Query 040022
Match_columns 490
No_of_seqs 150 out of 1367
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 1E-109 4E-114 865.0 29.5 392 44-477 2-394 (399)
2 1u7g_A Probable ammonium trans 100.0 5E-100 2E-104 790.1 29.1 374 42-454 4-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 3.6E-80 1.2E-84 643.5 24.3 337 62-476 28-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 3.3E-71 1.1E-75 585.9 25.7 357 63-476 77-451 (490)
5 3b9w_A Ammonium transporter fa 56.4 45 0.0015 34.4 9.7 144 43-226 172-315 (407)
6 3hd6_A Ammonium transporter RH 41.4 66 0.0023 34.0 8.2 105 289-395 92-207 (490)
7 2b2h_A AMT-1, ammonium transpo 20.8 5.9E+02 0.02 25.9 10.9 137 43-226 182-320 (399)
8 3k3f_A UREA transporter; membr 8.9 1.8E+02 0.006 29.2 2.9 59 291-353 51-113 (340)
9 2knc_B Integrin beta-3; transm 6.0 3E+02 0.01 21.5 2.4 21 337-357 4-24 (79)
10 2k9j_B Integrin beta-3; transm 5.5 4.6E+02 0.016 18.1 2.8 23 337-359 3-25 (43)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=1e-109 Score=865.02 Aligned_cols=392 Identities=30% Similarity=0.510 Sum_probs=363.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-ccccccC
Q 040022 44 YAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGK-HFFGLEA 122 (490)
Q Consensus 44 ~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~-~~f~~~~ 122 (490)
++.|+.|+|+|++|||+|||||+|+|+|++|+||+.|+++||++++++++++||++||+++||++.++|||. ++|++.+
T Consensus 2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~ 81 (399)
T 2b2h_A 2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG 81 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence 467999999999999999999999999999999999999999999999999999999999999765789998 5666655
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccc
Q 040022 123 FPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVI 202 (490)
Q Consensus 123 ~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~ 202 (490)
.+. .++.+++||++||+++++|++||++||+|+.+|++|+++|++++|||++||+|+ +|||. ++|++
T Consensus 82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~----------~lG~~ 148 (399)
T 2b2h_A 82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA----------KLGAL 148 (399)
T ss_dssp CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH----------HTTCC
T ss_pred CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH----------hcCCc
Confidence 432 238899999999999999999999999999999999999999999999999999 89997 48999
Q ss_pred cccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCC
Q 040022 203 DFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYY 282 (490)
Q Consensus 203 DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~ 282 (490)
|||||+|||++||++||+++++||||++|.+ +++||||++++++|+++||+||||||+||++..+
T Consensus 149 DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~-----~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~---------- 213 (399)
T 2b2h_A 149 DFAGGMVVHISSGFAALAVAMTIGKRAGFEE-----YSIEPHSIPLTLIGAALLWFGWFGFNGGSALAAN---------- 213 (399)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHCCCTTTTT-----SCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSS----------
T ss_pred cccCCeEEEechhHHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHhhcHHhhcccc----------
Confidence 9999999999999999999999999998632 4679999999999999999999999999988652
Q ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHHHHHHHHh
Q 040022 283 GQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNKL 362 (490)
Q Consensus 283 ~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~l 362 (490)
..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...++
T Consensus 214 ---~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l 289 (399)
T 2b2h_A 214 ---DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDF 289 (399)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999 999999999999999999999999999999999999999999888899
Q ss_pred hhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040022 363 AEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTL 442 (490)
Q Consensus 363 ~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w~~~~~~ii 442 (490)
++|+|||||||++++||+||+||+|++|+|++++.. + ..|++| ++.+|++.|++|++++++|+++.++++
T Consensus 290 ~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~----g-----~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~ 359 (399)
T 2b2h_A 290 RIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN----G-----YAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLIL 359 (399)
T ss_dssp HHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH----S-----CCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCceeccchhhHHHHHHHHHHcccccc----C-----CCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986531 1 137888 568999999999999999999999999
Q ss_pred HHHHhhccccCCChHHHHcCCCccccccccccCCC
Q 040022 443 FWLLNKLKLLRISTDEEMAGMDLTSHGGLAYAYHD 477 (490)
Q Consensus 443 ~~ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~ 477 (490)
++++|++.+||+++|||++|||.+||||++||++.
