Query 040024
Match_columns 69
No_of_seqs 113 out of 386
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 06:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gsta1 a.45.1.1 (A:85-217) Cl 24.9 20 0.0014 20.1 2.0 24 4-28 108-131 (133)
2 d1gsua1 a.45.1.1 (A:85-217) Cl 10.3 70 0.0051 17.5 1.9 25 4-29 108-132 (133)
3 d2a5yb1 a.4.5.80 (B:386-543) C 10.1 28 0.002 21.6 0.0 18 1-18 114-134 (158)
4 d2fhea1 a.45.1.1 (A:81-216) Cl 9.2 79 0.0058 17.7 1.9 25 4-29 107-131 (136)
5 d3gtub1 a.45.1.1 (B:85-224) Cl 7.9 25 0.0018 19.6 -0.9 7 22-28 129-135 (140)
6 d2c4ja1 a.45.1.1 (A:86-218) Cl 7.7 1E+02 0.0074 16.9 1.9 24 4-28 108-131 (133)
7 d1z5ye1 c.47.1.10 (E:49-184) T 6.1 78 0.0057 17.0 0.7 15 15-32 22-36 (136)
8 d1xvla1 c.92.2.2 (A:49-327) Mn 5.1 3.5E+02 0.026 16.3 3.7 50 17-66 104-154 (279)
9 d1jb0x_ f.23.20.1 (X:) Subunit 5.0 1.9E+02 0.014 13.0 1.8 11 46-56 12-22 (29)
10 d2pv4a1 a.286.1.1 (A:1-144) Un 4.5 2.2E+02 0.016 17.3 2.2 19 48-66 70-88 (144)
No 1
>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.86 E-value=20 Score=20.09 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.9
Q ss_pred HHHHHHcCCCCCcceeecccccchh
Q 040024 4 KLLAFWNHPAGPKTIHFWAPTFKWG 28 (69)
Q Consensus 4 ~~~~~~~~pagp~TvhFWaP~~kWg 28 (69)
++++.+.++-=++.- |.+|.+|||
T Consensus 108 ~ik~yl~s~~~~~~p-~~~~~a~~~ 131 (133)
T d2gsta1 108 KISAYMKSSRYLSTP-IFSKLAQWS 131 (133)
T ss_dssp HHHHHHTSTTCCCCC-CSCTTSSSS
T ss_pred HHHHHHhCCCcCCCC-CCCcccCcC
Confidence 466777666444432 569999997
No 2
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.28 E-value=70 Score=17.52 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=14.4
Q ss_pred HHHHHHcCCCCCcceeecccccchhh
Q 040024 4 KLLAFWNHPAGPKTIHFWAPTFKWGI 29 (69)
Q Consensus 4 ~~~~~~~~pagp~TvhFWaP~~kWgl 29 (69)
.+++.++++-=.+-. +++|++|||.
T Consensus 108 ~Ik~yl~s~~~~~~P-~~~~~~~~~~ 132 (133)
T d1gsua1 108 KISAYMRSGRFMKAP-IFWYTALWNN 132 (133)
T ss_dssp HHHHHHTSSSCCCCC-CSCTTCSSSC
T ss_pred HHHHHHcCCCcCCCC-CCCcccccCC
Confidence 355666654432222 4579999983
No 3
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=10.12 E-value=28 Score=21.58 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=0.0
Q ss_pred ChHHHHHHHcCCCC---Ccce
Q 040024 1 ITNKLLAFWNHPAG---PKTI 18 (69)
Q Consensus 1 ~~~~~~~~~~~pag---p~Tv 18 (69)
||+-+++|..+.|| |||+
T Consensus 114 ~pshfqkfrr~sa~~m~pkt~ 134 (158)
T d2a5yb1 114 IPSHFQKFRRSSASEMYPKTT 134 (158)
T ss_dssp ---------------------
T ss_pred cchHHHHhhccchhhcCCccc
Confidence 67777888888777 6665
No 4
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=9.25 E-value=79 Score=17.66 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=16.4
Q ss_pred HHHHHHcCCCCCcceeecccccchhh
Q 040024 4 KLLAFWNHPAGPKTIHFWAPTFKWGI 29 (69)
Q Consensus 4 ~~~~~~~~pagp~TvhFWaP~~kWgl 29 (69)
++++.+.|+-=.+ ..+.+|.++||-
T Consensus 107 ~Ik~yl~S~~~~~-~P~~~~~a~~~~ 131 (136)
T d2fhea1 107 SIKAYMESNRFIK-WPLNGWHAQFGG 131 (136)
T ss_dssp HHHHHHTSSSCCC-SCSSCTTCSSSC
T ss_pred HHHHHHcCcccCC-CCCCCCcCccCC
Confidence 4667777654322 457799999973
