BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040025
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 13/263 (4%)
Query: 100 LEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSE-ILELSNLVSLDLSGNA 158
L L+L+GN F Y +PP + S L L LS + F G++P + +L++ L LDLS N
Sbjct: 293 LTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 159 YPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPI-PHXXXX-XXXXXXXXXXXXXV 216
+ G + E SLTNL+ L L+ + + F+ PI P+
Sbjct: 352 FSGELPE----SLTNLSASLLTLDLSS----NNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 217 RGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNL 276
G+IP +L N +L+ L LS N LSG IP+S+G+L L++L L N+L ++P + +
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 277 SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNK 336
+L+ L L N +GE+P+ + N ++L ++L N +G++P +IG L +L IL LS N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 337 FSGELPVFIGNLPSLEELDLSEN 359
FSG +P +G+ SL LDL+ N
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTN 545
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 151/355 (42%), Gaps = 73/355 (20%)
Query: 74 VFKLDLSNSCLQGSINSSSGLFNLIH-----LEWLNLAGNDFRYSEIPPGIANLSRLSYL 128
+ LDLS++ G I L NL L+ L L N F +IPP ++N S L L
Sbjct: 367 LLTLDLSSNNFSGPI-----LPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSL 420
Query: 129 NLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILE--LRKSSLTNLAEKLTNLE---- 182
+LS ++ G IPS + LS L L L N G I + + +L L +L
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 183 -----TLNLGLVSIFNT----PIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLIHL 233
NL +S+ N IP G IP+ LG+ LI L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 234 DLSQNQLLSGEIPAS--------------------IGNLGSLKELDLSGNIL-------- 265
DL+ N L +G IPA+ I N G KE +GN+L
Sbjct: 541 DLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 599
Query: 266 -----SSKLPASI-------------GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S++ P +I N S+ LD+S N+ SG +P IG++ L L
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ SG +P +G+LR L ILDLS NK G +P + L L E+DLS N LS
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 92 SGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151
SGL N +L W++L+ N EIP I L L+ L LS++ F G IP+E+ + +L+
Sbjct: 481 SGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXXXXXXXX 211
LDL+ N + G I +++ + K+ V I N +
Sbjct: 540 LDLNTNLFNGTI----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC----------- 584
Query: 212 XXXXVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASI-------------GNLGSLKEL 258
GNLL+ + Q LS P +I N GS+ L
Sbjct: 585 ----------HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 259 DLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318
D+S N+LS +P IG++ L L+L N SG +P +G+L L L L N G +P
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 319 AFIGNLRSLEILDLSLNKFSGELP 342
+ L L +DLS N SG +P
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIP 718
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 228 LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMN 287
+ L LD+S N +G IP +G+ +L+ LD+SGN LS +I + LK L++S N
Sbjct: 197 VNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 288 IFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFI-GNLRSLEILDLSLNKFSGELPVFIG 346
F G +P + L SL+ L+L EN F+G++P F+ G +L LDLS N F G +P F G
Sbjct: 255 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 69 ENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYL 128
+NNG + LD+S + L G I G ++ +L LNL ND S IP + +L L+ L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISGS-IPDEVGDLRGLNIL 682
Query: 129 NLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRK 168
+LS + G+IP + L+ L +DLS N G I E+ +
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 13/263 (4%)
Query: 100 LEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSE-ILELSNLVSLDLSGNA 158
L L+L+GN F Y +PP + S L L LS + F G++P + +L++ L LDLS N
Sbjct: 296 LTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 159 YPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPI-PHXXXX-XXXXXXXXXXXXXV 216
+ G + E SLTNL+ L L+ + + F+ PI P+
Sbjct: 355 FSGELPE----SLTNLSASLLTLDLSS----NNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 217 RGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNL 276
G+IP +L N +L+ L LS N LSG IP+S+G+L L++L L N+L ++P + +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 277 SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNK 336
+L+ L L N +GE+P+ + N ++L ++L N +G++P +IG L +L IL LS N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 337 FSGELPVFIGNLPSLEELDLSEN 359
FSG +P +G+ SL LDL+ N
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTN 548
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 151/355 (42%), Gaps = 73/355 (20%)
Query: 74 VFKLDLSNSCLQGSINSSSGLFNLIH-----LEWLNLAGNDFRYSEIPPGIANLSRLSYL 128
+ LDLS++ G I L NL L+ L L N F +IPP ++N S L L
Sbjct: 370 LLTLDLSSNNFSGPI-----LPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSL 423
Query: 129 NLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILE--LRKSSLTNLAEKLTNLE---- 182
+LS ++ G IPS + LS L L L N G I + + +L L +L
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Query: 183 -----TLNLGLVSIFNT----PIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLIHL 233
NL +S+ N IP G IP+ LG+ LI L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 234 DLSQNQLLSGEIPAS--------------------IGNLGSLKELDLSGNIL-------- 265
DL+ N L +G IPA+ I N G KE +GN+L
Sbjct: 544 DLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602
Query: 266 -----SSKLPASI-------------GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S++ P +I N S+ LD+S N+ SG +P IG++ L L
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ SG +P +G+LR L ILDLS NK G +P + L L E+DLS N LS
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 115/264 (43%), Gaps = 39/264 (14%)
Query: 92 SGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151
SGL N +L W++L+ N EIP I L L+ L LS++ F G IP+E+ + +L+
Sbjct: 484 SGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXXXXXXXX 211
LDL+ N + G I +++ + K+ V I N +
Sbjct: 543 LDLNTNLFNGTI----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC----------- 587
Query: 212 XXXXVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASI-------------GNLGSLKEL 258
GNLL+ + Q LS P +I N GS+ L
Sbjct: 588 ----------HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 259 DLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318
D+S N+LS +P IG++ L L+L N SG +P +G+L L L L N G +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 319 AFIGNLRSLEILDLSLNKFSGELP 342
+ L L +DLS N SG +P
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 228 LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMN 287
+ L LD+S N +G IP +G+ +L+ LD+SGN LS +I + LK L++S N
Sbjct: 200 VNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 288 IFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFI-GNLRSLEILDLSLNKFSGELPVFIG 346
F G +P + L SL+ L+L EN F+G++P F+ G +L LDLS N F G +P F G
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 69 ENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYL 128
