pw~A~iiG~iag~~~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~ 414 (490)
|+|++++||+|+++|++++++|+.+.++++|+|||||+|++++||+||+||+|++|+|+.+++....++.. .+..|+++
T Consensus 304 ~gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~-~~~~G~~~ 382 (500)
T KOG0682|consen 304 PGCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI-ARISGLWM 382 (500)
T ss_pred CCCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc-cCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999988654433322 35679999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCChHHHHcCCCccccccccccCCCc
Q 040022 415 GGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKL-LRISTDEEMAGMDLTSHGGLAYAYHDD 478 (490)
Q Consensus 415 gg~~~ql~~Ql~g~~vi~~w~~~~~~ii~~ilk~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~~ 478 (490)
+++++||++|+++++++.+|+++++.++++++||+++ |||++|||+.|+|..||||.+|++.+.
T Consensus 383 ~~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~ 447 (500)
T KOG0682|consen 383 GHGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHES 447 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhc
Confidence 9999999999999999999999999999999999999 999999999999999999999987554
No 2
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-110 Score=858.58 Aligned_cols=397 Identities=36% Similarity=0.632 Sum_probs=366.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-cccccC
Q 040022 44 YAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKH-FFGLEA 122 (490)
Q Consensus 44 ~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~-~f~~~~ 122 (490)
++.|++|+|+|+.||++|||||+|+|+|++|+||+.|+++||+++++++++.|+++||+++||++.++|||+. .+++.+
T Consensus 2 ~~~d~~wml~sa~LV~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~~~ 81 (409)
T COG0004 2 DSGDTAWMLLSAALVLLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFLNG 81 (409)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhccC
Confidence 5789999999999999999999999999999999999999999999999999999999999998778999984 444443
Q ss_pred CC-------CCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcc
Q 040022 123 FP-------SPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNL 195 (490)
Q Consensus 123 ~~-------~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~ 195 (490)
.. +..+++.+++||++||+++++|+||+++||+||.+|++|+++|.+++|||++||+|+++|||.
T Consensus 82 ~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~-------- 153 (409)
T COG0004 82 LGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLA-------- 153 (409)
T ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHH--------
Confidence 21 122678999999999999999999999999999999999999999999999999999988997
Q ss_pred cccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhcc
Q 040022 196 LFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTY 275 (490)
Q Consensus 196 ~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~ 275 (490)
++|++|||||+|||..+|++||+++++||||+++ ++.++||||++++++|+.|||+||||||+||++..+
T Consensus 154 --~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~-----~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~--- 223 (409)
T COG0004 154 --LLGALDFAGGTVVHINAGFAALAAALVLGKRIGG-----KPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAAN--- 223 (409)
T ss_pred --hcCceecCCCceEEechhHHHHHHHHHeecccCC-----CCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhh---
Confidence 4799999999999999999999999999999983 346789999999999999999999999999999873
Q ss_pred CCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHH
Q 040022 276 GESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWI 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~ 355 (490)
..+..+++||++|+++|+++|++++|+++||+|+..++||++||||+|||+|++|+||+|++||+++|++
T Consensus 224 ----------~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i 293 (409)
T COG0004 224 ----------GVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVI 293 (409)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHH
Q 040022 356 LIGCNK-LAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGW 434 (490)
Q Consensus 356 ~~~~~~-l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w 434 (490)
|+...+ +++|+|+|||+|++++||++|+||+|++|+|++++. . . ..|.++ ++++|++.|+++++++.+|
T Consensus 294 ~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~-~---~-----~~G~~~-~~~~~l~~Q~~~v~~~~~~ 363 (409)
T COG0004 294 CYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAV-G---G-----GGGLFY-GGGVQLGVQLLGVLVTIVY 363 (409)
T ss_pred HHHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCccc-c---c-----cCcccc-ccHHHHHHHHHHHHHHHHH
Confidence 988887 666699999999999999999999999999999864 0 0 125554 6789999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCChHHHHcCCCccccccccccCCCc
Q 040022 435 VSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHDD 478 (490)
Q Consensus 435 ~~~~~~ii~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~ 478 (490)
++++++++++++|++.+||||+|||++|||.+||||++|++++.
T Consensus 364 ~~v~t~ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~ 407 (409)
T COG0004 364 AFVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEA 407 (409)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHhhCCChHHhcccccccccc
Confidence 99999999999999999999999999999999999999997543
No 3
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=1.8e-105 Score=837.60 Aligned_cols=392 Identities=48% Similarity=0.844 Sum_probs=363.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCcccccccccccCCCC
Q 040022 48 NTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGN--PSNGFIGKHFFGLEAFPS 125 (490)
Q Consensus 48 ~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~--~~~~fiG~~~f~~~~~~~ 125 (490)
++|+++|++|||+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|+|..++++.+.+.
T Consensus 1 ~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~~~~~ 80 (403)
T TIGR00836 1 TAWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLKNFLY 80 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhccCCc
Confidence 479999999999999999999999999999999999999999999999999999999997 468999987666654322
Q ss_pred --------CCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccc
Q 040022 126 --------PSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLF 197 (490)
Q Consensus 126 --------~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~ 197 (490)
+.+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+++|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~---------- 150 (403)
T TIGR00836 81 PGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLY---------- 150 (403)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhh----------
Confidence 12458899999999999999999999999999999999999999999999999999999998
Q ss_pred cCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCC
Q 040022 198 GSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGE 277 (490)
Q Consensus 198 ~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~ 277 (490)
++|++|||||++||++||++||+++++||||++|++ +++++|+||++++++|+++||+||||||+||++..+
T Consensus 151 ~lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~---~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~----- 222 (403)
T TIGR00836 151 KLGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFP---RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAAN----- 222 (403)
T ss_pred ccCcchhcCceeEecchhHHHHHHHHHhcCCCCCCc---CcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccc-----
Confidence 489999999999999999999999999999999985 346789999999999999999999999999987542
Q ss_pred CCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHHHH
Q 040022 278 SGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILI 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~ 357 (490)
..+.++++||++|+++|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|+++|+++|++++
T Consensus 223 --------~~~~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~ 294 (403)
T TIGR00836 223 --------GTAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCY 294 (403)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH-hhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHHHH
Q 040022 358 GCNK-LAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVS 436 (490)
Q Consensus 358 ~~~~-l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w~~ 436 (490)
...+ +++|+|||||+|++++|++||+||++++|+|++++... + ..|.+++++++|++.|++|++++++|++
T Consensus 295 ~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~--~------~~g~~~~~~~~~l~~Ql~g~~~~~~~s~ 366 (403)
T TIGR00836 295 LAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGG--V------GTGGLLGGNGKQLGVQLIGIAAIIAWAF 366 (403)
T ss_pred HHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhccccccc--c------cCCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 8876 88899999999999999999999999999999875321 1 1256777888999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCChHHHHcCCCccccccccc
Q 040022 437 VTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAY 473 (490)
Q Consensus 437 ~~~~ii~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay 473 (490)
+.++++++++|++.+||+++|||+.|+|.+||||++|
T Consensus 367 ~~~~ii~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 367 VVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHhCCChhhhCcccC
Confidence 9999999999999999999999999999999999998
No 4
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=2.7e-105 Score=835.22 Aligned_cols=387 Identities=36% Similarity=0.618 Sum_probs=355.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC---Cccccccccccc
Q 040022 45 AIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPS---NGFIGKHFFGLE 121 (490)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~---~~fiG~~~f~~~ 121 (490)
.+|+.|+++|++|||+|||||+|+|+|++|+||++|+++||++|+++++++||++||+++||++. ++++|. |+..
