Query 040024
Match_columns 69
No_of_seqs 113 out of 386
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1589 Uncharacterized conser 100.0 6.6E-41 1.4E-45 223.0 4.9 67 3-69 8-100 (118)
2 PF03650 MPC: Uncharacterised 100.0 5.7E-39 1.2E-43 214.4 4.3 69 1-69 2-96 (119)
3 KOG1590 Uncharacterized conser 99.9 4.4E-28 9.5E-33 163.9 3.5 67 3-69 9-104 (132)
4 COG3926 zliS Lysozyme family p 63.8 10 0.00023 28.6 3.4 39 30-68 211-250 (252)
5 PF14795 Leucyl-specific: Leuc 54.5 5.2 0.00011 23.9 0.4 7 17-23 50-56 (56)
6 PF06454 DUF1084: Protein of u 24.2 83 0.0018 23.2 2.7 25 42-66 26-50 (281)
7 PF06611 DUF1145: Protein of u 24.0 1.6E+02 0.0035 17.3 3.5 36 27-63 14-49 (61)
8 PRK10910 hypothetical protein; 22.4 1.6E+02 0.0035 18.8 3.5 37 26-63 13-49 (89)
9 PF05285 SDA1: SDA1; InterPro 15.2 1.5E+02 0.0031 22.4 2.3 17 51-67 19-35 (324)
10 PF08024 Antimicrobial_4: Ant 14.7 46 0.00099 16.8 -0.3 9 21-29 1-9 (24)
No 1
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.6e-41 Score=223.04 Aligned_cols=67 Identities=60% Similarity=1.085 Sum_probs=64.9
Q ss_pred HHHHHHHcCCCCCcceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHHHH
Q 040024 3 NKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFAMAR 56 (69)
Q Consensus 3 ~~~~~~~~~pagp~TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~~~ 56 (69)
+++|++|||||||||||||||++|||||+|||+|++|+| ||||+|||||+|+++
T Consensus 8 ~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~ 87 (118)
T KOG1589|consen 8 AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAI 87 (118)
T ss_pred HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHH
Confidence 689999999999999999999999999999999999976 999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 040024 57 TGLYQLSRKIKQN 69 (69)
Q Consensus 57 ~~~~ql~R~~~y~ 69 (69)
+|+|||.|+++|+
T Consensus 88 tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 88 TGIYQLTRIANYQ 100 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999983
No 2
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=5.7e-39 Score=214.39 Aligned_cols=69 Identities=52% Similarity=0.916 Sum_probs=66.1
Q ss_pred ChHHHHHHHcCCCCCcceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHHH
Q 040024 1 ITNKLLAFWNHPAGPKTIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFAM 54 (69)
Q Consensus 1 ~~~~~~~~~~~pagp~TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~~ 54 (69)
.++++|++||||+||||||||||++|||||||||+|++|+| ||||+||+||++|
T Consensus 2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 81 (119)
T PF03650_consen 2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN 81 (119)
T ss_pred hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence 36789999999999999999999999999999999999976 9999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 040024 55 ARTGLYQLSRKIKQN 69 (69)
Q Consensus 55 ~~~~~~ql~R~~~y~ 69 (69)
+++|+||++|+++|+
T Consensus 82 ~~~q~~Ql~R~~~y~ 96 (119)
T PF03650_consen 82 ATTQLYQLYRKLNYQ 96 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 3
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=4.4e-28 Score=163.95 Aligned_cols=67 Identities=30% Similarity=0.523 Sum_probs=62.5
Q ss_pred HHHHHHHcCCCCCc---ceeecccccchhhhhhhhhhhcccc--------------------------cchhHHHHHHHH
Q 040024 3 NKLLAFWNHPAGPK---TIHFWAPTFKWGISIANIADFSNYN--------------------------MKNWNLFSVNFA 53 (69)
Q Consensus 3 ~~~~~~~~~pagp~---TvhFWaP~~kWglviAgl~D~~r~p--------------------------P~N~~L~~~n~~ 53 (69)
.+++.+.+++-+++ |||||||++|||||||+|.||+++| ||||+||+||++
T Consensus 9 r~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~ 88 (132)
T KOG1590|consen 9 RRFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHAT 88 (132)
T ss_pred HHHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhh
Confidence 45678889999986 7999999999999999999999987 999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 040024 54 MARTGLYQLSRKIKQN 69 (69)
Q Consensus 54 ~~~~~~~ql~R~~~y~ 69 (69)
|+.+|++|++|.++|+
T Consensus 89 N~taQ~~Qg~Rf~~~~ 104 (132)
T KOG1590|consen 89 NETAQLAQGSRFLNYN 104 (132)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 4
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=63.77 E-value=10 Score=28.55 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=34.3
Q ss_pred hhhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 040024 30 SIANIADFSNY-NMKNWNLFSVNFAMARTGLYQLSRKIKQ 68 (69)
Q Consensus 30 viAgl~D~~r~-pP~N~~L~~~n~~~~~~~~~ql~R~~~y 68 (69)
.+.|+.|++.- .|-.|-|.++=++.++++++|+.|+++.