+NNG + LD+S + L G I G ++ +L LNL ND S IP + +L L+ L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISGS-IPDEVGDLRGLNIL 685
Query: 129 NLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRK 168
+LS + G+IP + L+ L +DLS N G I E+ +
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 152/340 (44%), Gaps = 61/340 (17%)
Query: 8 ICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCC--SWDGV 65
+C+ ++ +LLQ K+ L T+ +SW P DCC +W GV
Sbjct: 2 LCNPQDKQALLQIKKDLGNPTTL-----------------SSWLPT---TDCCNRTWLGV 41
Query: 66 ECNENNG--HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLS 123
C+ + V LDLS L S L NL +L +L + G + IPP IA L+
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 124 RLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLET 183
+L YL ++ + G IP + ++ LV+LD S NA G L SSL NL
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNL--------- 151
Query: 184 LNLGLVSIFNTPIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLI-HLDLSQNQLLS 242
+G+ N + G IP S G+ KL + +S+N+ L+
Sbjct: 152 --VGITFDGN---------------------RISGAIPDSYGSFSKLFTSMTISRNR-LT 187
Query: 243 GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSS 302
G+IP + NL +L +DLS N+L G+ + +++ L+ N + ++ +G +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 303 LKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
L L L N G LP + L+ L L++S N GE+P
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Query: 174 LAEKLTNLETLNLGLVSIFNT---PIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKL 230
+ L NL LN + N PIP V G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 231 IHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL-KELDLSMNIF 289
+ LD S N L SG +P SI +L +L + GN +S +P S G+ S L + +S N
Sbjct: 128 VTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 290 SGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLP 349
+G++P NL +L + L N GD G+ ++ + + L+ N + +L +G
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 350 SLEELDLSENQL 361
+L LDL N++
Sbjct: 245 NLNGLDLRNNRI 256
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 255 LKELDLSGNILSSK--LPASIGNLSSLKELDLS-MNIFSGEVPAVIGNLSSLKALTLVEN 311
+ LDLSG L +P+S+ NL L L + +N G +P I L+ L L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 312 NFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
N SG +P F+ +++L LD S N SG LP I +LP+L + N++S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 245 IPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLK 304
+PASI NL +LK L + + LS+ PA I +L L+ELDL P + G + LK
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 305 ALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPS 350
L L + + LP I L LE LDL LP I LP+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 244 EIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVI------ 297
E+P + L+ L L+ N L + LPASI +L+ L+EL + E+P +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 298 GNLSSLKALTLVENNFSG--DLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELD 355
G L L + ++G LPA I NL++L+ L + + S P I +LP LEELD
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELD 235
Query: 356 L 356
L
Sbjct: 236 L 236
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
VE N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 108 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 219 RIPSSLGNLLKLIHLDLSQNQLLS-GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277
+IP +L K +LDLS N L G S + L+ LDLS + + + +LS
Sbjct: 23 KIPDNLPFSTK--NLDLSWNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L L L+ N LSSL+ L VE N + IG+L++L+ L+++ N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 338 -SGELPVFIGNLPSLEELDLSENQLS 362
S +LP + NL +LE LDLS N++
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 219 RIPSSLGNLLKLIHLDLSQNQLLS-GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277
+IP +L K +LDLS N L G S + L+ LDLS + + + +LS
Sbjct: 22 KIPDNLPFSTK--NLDLSWNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L L L+ N LSSL+ L VE N + IG+L++L+ L+++ N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 338 -SGELPVFIGNLPSLEELDLSENQLS 362
S +LP + NL +LE LDLS N++
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
VE N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
VE N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 77 LDLSNSCLQGSINSSSGLFN-LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135
LD+S++ + + N G+FN L LE L +AGN F+ + +P L L++L+LS
Sbjct: 450 LDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 136 IGQIPSEILELSNLVSLDLSGNAY 159
P+ LS+L L++S N +
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 17/142 (11%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L+ S N ++ P + NL++L+ LD
Sbjct: 125 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLD 179
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 231
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 232 -IGTLASLTNLTDLDLANNQIS 252
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 234 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L NK S
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
VE N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIG-NLSSLKELDLSMNI 288
L +LDLS N +++ + ++ L L+ LD + L S+ +L +L LD+S
Sbjct: 375 LKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGD-LPAFIGNLRSLEILDLSLNKFSGELPVFIGN 347
+ LSSL+ L + N+F + LP LR+L LDLS + P +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 348 LPSLEELDLSENQL 361
L SL+ L+++ NQL
Sbjct: 493 LSSLQVLNMASNQL 506
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 77 LDLSNSCLQGSINSSSGLFN-LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135
LD+S++ + + N G+FN L LE L +AGN F+ + +P L L++L+LS
Sbjct: 426 LDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 136 IGQIPSEILELSNLVSLDLSGN---AYPGGILELRKSSLTNL 174
P+ LS+L L+++ N + P GI + R +SL +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD-RLTSLQKI 523
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSK-LPASIGNLSSLKELDLS 285
L LI+LD+S L SL+ L ++GN LP L +L LDLS
Sbjct: 420 LRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
P +LSSL+ L + N L SL+ + L N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
VE N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 77 LDLSNSCLQGSINSSSGLFN-LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135
LD+S++ + + N G+FN L LE L +AGN F+ + +P L L++L+LS
Sbjct: 426 LDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 136 IGQIPSEILELSNLVSLDLSGNAY 159
P+ LS+L L++S N +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L S N ++ P + NL++L+ LD
Sbjct: 125 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 231
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 232 -IGTLASLTNLTDLDLANNQIS 252
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 234 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L NK S
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 342
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
S + L+ LDLS + + + +LS L L L+ N LSSL+ L
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQLS 362
+E N + IG+L++L+ L+++ N S +LP + NL +LE LDLS N++
Sbjct: 109 ALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS 267