T Consensus 2 ~~d~~w~l~~~~LV~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~--f~~~ 79 (404)
T TIGR03644 2 ALDTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGS--FLLG 79 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchh--hhhc
Confidence 47999999999999999999999999999999999999999999999999999999999999752 345543 2221
Q ss_pred CC--------C---CCC-cchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCC
Q 040022 122 AF--------P---SPS-FDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPT 189 (490)
Q Consensus 122 ~~--------~---~~~-~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~ 189 (490)
.. + +.. +.+.+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~-~GwL~-- 156 (404)
T TIGR03644 80 ADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG-GGWLD-- 156 (404)
T ss_pred ccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC-chHHh--
Confidence 11 0 111 346789999999999999999999999999999999999999999999999998 69997
Q ss_pred CCCCcccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccch
Q 040022 190 RTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFV 269 (490)
Q Consensus 190 ~~~~~~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~ 269 (490)
++|++|||||++||++||++||+++++||||++||+++++++++||||++++++|+++||+||||||+||++
T Consensus 157 --------~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l 228 (404)
T TIGR03644 157 --------DLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQL 228 (404)
T ss_pred --------hcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhh
Confidence 489999999999999999999999999999999998888888899999999999999999999999999998
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHH
Q 040022 270 YILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICG 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG 349 (490)
..+.. ++...+.++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||
T Consensus 229 ~~~~~--------~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG 300 (404)
T TIGR03644 229 ALSDV--------ADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIG 300 (404)
T ss_pred hcccc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHH
Confidence 76411 1223568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHH
Q 040022 350 FVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQIL 429 (490)
Q Consensus 350 ~iag~~~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~ 429 (490)
+++|++|+...++++|+|||||||++++||+||+||++++|+|+.+ +|++.|++|++
T Consensus 301 ~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~-----------------------~~l~~Ql~g~~ 357 (404)
T TIGR03644 301 AVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGD-----------------------ASFGAQLIGAA 357 (404)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccc-----------------------hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999621 48999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCChHHHHcCCCccccccccccC
Q 040022 430 VITGWVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAY 475 (490)
Q Consensus 430 vi~~w~~~~~~ii~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~ 475 (490)
++++|+++.++++++++|++.+||+++|||++|+|.+||||++||+
T Consensus 358 ~~~~~~~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e 403 (404)
T TIGR03644 358 TIFAWVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPE 403 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCC
Confidence 9999999999999999999999999999999999999999999974
No 5
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=1.8e-104 Score=832.89 Aligned_cols=395 Identities=29% Similarity=0.515 Sum_probs=356.7
Q ss_pred ccccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc-ccc
Q 040022 42 TGYAIDNTYLLFSAYLVFVMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKH-FFG 119 (490)
Q Consensus 42 ~~~~~d~~w~l~~~~lV~~M~-~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~-~f~ 119 (490)
..++.|++|+|+|++|||+|| |||+|+|+|+||+||++|+++||++|+++++++||++||+++||+ .++|+|.. +++
T Consensus 26 ~~~~~d~~w~l~~~~lV~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~-~~~~iG~~~~~~ 104 (428)
T PRK10666 26 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGE-GNAFFGNFNWLM 104 (428)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCC-CCCcccChHHhh
Confidence 467789999999999999998 999999999999999999999999999999999999999999997 47899974 444
Q ss_pred ccCCCC-----CCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCc
Q 040022 120 LEAFPS-----PSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNN 194 (490)
Q Consensus 120 ~~~~~~-----~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~ 194 (490)
+.+.+. +.+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~------- 176 (428)
T PRK10666 105 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLA------- 176 (428)
T ss_pred hcCCCcccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHh-------
Confidence 443321 12457889999999999999999999999999999999999999999999999998 89997
Q ss_pred ccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhc
Q 040022 195 LLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKT 274 (490)
Q Consensus 195 ~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~ 274 (490)
++|++|||||++||++||++||+++++||||++|. ++++||||++++++|+++||+||||||+||++..+
T Consensus 177 ---~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~-----~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~-- 246 (428)
T PRK10666 177 ---SDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFG-----KEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAAN-- 246 (428)
T ss_pred ---hcchhhhcccchhHHhHHHHHHHHHHHhcccCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHhccchhhcccc--
Confidence 48999999999999999999999999999999852 23679999999999999999999999999987652
Q ss_pred cCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhH
Q 040022 275 YGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAW 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~ 354 (490)
..+.++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|+
T Consensus 247 -----------~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~ 315 (428)
T PRK10666 247 -----------EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGL 315 (428)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHH
Q 040022 355 ILIGCNK-LAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITG 433 (490)
Q Consensus 355 ~~~~~~~-l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~ 433 (490)
+|+...+ +++|+|||||+|++++||+||+||++++|+|++++.....| ..|.. .++|++.|++|++++++
T Consensus 316 v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~~~------~~g~~---~~~ql~~Ql~g~~~~~~ 386 (428)
T PRK10666 316 AGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGVGY------AEGVT---MGHQVLVQLESIAITIV 386 (428)
T ss_pred HHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCccc------cCccc---cHHHHHHHHHHHHHHHH
Confidence 9987765 44469999999999999999999999999999875311111 11211 24899999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCChHHHHcCCCccccccccccC
Q 040022 434 WVSVTMGTLFWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAY 475 (490)
Q Consensus 434 w~~~~~~ii~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~ 475 (490)
|++++++++++++|++.+||+++|||++|+|.+||||++||.
