Query 040025
Match_columns 362
No_of_seqs 312 out of 3541
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.8E-39 3.9E-44 334.0 27.3 318 10-361 27-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-32 3.2E-37 282.8 21.7 276 73-361 141-440 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.4E-28 3.1E-33 222.4 3.4 286 71-361 124-428 (873)
4 KOG4194 Membrane glycoprotein 99.9 8.4E-28 1.8E-32 217.4 5.2 275 72-361 78-353 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.3E-27 2.7E-32 218.1 -5.9 280 72-361 55-351 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.5E-27 5.4E-32 216.1 -4.0 253 93-362 50-304 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 6.1E-25 1.3E-29 190.9 -5.3 90 271-362 429-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 6.1E-25 1.3E-29 190.9 -11.3 263 73-361 46-309 (565)
9 PLN03210 Resistant to P. syrin 99.8 6.3E-20 1.4E-24 190.5 20.8 265 71-360 610-904 (1153)
10 PRK15370 E3 ubiquitin-protein 99.8 1.5E-19 3.1E-24 176.9 20.2 245 74-362 180-428 (754)
11 PLN03210 Resistant to P. syrin 99.8 4.5E-19 9.8E-24 184.1 24.2 262 72-360 589-880 (1153)
12 PRK15387 E3 ubiquitin-protein 99.8 4.9E-19 1.1E-23 172.5 18.2 244 75-362 204-458 (788)
13 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-21 5.5E-26 175.0 1.1 275 77-361 3-319 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-21 1.4E-25 172.3 3.3 258 102-362 2-291 (319)
15 KOG0618 Serine/threonine phosp 99.8 2.5E-21 5.5E-26 184.1 -3.7 267 73-360 220-487 (1081)
16 KOG4237 Extracellular matrix p 99.8 5.5E-21 1.2E-25 166.1 -4.0 275 72-361 67-358 (498)
17 PRK15387 E3 ubiquitin-protein 99.7 2.8E-17 6.1E-22 160.3 15.9 227 72-345 222-465 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 2.7E-17 5.9E-22 161.1 13.5 224 98-362 178-401 (754)
19 KOG0618 Serine/threonine phosp 99.7 1.2E-19 2.6E-24 172.8 -4.4 267 71-359 240-510 (1081)
20 KOG0617 Ras suppressor protein 99.7 1.3E-19 2.8E-24 140.6 -6.4 167 93-275 28-194 (264)
21 KOG0617 Ras suppressor protein 99.6 3.3E-18 7.1E-23 132.9 -5.3 157 119-290 29-186 (264)
22 KOG4237 Extracellular matrix p 99.6 5.6E-18 1.2E-22 147.5 -5.4 251 99-362 68-335 (498)
23 PLN03150 hypothetical protein; 99.5 1.4E-13 3E-18 134.3 14.1 153 5-190 365-526 (623)
24 KOG3207 Beta-tubulin folding c 99.4 3.4E-14 7.5E-19 125.7 -0.2 213 95-315 118-340 (505)
25 KOG1909 Ran GTPase-activating 99.4 2.3E-14 5.1E-19 123.4 -1.7 240 94-337 26-310 (382)
26 KOG1909 Ran GTPase-activating 99.4 1.7E-13 3.8E-18 118.1 1.6 240 117-361 24-310 (382)
27 KOG3207 Beta-tubulin folding c 99.3 4E-13 8.7E-18 119.0 -1.3 212 120-340 118-341 (505)
28 COG4886 Leucine-rich repeat (L 99.2 2.1E-11 4.6E-16 113.5 8.4 177 120-314 113-290 (394)
29 KOG0532 Leucine-rich repeat (L 99.2 3.2E-13 7E-18 123.3 -4.5 193 147-359 75-270 (722)
30 PLN03150 hypothetical protein; 99.2 3.5E-11 7.6E-16 117.6 8.9 106 255-360 420-526 (623)
31 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 4.9E-16 113.4 7.2 200 126-344 96-296 (394)
32 KOG0532 Leucine-rich repeat (L 99.2 7.5E-13 1.6E-17 120.9 -3.0 175 96-290 73-247 (722)
33 KOG1259 Nischarin, modulator o 99.2 5.3E-12 1.2E-16 107.0 0.4 127 228-361 284-411 (490)
34 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.5E-15 95.6 5.9 129 94-236 15-148 (175)
35 PF14580 LRR_9: Leucine-rich r 99.1 9.7E-11 2.1E-15 94.7 5.7 107 202-314 17-126 (175)