T Consensus 211 ~~sG~~~~~~~~~P~~~ala~~~~A~~g~gl~~~~~~~~~ 250 (252)
T COG3926 211 LLSGLYDLQNQLSPLSYALASAVLAIGGLGLWYFNRKVKH 250 (252)
T ss_pred cccchhhcccCCCchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 37788888864 4999999999999999999999999875
No 5
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=54.52 E-value=5.2 Score=23.93 Aligned_cols=7 Identities=71% Similarity=1.887 Sum_probs=6.4
Q ss_pred ceeeccc
Q 040024 17 TIHFWAP 23 (69)
Q Consensus 17 TvhFWaP 23 (69)
|+|||-|
T Consensus 50 ~~h~WKP 56 (56)
T PF14795_consen 50 TLHFWKP 56 (56)
T ss_dssp SEEEEEE
T ss_pred eEeecCC
Confidence 8999987
No 6
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=24.16 E-value=83 Score=23.25 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHh
Q 040024 42 MKNWNLFSVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 42 P~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
--+|.|++.-...+..+++|+.|..
T Consensus 26 ~~~~~La~iy~~v~~~aliQl~ri~ 50 (281)
T PF06454_consen 26 GLFYALAAIYLLVALVALIQLIRIQ 50 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 5678999999999999999999964
No 7
>PF06611 DUF1145: Protein of unknown function (DUF1145); InterPro: IPR009525 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.01 E-value=1.6e+02 Score=17.31 Aligned_cols=36 Identities=17% Similarity=-0.010 Sum_probs=23.6
Q ss_pred hhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 040024 27 WGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLS 63 (69)
Q Consensus 27 WglviAgl~D~~r~pP~N~~L~~~n~~~~~~~~~ql~ 63 (69)
|++.++++.- --+.|-|+.+-.+=.++....+.|+.
T Consensus 14 W~~~l~Nl~~-Pfp~p~~~~l~i~~~~~l~mH~lq~~ 49 (61)
T PF06611_consen 14 WLVLLLNLFH-PFPGPLNIFLNIAGAFLLLMHGLQLL 49 (61)
T ss_pred HHHHHHHHhc-cCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888852 11226677777777777777777753
No 8
>PRK10910 hypothetical protein; Provisional
Probab=22.38 E-value=1.6e+02 Score=18.84 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=24.5
Q ss_pred chhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 040024 26 KWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLS 63 (69)
Q Consensus 26 kWglviAgl~D~~r~pP~N~~L~~~n~~~~~~~~~ql~ 63 (69)
=|++.+.++.- .-+-|-|+.+-.+=+++....+.|+.
T Consensus 13 vW~~ll~NL~~-PFp~pl~~~l~ia~~f~~~MH~lQ~l 49 (89)
T PRK10910 13 VWGFLILNLVH-PFPRPLNIFVNVALIFMVLMHGLQLA 49 (89)
T ss_pred HHHHHHHHHcc-cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 37788877762 11227777777777777777777764
No 9
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=15.21 E-value=1.5e+02 Score=22.37 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040024 51 NFAMARTGLYQLSRKIK 67 (69)
Q Consensus 51 n~~~~~~~~~ql~R~~~ 67 (69)
++.|++=+++||||-++
T Consensus 19 ~V~~Aarsli~l~Rev~ 35 (324)
T PF05285_consen 19 GVMMAARSLINLFREVN 35 (324)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 67899999999999764
No 10
>PF08024 Antimicrobial_4: Ant antimicrobial peptide; InterPro: IPR012523 This family consists of the ponericin family of antimicrobial peptides isolated from predatory ant Pachycondyla goeldii (Ponerine ant). The ponericin peptides may adopt amphipathic alpha-helical structure in polar environments. In the ant colony, these peptides exhibit a defensive role against microbial pathogens arising from prey introduction and/or ingestion [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=14.71 E-value=46 Score=16.84 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=7.4
Q ss_pred cccccchhh
Q 040024 21 WAPTFKWGI 29 (69)
Q Consensus 21 WaP~~kWgl 29 (69)
||-++||++
T Consensus 1 wGtl~K~~~ 9 (24)
T PF08024_consen 1 WGTLAKIGA 9 (24)
T ss_pred CcHHHHHHH
Confidence 778888887
Done!