T Consensus 387 ~~~~~t~ii~~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 387 WSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred HHHHHHHHHHHHHHhcccCcCCHHHHHhCCChhHhCccccCC
Confidence 999999999999999999999999999999999999999963
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=4.8e-98 Score=785.09 Aligned_cols=394 Identities=44% Similarity=0.790 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CCcccccccccccCCCCC
Q 040022 49 TYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNP--SNGFIGKHFFGLEAFPSP 126 (490)
Q Consensus 49 ~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~--~~~fiG~~~f~~~~~~~~ 126 (490)
+|+++|+++|++||+||+++|+|.+|+||+.|+++||++|+++++++||++||+++||++ .++++|+..+.....+..
T Consensus 1 ~w~l~~~~lv~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~~~~~~ 80 (399)
T PF00909_consen 1 AWLLLCAFLVFLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAFGFQWA 80 (399)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccccchhc
Confidence 599999999999999999999999999999999999999999999999999999999986 567888744433222211
Q ss_pred -CcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccc-cc
Q 040022 127 -SFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVI-DF 204 (490)
Q Consensus 127 -~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~-Df 204 (490)
.+++.+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+|+++|||.+ +|++ ||
T Consensus 81 ~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~----------~g~~~Df 150 (399)
T PF00909_consen 81 NIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQ----------LGFLIDF 150 (399)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHH----------CCHH--T
T ss_pred cccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhcc----------CccCCCC
Confidence 13567899999999999999999999999999999999999999999999999999999984 7888 99
Q ss_pred cCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCc
Q 040022 205 AGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQ 284 (490)
Q Consensus 205 aGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~ 284 (490)
+||++||++||++||++++++|||++|++ ++++++|+||++++++|+++||+||+|||+||++..+.
T Consensus 151 aG~~vVH~~gG~~gL~~a~~lg~R~~~~~--~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~----------- 217 (399)
T PF00909_consen 151 AGSGVVHLFGGVFGLAAAIVLGPRRGRFD--GKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANG----------- 217 (399)
T ss_dssp T-TTTTHHHHHHHHHHHHHHH--CTTTTG--TTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSH-----------
T ss_pred ccceeeehhhhHHHHhhheeeCCCCCccc--ccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCC-----------
Confidence 99999999999999999999999999997 66788999999999999999999999999999987741
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHHHHHHHH-hh
Q 040022 285 WSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNK-LA 363 (490)
Q Consensus 285 ~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~-l~ 363 (490)
....|+++||++|+++|++++++++++++||+|+.+++||+|||||||||+|++++||+|+++|+++|++++...+ ++
T Consensus 218 -~~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~ 296 (399)
T PF00909_consen 218 -RAWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLL 296 (399)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheeccc
Confidence 1222599999999999999999999999999999999999999999999999999999999999999999988875 99
Q ss_pred hhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040022 364 EKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLF 443 (490)
Q Consensus 364 ~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w~~~~~~ii~ 443 (490)
+|+|||||+|++++||+||+||+|++|+|+.++... + +..+.++.++++|+++|+++++++++|+++++++++
T Consensus 297 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~--~-----~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~ 369 (399)
T PF00909_consen 297 KRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNY--S-----DGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIF 369 (399)
T ss_dssp HHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCS--S------SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEeccccceEeeeeccHHHHHHHHHHHhcccccc--c-----cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987431 1 122444445569999999999999999999999999
Q ss_pred HHHhhccccCCChHHHHcCCCccccccccc
Q 040022 444 WLLNKLKLLRISTDEEMAGMDLTSHGGLAY 473 (490)
Q Consensus 444 ~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay 473 (490)
+++|++.+||+++|||++|+|.+||||++|
T Consensus 370 ~~l~~~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 370 KILKKFGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HHHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred HHHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence 999999999999999999999999999999
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=289.14 Aligned_cols=293 Identities=22% Similarity=0.216 Sum_probs=233.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccccccCcceeh
Q 040022 132 YFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVH 211 (490)
Q Consensus 132 ~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~DfaGs~vVH 211 (490)
+-+..+.||+.++.|..||+.+|.++.++++++++-.++ +-..-|-+-+ -+.+-|-.||..||
T Consensus 118 e~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~-~~~~e~v~~n----------------~~~v~d~g~smtih 180 (442)
T KOG3796|consen 118 ESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTA-FGINEMVISN----------------IFNVNDHGGSMTIH 180 (442)
T ss_pred HHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHH-HHHHHHHHHH----------------hccccccCCceEEE
Confidence 345667899999999999999999999999999976553 3333222211 36789999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHH
Q 040022 212 MVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRT 291 (490)
Q Consensus 212 ~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~ 291 (490)
.+|+++||++++++.||..|-.+++ +.-..||..++++|+++||+.|+.||..-+ . ..+...|+
T Consensus 181 ~FgAYFGLavA~~l~k~~~~~~~~~--~gs~y~sdLfAMIGtlFLWmfWPSFNsal~--~------------~~~~r~rA 244 (442)
T KOG3796|consen 181 AFGAYFGLAVAWCLYKPNLEGTTEN--EGSAYHSDLFAMIGTLFLWMFWPSFNSALA--R------------SGDARHRA 244 (442)
T ss_pred ehhhhhhhhHhhhccCccccccccc--cCceecchHHHHHHHHHHHHhccccchhhh--c------------CchhhHHH
Confidence 9999999999999998887754332 223568999999999999999999997532 2 11456899
Q ss_pred HHHhHHHHHHHHHHHHHHHHH--HhCcceeeccccccccccccccCCCCCC-ChhHHHHHHhhhhHHHHHHH-----Hhh
Q 040022 292 AITTTLAGCSAALTTLFGKRL--IAGHWNVTDVCNGLLGGFAAITGGCSVV-DPWAAIICGFVAAWILIGCN-----KLA 363 (490)
Q Consensus 292 ~~NT~la~a~g~lt~~~~~~~--~~~k~~~~~~~nG~LaGLVaITa~a~~v-~pw~A~iiG~iag~~~~~~~-----~l~ 363 (490)
++||++|.|++.+|++.++.+ ..||.|+.++.|..|||.|||..+|+.+ +||.|++||+|||.+++... ++.