36 KOG1259 Nischarin, modulator o 99.1 9.6E-11 2.1E-15 99.5 4.0 113 243-361 274-386 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.2E-10 7E-15 113.5 7.4 62 94-157 567-628 (889)
38 KOG2120 SCF ubiquitin ligase, 99.0 4.3E-12 9.2E-17 107.4 -7.2 181 99-287 186-373 (419)
39 KOG2120 SCF ubiquitin ligase, 99.0 2.6E-12 5.6E-17 108.7 -8.5 179 179-359 185-373 (419)
40 KOG4341 F-box protein containi 98.9 1.4E-11 3.1E-16 108.8 -7.0 283 72-360 138-437 (483)
41 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3E-14 72.3 2.6 61 301-361 1-61 (61)
42 KOG2982 Uncharacterized conser 98.8 1E-09 2.2E-14 93.2 0.7 230 94-331 41-285 (418)
43 PF13855 LRR_8: Leucine rich r 98.8 4.8E-09 1E-13 69.8 3.3 57 255-311 3-59 (61)
44 KOG0531 Protein phosphatase 1, 98.8 5.3E-10 1.2E-14 104.5 -2.1 195 97-314 71-268 (414)
45 KOG4658 Apoptotic ATPase [Sign 98.7 7.6E-09 1.6E-13 103.8 3.5 156 71-240 570-729 (889)
46 KOG2982 Uncharacterized conser 98.6 6.9E-09 1.5E-13 88.3 0.6 224 124-355 46-285 (418)
47 KOG0531 Protein phosphatase 1, 98.6 2.5E-09 5.4E-14 100.0 -2.7 217 120-360 69-288 (414)
48 COG5238 RNA1 Ran GTPase-activa 98.5 9.6E-09 2.1E-13 86.3 -1.3 192 94-290 26-255 (388)
49 PF08263 LRRNT_2: Leucine rich 98.5 1.7E-07 3.7E-12 57.1 4.5 42 11-68 2-43 (43)
50 KOG1859 Leucine-rich repeat pr 98.5 2E-09 4.3E-14 101.6 -6.6 175 174-361 104-291 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.4 4.4E-08 9.4E-13 82.5 0.5 239 72-314 30-316 (388)
52 KOG4341 F-box protein containi 98.4 2.5E-09 5.3E-14 94.9 -8.5 277 72-354 164-457 (483)
53 KOG1859 Leucine-rich repeat pr 98.3 5.3E-08 1.2E-12 92.2 -2.9 179 174-362 79-267 (1096)
54 KOG4579 Leucine-rich repeat (L 98.2 3.6E-08 7.8E-13 74.5 -4.1 108 206-319 29-140 (177)
55 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.2E-11 85.4 3.1 149 204-354 122-280 (699)
56 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.7E-11 51.4 3.6 37 301-338 1-37 (44)
57 KOG3665 ZYG-1-like serine/thre 98.1 9.8E-07 2.1E-11 86.7 0.9 32 276-307 249-281 (699)
58 KOG4579 Leucine-rich repeat (L 98.0 2.5E-07 5.5E-12 70.0 -3.0 109 75-195 30-139 (177)
59 KOG1947 Leucine rich repeat pr 98.0 5.3E-07 1.1E-11 86.2 -2.4 114 97-216 187-307 (482)
60 PF12799 LRR_4: Leucine Rich r 97.9 2.2E-05 4.8E-10 47.9 4.0 36 278-314 2-37 (44)
61 KOG1644 U2-associated snRNP A' 97.8 5.2E-05 1.1E-09 61.5 5.7 85 99-193 43-127 (233)
62 PRK15386 type III secretion pr 97.8 8.6E-05 1.9E-09 67.8 7.4 138 175-336 48-188 (426)
63 KOG1644 U2-associated snRNP A' 97.7 9.6E-05 2.1E-09 60.0 6.0 81 147-239 42-124 (233)
64 PRK15386 type III secretion pr 97.6 0.00021 4.7E-09 65.3 8.1 135 200-359 48-187 (426)
65 KOG1947 Leucine rich repeat pr 97.5 8.3E-06 1.8E-10 78.0 -2.9 34 327-360 403-438 (482)
66 KOG2739 Leucine-rich acidic nu 97.4 6.8E-05 1.5E-09 63.3 1.6 105 224-331 39-149 (260)
67 PF13306 LRR_5: Leucine rich r 97.3 0.0013 2.9E-08 50.5 7.5 98 249-351 31-128 (129)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00033 7.2E-09 59.2 2.6 61 96-159 41-103 (260)
69 PF13306 LRR_5: Leucine rich r 97.0 0.0036 7.7E-08 48.1 7.3 105 200-310 8-112 (129)
70 KOG2123 Uncharacterized conser 96.8 5.4E-05 1.2E-09 64.4 -4.2 104 72-186 19-124 (388)
71 KOG2123 Uncharacterized conser 96.8 3.3E-05 7.2E-10 65.7 -5.5 100 179-283 19-123 (388)
72 KOG4308 LRR-containing protein 96.5 7.6E-06 1.6E-10 77.1 -13.2 194 74-267 89-304 (478)