+G+L L L+++ N + S ++P NL +L+ LDLS N + S
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 146 LSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXX 205
LS+L +L L+GN P L L S + +KL LET L S+ N PI H
Sbjct: 77 LSHLSTLILTGN--PIQSLALGAFSGLSSLQKLVALET---NLASLENFPIGHLKTLKEL 131
Query: 206 XXXXXXXXXXVRGRIPSSLGNLLKLIHLDLSQNQLLS---------------------GE 244
++P NL L HLDLS N++ S
Sbjct: 132 NVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 188
Query: 245 IPASIGNLGS-----LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAV 296
P + G+ LKEL L N L S L+SL+++ L N + P +
Sbjct: 189 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 245
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L S N ++ P + NL++L+ LD
Sbjct: 125 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 180 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 231
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 232 -IGTLASLTNLTDLDLANNQIS 252
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 234 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L S NK S
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 342
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
+ L NL K+ L+LS N L + ++I L S+K LDL+ ++ P + LS+L+
Sbjct: 85 TPLKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 139
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
L L +N + P + L++L+ L++ N + P + NL L L NK S
Sbjct: 140 LYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDIS 195
Query: 342 PVFIGNLPSLEELDLSENQLS 362
P + +LP+L E+ L +NQ+S
Sbjct: 196 P--LASLPNLIEVHLKDNQIS 214
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL K+ L+LS N L + ++I L S+K LDL+ ++ P + LS+L+ L
Sbjct: 81 LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
L +N + P + L++L+ L++ S P + NL L L NK S P
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP- 190
Query: 344 FIGNLPSLEELDLSENQLS 362
+ +LP+L E+ L NQ+S
Sbjct: 191 -LASLPNLIEVHLKNNQIS 208
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 244 EIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSL 303
E+PA I NL +L+ LDLS N L+S LPA +G+ LK N+ + +P GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 304 KAL 306
+ L
Sbjct: 319 QFL 321
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 220 IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL 279
+P+ + NL L LDLS N+L S +PA +G+ LK N++++ LP GNL +L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 280 KELDLSMN 287
+ L + N
Sbjct: 319 QFLGVEGN 326
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 275 NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSL 334
+LS+L+ ++S NIF + L L L N+ + +LPA I NL +L +LDLS
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279
Query: 335 NKFSGELPVFIGNLPSLEELDLSENQLS 362
N+ + LP +G+ L+ +N ++
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
Query: 96 NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLS 155
+L +L+ N++ N F+Y L+RL YLN + + ++P+EI LSNL LDLS
Sbjct: 230 DLSNLQIFNISANIFKYD-------FLTRL-YLNGNS---LTELPAEIKNLSNLRVLDLS 278
Query: 156 GN 157
N
Sbjct: 279 HN 280
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 18/142 (12%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L+ GN ++ P + NL++L+ LD
Sbjct: 125 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLNF-GNQVTDLKP--LANLTTLERLD 178
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 179 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 230
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 231 -IGTLASLTNLTDLDLANNQIS 251
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 233 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L NK S
Sbjct: 288 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 341
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 342 SSLANLTNINWLSAGHNQIS 361
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 18/142 (12%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L+ GN ++ P + NL++L+ LD
Sbjct: 125 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLNF-GNQVTDLKP--LANLTTLERLD 178
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 179 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 230
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 231 -IGTLASLTNLTDLDLANNQIS 251
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 233 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L S NK S
Sbjct: 288 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-- 341
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 342 SSLANLTNINWLSAGHNQIS 361
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284
G L L LDLS NQL S +P L +L LD+S N L+S ++ L L+EL L
Sbjct: 75 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331
N P ++ L+ L+L NN + +LPA G L LE LD
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 176
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L L+L + +L ++ ++ LG+L DLS N L S LP L +L LD+S N
Sbjct: 57 RLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTVLDVSFNR 112
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV-FIGN 347
+ + L L+ L L N P + LE L L+ N + ELP +
Sbjct: 113 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 171
Query: 348 LPSLEELDLSENQL 361
L +L+ L L EN L
Sbjct: 172 LENLDTLLLQENSL 185
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 103 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIG 322
+ E+PA ++ L +L L L EN+ F G
Sbjct: 162 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284
G L L LDLS NQL S +P L +L LD+S N L+S ++ L L+EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331
N P ++ L+ L+L NN + +LPA G L LE LD
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L L+L + +L ++ ++ LG+L DLS N L S LP L +L LD+S N
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV-FIGN 347
+ + L L+ L L N P + LE L L+ N + ELP +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
Query: 348 LPSLEELDLSENQL 361
L +L+ L L EN L
Sbjct: 171 LENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIG 322
+ E+PA ++ L +L L L EN+ F G
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284
G L L LDLS NQL S +P L +L LD+S N L+S ++ L L+EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331
N P ++ L+ L+L NN + +LPA G L LE LD
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++L +L L+L + +L ++ ++ LG+L DLS N L S LP L +L
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
LD+S N + + L L+ L L N P + LE L L+ N + EL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163
Query: 342 PV-FIGNLPSLEELDLSENQL 361
P + L +L+ L L EN L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIG 322
+ E+PA ++ L +L L L EN+ F G
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284
G L L LDLS NQL S +P L +L LD+S N L+S ++ L L+EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331
N P ++ L+ L+L NN + +LPA G L LE LD
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L L+L + +L ++ ++ LG+L DLS N L S LP L +L LD+S N
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV-FIGN 347
+ + L L+ L L N P + LE L L+ N + ELP +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
Query: 348 LPSLEELDLSENQL 361
L +L+ L L EN L