T Consensus 245 i~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~ 324 (442)
T KOG3796|consen 245 IFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLE 324 (442)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhc
Confidence 999999999999999999976 4789999999999999999999999965 99999999999999986554 356
Q ss_pred hhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccC-----CchhHHHHHHHHHHHHHHHHHHH
Q 040022 364 EKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMG-----GGGKLLAAHIVQILVITGWVSVT 438 (490)
Q Consensus 364 ~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~g-----g~~~ql~~Ql~g~~vi~~w~~~~ 438 (490)
+|+||.|.|++.+.||++|++|.++...++.-.. .+.|+..-...+- +-+ ....|-..|+.|+.++++-+.+.
T Consensus 325 ~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t-~e~yg~~l~~ifp-~~~gng~~~~~sQa~~Ql~gl~~~l~~A~~g 402 (442)
T KOG3796|consen 325 RKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLAT-PESYGKGLYHIFP-MIGGNGHGMATSQALYQLFGLLVTLVIALVG 402 (442)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHhhcc-hhhcccccccccc-eecCCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999888864221 0123211000011 111 34689999999999999999999
Q ss_pred HHHHHHHHhhccccCCChHHHH
Q 040022 439 MGTLFWLLNKLKLLRISTDEEM 460 (490)
Q Consensus 439 ~~ii~~ilk~~~~LRv~~e~E~ 460 (490)
.++...+||. +.+|.++|+|-
T Consensus 403 GlLtGllLkl-~~w~qp~d~~~ 423 (442)
T KOG3796|consen 403 GLLTGLLLKL-KIWDQPSDDEY 423 (442)
T ss_pred hhhhhheeec-cccCCCChhhh
Confidence 9999999886 56777766653
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=64.37 E-value=58 Score=34.73 Aligned_cols=144 Identities=23% Similarity=0.216 Sum_probs=88.5
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH---HHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccc
Q 040022 40 VDTGYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMN---IMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKH 116 (490)
Q Consensus 40 ~~~~~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~n---il~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~ 116 (490)
++....-|..+..+.+.+.++-.+|| ++|+....|... +.+..++..+.+.+.|.++.|-.. |+
T Consensus 182 ~~~~~~~s~~~~~lG~~lLw~gW~gF---N~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk--------- 248 (399)
T PF00909_consen 182 PNPIPPHSPPLAMLGTLLLWFGWFGF---NAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK--------- 248 (399)
T ss_dssp TSS--HCHHHHHHHHHHHHHHHHHHH---HHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS---------
T ss_pred ccCCCCCcHHHhhhhHHHHHHHhccc---ccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc---------
Confidence 33445556778888888877766655 556555444443 567778888889999988866443 21
Q ss_pred cccccCCCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCccc
Q 040022 117 FFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLL 196 (490)
Q Consensus 117 ~f~~~~~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~ 196 (490)
.+ ...+.+.+.|...+. .+-+.=.++..-++..++ ++.++....+ |+.
T Consensus 249 -----------~~-~~~~~nG~laGlVai---ta~~~~v~p~~A~~iG~i-ag~i~~~~~~-------~l~--------- 296 (399)
T PF00909_consen 249 -----------WS-MVGICNGALAGLVAI---TAGAGYVTPWGALLIGAI-AGLISYFGVS-------WLL--------- 296 (399)
T ss_dssp --------------HHHHHHHHHHHHHHH---TTTTTTS-HHHHHHHHHH-HHHHHHHHHH-------HHH---------
T ss_pred -----------cc-hhhhhhhhhhhhhhe---ecccCCCcHHHHHHhhhh-Hhhhhhhhee-------ccc---------
Confidence 01 122334444433332 333455677777777763 4444444332 333
Q ss_pred ccCccccccCcceehhhHHHHHHHHHHHHcCC
Q 040022 197 FGSGVIDFAGSGVVHMVGGIAGLWGALIEGPR 228 (490)
Q Consensus 197 ~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR 228 (490)
.++++.|-.+.-.||.++|+.|...+-+...+
T Consensus 297 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 297 KRLKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred ceeEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 26899999999999999999999999877544
No 9
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.57 E-value=24 Score=35.78 Aligned_cols=55 Identities=27% Similarity=0.174 Sum_probs=43.9
Q ss_pred cccccccccCCCCCCChhHHHHHHhhhhHHH-HHHHHhhhhcCccccccccccccchhhHHHHH
Q 040022 326 LLGGFAAITGGCSVVDPWAAIICGFVAAWIL-IGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIF 388 (490)
Q Consensus 326 ~LaGLVaITa~a~~v~pw~A~iiG~iag~~~-~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~ 388 (490)
.+.|-|+.|.-..=++||.|.++++++|.+. .....+..|+||+| ..+|+.=.++
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~kI~~--------LLAgIL~M~a 97 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKFKILT--------LLAGILTMIA 97 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHH
Confidence 5778888888888899999999999999987 44556777899988 5666655544
No 10
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=58.19 E-value=36 Score=35.24 Aligned_cols=120 Identities=13% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCChhHHHHHHhhhhHHH-HHHHHhhhhcCccccccccccccch-hhHHHHHHHHhcccccccc--cCCCCCCCC-ccc
Q 040022 338 SVVDPWAAIICGFVAAWIL-IGCNKLAEKFKYDDPLEAAQLHGGC-GAWGVIFTGLFAKESYVNE--VYPGKPGRP-YGL 412 (490)
Q Consensus 338 ~~v~pw~A~iiG~iag~~~-~~~~~l~~kl~IDD~~~a~~vHg~~-Gi~G~l~~glfa~~~~~~~--~y~~~~~~~-~G~ 412 (490)
..-+||..++.+++.|.++ .+...+..|+|-|.-+--.++|..+ |+-.-+...+|.++..--+ ..+.-+..+ .|-
T Consensus 58 ~t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nqiisG~alnl~a~Glt~fl~~~~~~~~~~~~~~~~~p~l~~ip~~g~ 137 (304)
T COG1079 58 GTGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASGLTAFLGQSIFGQPGTTFQPIDIPGLSDIPVIGP 137 (304)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccCCcccccCccccc
Confidence 3568999999999999976 6666788899999999999999876 4444555666665531000 000000001 110
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCC------ChHHHHcCCCcccc
Q 040022 413 FMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLK-LLRI------STDEEMAGMDLTSH 468 (490)
Q Consensus 413 ~~gg~~~ql~~Ql~g~~vi~~w~~~~~~ii~~ilk~~~-~LRv------~~e~E~~GlD~~~h 468 (490)
.+.-| -...--++....+.+++++|++ +||+ ++..|..|.|+..-
T Consensus 138 -------~~~~~----~~~~y~ai~lv~~~~~~L~rTr~GL~lravGE~P~aad~~Gi~V~r~ 189 (304)
T COG1079 138 -------ALFGQ----SPLVYLAILLVALVWYVLYRTRFGLRLRAVGENPAAADAMGINVYRY 189 (304)
T ss_pred -------hhccc----CHHHHHHHHHHHHHHHHHhccccceEEEEecCChhHHHhCCCChhhH