73 KOG4308 LRR-containing protein 96.2 2.4E-05 5.2E-10 73.8 -11.2 90 251-340 202-305 (478)
74 PF00560 LRR_1: Leucine Rich R 95.4 0.0056 1.2E-07 31.0 0.6 18 327-345 2-19 (22)
75 KOG3864 Uncharacterized conser 95.1 0.0035 7.5E-08 51.2 -1.4 83 254-336 102-187 (221)
76 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 29.9 0.5 20 124-144 1-20 (22)
77 PF13504 LRR_7: Leucine rich r 93.6 0.05 1.1E-06 25.5 1.4 13 326-338 2-14 (17)
78 KOG3864 Uncharacterized conser 93.5 0.0062 1.3E-07 49.7 -3.0 82 205-286 102-185 (221)
79 PF13516 LRR_6: Leucine Rich r 90.1 0.061 1.3E-06 27.7 -0.6 16 325-340 2-17 (24)
80 KOG0473 Leucine-rich repeat pr 89.1 0.0063 1.4E-07 50.9 -7.3 88 249-339 38-125 (326)
81 smart00370 LRR Leucine-rich re 84.7 1.1 2.4E-05 23.3 2.3 14 325-338 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 84.7 1.1 2.4E-05 23.3 2.3 14 325-338 2-15 (26)
83 KOG0473 Leucine-rich repeat pr 84.3 0.017 3.7E-07 48.3 -7.2 90 223-316 37-126 (326)
84 KOG4242 Predicted myosin-I-bin 83.2 6.7 0.00015 36.8 8.0 34 253-286 354-389 (553)
85 smart00368 LRR_RI Leucine rich 80.4 1.7 3.7E-05 23.2 2.0 13 349-361 2-14 (28)
86 smart00365 LRR_SD22 Leucine-ri 76.9 2.5 5.5E-05 22.2 1.9 13 349-361 2-14 (26)
87 KOG3763 mRNA export factor TAP 73.2 1.4 3.1E-05 41.8 0.7 89 96-185 216-307 (585)
88 smart00364 LRR_BAC Leucine-ric 70.9 2.8 6.1E-05 22.0 1.2 18 325-343 2-19 (26)
89 KOG3763 mRNA export factor TAP 70.0 2.3 4.9E-05 40.5 1.2 79 275-355 216-307 (585)
90 smart00367 LRR_CC Leucine-rich 62.1 6.3 0.00014 20.4 1.5 13 348-360 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-39 Score=333.96 Aligned_cols=318 Identities=40% Similarity=0.632 Sum_probs=198.1
Q ss_pred cHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccC
Q 040025 10 HDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCSWDGVECNENNGHVFKLDLSNSCLQGSIN 89 (362)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~ 89 (362)
+++|+.||++||+.+..+. ....+|.. ..+||.|.||.|.. .++|+.|+++++++.+..+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~----------------~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~ 86 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL----------------KYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKIS 86 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc----------------ccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCC
Confidence 6789999999999985322 25688976 67899999999975 4689999999999998877
Q ss_pred CccccccCCCCCEEEcCCCCCCCCCCCccC-CCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccC
Q 040025 90 SSSGLFNLIHLEWLNLAGNDFRYSEIPPGI-ANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRK 168 (362)
Q Consensus 90 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (362)
. .+..+++|++|++++|.+.+. +|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+.
T Consensus 87 ~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~-------- 153 (968)
T PLN00113 87 S--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS-------- 153 (968)
T ss_pred h--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc--------
Confidence 6 788999999999999988765 66554 3777888888877777665554 34566666666666442
Q ss_pred CCchhhhhcCCCCCEEEcCCcCCCCCC-----------------------CCCCcCCCCCCcEEEeecccCCccCCcccc
Q 040025 169 SSLTNLAEKLTNLETLNLGLVSIFNTP-----------------------IPHNLGNLSSLRFLSLNNCLVRGRIPSSLG 225 (362)