Sbjct: 171 LENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIG 322
+ E+PA ++ L +L L L EN+ F G
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284
G L L LDLS NQL S +P L +L LD+S N L+S ++ L L+EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331
N P ++ L+ L+L NN + +LPA G L LE LD
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L L+L + +L ++ ++ LG+L DLS N L S LP L +L LD+S N
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV-FIGN 347
+ + L L+ L L N P + LE L L+ N + ELP +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
Query: 348 LPSLEELDLSENQL 361
L +L+ L L EN L
Sbjct: 171 LENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIG 322
+ E+PA ++ L +L L L EN+ F G
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 18/142 (12%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L GN ++ P + NL++L+ LD
Sbjct: 130 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 235
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 236 -IGTLASLTNLTDLDLANNQIS 256
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 238 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L NK S
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 347 SSLANLTNINWLSAGHNQIS 366
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 18/142 (12%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L NL L L+LS N + +I A G L SL++L GN ++ P + NL++L+ LD
Sbjct: 129 LKNLTNLNRLELSSNTI--SDISALSG-LTSLQQLSF-GNQVTDLKP--LANLTTLERLD 182
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343
+S N S +V+ L++L++L N S P +G L +L+ L L+ N+
Sbjct: 183 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---- 234
Query: 344 FIGNLPSLE---ELDLSENQLS 362
IG L SL +LDL+ NQ+S
Sbjct: 235 -IGTLASLTNLTDLDLANNQIS 255
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282
+L +L L LDL+ NQ+ S P S L L EL L N +S+ P + L++L L
Sbjct: 237 TLASLTNLTDLDLANNQI-SNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNL 291
Query: 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342
+L+ N P I NL +L LTL NN S P + +L L+ L + NK S
Sbjct: 292 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-- 345
Query: 343 VFIGNLPSLEELDLSENQLS 362
+ NL ++ L NQ+S
Sbjct: 346 SSLANLTNINWLSAGHNQIS 365
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%)
Query: 247 ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306
+++ L +L L L+GN L S L++LKEL L N V L++L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 307 TLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
L N L +L LDLS N+ L L++L L +NQL
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285
L L +L+L+ NQL S +P + L +L ELDLS N L S L+ LK+L L
Sbjct: 132 LTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339
N V L+SL+ + L +N + P + L +NK SG
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSG 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
+ +LG+L L L GN +SS + L SL L L N + P +L L L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L NN S + LR+L+ L L+ N +
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 54/141 (38%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++ L L LDLS N L PA+ LG L L L L P L++L+
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
L L N +L +L L L N S L SL+ L L N+ +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 342 PVFIGNLPSLEELDLSENQLS 362
P +L L L L N LS
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
+ +LG+L L L GN +SS + L SL L L N + P +L L L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L NN S + LR+L+ L L+ N +
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPW 236
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 54/141 (38%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++ L L LDLS N L PA+ LG L L L L P L++L+
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
L L N +L +L L L N S L SL+ L L N+ +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 342 PVFIGNLPSLEELDLSENQLS 362
P +L L L L N LS
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS 213
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 64 GVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGN------DFRYSEIPP 117
G C E ++ KLDLS+S ++ S + L NL HL++LNL+ N D + E P
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 118 ------------------GIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAY 159
NL L LNLS + L +L L+L GN++
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 160 PGGILELRKSSLTNLAEKLTNLETL 184
G + S TNL + + +LE L
Sbjct: 461 QDGSI-----SKTNLLQMVGSLEIL 480
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 48/268 (17%)
Query: 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPP-GIANLSRLSYLNL 130
G++ KLDL CL+ L +L+ L+L+ +D S+ + NL L YLNL
Sbjct: 333 GNMRKLDLGTRCLE----------KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 131 SDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVS 190
S + +G LE D + P LEL + T+L K + NL L+
Sbjct: 383 SYNEPLG------LE-------DQAFKECPQ--LELLDVAFTHLHVKAPHSPFQNLHLLR 427
Query: 191 IFNTPIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPAS-- 248
+ N + H L L L HL+L N G I +
Sbjct: 428 VLN--LSHCLLDTSNQHL---------------LAGLQDLRHLNLQGNSFQDGSISKTNL 470
Query: 249 IGNLGSLKELDLSG-NILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
+ +GSL+ L LS N+LS A G L ++ LDLS N +G+ + +L L L
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLN 528
Query: 308 LVENNFSGDLPAFIGNLRSLEILDLSLN 335
+ NN P + L I++LS N
Sbjct: 529 MASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
S+ ++ LDL+ L +P+ I + SLK+L L+ N + + SL++
Sbjct: 271 STFRCFTRVQELDLTAAHL--NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRD 328
Query: 282 LDLSMNIFSGEV-PAVIGNLSSLKALTLVENNFSGD--LPAFIGNLRSLEILDLSLNKFS 338
L + N+ ++ + L +L+ L L ++ + NLR L+ L+LS N+
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 339 GELPVFIGNLPSLEELDLSENQL 361
G P LE LD++ L
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHL 411
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285
L L +L+LS NQL S +P + L LKEL L+ N L S L+ LK+L L
Sbjct: 75 LTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339
N V L+SL+ + L +N + P + L +NK SG
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSG 179
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++L +L L+L + +L ++ ++ LG+L DLS N L S LP L +L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
LD+S N + + L L+ L L N P + LE L L+ N+ + EL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-EL 163
Query: 342 PV-FIGNLPSLEELDLSENQL 361
P + L +L+ L L EN L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIGN 323
+ E+PA ++ L +L L L EN+ F G+
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 274 GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL-EILDL 332
G L L LDLS N +P ++G +L ALT+++ +F+ +G LR L E+ +L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 333 SL--NKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ P + P LE+L L+ NQL+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%)
Query: 255 LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314
+K DLS + + + L + + + L++L L+ N + L+ L L L +N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 315 GDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
NL LE+LDLS N LP+L+EL L NQL