No 5
>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.92 E-value=25 Score=19.65 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=5.0
Q ss_pred ccccchh
Q 040024 22 APTFKWG 28 (69)
Q Consensus 22 aP~~kWg 28 (69)
+|.++||
T Consensus 129 ~~~~~~~ 135 (140)
T d3gtub1 129 NKMAQWG 135 (140)
T ss_dssp CTTSSSS
T ss_pred CCccccC
Confidence 6777776
No 6
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.71 E-value=1e+02 Score=16.87 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=15.0
Q ss_pred HHHHHHcCCCCCcceeecccccchh
Q 040024 4 KLLAFWNHPAGPKTIHFWAPTFKWG 28 (69)
Q Consensus 4 ~~~~~~~~pagp~TvhFWaP~~kWg 28 (69)
++++.++++-=.+ .-+.+|+++||
T Consensus 108 ~ik~yl~s~~~~~-~p~~~~~a~~g 131 (133)
T d2c4ja1 108 KISAYMKSSRFLP-RPVFSKMAVWG 131 (133)
T ss_dssp HHHHHHHSTTCCC-CCSSCTTCSSS
T ss_pred HHHHHHhCcccCC-CCCCCcccccC
Confidence 4556666643322 34788999998
No 7
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=6.07 E-value=78 Score=17.04 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=10.5
Q ss_pred Ccceeecccccchhhhhh
Q 040024 15 PKTIHFWAPTFKWGISIA 32 (69)
Q Consensus 15 p~TvhFWaP~~kWglviA 32 (69)
|-=++|||. |+-++-
T Consensus 22 ~vvl~Fwat---WC~pC~ 36 (136)
T d1z5ye1 22 PVLLNVWAT---WCPTSR 36 (136)
T ss_dssp CEEEEEECT---TCHHHH
T ss_pred EEEEEEEcC---cCCCcC
Confidence 445799985 777764
No 8
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=5.15 E-value=3.5e+02 Score=16.28 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=40.2
Q ss_pred ceeecccccchhhhhhhhhh-hcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 040024 17 TIHFWAPTFKWGISIANIAD-FSNYNMKNWNLFSVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 17 TvhFWaP~~kWglviAgl~D-~~r~pP~N~~L~~~n~~~~~~~~~ql~R~~ 66 (69)
--|+|==..++...+..|+| +.+.-|.|-..+.-|.--...++-++-+.+
T Consensus 104 dpH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~~ 154 (279)
T d1xvla1 104 NPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQL 154 (279)
T ss_dssp CCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccChHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHhhhhhhhHHHH
Confidence 45899888899999999999 555668999888888888887777776543
No 9
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.98 E-value=1.9e+02 Score=13.00 Aligned_cols=11 Identities=36% Similarity=0.612 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 040024 46 NLFSVNFAMAR 56 (69)
Q Consensus 46 ~L~~~n~~~~~ 56 (69)
+|.+.||.+++
T Consensus 12 lllainflvaa 22 (29)
T d1jb0x_ 12 LLLAINFLVAA 22 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56777776654
No 10
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=4.48 E-value=2.2e+02 Score=17.28 Aligned_cols=19 Identities=16% Similarity=-0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 040024 48 FSVNFAMARTGLYQLSRKI 66 (69)
Q Consensus 48 ~~~n~~~~~~~~~ql~R~~ 66 (69)
.-.|.+..+.|.+|++|-.
T Consensus 70 eqFH~~~~anq~~~~~~v~ 88 (144)
T d2pv4a1 70 CVFHGFYLANAWIQLSIVA 88 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999853
Done!