Q Consensus 169 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------------l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 225 (362)
+.+|..+..+++|++|++++|.+.+.. ++..+..+++|++|++++|.+.+.+|..+.
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 233344444455555555544444333 144444445555555555554444444455
Q ss_pred CCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCE
Q 040025 226 NLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKA 305 (362)
Q Consensus 226 ~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 305 (362)
++++|+.|++++|. ..+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus 234 ~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 234 GLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred cCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 55555555555542 22334444555555555555555555555555555555555555555555555555555555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 306 LTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 306 L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 55555555555555555555666666666666555565566666666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-32 Score=282.83 Aligned_cols=276 Identities=38% Similarity=0.551 Sum_probs=152.7
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
++++|++++|.+.+..|. .+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 141 ~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCEEECcCCcccccCCh--HHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 344555555554444444 455555566666655555443 55555555556666665555555555555555556666
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCE
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIH 232 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 232 (362)
++++|.+. +.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+.++++|+.
T Consensus 218 ~L~~n~l~--------~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 218 YLGYNNLS--------GEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred ECcCCccC--------CcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 65555432 234455556666666666666655544 555566666666666666665555555556666666
Q ss_pred EeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCc
Q 040025 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENN 312 (362)
Q Consensus 233 L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 312 (362)
|++++|. ..+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 289 L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 289 LDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 6666553 233455555555566666666665555555555555556666666555555555555555555555555555
Q ss_pred ccccCCccc------------------------cCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 313 FSGDLPAFI------------------------GNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 313 l~~~~~~~l------------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+.+.+|..+ ..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 554444444 4444455555555555544455555555555555555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-28 Score=222.40 Aligned_cols=286 Identities=27% Similarity=0.249 Sum_probs=194.8
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
.+|++.|+|.+|-+...... .+..++.|+.|||+.|.++.. -...|.+-.++++|+|++|.|+..-...|..+.+|.