T Consensus 360 ~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~ 394 (399)
T 2b2h_A 360 AKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEH 394 (399)
T ss_dssp HHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred HHHHHhcccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence 99999999999999999999999999999999754
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=4.6e-100 Score=790.07 Aligned_cols=374 Identities=29% Similarity=0.508 Sum_probs=341.8
Q ss_pred ccccchhHHHHHHHHHHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCccccc-cccc
Q 040022 42 TGYAIDNTYLLFSAYLVFVMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGK-HFFG 119 (490)
Q Consensus 42 ~~~~~d~~w~l~~~~lV~~M~-~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~-~~f~ 119 (490)
..++.|+.|+|+|++|||+|| |||+|+|+|++|+||+.|+++||++|+++++++||++||+++||++ ++|||+ ++++
T Consensus 4 ~~~~~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~~ 82 (385)
T 1u7g_A 4 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM 82 (385)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchhh
Confidence 346789999999999999999 9999999999999999999999999999999999999999999975 789998 5666
Q ss_pred ccCCCCC-----CcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCc
Q 040022 120 LEAFPSP-----SFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNN 194 (490)
Q Consensus 120 ~~~~~~~-----~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~ 194 (490)
+.+.+.+ .+++.+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.
T Consensus 83 l~~~~~~~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~------- 154 (385)
T 1u7g_A 83 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA------- 154 (385)
T ss_dssp GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH-------
T ss_pred ccCCCCcccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhh-------
Confidence 6554322 2457899999999999999999999999999999999999999999999999999 79997
Q ss_pred ccccCccccccCcceehhhHHHHHHHHHHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhc
Q 040022 195 LLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKT 274 (490)
Q Consensus 195 ~~~~lG~~DfaGs~vVH~~gG~~aL~~a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~ 274 (490)
++|++|||||+|||++||++||+++++||||++| ++ +++||||++++++|+++||+||||||+||++..+
T Consensus 155 ---~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~-~~----~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~-- 224 (385)
T 1u7g_A 155 ---SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGF-GK----EAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTAN-- 224 (385)
T ss_dssp ---HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCT-TC----SSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSS--
T ss_pred ---hcceeeccCCeEEEecchHHHHHHHHHhcCCCCC-CC----CCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhcc--
Confidence 4899999999999999999999999999999985 22 5689999999999999999999999999988652
Q ss_pred cCCCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhH
Q 040022 275 YGESGSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAW 354 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~NT~la~a~g~lt~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~ 354 (490)
..++++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|+
T Consensus 225 -----------~~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~ 293 (385)
T 1u7g_A 225 -----------EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGL 293 (385)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred -----------chhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhhhcCccccccccccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHH
Q 040022 355 ILIGCNK-LAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITG 433 (490)
Q Consensus 355 ~~~~~~~-l~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~ 433 (490)