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285
L L+ L+LSQN L G I + + NL L+ LDLS N + + S L +LKEL L
Sbjct: 322 LTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318
N + L+SL+ + L N + P
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 276 LSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA--FIGNLRSLEILDLS 333
LSSL L L N F L++L+ LTL + N G + + F L SLE+L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 334 LNKFSGELPV-FIGNLPSLEELDLSENQLS 362
N P F N+ LDL+ N++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++L +L L+L + +L ++ ++ LG+L DLS N L S LP L +L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
LD+S N + + L L+ L L N P + LE L L+ N+ + EL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-EL 163
Query: 342 PV-FIGNLPSLEELDLSENQL 361
P + L +L+ L L EN L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIGN 323
+ E+PA ++ L +L L L EN+ F G+
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 274 GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL-EILDL 332
G L L LDLS N +P ++G +L ALT+++ +F+ +G LR L E+ +L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 333 SL--NKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ P + P LE+L L+ NQL+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++L +L L+L + +L ++ ++ LG+L DLS N L S LP L +L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
LD+S N + + L L+ L L N P + LE L L+ N+ + EL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-EL 163
Query: 342 PV-FIGNLPSLEELDLSENQL 361
P + L +L+ L L EN L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIGN 323
+ E+PA ++ L +L L L EN+ F G+
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 274 GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL-EILDL 332
G L L LDLS N +P ++G +L ALT+++ +F+ +G LR L E+ +L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 333 SL--NKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ P + P LE+L L+ NQL+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L L+L + +L ++ ++ LG+L DLS N L S LP L +L LD+S N
Sbjct: 56 RLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTVLDVSFNR 111
Query: 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV-FIGN 347
+ + L L+ L L N P + LE L L+ N+ + ELP +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
Query: 348 LPSLEELDLSENQL 361
L +L+ L L EN L
Sbjct: 171 LENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIGN 323
+ E+PA ++ L +L L L EN+ F G+
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 274 GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL-EILDL 332
G L L LDLS N +P ++G +L ALT+++ +F+ +G LR L E+ +L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 333 SL--NKFSGELPVFIGNLPSLEELDLSENQLS 362
L N+ P + P LE+L L+ NQL+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGE 292
LDL +N++ + + L+EL+L+ NI+S+ P + NL +L+ L L N
Sbjct: 37 LDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95
Query: 293 VPAVIGNLSSLKALTLVENNFSGDLPAF---IGNLRSLEILD-----LSLNKFSGELPVF 344
V LS+L L + EN L + NL+SLE+ D +S FSG
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG----- 150
Query: 345 IGNLPSLEELDLSENQLS 362
L SLE+L L + L+
Sbjct: 151 ---LNSLEQLTLEKCNLT 165
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 66/253 (26%)
Query: 64 GVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGND-------------- 109
G C EN ++ +LDLS+ ++ S + L NL HL+ LNL+ N+
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 110 ----------FRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEIL--ELSNLVSLDLSGN 157
+ + NL L LNLS S I SE L L L L+L GN
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGN 459
Query: 158 AYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXXXXXXXXXXXXVR 217
+P G ++ TN + L LE L L +
Sbjct: 460 HFPKGNIQ-----KTNSLQTLGRLEILVLSFCDL-------------------------- 488
Query: 218 GRIPSSLGNLLKLI-HLDLSQNQLLSGEIPASIGNLGSLK--ELDLSGNILSSKLPASIG 274
I LK++ H+DLS N+L S I A L LK L+L+ N +S LP+ +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA----LSHLKGIYLNLASNHISIILPSLLP 544
Query: 275 NLSSLKELDLSMN 287
LS + ++L N
Sbjct: 545 ILSQQRTINLRQN 557
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 115/303 (37%), Gaps = 49/303 (16%)
Query: 78 DLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFR--------------YSEIPPGIANLS 123
D+S + +G S NL + N++ N F SE+P G+ LS
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS 301
Query: 124 RLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLET 183
L L LS + F +L L + GN LEL L NL NL
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR---LELGTGCLENLE----NLRE 354
Query: 184 LNLGLVSIFNTPIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLIHLDLSQNQLLSG 243
L+L I + + L NL L L+LS N+ LS
Sbjct: 355 LDLSHDDIETSDCCNL-----------------------QLRNLSHLQSLNLSYNEPLSL 391
Query: 244 EIPASIGNLGSLKELDLSGNILSSKLPAS-IGNLSSLKELDLSMNIFSGEVPAVIGNLSS 302
+ A L+ LDL+ L K S NL LK L+LS ++ + L +
Sbjct: 392 KTEA-FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450
Query: 303 LKALTLVENNF-SGDLPAF--IGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSEN 359
L+ L L N+F G++ + L LEIL LS S +L + +DLS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 360 QLS 362
+L+
Sbjct: 511 RLT 513
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 230 LIHLDLSQNQLLSGEIPA--SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMN 287
L HL+L N G I S+ LG L+ L LS LSS + +L + +DLS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 288 IFSGEVPAVIGNLSSLKA--LTLVENNFSGDLPAFIGNLRSLEILDLSLN 335
+ + I LS LK L L N+ S LP+ + L ++L N
Sbjct: 511 RLTS---SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 77 LDLSNSCLQGSINSSSGLFN-LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135
LD+S++ + + N G+FN L LE L +AGN F+ + +P L L++L+LS
Sbjct: 131 LDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 136 IGQIPSEILELSNLVSLDLSGNAY 159
P+ LS+L L++S N +
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 220 IPSSLGNLLKLIHLDLSQNQL--LSGE-IPASIGNLGSLKELDLSGNILSSKLPASIGNL 276
+P SL + L LDLS N L L E P + NL SL N +SS+ + NL
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 277 SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG-DLPAF--IGNLRSLEILDLS 333
+ LDLS N + +L +L+ L L N+ D AF + L+ L +
Sbjct: 91 ---RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 334 LNKFSGELPVFIGNLPSLEELDLSENQLS 362
+++F EL LP L LDLS N+L
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 251 NLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSG-EVPAVIGNLSSLKALTL- 308
+LGSL+ LDLS N LSS + G LSSLK L+L N + V ++ NL++L+ L +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 309 -VEN-------NFSGDLPAFIGNLRSLEILDLSLNKFSGE 340
VE +F+G + +L LEI LSL + +
Sbjct: 158 NVETFSEIRRIDFAG-----LTSLNELEIKALSLRNYQSQ 192
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP-AFIGNLRSLEILDLSLNK 336
+++ L + ++ V L +K +T VEN+ +P +F +L+SLE LDLS N
Sbjct: 313 TIRRLHIPQFYLFYDLSTVYSLLEKVKRIT-VENSKVFLVPCSFSQHLKSLEFLDLSENL 371
Query: 337 FSGEL---PVFIGNLPSLEELDLSENQL 361
E G PSL+ L LS+N L
Sbjct: 372 MVEEYLKNSACKGAWPSLQTLVLSQNHL 399
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 118 GIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177