Confidence 00011 1222333444566788888885 5655 44667788887543
No 11
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=58.03 E-value=12 Score=36.37 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=50.2
Q ss_pred cceeeccccccccccccccCCCCC---------CChhHHHHHHhhhhHHHH----HHHHhhhhcCcccccccccccc
Q 040022 316 HWNVTDVCNGLLGGFAAITGGCSV---------VDPWAAIICGFVAAWILI----GCNKLAEKFKYDDPLEAAQLHG 379 (490)
Q Consensus 316 k~~~~~~~nG~LaGLVaITa~a~~---------v~pw~A~iiG~iag~~~~----~~~~l~~kl~IDD~~~a~~vHg 379 (490)
+.++.....|.++|.++....+-. .++|.+++++++++++.. ..+.+|++.+|-|--+.+|=||
T Consensus 160 ~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 160 KISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcC
Confidence 367788899999998876655431 467889999999998863 4456777799999999999887
No 12
>PLN02594 phosphatidate cytidylyltransferase
Probab=54.12 E-value=8.6 Score=40.31 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=32.3
Q ss_pred hhHHHHHHhhhhHHH----HHHHHhhhhcCcccccccccccc
Q 040022 342 PWAAIICGFVAAWIL----IGCNKLAEKFKYDDPLEAAQLHG 379 (490)
Q Consensus 342 pw~A~iiG~iag~~~----~~~~~l~~kl~IDD~~~a~~vHg 379 (490)
.+.++++|++++++. .+.+.+++.+||-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCc
Confidence 578999999999987 45566777799999999999998
No 13
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=53.05 E-value=23 Score=36.21 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHhC-----cceeeccccccccccccccCCCCC--------CChhHHHHHHhhhhHHHH----HHH
Q 040022 298 AGCSAALTTLFGKRLIAG-----HWNVTDVCNGLLGGFAAITGGCSV--------VDPWAAIICGFVAAWILI----GCN 360 (490)
Q Consensus 298 a~a~g~lt~~~~~~~~~~-----k~~~~~~~nG~LaGLVaITa~a~~--------v~pw~A~iiG~iag~~~~----~~~ 360 (490)
..-++=..+++..+...| |.||...-+|.++|++..+-.+.. .+++..+++|++.++... .-+
T Consensus 160 ~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDL~ES 239 (285)
T PRK11624 160 LVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGDLTES 239 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444556776665433 468999999999998775543321 246677788888777663 335
Q ss_pred HhhhhcCcccccccccccc
Q 040022 361 KLAEKFKYDDPLEAAQLHG 379 (490)
Q Consensus 361 ~l~~kl~IDD~~~a~~vHg 379 (490)
.+|++.++.|--..+|=||
T Consensus 240 ~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 240 MFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred HHhhccCCCCCcCcCCCcC
Confidence 6777799999999999997
No 14
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=44.55 E-value=2.1e+02 Score=30.76 Aligned_cols=140 Identities=20% Similarity=0.226 Sum_probs=80.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccccccccc
Q 040022 44 YAIDNTYLLFSAYLVFVMQLGFAMLCAGSVR--AKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLE 121 (490)
Q Consensus 44 ~~~d~~w~l~~~~lV~~M~~GfalleaG~vr--~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~~ 121 (490)
..-|..+.++.+++.++--+|| ++|+.- ...+.++.+...+..+.+.+.|.++-|-. .|+. ..++.
T Consensus 192 ~~~n~~~~~lGt~lLw~gW~gF---N~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~--~~~~~------ 259 (403)
T TIGR00836 192 RPHNVPLVVLGTFILWFGWFGF---NAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKP--TLLGA------ 259 (403)
T ss_pred CCCCHHHHHHHHHHHHHHHhcc---cchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--CHHHH------
Confidence 3456788888888888755554 555542 23566788888889999999999987642 2321 01110
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCcc
Q 040022 122 AFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGV 201 (490)
Q Consensus 122 ~~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~ 201 (490)
.+. +.+-...+.+-++=.+...-++..++ +++++....++ +. .++++
T Consensus 260 -------------~nG---~LAGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~~-------l~---------~~~~i 306 (403)
T TIGR00836 260 -------------CNG---ILAGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVSK-------LK---------KKLKI 306 (403)
T ss_pred -------------Hhh---hhhhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHHH-------HH---------HHcCC
Confidence 000 11111111122233444444444442 22222221111 11 14788
Q ss_pred ccccCcceehhhHHHHHHHHHHHHcCC
Q 040022 202 IDFAGSGVVHMVGGIAGLWGALIEGPR 228 (490)
Q Consensus 202 ~DfaGs~vVH~~gG~~aL~~a~~lGpR 228 (490)
.|--+.-.||..+|+.|....-++.++
T Consensus 307 DD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 307 DDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred CCCcccchhhhhhHHHHHHHHHHhccc
Confidence 999999999999999999988877643
No 15
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=41.41 E-value=1.7e+02 Score=31.22 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=82.7
Q ss_pred CChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHH-HHH----HHHhCcce
Q 040022 244 HSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTL-FGK----RLIAGHWN 318 (490)
Q Consensus 244 hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~-~~~----~~~~~k~~ 318 (490)
|-+.++-+|-++-++=-+||.+ +.+|-++++.. +=|- +++ ....+|++
T Consensus 62 hvMifiGfGFLmtflrRygfSs-------------------------V~fnlllaA~~--vQWaiL~~G~~~~~~~gk~~ 114 (442)
T KOG3796|consen 62 HVMIFIGFGFLMTFLRRYGFSS-------------------------VGFNLLLAALG--VQWAILLDGFLSQFPGGKFV 114 (442)
T ss_pred eehhhhhHHHHHHHHHHccchH-------------------------HHHHHHHHHHH--HHHHHHHHHHHHhCCCCeEE
Confidence 5666666666666666666632 33566665542 2222 222 22346753
Q ss_pred e--eccccc---cccccccccCCCCCCChhHHHHHHhhhhHHHHHHHHh-hhhcCccccccccccccchhhHHHHHHHHh
Q 040022 319 V--TDVCNG---LLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKL-AEKFKYDDPLEAAQLHGGCGAWGVIFTGLF 392 (490)
Q Consensus 319 ~--~~~~nG---~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~l-~~kl~IDD~~~a~~vHg~~Gi~G~l~~glf 392 (490)
+ ..+.|. +.+=|++..+--+-++|-+=++.-++=-.+.-....+ .+-+++||.-+...+|-++.-.|+-.+-.+
T Consensus 115 i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~~~~~e~v~~n~~~v~d~g~smtih~FgAYFGLavA~~l 194 (442)
T KOG3796|consen 115 IGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTAFGINEMVISNIFNVNDHGGSMTIHAFGAYFGLAVAWCL 194 (442)
T ss_pred EEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceEEEehhhhhhhhHhhhc
Confidence 3 344443 4445667777778899999888887766654333333 355999999999999999999999999888
Q ss_pred cccc
Q 040022 393 AKES 396 (490)
Q Consensus 393 a~~~ 396 (490)
.++.