+|+...+ +++|+|||||||++++||+||+||+|++|+|++++.. + . ....|++++ +|++.|++|++++++
T Consensus 294 i~~~~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~----g-~-~~~~G~~~g---~ql~~Ql~g~~~~~~ 364 (385)
T 1u7g_A 294 AGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG----G-V-GFAEGVTMG---HQLLVQLESIAITIV 364 (385)
T ss_dssp HHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGT----C-C-CCCTTCCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHhcccccc----C-c-cccCCcchh---HHHHHHHHHHHHHHH
Confidence 9988776 6779999999999999999999999999999987631 1 1 011255553 599999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 040022 434 WVSVTMGTLFWLLNKLKLLRI 454 (490)
Q Consensus 434 w~~~~~~ii~~ilk~~~~LRv 454 (490)
|+++.++++++++|++.+|||
T Consensus 365 ~~~v~~~i~~~il~~~~glRv 385 (385)
T 1u7g_A 365 WSGVVAFIGYKLADLTVGLRV 385 (385)
T ss_dssp HHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHHHHHHccCCcC
Confidence 999999999999999999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=3.6e-80 Score=643.46 Aligned_cols=337 Identities=22% Similarity=0.237 Sum_probs=292.6
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccCCCCCCcchhhHHHHHHHHH
Q 040022 62 QLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAI 141 (490)
Q Consensus 62 ~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~~~~~~~~~~~~~~~fq~~Fa~ 141 (490)
.+||++|++++ |||..+.+.+|++..+ ..+.|++++|. + +|.. +.+.+...+++||++||+
T Consensus 28 ~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~--~-----Gf~~---------~g~ip~~~~~~fq~~Faa 88 (407)
T 3b9w_A 28 LVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA--N-----GIFG---------HALTPHSVDAVIYAEFAV 88 (407)
T ss_dssp HHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH--T-----TTTS---------SCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc--c-----cccC---------CCcchHHHHHHHHHHHHH
Confidence 46999999998 9999999999999855 77899999982 1 2221 112345789999999999
Q ss_pred HHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccccccCcceehhhHHHHHHHH
Q 040022 142 AAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWG 221 (490)
Q Consensus 142 taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aL~~ 221 (490)
++++|++||++||+|+.+|++|++ |.+++|||.+||+|+ +||+.. .|++|||||++||++||++||++
T Consensus 89 ~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~-gG~~~~----------~G~~DfAGs~vVH~~gG~~aLa~ 156 (407)
T 3b9w_A 89 ATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLD-NASGLT----------EGFQDSAGSIAIHAFGAYFGLGV 156 (407)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTT-CTTSSC----------TTCCCTTCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeC-Ccchhh----------cceeeccCceEEEeCchHHHHHH
Confidence 999999999999999999999995 678899999999998 788752 49999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHH
Q 040022 222 ALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCS 301 (490)
Q Consensus 222 a~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~ 301 (490)
+++||||.+|+++ + + +||||++++++|+++||+||||||+|. ..+ ..+.++++||++|+++
T Consensus 157 a~~LG~R~~~~~~--~-~-~~~hn~~~~~lGt~lLW~GWfGFN~Gl--~~~-------------~~~~~a~~NT~lAaaa 217 (407)
T 3b9w_A 157 SIALTTAAQRAQP--I-E-SDATSDRFSMLGSMVLWLFWPSFATAI--VPF-------------EQMPQTIVNTLLALCG 217 (407)
T ss_dssp HHHHCCHHHHTSC--C-C-CCHHHHHHHHHHHHHHHHHHHHHHHTT--SCG-------------GGHHHHHHHHHHHHHH
T ss_pred HHHhcCccccCCC--C-c-CCCCCHHHHHHHHHHHHHHHHhhhhhh--ccc-------------hhhHHHHHHhHHHHHH
Confidence 9999999877532 2 3 899999999999999999999999993 221 4678999999999999
Q ss_pred HHHHHHHHHHH-HhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhhHHHHHHHH-----hhhhcCcccccccc
Q 040022 302 AALTTLFGKRL-IAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAAWILIGCNK-----LAEKFKYDDPLEAA 375 (490)
Q Consensus 302 g~lt~~~~~~~-~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~~~~-----l~~kl~IDD~~~a~ 375 (490)