+L L +L+LSD+ S LS+L L+L GN Y + +T+L
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-------QTLGVTSLFPN 147
Query: 178 LTNLETLNLGLVSIFN 193
LTNL+TL +G V F+
Sbjct: 148 LTNLQTLRIGNVETFS 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 124/328 (37%), Gaps = 94/328 (28%)
Query: 64 GVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGND------FRYSEIPP 117
GV C E G++ LDLS++ ++ S S L NL HL+ LNL+ N+ + E P
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQ 398
Query: 118 ------------------GIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAY 159
NL L LNL+ F + L L L+L GN +
Sbjct: 399 LELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
Query: 160 PGGILELRKSSLTNLAEKLTNLETLNL---GLVSIFNTPIPHXXXXXXXXXXXXXXXXXV 216
G + + TNL + + +LE L L GL+SI
Sbjct: 459 QDGTI-----TKTNLLQTVGSLEVLILSSCGLLSI------------------------- 488
Query: 217 RGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLK--ELDLSGNILSSKLPASIG 274
+ SLG K+ H+DLS N L SI +L LK L+L+ N
Sbjct: 489 DQQAFHSLG---KMSHVDLSHNSLTCD----SIDSLSHLKGIYLNLAAN----------- 530
Query: 275 NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSL 334
S+NI S P ++ LS + L N L N+ L +L
Sbjct: 531 ----------SINIIS---PRLLPILSQQSTINLSHN----PLDCTCSNIHFLTWYKENL 573
Query: 335 NKFSGELPVFIGNLPSLEELDLSENQLS 362
+K G N PSL + LS+ +LS
Sbjct: 574 HKLEGSEETTCANPPSLRGVKLSDVKLS 601
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288
+L LDL+ L +P+ + L LK+L LS N S N SL L + N+
Sbjct: 276 QLQELDLTATHL--KGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 289 FSGEV-PAVIGNLSSLKALTLVENNF-SGDLPAF-IGNLRSLEILDLSLNKFSGELPVFI 345
+ + L +L+ L L N+ + D + + NL L+ L+LS N+ G
Sbjct: 334 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 346 GNLPSLEELDLSENQL 361
P LE LDL+ +L
Sbjct: 394 KECPQLELLDLAFTRL 409
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 220 IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIG---NL 276
+PS + L L L LS N S N SL L + GN+ KL +G L
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHF-DQLCQISAANFPSLTHLYIRGNV--KKLHLGVGCLEKL 346
Query: 277 SSLKELDLSMN-IFSGEVPAV-IGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSL 334
+L+ LDLS N I + + ++ + NLS L+ L L N G LE+LDL+
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 335 NKFSGELPVF-IGNLPSLEELDLS 357
+ P NL L+ L+L+
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLNLT 430
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
S++ L+L + FS + L+ L L + G LP+ + L L+ L LS+N F
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 338 SGELPVFIGNLPSLEELDLSEN 359
+ N PSL L + N
Sbjct: 311 DQLCQISAANFPSLTHLYIRGN 332
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 251 NLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSG-EVPAVIGNLSSLKALTL- 308
+LGSL+ LDLS N LSS + G LSSLK L+L N + V ++ NL++L+ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 309 -VEN-------NFSGDLPAFIGNLRSLEILDLSLNKFSGE 340
VE +F+G + +L LEI LSL + +
Sbjct: 132 NVETFSEIRRIDFAG-----LTSLNELEIKALSLRNYQSQ 166
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 118 GIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177
+L L +L+LSD+ S LS+L L+L GN Y + +T+L
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-------QTLGVTSLFPN 121
Query: 178 LTNLETLNLGLVSIFN 193
LTNL+TL +G V F+
Sbjct: 122 LTNLQTLRIGNVETFS 137
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP-AFIGNLRSLEILDLSLNK 336
+++ L + ++ V L +K +T VEN+ +P +F +L+SLE LDLS N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRIT-VENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 337 FSGEL---PVFIGNLPSLEELDLSENQL 361
E G PSL+ L LS+N L
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHL 373
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++L +L L+L + +L ++ ++ LG+L DLS N L S LP L +L
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341
LD+S N + + L L+ L L N P + LE L L+ N + EL
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-EL 163
Query: 342 PV-FIGNLPSLEELDLSENQL 361
P + L +L+ L L EN L
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIF 289
L LD+S N+L S + A G LG L+EL L GN L + P + L++L L+ N
Sbjct: 102 LTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Query: 290 SGEVPA-VIGNLSSLKALTLVENNFSGDLPAFIGN 323
+ E+PA ++ L +L L L EN+ F G+
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%)
Query: 247 ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306
+++ L +L L L+GN L S L++LKEL L N V L++L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 307 TLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362
L N L +L LDL N+ L L++L L++NQL
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285
L L +L L NQL S +P + L +L LDL N L S L+ LK+L L+
Sbjct: 132 LTNLTYLYLYHNQLQS--LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN 189
Query: 286 MNIFSGEVPAVIGNLSSLKALTLVEN 311
N V L+SL + L+ N
Sbjct: 190 DNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 257 ELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS--GEVPAVIGNLSSLKALTLVENNFS 314
LD S N+L+ + + G+L+ L+ L L MN ++ + + SL+ L + +N+ S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 315 GDLP----AFIGNLRSL-------------------EILDLSLNKFSGELPVFIGNLPSL 351
D ++ +L SL ++LDL NK +P + L +L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446
Query: 352 EELDLSENQL 361
+EL+++ NQL
Sbjct: 447 QELNVASNQL 456
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 218 GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277
+I + L LD+SQN + E SL L++S NIL+ + +
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421
Query: 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
+K LDL N +P + L +L+ L + N L SL+ + L N +
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 338 SGELP 342
P
Sbjct: 481 DCSCP 485
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE-- 281
+G L+ L L+++ N + S ++PA NL +L +DLS N + + ++ +L L+E
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 180
Query: 282 -----LDLSMNIFSGEVPAVIGNLSSLKALTLVEN-NFSGDLPAFIGNLRSLEILDLSLN 335
LD+S+N + L LTL N N S + + NL L + L L
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 336 KFSGE 340
+F E
Sbjct: 240 EFKDE 244
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 243 GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM---------------- 286
++P I S K +DLS N L S N S L+ LDLS
Sbjct: 24 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 287 --------NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAF-IGNLRSLEILDLSLNKF 337
N P L+SL+ L VE + L +F IG L +L+ L+++ N
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI 140
Query: 338 -SGELPVFIGNLPSLEELDLSENQL 361
S +LP + NL +L +DLS N +
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE-- 281
+G L+ L L+++ N + S ++PA NL +L +DLS N + + ++ +L L+E
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT---ITVNDLQFLRENP 175
Query: 282 -----LDLSMNIFSGEVPAVIGNLSSLKALTLVEN-NFSGDLPAFIGNLRSLEILDLSLN 335
LD+S+N + L LTL N N S + + NL L + L L
Sbjct: 176 QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 234
Query: 336 KFSGE 340
+F E
Sbjct: 235 EFKDE 239
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 243 GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM---------------- 286