T Consensus 124 sghl~~L~L~~N~I~sv~se--~L~~l~alrslDLSrN~is~i-~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSE--ELSALPALRSLDLSRNLISEI-PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred ccceeEEeeeccccccccHH--HHHhHhhhhhhhhhhchhhcc-cCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 47899999999887654443 667777777777777766643 222344444555555555555433333444444455
Q ss_pred EEEcCCCCCCCCccc------------ccC---CCc-hhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc
Q 040025 151 SLDLSGNAYPGGILE------------LRK---SSL-TNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC 214 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~------------~~~---~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n 214 (362)
+|.|+.|.++.-... ++. ..+ --.+..+++|+.|.+..|.+.... ...|..|.++++|+|..|
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccc
Confidence 555555443110000 000 111 112344555555556666655554 556677777888888888
Q ss_pred cCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccc
Q 040025 215 LVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVP 294 (362)
Q Consensus 215 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 294 (362)
++...-...+.+++.|+.|++++|.+.... ++.+..+++|++|++++|+++...+..|..+..|++|.|++|.++....
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE 358 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence 777666666777888888888888665433 5667778888888888888887777778888888888888888876556
Q ss_pred hhhhCCCCCCEEecccCcccccCC---ccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 295 AVIGNLSSLKALTLVENNFSGDLP---AFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 295 ~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
.+|..+++|+.|+|++|.+...+- ..+.+++.|+.|++.+|++.......|..++.|++|||.+|+|
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 677888999999999998876543 3467799999999999999965567899999999999999987
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8.4e-28 Score=217.42 Aligned_cols=275 Identities=28% Similarity=0.251 Sum_probs=191.7
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
..+..|++++|.+...-+. .|.++++|+.+.+..|.++. +|.......+|+.|+|.+|.|...-...+..++.|+.
T Consensus 78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 4677899999998866555 78899999999999998874 6777777778999999999988777788999999999
Q ss_pred EEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKL 230 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 230 (362)
|||+.|.+. .++ ..+..-.++++|+|++|.++... ...|.++.+|..|.|+.|.++...+..|.++++|
T Consensus 154 lDLSrN~is---------~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 154 LDLSRNLIS---------EIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred hhhhhchhh---------cccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchh
Confidence 999999763 222 12334578999999999999887 7788888999999999999986666777789999
Q ss_pred CEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEeccc
Q 040025 231 IHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVE 310 (362)
Q Consensus 231 ~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 310 (362)
+.|+|..|.+.-.. -..|..+++|+.|.+..|.+...-..+|..+.++++|+|..|+++..-..++.++..|+.|++++
T Consensus 224 ~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 99999888542211 12345566666666666666555555555555566666666555544444455555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 311 NNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 311 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
|.|...-+..+..+++|++|+|++|+++..-+..|..+..|++|+|+.|.+
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 555544444455555555555555555544444454445555555555443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.3e-27 Score=218.08 Aligned_cols=280 Identities=28% Similarity=0.392 Sum_probs=178.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
+.+..|.+.+|.+..... .+..++.|+.+++..|++....+|..+-++..|..|++++|++. ++|..+...+++-.