|+++|++++++ ++||+|+..++||+|||||||||+|++++||+|++||+++|++|+...+ +++|+|||||||++
T Consensus 218 g~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~ 297 (407)
T 3b9w_A 218 ATLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVH 297 (407)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCe
Confidence 99999999987 7899999999999999999999999999999999999999999987765 45679999999999
Q ss_pred ccccchhhHHHHHHHHhcccccccccCCCCCCCCcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 040022 376 QLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRIS 455 (490)
Q Consensus 376 ~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~gg~~~ql~~Ql~g~~vi~~w~~~~~~ii~~ilk~~~~LRv~ 455 (490)
++||+||+||+|++|+|+.+. + ..|++|++++++|+++.++++++++|+ |++
T Consensus 298 ~vHgv~Gi~G~l~~glfa~~~--------------~----------~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~ 349 (407)
T 3b9w_A 298 NLHGLPGLLGGFSAILIVPGI--------------A----------VAQLTGIGITLALALIGGVIAGALIKL----TGT 349 (407)
T ss_dssp HHTTHHHHHHHHHHHHHSTTC--------------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCC
T ss_pred ecchHHHHHHHHHHHHHccCC--------------c----------HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 999999999999999998642 1 159999999999999999999999998 999
Q ss_pred hHHHHcC--------CCccccccccccCC
Q 040022 456 TDEEMAG--------MDLTSHGGLAYAYH 476 (490)
Q Consensus 456 ~e~E~~G--------lD~~~hg~~ay~~~ 476 (490)
+|+|.+| +|.+||||++||..
T Consensus 350 ~e~e~~g~~~we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 350 TKQAYEDSHEFIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp CSSTTCGGGTSSSCCCGGGC---------
T ss_pred HHHHcCCcccccCccccHHHhchhhccch
Confidence 9999999 99999999999853
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-71 Score=585.87 Aligned_cols=357 Identities=20% Similarity=0.169 Sum_probs=289.4
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccCCCCCCcchhhHHHHHHHHHH
Q 040022 63 LGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIA 142 (490)
Q Consensus 63 ~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~~~~~~~~~~~~~~~fq~~Fa~t 142 (490)
.||.+|-.=+ ||.--+.+--|++..+++ +.|-++=-++-.. + .+.+.+...+++||++||++
T Consensus 77 ~GfGFLmtfl--kryg~ssv~~n~l~~a~~-~Qwa~l~~g~~~~-----------~----~~g~ip~~~~~~fq~~Faa~ 138 (490)
T 3hd6_A 77 VGFGFLMTFL--QRYGFSAVGFNFLLAAFG-IQWALLMQGWFHF-----------L----QDRYIVVGVENLINADFCVA 138 (490)
T ss_dssp THHHHHGGGS--TTCHHHHHHHHHHHHHHH-HHHHHHHHHHTTC-----------B----TTTBEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhccHHHHHHHHHHHHH-HHHHHHHHHHhcc-----------c----cCCCccHHHHHHHHHHHHHH
Confidence 3666665433 344455566677777765 7777653333110 0 01112457899999999999
Q ss_pred HHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccccccCcceehhhHHHHHHHHH
Q 040022 143 AAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 222 (490)
Q Consensus 143 aatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aL~~a 222 (490)
+++|++||++||+|+.+|++|++++ +++||+ .||+ ||. ++|++|||||++||++||++||+++
T Consensus 139 t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~-----~L~----------~lG~~DFAGs~vVH~~gG~aaLa~a 201 (490)
T 3hd6_A 139 SVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI-----LLN----------LLKVKDAGGSMTIHTFGAYFGLTVT 201 (490)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH-----HHT----------TSCCCCTTCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH-----HHh----------ccCceeecCceeeeHHHHHHHHHHH
Confidence 9999999999999999999999875 779998 4666 454 4899999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCccCCCChHHHHHhHHHHHHHhhccccccchhhhhccCCCCCCCCcchhHHHHHHHhHHHHHHH
Q 040022 223 LIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGESGSYYGQWSAIGRTAITTTLAGCSA 302 (490)
Q Consensus 223 ~~lGpR~grf~~~g~~~~~~~hn~~l~~lG~~lLw~GW~gFN~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g 302 (490)