++P I S K +DLS N L S N S L+ LDLS
Sbjct: 19 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 287 --------NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAF-IGNLRSLEILDLSLNKF 337
N P L+SL+ L VE + L +F IG L +L+ L+++ N
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI 135
Query: 338 -SGELPVFIGNLPSLEELDLSENQL 361
S +LP + NL +L +DLS N +
Sbjct: 136 HSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 248 SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307
+ +LG+L L L GN + S + L SL L L N + P +L L L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 308 LVENNFSGDLPA-FIGNLRSLEILDLSLNKF 337
L NN S LPA + LRSL+ L L+ N +
Sbjct: 207 LFANNLSM-LPAEVLVPLRSLQYLRLNDNPW 236
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 226 NLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGN 263
NL L LDLS+NQ+ S + S G L SLK +D S N
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
S+ L K+ ++DL +N + + + L L+ LDL N L++ I + S+ +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPD 385
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG-DLPAFIGNLRSLEILDLSLNKFSG- 339
+ LS N +P + NL++ + L EN D+ F+ + L+IL L+ N+FS
Sbjct: 386 IFLSGNKLV-TLPKI--NLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 340 ---ELPVFIGNLPSLEELDLSENQLS 362
+ P PSLE+L L EN L
Sbjct: 442 SGDQTP---SENPSLEQLFLGENMLQ 464
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 226 NLLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASI-GNLSSLKELD 283
+L +L L L+ NQL S +P + +L L +L L GN L S LP+ + L+ LKEL
Sbjct: 81 DLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELR 137
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L+ N L++L+ L+L N L L+ + L N+F
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 226 NLLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASI-GNLSSLKELD 283
+L +L L L+ NQL S +P + +L L +L L GN L S LP+ + L+ LKEL
Sbjct: 81 DLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELR 137
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L+ N L++L+ L+L N L L+ + L N+F
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS--KLPASIGNLSSLKELDLSMN-IF 289
L+ +QN + + + L L+ L L N L + K+ N+SSL+ LD+S+N +
Sbjct: 358 LNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 290 SGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLP 349
S S+ L L N +G + F +++LDL N+ +P + +L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQ 473
Query: 350 SLEELDLSENQL 361
+L+EL+++ NQL
Sbjct: 474 ALQELNVASNQL 485
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 277 SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG--DLPAFIGNLRSLEILDLSL 334
SS L+ + N+F+ V L L+ L L N + N+ SLE LD+SL
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 335 N 335
N
Sbjct: 413 N 413
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 100 LEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF--IGQIPSEILELSNLVSLDLSGN 157
L L+L+ NDF + NL++L++L LS + F + +P L LS ++ LDL
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL-LDLVSY 181
Query: 158 AYPGGILE 165
GG E
Sbjct: 182 HIKGGETE 189
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 220 IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL 279
IPS L +K LDLS N++ + + +L+ L L+ N +++ S +L SL
Sbjct: 46 IPSGLTEAVK--SLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 280 KELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS--GDLPAFIGNLRSLEILDL-SLNK 336
+ LDLS N S + LSSL L L+ N + G+ F +L L+IL + +++
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDT 161
Query: 337 FSGELPVFIGNLPSLEELDLSENQL 361
F+ L LEEL++ + L
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDL 186
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASI-GNLSSLKELDLSMNIFSG 291
L L NQ+ E P +L +LKEL L N L + LP + +L+ L LDL N +
Sbjct: 45 LYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 292 EVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
AV L LK L + N + +LP I L L L L N+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 111 RYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGN---AYPGGILELR 167
R++ +P GI +++ YL+ D+ P L NL L L N A P G+ +
Sbjct: 30 RHASVPAGIPTNAQILYLH--DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD-- 85
Query: 168 KSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXXXXXXXXXXXXVRGRIPSSLGNL 227
LT L L+LG + T +P +P + L
Sbjct: 86 ---------SLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 228 LKLIHLDLSQNQLLSGEIP-ASIGNLGSLKELDLSGN 263
L HL L QNQL S IP + L SL L GN
Sbjct: 135 THLTHLALDQNQLKS--IPHGAFDRLSSLTHAYLFGN 169
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
S L NL +L L++ NQ+ +I A + +L LK L++ N +S + + NLS L
Sbjct: 237 SPLANLSQLTWLEIGTNQI--SDINA-VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNS 291
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318
L L+ N E VIG L++L L L +N+ + P
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 244 EIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSL 303
EIP ++ L L ELDLSGN LS+ P S L L++L + + NL SL
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 304 KALTLVENNFS 314
+ L NN +
Sbjct: 258 VEINLAHNNLT 268
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 233 LDLSQNQLLSGEIP-ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSG 291
L+L N+L + IP + L LKEL L N + S + + SL+ LDL G
Sbjct: 117 LELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL------G 168
Query: 292 EVPAVIGNLSSLKALTLV-ENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPS 350
E LK L+ + E F G + NLR L + +L + P+
Sbjct: 169 E----------LKRLSYISEGAFEG-----LSNLRYLNLAMCNLREIPNLTPLI-----K 208
Query: 351 LEELDLSENQLS 362
L+ELDLS N LS
Sbjct: 209 LDELDLSGNHLS 220
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++ L+ L +L+L L +IP ++ L L+EL+LSGN L P S L+SL++
Sbjct: 150 AAFEGLVNLRYLNLGMCNL--KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L L + +L SL+ L L NN L LE + L+ N +
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 233 LDLSQNQLLSGEIPA-SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL-SMNIFS 290
L+L N+L + +P + L L+EL L N + S + + SL+ LDL +
Sbjct: 88 LELFDNRLTT--VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE 145
Query: 291 GEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPS 350
A L +L+ L L N D+P +R LE L+LS N+ P L S
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVR-LEELELSGNRLDLIRPGSFQGLTS 203
Query: 351 LEELDLSENQLS 362
L +L L Q++
Sbjct: 204 LRKLWLMHAQVA 215
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 40/89 (44%)
Query: 252 LGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVEN 311
L L+EL++SGN P S LSSLK+L + + S L+SL L L N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 312 NFSGDLPAFIGNLRSLEILDLSLNKFSGE 340
N S LR L L L N ++ +
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPWNCD 305
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 97/241 (40%), Gaps = 52/241 (21%)
Query: 96 NLIHLEWLNLAGNDFRYSEIPPGIAN-LSRLSYLNLSDSFFIGQIPSEILE-LSNLVSLD 153
+L HLE L L N R E+ G N L+ L+ L L D++ + IPS E LS L L
Sbjct: 97 HLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153
Query: 154 LSGNAYPG----------GILELRKSSLTNLA-------EKLTNLETLNLGLVSIFNTPI 196
