Query 040024
Match_columns 69
No_of_seqs 113 out of 386
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a5p_A Haemagglutinin I; lecti 28.8 13 0.00046 23.3 0.3 11 10-20 42-52 (104)
2 1q90_R Cytochrome B6-F complex 17.9 98 0.0033 16.9 2.4 33 34-66 6-38 (49)
3 2sas_A Sarcoplasmic calcium-bi 12.6 1.1E+02 0.0038 17.7 1.8 21 4-24 164-184 (185)
4 1ci4_A Protein (barrier-TO-aut 11.5 1.3E+02 0.0043 18.5 1.8 18 1-18 3-20 (89)
5 2amn_A Cathelicidin; linear he 8.4 1.3E+02 0.0046 14.6 0.9 14 54-67 11-24 (26)
6 3fbl_A Putative uncharacterize 8.3 1.1E+02 0.0039 18.2 0.7 11 23-33 18-28 (82)
7 3hjr_A Extracellular serine pr 7.6 63 0.0021 24.1 -0.8 16 17-32 535-552 (600)
8 1jb0_X Photosystem I subunit P 7.5 2.4E+02 0.0082 14.6 1.7 11 46-56 18-28 (35)
9 1waz_A MERF; protein structure 7.2 2.1E+02 0.0071 15.7 1.4 45 23-69 2-46 (46)
10 2hls_A Protein disulfide oxido 5.7 3.3E+02 0.011 17.7 2.1 22 3-24 15-36 (243)
No 1
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum polycephalum}
Probab=28.79 E-value=13 Score=23.26 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=9.0
Q ss_pred cCCCCCcceee
Q 040024 10 NHPAGPKTIHF 20 (69)
Q Consensus 10 ~~pagp~TvhF 20 (69)
-+..||||+|-
T Consensus 42 fseigpktvhq 52 (104)
T 3a5p_A 42 FSEIGPKTVHQ 52 (104)
T ss_dssp EECCSCCCSSS
T ss_pred ehhcCCceeee
Confidence 46789999985
No 2
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=17.91 E-value=98 Score=16.87 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=26.8
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 040024 34 IADFSNYNMKNWNLFSVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 34 l~D~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
.-||.|..==|++++..-.++++.-++-+.|++
T Consensus 6 ~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 457778777789999999999998888887764
No 3
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=12.58 E-value=1.1e+02 Score=17.68 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=14.2
Q ss_pred HHHHHHcCCCCCcceeecccc
Q 040024 4 KLLAFWNHPAGPKTIHFWAPT 24 (69)
Q Consensus 4 ~~~~~~~~pagp~TvhFWaP~ 24 (69)
.++.++.++......|+|||+
T Consensus 164 ~~~~~~~s~~~~~~~~~~g~~ 184 (185)
T 2sas_A 164 LYYRLLTSPAADAGNTLMGQK 184 (185)
T ss_dssp HHHHHHHCSSCSGGGGGGTCC
T ss_pred HHHHHhcCCCCCCcccccccC
Confidence 456777776633457889986
No 4
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=11.51 E-value=1.3e+02 Score=18.51 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.6
Q ss_pred ChHHHHHHHcCCCCCcce
Q 040024 1 ITNKLLAFWNHPAGPKTI 18 (69)
Q Consensus 1 ~~~~~~~~~~~pagp~Tv 18 (69)
++.+.|.|...|.|-|.|
T Consensus 3 ts~Kh~~Fv~EPmgeK~V 20 (89)
T 1ci4_A 3 TSQKHRDFVAEPMGEKPV 20 (89)
T ss_dssp SCHHHHHHHTSCCTTCCG
T ss_pred ccHHHHHHHhCCCCCCCc
Confidence 468899999999998877
No 5
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=8.36 E-value=1.3e+02 Score=14.60 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhh
Q 040024 54 MARTGLYQLSRKIK 67 (69)
Q Consensus 54 ~~~~~~~ql~R~~~ 67 (69)
......|+|+|.++
T Consensus 11 ~tv~ag~nly~aik 24 (26)
T 2amn_A 11 RTVIAGYNLYRAIK 24 (26)
T ss_dssp HHHHHHHSSSHHHH
T ss_pred EEEeehhHHHHHHh
Confidence 44455566666554
No 6
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=8.31 E-value=1.1e+02 Score=18.23 Aligned_cols=11 Identities=55% Similarity=1.120 Sum_probs=8.8
Q ss_pred cccchhhhhhh
Q 040024 23 PTFKWGISIAN 33 (69)
Q Consensus 23 P~~kWglviAg 33 (69)
|-.|||+-||=
T Consensus 18 pnikwgmyiaf 28 (82)
T 3fbl_A 18 PNIKWGMYIAF 28 (82)
T ss_dssp CGGGHHHHHHH
T ss_pred CcchhHHHHHH
Confidence 67799998873
No 7
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=7.61 E-value=63 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.542 Sum_probs=13.3
Q ss_pred ceeecc--cccchhhhhh
Q 040024 17 TIHFWA--PTFKWGISIA 32 (69)
Q Consensus 17 TvhFWa--P~~kWglviA 32 (69)
|+|||| |.=+|-|-|.
T Consensus 535 s~~~wGE~~~G~WtL~V~ 552 (600)
T 3hjr_A 535 SNKFYGESAQGTWRLEVT 552 (600)
T ss_dssp ECTTTTCBCCEEEEEEEE
T ss_pred cccccCCCCCccEEEEEE
Confidence 789998 8889999764
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.46 E-value=2.4e+02 Score=14.59 Aligned_cols=11 Identities=36% Similarity=0.612 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 040024 46 NLFSVNFAMAR 56 (69)
Q Consensus 46 ~L~~~n~~~~~ 56 (69)
+|.+.||.+++
T Consensus 18 llLaINflVAa 28 (35)
T 1jb0_X 18 LLLAINFLVAA 28 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57777877664
No 9
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=7.20 E-value=2.1e+02 Score=15.66 Aligned_cols=45 Identities=13% Similarity=0.342 Sum_probs=24.5
Q ss_pred cccchhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 040024 23 PTFKWGISIANIADFSNYNMKNWNLFSVNFAMARTGLYQLSRKIKQN 69 (69)
Q Consensus 23 P~~kWglviAgl~D~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~~y~ 69 (69)
|+.=+.+...|++.+... -+|.|+-.=++--+.-+|-+.|+-+||
T Consensus 2 PvLViL~g~vGLsa~vgy--LDyVLlPaLa~Fi~lt~ya~~r~~~~~ 46 (46)
T 1waz_A 2 PVLVILLGVVGLSALTGY--LDYVLLPALAIFIGLTIYAIQRKRQAD 46 (46)
T ss_dssp HHHHHHHHHHHHHHCCSC--CCCCSCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ceeehhHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 333445556666665542 234444333444455567777877775
No 10
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=5.69 E-value=3.3e+02 Score=17.68 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCCcceeecccc
Q 040024 3 NKLLAFWNHPAGPKTIHFWAPT 24 (69)
Q Consensus 3 ~~~~~~~~~pagp~TvhFWaP~ 24 (69)
+.++.++..-.+|-.++||++-
T Consensus 15 ~ql~~~~~~~~~pv~v~~~~~~ 36 (243)
T 2hls_A 15 RELRETLAEMVNPVEVHVFLSK 36 (243)
T ss_dssp HHHHHHHTTCCSCEEEEEEECS
T ss_pred HHHHHHHHhCCCCEEEEEEeCC
Confidence 4577888877789999999875
Done!