++||||. |++ +.+++++++||++++++|+++||+||||||+|++.. ...+.++++||++|+|+|
T Consensus 202 ~vLG~R~-~~~-~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~--------------~~~~~~a~~NT~lAaAag 265 (490)
T 3hd6_A 202 RILYRRN-LEQ-SKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH--------------GDSQHRAAINTYCSLAAC 265 (490)
T ss_dssp HHTCCTT-GGG-GTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS--------------HHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc-ccc-CCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc--------------chHHHHHHHHHHHHHHHH
Confidence 9999885 432 223456789999999999999999999999998642 135789999999999999
Q ss_pred HHHHHHHHHH--HhCcceeeccccccccccccccCCCC-CCChhHHHHHHhhhhHHHHHHHH-----hhhhcCccccccc
Q 040022 303 ALTTLFGKRL--IAGHWNVTDVCNGLLGGFAAITGGCS-VVDPWAAIICGFVAAWILIGCNK-----LAEKFKYDDPLEA 374 (490)
Q Consensus 303 ~lt~~~~~~~--~~~k~~~~~~~nG~LaGLVaITa~a~-~v~pw~A~iiG~iag~~~~~~~~-----l~~kl~IDD~~~a 374 (490)
+++|++++++ ++||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+...+ +++|+|||||||+
T Consensus 266 ~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv 345 (490)
T 3hd6_A 266 VLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGI 345 (490)
T ss_dssp HHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccc
Confidence 9999999986 58999999999999999999999999 69999999999999999977754 5678999999999
Q ss_pred cccccchhhHHHHHHHHhcccccccccCCCCCCCCccccc--------C--CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040022 375 AQLHGGCGAWGVIFTGLFAKESYVNEVYPGKPGRPYGLFM--------G--GGGKLLAAHIVQILVITGWVSVTMGTLFW 444 (490)
Q Consensus 375 ~~vHg~~Gi~G~l~~glfa~~~~~~~~y~~~~~~~~G~~~--------g--g~~~ql~~Ql~g~~vi~~w~~~~~~ii~~ 444 (490)
+++||+||+||+|++|+|+.... ...|+ ..|+++ + ++++|++.|++|++++++|+++.++++++
T Consensus 346 ~~vHGv~Gi~G~l~~glfa~~~~-~~~~g-----~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~ 419 (490)
T 3hd6_A 346 NNLHGIPGIIGGIVGAVTAASAS-LEVYG-----KEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGL 419 (490)
T ss_dssp HHHTHHHHHHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHHhcccc-ccccc-----cCcceeccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987531 11222 125543 2 24789999999999999999999999999
Q ss_pred HHhhccccCCChHHHHcCCCccccccccccCC
Q 040022 445 LLNKLKLLRISTDEEMAGMDLTSHGGLAYAYH 476 (490)
Q Consensus 445 ilk~~~~LRv~~e~E~~GlD~~~hg~~ay~~~ 476 (490)
++|+..++|+++|+|.+|+|..|+.++.|+..
T Consensus 420 iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~ 451 (490)
T 3hd6_A 420 ILRLPFWGQPSDENCFEDAVYWEMPEGNSTVY 451 (490)
T ss_dssp HHTSTTSCCCCTTSTTCGGGTSCCCTTTC---
T ss_pred HHhhccCCCCCHHHHhCCCceeecCccccccc
Confidence 99999999999999999999999999999854
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=56.37 E-value=45 Score=34.45 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=85.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccccC
Q 040022 43 GYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGLEA 122 (490)
Q Consensus 43 ~~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~~~ 122 (490)
...-|..+.++.+++.|+--+| +++|+.....+.++++...+..+.+++.|.++-+-+-.|+.
T Consensus 172 ~~~hn~~~~~lGt~lLW~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~-------------- 234 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVLWLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA-------------- 234 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--------------
Confidence 4455677888888888875555 56776555667788888899999999999998775534421
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCccc
Q 040022 123 FPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVI 202 (490)
Q Consensus 123 ~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG~~ 202 (490)
+.. .....+.| -.....+-++=.+...-++..++ +++++.....+. .-+|. .++++.