L N ++ L L L E L NL+ LNLG+ +I + P
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212
Query: 197 PHXXXXXXXXXXXXXXXXXVRGRIPSSLGNLLKLIHLDLSQNQLLSGEI-PASIGNLGSL 255
+L L+ L L++S N EI P S L SL
Sbjct: 213 --------------------------NLTPLVGLEELEMSGNHF--PEIRPGSFHGLSSL 244
Query: 256 KELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG 315
K+L + + +S + L+SL EL+L+ N S + L L L L N ++
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304
Query: 316 D 316
D
Sbjct: 305 D 305
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 220 IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL 279
IPS L +K LDLS N++ + + +L+ L L+ N +++ S +L SL
Sbjct: 20 IPSGLTEAVK--SLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 280 KELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS--GDLPAFIGNLRSLEILDL-SLNK 336
+ LDLS N S + LSSL L L+ N + G+ F +L L+IL + +++
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDT 135
Query: 337 FSGELPVFIGNLPSLEELDLSENQL 361
F+ L LEEL++ + L
Sbjct: 136 FTKIQRKDFAGLTFLEELEIDASDL 160
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L LL + HLDLS N+L + +P ++ L L+ L S N L + + NL L+EL
Sbjct: 459 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELL 514
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316
L N A I L S L L+ N G+
Sbjct: 515 LCNNRLQQS--AAIQPLVSCPRLVLL--NLQGN 543
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELD 283
L LL + HLDLS N+L + +P ++ L L+ L S N L + + NL L+EL
Sbjct: 459 LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELL 514
Query: 284 LSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316
L N A I L S L L+ N G+
Sbjct: 515 LCNNRLQQS--AAIQPLVSCPRLVLL--NLQGN 543
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 222 SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281
++ L+ L +L+L L +IP ++ L L+EL+LSGN L P S L+SL++
Sbjct: 150 AAFEGLVNLRYLNLGMCNL--KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
L L + +L SL+ L L NN L LE + L+ N +
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 276 LSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA--FIGNLRSLEILDLS 333
LSSL L L N F L++L+ LTL + N G + + F L SLE+L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 334 LNKFSGELPV-FIGNLPSLEELDLSENQLS 362
N P F N+ LDL+ N++
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 255 LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314
+KELDLSGN LS A + + L+ L+LS N+ + + +LS+L+ L L NN+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL-NNNYV 92
Query: 315 GDL 317
+L
Sbjct: 93 QEL 95
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 255 LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314
+KELDLSGN LS A + + L+ L+LS N+ + + +LS+L+ L L NN+
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL-NNNYV 92
Query: 315 GDL 317
+L
Sbjct: 93 QEL 95
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 227 LLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM 286
L +L ++ S N++ E A G G + E+ L+ N L + L SLK L L
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 287 NIFSGEVPAVIGN-----LSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFS 338
N + +GN LSS++ L+L +N + P L SL L+L N F+
Sbjct: 115 NRIT-----CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 20/76 (26%)
Query: 302 SLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG--ELPVFIGNL----------- 348
SL+AL V +N+ DLP +SL LD+S N FSG ELP + L
Sbjct: 258 SLEALN-VRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313
Query: 349 ---PSLEELDLSENQL 361
PSLEEL++S N+L
Sbjct: 314 DLPPSLEELNVSNNKL 329
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGE 292
+D S +L + IP++I K+LDL N LSS + L+ L+ L L+ N
Sbjct: 21 VDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 293 VPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLE 352
+ L +L+ L + +N L +L L L N+ P +L L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 353 ELDLSENQLS 362
L L N+L
Sbjct: 137 YLSLGYNELQ 146
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 26/96 (27%)
Query: 244 EIPASI-GNLGSLKELDLSGNILSSKLPASI-GNLSSLKELDLSMNIFSGEVPAVIGNLS 301
EIP + +L LK +DL N L++ LPAS+ N SLK L+L N+ + V G
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG--- 605
Query: 302 SLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
PAF R+L LD+ N F
Sbjct: 606 ----------------PAF----RNLTELDMRFNPF 621
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 26/96 (27%)
Query: 244 EIPASI-GNLGSLKELDLSGNILSSKLPASI-GNLSSLKELDLSMNIFSGEVPAVIGNLS 301
EIP + +L LK +DL N L++ LPAS+ N SLK L+L N+ + V G
Sbjct: 555 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG--- 610
Query: 302 SLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
PAF R+L LD+ N F
Sbjct: 611 ----------------PAF----RNLTELDMRFNPF 626
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 26/96 (27%)
Query: 244 EIPASI-GNLGSLKELDLSGNILSSKLPASI-GNLSSLKELDLSMNIFSGEVPAVIGNLS 301
EIP + +L LK +DL N L++ LPAS+ N SLK L+L N+ + V G
Sbjct: 560 EIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG--- 615
Query: 302 SLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337
PAF R+L LD+ N F
Sbjct: 616 ----------------PAF----RNLTELDMRFNPF 631
>pdb|3TE6|A Chain A, Crystal Structure Of The S. Cerevisiae Sir3 Aaa+ Domain
pdb|3TE6|B Chain B, Crystal Structure Of The S. Cerevisiae Sir3 Aaa+ Domain
Length = 318
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 67 CNENNGHVFKL--DLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSR 124
N ++ F+L D+ + + S +F+ IH++ L LAG D Y +I I+ +
Sbjct: 51 TNADDSTKFQLVNDVXDELITSSARKELPIFDYIHIDALELAGXDALYEKIWFAISKENL 110
Query: 125 LSYLNLSD-SFFIGQIPS 141
++L +F+I +P
Sbjct: 111 CGDISLEALNFYITNVPK 128
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 103/246 (41%), Gaps = 25/246 (10%)
Query: 95 FNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDL 154
F+ ++ ++L+ + S + ++ S+L L+L I + + + SNLV L+L
Sbjct: 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149
Query: 155 SGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHXXXXXXXXXXXXXXXX 214
SG + G E +L L + L+ LNL F
Sbjct: 150 SGCS---GFSEF---ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203
Query: 215 XVRGRIPSS-LGNLLK----LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSG--NILSS 267
R + S L L++ L+HLDLS + +L + L L+ L LS +I+
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263
Query: 268 KLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKA----LTLVENNFSGDLPAFIGN 323
L +G + +LK ++ +F G VP G L LK L + ++F+ IGN
Sbjct: 264 TL-LELGEIPTLK----TLQVF-GIVPD--GTLQLLKEALPHLQINCSHFTTIARPTIGN 315
Query: 324 LRSLEI 329
++ EI
Sbjct: 316 KKNQEI 321
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 31/85 (36%)
Query: 277 SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNK 336
SS L+L N V L+ L L+L +N L L IL L NK
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 337 FSGELPVFIGNLPSLEELDLSENQL 361
L L+EL L NQL
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,132,352
Number of Sequences: 62578
Number of extensions: 410856
Number of successful extensions: 1159
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 286
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)