RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 040022
         (490 letters)



>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score =  178 bits (453), Expect = 5e-52
 Identities = 108/417 (25%), Positives = 172/417 (41%), Gaps = 45/417 (10%)

Query: 45  AIDNTYLLFSAYLVFVMQL-GFAMLCAGSVRAKNTMNIMLTNVLDAATGGLFYYLFGFAF 103
             DN +++    LV  M + G A+   G +R KN ++++    +  A   + + ++G++ 
Sbjct: 5   KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSL 64

Query: 104 AFGNPSNGFIGKHFFGLEAFPS-----PSFDYGYFLYQWAFAIAAAGITSGSIAERTQFV 158
           A G  +N F   ++  L+           + Y +  +Q +FA    G+  G++AER +F 
Sbjct: 65  ASGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFP 124

Query: 159 AYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNNLLFGSGVIDFAGSGVVHMVGGIAG 218
           A LI+      L Y  ++H  W     AS            G +DFAG  VVH+   IAG
Sbjct: 125 AVLIFVVVWLTLSYIPIAHMVWGGGLLAS-----------HGALDFAGGTVVHINAAIAG 173

Query: 219 LWGALIEGPRIGKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGFNPGSFVYILKTYGES 278
           L GA + G R+G           + H+  +V  GT +L+ GW+GFN              
Sbjct: 174 LVGAYLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNA------------- 215

Query: 279 GSYYGQWSAIGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCS 338
           GS            + T +A  +A L  +FG+  + G  ++   C+G + G   +T  C 
Sbjct: 216 GSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACG 275

Query: 339 VVDPWAAIICGFVAAWIL-IGCNKLAEKFKYDDPLEAAQLHGGCGAWGVIFTGLFAKESY 397
            +    A+I G VA      G   L    + DDP +   +HG CG  G I TG+FA  S 
Sbjct: 276 YIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 335

Query: 398 VNEVYPGKPGRPYGLFMGGGGKLLAAHIVQILVITGWVSVTMGTLFWLLNKLKLLRI 454
                    G          G  L   +  I +   W  V     + L +    LR+
Sbjct: 336 ---------GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 32.0 bits (73), Expect = 0.15
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 135 YQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVS---------HWFWSSDGW 185
             W  +I     TS + AE    +  L+ +   TG ++   +          WF     W
Sbjct: 363 MIWPMSIMMKAFTSQNDAEIKTCIKMLMDTDAGTGFMHESFNKNDPKNFTRAWF----AW 418

Query: 186 ASPTRTDNNLLFGSGVIDFAGSGVVHMVGGI 216
                   N LFG  ++     G V ++  I
Sbjct: 419 Q-------NTLFGELILKLVNEGKVDLLNSI 442


>d1ecia_ a.33.1.1 (A:) Ectatomin subunit A, EA {Ant (Ectatomma
           tuberculatum), venom [TaxId: 39300]}
          Length = 37

 Score = 26.6 bits (58), Expect = 0.72
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 337 CSVVDPWAAIICGFVAAWILIGCNKL 362
           C  V+PWA    G +A +I   C KL
Sbjct: 12  CPTVEPWAKKCSGDIATYIKRECGKL 37


>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
           {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 29.0 bits (65), Expect = 1.4
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 27/108 (25%)

Query: 107 NPSNGFIGKHFFGLEAFPSPSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSF 166
           N    F GK   G+    SP     Y    W  A++  G+T+ +  E  Q +  L  +  
Sbjct: 333 NR-FFFEGKAAKGIG---SPHTPDQYI---WHIALSMQGLTTNNQEEIDQLIKLLKETDA 385

Query: 167 LTGLVYPIVS---------HWFWSSDGWASPTRTDNNLLFGSGVIDFA 205
            TG ++              WF     W+       N LF   + +  
Sbjct: 386 GTGYMHEGFHVDDPTKFTRDWF----AWS-------NSLFSHFIYEKV 422


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 28.3 bits (62), Expect = 2.7
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 2/95 (2%)

Query: 135 YQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPTRTDNN 194
             WA                ++   +L+Y+S  TG    +         G     R    
Sbjct: 218 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMR--YT 275

Query: 195 LLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRI 229
                  + F    +  + G    ++G L+ G   
Sbjct: 276 FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310


>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
           scrofa), cytosolic form [TaxId: 9823]}
          Length = 412

 Score = 27.2 bits (59), Expect = 5.3
 Identities = 18/144 (12%), Positives = 35/144 (24%), Gaps = 4/144 (2%)

Query: 230 GKFDHNDRPATMRGHSGTLVVLGTFLLWFGWYGF--NPGSFVYILKTYGESGSYYGQWSA 287
                  R   ++   GT  +         WY    N  + VY+        ++ G ++ 
Sbjct: 92  SPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTW--ENHNGVFTT 149

Query: 288 IGRTAITTTLAGCSAALTTLFGKRLIAGHWNVTDVCNGLLGGFAAITGGCSVVDPWAAII 347
            G   I +     +          L             L       TG     + W  I 
Sbjct: 150 AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIA 209

Query: 348 CGFVAAWILIGCNKLAEKFKYDDP 371
                 ++    +   + F   + 
Sbjct: 210 SVMKRRFLFPFFDSAYQGFASGNL 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.457 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,963,358
Number of extensions: 96310
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 23
Length of query: 490
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,185,626
Effective search space: 475436026
Effective search space used: 475436026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)