T Consensus 235 ------~~~-~~~nG~LA---GLVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l---~~~l~---------~~l~iD 291 (407)
T 3b9w_A 235 ------SIV-DMANAALA---GGVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI---QPMLE---------SKAKTI 291 (407)
T ss_dssp ------CHH-HHHHHTTH---HHHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH---HHHHH---------HHSCCC
T ss_pred ------CHH-HHHHhhhh---hhheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH---HHHHH---------hcCCCC
Confidence 110 01111111 11111222233555555555553 333332211110 00111 247899
Q ss_pred cccCcceehhhHHHHHHHHHHHHc
Q 040022 203 DFAGSGVVHMVGGIAGLWGALIEG 226 (490)
Q Consensus 203 DfaGs~vVH~~gG~~aL~~a~~lG 226 (490)
|--|.-.||.++|+.|...+-+..
T Consensus 292 D~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 292 DTCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp CTTCHHHHTTHHHHHHHHHHHHHS
T ss_pred CCCCCeecchHHHHHHHHHHHHHc
Confidence 999999999999999998887764
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=41.41 E-value=66 Score=34.01 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=69.5
Q ss_pred HHHHHHhHHHHHHHHHHHH-HHHHH----HhCcc--eeecccccc---ccccccccCCCCCCChhHHHHHHhhhhHHHHH
Q 040022 289 GRTAITTTLAGCSAALTTL-FGKRL----IAGHW--NVTDVCNGL---LGGFAAITGGCSVVDPWAAIICGFVAAWILIG 358 (490)
Q Consensus 289 ~~~~~NT~la~a~g~lt~~-~~~~~----~~~k~--~~~~~~nG~---LaGLVaITa~a~~v~pw~A~iiG~iag~~~~~ 358 (490)
+.+..|-++++-+ +=|- +++-+ ..+|. .+..+.+.. .+-.+...+-++-+++.+-++..++..++|..
T Consensus 92 ssv~~n~l~~a~~--~Qwa~l~~g~~~~~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l~~~vY~~ 169 (490)
T 3hd6_A 92 SAVGFNFLLAAFG--IQWALLMQGWFHFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAV 169 (490)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHTTCBTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 3455777766644 3333 23322 12332 112333333 34444555667899999999999888777755
Q ss_pred HHHh-hhhcCccccccccccccchhhHHHHHHHHhccc
Q 040022 359 CNKL-AEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKE 395 (490)
Q Consensus 359 ~~~l-~~kl~IDD~~~a~~vHg~~Gi~G~l~~glfa~~ 395 (490)
..++ +.+++..|--+...||-.+|..|+..+-+..++
T Consensus 170 ~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R 207 (490)
T 3hd6_A 170 NEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR 207 (490)
T ss_dssp HHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCT
T ss_pred hHHHHHhccCceeecCceeeeHHHHHHHHHHHHhcCCc
Confidence 5443 578999999999999999999998888777654
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=20.82 E-value=5.9e+02 Score=25.93 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=84.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCcccccccccc
Q 040022 43 GYAIDNTYLLFSAYLVFVMQLGFAMLCAGSVRA--KNTMNIMLTNVLDAATGGLFYYLFGFAFAFGNPSNGFIGKHFFGL 120 (490)
Q Consensus 43 ~~~~d~~w~l~~~~lV~~M~~GfalleaG~vr~--kn~~nil~kn~~~~~v~~l~~~l~Gy~lafG~~~~~fiG~~~f~~ 120 (490)
...-|..+.++.+++.|+--+|| ++|+.-. ..+..+++...+..+.+.+.|.++-|-. |+.