T Consensus 195 ~k~~ 198 (442)
T KOG3796|consen 195 YKPN 198 (442)
T ss_pred cCcc
Confidence 7765
No 16
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=35.09 E-value=38 Score=34.04 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhC-----cceeeccccccccccccccCCCCC---------CChhHHHHHHhhhhHHHHHH----HHhhhh
Q 040022 304 LTTLFGKRLIAG-----HWNVTDVCNGLLGGFAAITGGCSV---------VDPWAAIICGFVAAWILIGC----NKLAEK 365 (490)
Q Consensus 304 lt~~~~~~~~~~-----k~~~~~~~nG~LaGLVaITa~a~~---------v~pw~A~iiG~iag~~~~~~----~~l~~k 365 (490)
+.++++.|...+ |.||.....|.+.|.+..+..+-. .++|..++++++.+++.... +.++++
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~ 227 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFESYIKRL 227 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 445666655433 479999999999998776655543 13477888888888887443 467778
Q ss_pred cCcccccccccccc
Q 040022 366 FKYDDPLEAAQLHG 379 (490)
Q Consensus 366 l~IDD~~~a~~vHg 379 (490)
+++-|--..+|=||
T Consensus 228 ~gvKDsg~liPGHG 241 (265)
T COG0575 228 LGIKDSGWLIPGHG 241 (265)
T ss_pred cCCCCcCCCCCCcC
Confidence 99999999999997
No 17
>PLN02953 phosphatidate cytidylyltransferase
Probab=32.33 E-value=70 Score=34.33 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhC----cceeeccccccccccccccCCCC--------CCChhHHHHHHhhhhHHHH----HHHHhhh
Q 040022 301 SAALTTLFGKRLIAG----HWNVTDVCNGLLGGFAAITGGCS--------VVDPWAAIICGFVAAWILI----GCNKLAE 364 (490)
Q Consensus 301 ~g~lt~~~~~~~~~~----k~~~~~~~nG~LaGLVaITa~a~--------~v~pw~A~iiG~iag~~~~----~~~~l~~ 364 (490)
++=+.+++..+...| +.|+.....|.+.|+++....+- ...++.++++|++.++... ..+.+++
T Consensus 280 ~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GDL~eS~iKR 359 (403)
T PLN02953 280 ATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGDLTESMIKR 359 (403)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Confidence 344555666655433 35777777888776654322221 2345566777887777653 4456777
Q ss_pred hcCcccccccccccc
Q 040022 365 KFKYDDPLEAAQLHG 379 (490)
Q Consensus 365 kl~IDD~~~a~~vHg 379 (490)
+++|.|--+.+|=||
T Consensus 360 ~~gVKDsG~liPGHG 374 (403)
T PLN02953 360 DAGVKDSGSLIPGHG 374 (403)
T ss_pred ccCCCCccccCCCCC
Confidence 799999888888886
No 18
>PRK10457 hypothetical protein; Provisional
Probab=30.37 E-value=78 Score=26.38 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=19.1
Q ss_pred cccccccc--ccCCCCCCChhHHHHHHhhhhHHH
Q 040022 325 GLLGGFAA--ITGGCSVVDPWAAIICGFVAAWIL 356 (490)
Q Consensus 325 G~LaGLVa--ITa~a~~v~pw~A~iiG~iag~~~ 356 (490)
|.++|.+| +.|+-+-...+..+++|++++++-
T Consensus 10 G~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iG 43 (82)
T PRK10457 10 GLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVG 43 (82)
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 44444444 445544456667777777777763
No 19
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=29.07 E-value=3.1e+02 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040022 421 LAAHIVQILVITGWVSVTMGTLFWLLNKLK 450 (490)
Q Consensus 421 l~~Ql~g~~vi~~w~~~~~~ii~~ilk~~~ 450 (490)
..-|++|++++.+.+.+.+++...++||+.
T Consensus 67 ~~G~~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 67 WLGNLIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999988875
No 20
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=28.81 E-value=5.2e+02 Score=27.88 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=81.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHh---cccch-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccc
Q 040022 45 AIDNTYLLFSAYLVFVMQLGFAMLCA---GSVRA-KNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGL 120 (490)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfallea---G~vr~-kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~ 120 (490)
.-|..+..+.+++.++--+||=-=.+ ...++ +.+..+.+...+..+.+.+.|.++-|-. +++. ..
T Consensus 202 ~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~--~~-------- 270 (404)
T TIGR03644 202 GSNLPLATLGTFILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKA--DL-------- 270 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC--CH--------
Confidence 44677888999888887766642211 11122 3355677777888889999999987643 3321 00
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCc
Q 040022 121 EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSG 200 (490)
Q Consensus 121 ~~~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG 200 (490)
..+.+.+.|...+. -+-+.=.+...-++..+ ++++++..... ++. +++
T Consensus 271 -----------~~~~nG~LAGLVaI---Ta~~~~v~p~~A~iiG~-iag~v~~~~~~-------~~~----------~~~ 318 (404)
T TIGR03644 271 -----------TMVLNGALAGLVAI---TAEPLTPSPLAATLIGA-VGGVIVVFSIV-------LLD----------KLK 318 (404)
T ss_pred -----------HHHHHHHHhhhhhh---ccccCCCCHHHHHHHHH-HHHHHHHHHHH-------HHH----------hCC
Confidence 11112222221111 12224456666666666 33444433222 222 478
Q ss_pred cccccCcceehhhHHHHHHHHHHHH
Q 040022 201 VIDFAGSGVVHMVGGIAGLWGALIE 225 (490)
Q Consensus 201 ~~DfaGs~vVH~~gG~~aL~~a~~l 225 (490)
+.|--+.-.||.++|..|...+-+.
T Consensus 319 iDD~~~~~~vHg~~Gi~G~i~~glf 343 (404)
T TIGR03644 319 IDDPVGAISVHGVAGIWGTLVVPIT 343 (404)
T ss_pred CCCCcCchHhhhHHHHHHHHHHHHh
Confidence 8999999999999999998888765
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=28.33 E-value=95 Score=29.92 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=57.6
Q ss_pred ChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHh------Ccce
Q 040022 245 SGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIA------GHWN 318 (490)
Q Consensus 245 n~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~------~k~~ 318 (490)
+.....+-..+++++.+.+-.|-..-+++.. .+.. -.+++++.+..+++.-..+.++.. +|..
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~---------~~~~--gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~ 145 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKN---------SNQY--GIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPS 145 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------cccc--cHHHHHHHHHHHHHHHHHHHHHHhcccccccccH
Confidence 5567778888888888877776554443211 0111 344555555555555555544432 2221
Q ss_pred ee-ccccc-----ccccc---ccccCC--CCCCChhHHHHHHhhhhHHHHHHHHhhhhcCccc
Q 040022 319 VT-DVCNG-----LLGGF---AAITGG--CSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDD 370 (490)
Q Consensus 319 ~~-~~~nG-----~LaGL---VaITa~--a~~v~pw~A~iiG~iag~~~~~~~~l~~kl~IDD 370 (490)
.. .+.-+ ..-++ .+.-|. -..++||.-++||+++-.+. .++++|++|-.
T Consensus 146 ~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~---~~lkkk~~i~~ 205 (206)
T PF06570_consen 146 WWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR---FYLKKKYNITG 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH---HHHHHHhCCCC
Confidence 11 11111 11111 122222 23578999998887766654 34567788753
No 22
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.85 E-value=2.4e+02 Score=25.08 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcccchhh--H-HHHHHHHHHHHHHHHHHHHHhhhh
Q 040022 58 VFVMQLGFAMLCAGSVRAKN--T-MNIMLTNVLDAATGGLFYYLFGFA 102 (490)
Q Consensus 58 V~~M~~GfalleaG~vr~kn--~-~nil~kn~~~~~v~~l~~~l~Gy~ 102 (490)
..++..|+...|.|.+=+.+ . .-.++-.++....+++.|+.+|+-
T Consensus 16 l~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 16 LSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455677777777554322 1 222345677777888999998875
No 23
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=24.76 E-value=20 Score=29.97 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhCcc----------e---eeccccccccccccccCCCCCCChhHHHHHHhhhhH
Q 040022 297 LAGCSAALTTLFGKRLIAGHW----------N---VTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAW 354 (490)
Q Consensus 297 la~a~g~lt~~~~~~~~~~k~----------~---~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~ 354 (490)
+|...|+++.++-++.++||. . ..++.-|++|++.++|...+.-+.+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 456678888888775544432 1 235677888888888888877777777777777765
No 24
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=24.52 E-value=3.2e+02 Score=30.84 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHhHHHHHHHhh--ccccccchhhhhccCCCCCCCCcchhHHHHHHHhH-HHHHHHHHHHHHHHHHHhCcceeecc
Q 040022 246 GTLVVLGTFLLWFGWY--GFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTT-LAGCSAALTTLFGKRLIAGHWNVTDV 322 (490)
Q Consensus 246 ~~l~~lG~~lLw~GW~--gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~-la~a~g~lt~~~~~~~~~~k~~~~~~ 322 (490)
+|+++.|.+++-++.. --+.++...+. ..++++ =..+.+.+.-++-.++-+.--|=-.+
T Consensus 238 lP~vv~gGil~ai~~~~g~~~~~~~~~~~------------------~~~~~~gg~~~~~lmvpvla~yia~sia~rpgl 299 (563)
T PRK10712 238 LPMVVAGGLCIALSFAFGIEAFKEPGTLA------------------AALMQIGGGSAFALMVPVLAGYIAFSIADRPGL 299 (563)
T ss_pred HHHHHHhHHHHHHHHHhCccccCCccHHH------------------HHHHHhhhHHHHHHHHHHHHHHHHHHhcCCccc
Q ss_pred ccccccccccccCCCCCCChhHHHHHHhhhhHHHHHHHHhhhhcCccccccccccccchhhHHHHHHHHh
Q 040022 323 CNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLF 392 (490)
Q Consensus 323 ~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glf 392 (490)
.-|.+.|+++.+.++|++ ++++.|+++| +...+++++.|+-+.++.+--..+-=+++++.++++
T Consensus 300 apg~i~g~~a~~~~~GFl---G~Ilag~lag---yv~~~l~K~~~lP~~l~~l~piliiPllt~li~~~l 363 (563)
T PRK10712 300 TPGLIGGMLAVSTGSGFI---GGIIAGFLAG---YVAKLISTKLKLPQSMEALKPILIIPLISSLVVGLA 363 (563)
T ss_pred hHHHHHHHHHhcCCchHH---HHHHHHHHHH---HHHHHHHHhccCcHHHHhcCceeehhHHHHHHHHHH
No 25
>PF02653 BPD_transp_2: Branched-chain amino acid transport system / permease component; InterPro: IPR001851 This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as Escherichia coli LivH P08340 from SWISSPROT and LivM P22729 from SWISSPROT both of which are form the LIV-I transport system []. Also found with in this family are proteins from the galactose transport system permease [] and a ribose transport system []. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=22.14 E-value=1.9e+02 Score=28.48 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=41.1
Q ss_pred HhCcceeeccccccccccccccCCCCCC-ChhHHHHHHhhhhHHH-HHHHHhhhhcCcccc
Q 040022 313 IAGHWNVTDVCNGLLGGFAAITGGCSVV-DPWAAIICGFVAAWIL-IGCNKLAEKFKYDDP 371 (490)
Q Consensus 313 ~~~k~~~~~~~nG~LaGLVaITa~a~~v-~pw~A~iiG~iag~~~-~~~~~l~~kl~IDD~ 371 (490)
..|.+|+.+-..-.+++.++..-...+- ++|.+++++++.+.++ ....++..|+|.|..