T Consensus 182 ~~~hn~~~~~lG~~lLW~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~------------ 244 (399)
T 2b2h_A 182 IEPHSIPLTLIGAALLWFGWFGF---NGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP------------ 244 (399)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh---cHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC------------
Confidence 34557778888888888777775 5554433 3466777888889999999999987755 431
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHhhhhccccceeeeeeCCCCcCCCCCCCCcccccCc
Q 040022 121 EAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSG 200 (490)
Q Consensus 121 ~~~~~~~~~~~~~~fq~~Fa~taatIvsGavaeR~~~~a~~i~~~l~~~~vYpv~ahWvW~~~GWL~~~~~~~~~~~~lG 200 (490)
+.. ...+.+.|- .....+-++=.+...-++..++ +++++.... ++. .|++
T Consensus 245 --------~~~-~~~nG~lAG---LVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~--------~l~---------~kl~ 294 (399)
T 2b2h_A 245 --------GSL-GIVSGAIAG---LAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM--------DFR---------IKKK 294 (399)
T ss_dssp --------CHH-HHHHHHHHH---HHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH--------HHH---------HHTT
T ss_pred --------CHH-HHHHHHHHh---hhhhccccccCCHHHHHHHHHH-HHHHHHHHH--------HHH---------HHcC
Confidence 111 111111111 1111222344566666666653 333332211 121 2588
Q ss_pred cccccCcceehhhHHHHHHHHHHHHc
Q 040022 201 VIDFAGSGVVHMVGGIAGLWGALIEG 226 (490)
Q Consensus 201 ~~DfaGs~vVH~~gG~~aL~~a~~lG 226 (490)
+.|--|.-.||.++|..|...+-+..
T Consensus 295 iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 295 IDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCceeccchhhHHHHHHHHHHc
Confidence 99999999999999999988887664
No 8
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=8.89 E-value=1.8e+02 Score=29.21 Aligned_cols=59 Identities=17% Similarity=-0.016 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHH----HHhCcceeeccccccccccccccCCCCCCChhHHHHHHhhhh
Q 040022 291 TAITTTLAGCSAALTTLFGKR----LIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAIICGFVAA 353 (490)
Q Consensus 291 ~~~NT~la~a~g~lt~~~~~~----~~~~k~~~~~~~nG~LaGLVaITa~a~~v~pw~A~iiG~iag 353 (490)
..+...+++..+.+++.+..+ +..| ..-.||+|+|+...+-.......|..+++|.+-.
T Consensus 51 ~a~~allG~~~stltA~llg~~~~~i~~G----L~GfNg~Lvglal~~f~~~~~~~~~l~i~~~~ls 113 (340)
T 3k3f_A 51 LGVCAVLGTAASTLTAQLLGVDKPLVRAG----LFGFNGTLAGIALPFFFNYEPAMLGYVALNGAFT 113 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHTT----TTTHHHHHHHHHHHHHBCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhh----hhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 445566666677666666431 2222 3457999999875443333344454444444433
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.97 E-value=3e+02 Score=21.52 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHhhhhHHHH
Q 040022 337 CSVVDPWAAIICGFVAAWILI 357 (490)
Q Consensus 337 a~~v~pw~A~iiG~iag~~~~ 357 (490)
|.--.+..++++|+++|++.+
T Consensus 4 Cp~~~n~~~Iv~gvi~gilli 24 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLI 24 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHH
Confidence 433445677778888887653
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=5.47 E-value=4.6e+02 Score=18.06 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHhhhhHHHHHH
Q 040022 337 CSVVDPWAAIICGFVAAWILIGC 359 (490)
Q Consensus 337 a~~v~pw~A~iiG~iag~~~~~~ 359 (490)
|.--.+..+++.|+++|++.+..
T Consensus 3 Cp~~~n~~~Iv~gvi~~ivliGl 25 (43)
T 2k9j_B 3 SPKGPDILVVLLSVMGAILLIGL 25 (43)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEeehHHHHHHHHHHHHH
Confidence 33345677888899988775433
Done!