T Consensus 24 ~~g~~nl~~~~~~~lga~~~~~~~~~~~~~~~l~~~~a~~~g~~~g~~~~~l~~r~~~~~~ 84 (267)
T PF02653_consen 24 ITGVINLGHGGFAGLGAYAAALLSSAFGPPWWLALPLAILVGALIGLLLGLLVARLRGDYF 84 (267)
T ss_pred HHCCccchhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhccceeeccccchh
Confidence 5677887766666666666555554443 3888888888888876 444567788888776
No 26
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=21.74 E-value=3.8e+02 Score=27.46 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHHHHHHHHc--CCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHH
Q 040022 216 IAGLWGALIEG--PRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAI 293 (490)
Q Consensus 216 ~~aL~~a~~lG--pR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
..+|.++.+++ ||..||.- |.-. . ..+.+..=|++|+-.+-|.|-..-..-.+ | |+...-..++.
T Consensus 63 llsL~vsrli~~~p~~~RF~~-Gfwh-l--EplvL~ing~ll~ll~lyAlinAl~~l~d---G------GR~v~~~~ai~ 129 (314)
T COG3965 63 LLSLLVSRLIAKDPRDARFPY-GFWH-L--EPLVLAINGTLLALLCLYALINALGSLLD---G------GREVEPGHAIA 129 (314)
T ss_pred HHHHHHHHHhccCCCccccCc-chhh-h--hhhHhhhccHHHHHHHHHHHHHHHHHHhc---C------CccccccHHHH
Confidence 45677777776 67667742 2111 1 13466777999988888888542211121 1 23234456667
Q ss_pred HhHHHHHHHHHHHHHHHHHHhC
Q 040022 294 TTTLAGCSAALTTLFGKRLIAG 315 (490)
Q Consensus 294 NT~la~a~g~lt~~~~~~~~~~ 315 (490)
-|.++...++..++...|..++
T Consensus 130 yt~~s~~~Ca~~~~~~~r~nrr 151 (314)
T COG3965 130 YTLVSVTGCAAIAWKLRRLNRR 151 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 7777777777778887776544
No 27
>PRK10666 ammonium transporter; Provisional
Probab=20.44 E-value=6.1e+02 Score=27.58 Aligned_cols=136 Identities=19% Similarity=0.084 Sum_probs=75.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccchh--hHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccCC
Q 040022 46 IDNTYLLFSAYLVFVMQLGFAMLCAGSVRAK--NTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAF 123 (490)
Q Consensus 46 ~d~~w~l~~~~lV~~M~~GfalleaG~vr~k--n~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~~~~ 123 (490)
-|..+.++.+++.++--+ -+++|+.... .+..+.+..++..+.+.+.|.++-|- -.++. ...+
T Consensus 218 hn~~~~~lGt~lLw~GW~---gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~--~~~~--------- 282 (428)
T PRK10666 218 HNLPMVFTGTAILYIGWF---GFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKP--SLLG--------- 282 (428)
T ss_pred CCHHHHHHHHHHHHHHHH---hccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC--CHHH---------
Confidence 355567777777666444 4566666433 35667777788888888998876543 22211 0000
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCcccc
Q 040022 124 PSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVID 203 (490)
Q Consensus 124 ~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~D 203 (490)
+.....| -.....+-++=.+...-++..+ ++++++....++ +.+ ++++.|
T Consensus 283 ----------~~nG~La---GLVaITa~a~~v~p~~A~iiG~-vag~v~~~~~~~-------l~~---------~~~iDD 332 (428)
T PRK10666 283 ----------ACSGAIA---GLVGVTPACGYVGVGGALIIGV-VAGLAGLWGVTM-------LKR---------WLRVDD 332 (428)
T ss_pred ----------HHHHHhh---hhhhcccccccCCHHHHHHHHH-HHHHHHHHHHHH-------HHh---------cCCCCC
Confidence 0011111 1111112233445555555555 333333221111 211 367899
Q ss_pred ccCcceehhhHHHHHHHHHHHHc
Q 040022 204 FAGSGVVHMVGGIAGLWGALIEG 226 (490)
Q Consensus 204 faGs~vVH~~gG~~aL~~a~~lG 226 (490)
--+.-.||.++|+.|....-+..
T Consensus 333 ~~~a~~vHgv~Gi~G~l~~glfa 355 (428)
T PRK10666 333 PCDVFGVHGVCGIVGCILTGIFA 355 (428)
T ss_pred CcCccHhhhHhHHHHHHHHHHhh
Confidence 99999999999999988887765
No 28
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=20.22 E-value=47 Score=33.54 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=45.8
Q ss_pred CcceeeccccccccccccccCCCC---C---CChhHHHHHHhhhhHHH----HHHHHhhhhcCcccccccccccc
Q 040022 315 GHWNVTDVCNGLLGGFAAITGGCS---V---VDPWAAIICGFVAAWIL----IGCNKLAEKFKYDDPLEAAQLHG 379 (490)
Q Consensus 315 ~k~~~~~~~nG~LaGLVaITa~a~---~---v~pw~A~iiG~iag~~~----~~~~~l~~kl~IDD~~~a~~vHg 379 (490)
.|.||.....|.+.|....+..+. + .+|++|++.|++=++.- ...+-++++.++.|.-.-.+=||
T Consensus 204 P~vSPnKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHG 278 (303)
T COG4589 204 PKVSPNKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHG 278 (303)
T ss_pred CCcCCcchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCc
Confidence 356778888888888776655543 2 36677776665544432 45677888899999988888887
Done!