T Consensus 55 qkLEHLs~~HN~L~~vhG---ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHG---ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHhhhh---hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEE
Confidence 445666777776653222 46677888888888888877778888888888888888888875 77888888888888
Q ss_pred EEcCCCCCCCCc------------cccc---CCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccC
Q 040025 152 LDLSGNAYPGGI------------LELR---KSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLV 216 (362)
Q Consensus 152 L~l~~n~l~~~~------------~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 216 (362)
|+|++|+|..-. ++++ -..+|+....+.+|+.|++++|.+.-.. ...+..|.+|+.|.+++.+-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-LrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ-LRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH-HhcCccchhhhhhhcccccc
Confidence 888888762100 0000 0223334444445555555555443333 23334444555555554432
Q ss_pred C-ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccch
Q 040025 217 R-GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPA 295 (362)
Q Consensus 217 ~-~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 295 (362)
+ ..+|.++..+.+|..+|++.|+.. .+|+.+-++++|+.|++++|+++ ......+.+.+|++|+|+.|+++ .+|.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchH
Confidence 1 345556666666666666666442 24555666666666666666666 33334445566666777777666 6677
Q ss_pred hhhCCCCCCEEecccCccc-ccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 296 VIGNLSSLKALTLVENNFS-GDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 296 ~l~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
++..+++|+.|.+.+|+++ ..+|..++++..|+.+..++|.+. .+|..+++|..|+.|.|+.|.+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 7777777777777777654 246777777777777777777776 7788888888888888888865
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.5e-27 Score=216.14 Aligned_cols=253 Identities=30% Similarity=0.416 Sum_probs=154.0
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCccc-ccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCc
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFI-GQIPSEILELSNLVSLDLSGNAYPGGILELRKSSL 171 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (362)
.++.+.+|++|.+..|++.. +-..+..++.||.+.+..|++. .-+|..+.++..|+.|||++|++ ..+
T Consensus 50 EL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL---------~Ev 118 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL---------REV 118 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh---------hhc
Confidence 34455555555555554432 2333445555555555555542 23566666666677777777655 455
Q ss_pred hhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCC
Q 040025 172 TNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGN 251 (362)
Q Consensus 172 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~ 251 (362)
|..+..-+++-+|+++.|.+.... ...+.++..|-.|++++|.+. .+|..+..+..|+.|.|++|+...-++ ..+..
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL-rQLPs 195 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL-RQLPS 195 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH-hcCcc
Confidence 656666666666677766665544 344556666667777777665 556666777777777777775433221 12334
Q ss_pred CCCCCEEEccCCcCC-ccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEE
Q 040025 252 LGSLKELDLSGNILS-SKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEIL 330 (362)
Q Consensus 252 ~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 330 (362)
+++|++|++++.+-+ ..+|..+..+.+|+.++++.|.+. ..|+.+..+++|+.|+|++|.++ .+....+...+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhh
Confidence 555666666665433 235666666777777777777776 67777777777777777777776 443344455667777
Q ss_pred EccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 331 DLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 331 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+++.|+++ .+|+.++.+++|+.|.+.+|+++
T Consensus 274 NlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 274 NLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 77777777 66777777777777766666653
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=6.1e-25 Score=190.90 Aligned_cols=90 Identities=33% Similarity=0.589 Sum_probs=67.1
Q ss_pred ccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCccc----------------------ccCCc-cccCCCCC
Q 040025 271 ASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS----------------------GDLPA-FIGNLRSL 327 (362)
Q Consensus 271 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----------------------~~~~~-~l~~~~~L 327 (362)
..++.+++|..|+|++|.+. .+|..++.+..|+.|+++.|++. +.++. .+..+.+|
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 33445566667777666665 56666666666666666666554 13333 36678999
Q ss_pred CEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 328 EILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 328 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
.+|||.+|.+. .+|..+++|.+|++|+++||+|+
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999999 78999999999999999999985
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=6.1e-25 Score=190.89 Aligned_cols=263 Identities=36% Similarity=0.428 Sum_probs=228.8
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
.+..+.+++|.+....+ .+.++..|..+++.+|.+.. +|++++.+..++.+++++|.+. .+|+.++.+.+|+.+
T Consensus 46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 45678888888774444 48889999999999998764 8899999999999999999975 899999999999999
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCE
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIH 232 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 232 (362)
+++.|.+ ..+++.++.+-.|+.++...|.++.. |..+.++.++..+++.+|.+....| ..-+++.|+.
T Consensus 120 ~~s~n~~---------~el~~~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ 187 (565)
T KOG0472|consen 120 DCSSNEL---------KELPDSIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKH 187 (565)
T ss_pred hccccce---------eecCchHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHh
Confidence 9999976 66777888899999999999998754 6888899999999999999984444 4555999999
Q ss_pred EeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhh-hCCCCCCEEecccC
Q 040025 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVI-GNLSSLKALTLVEN 311 (362)
Q Consensus 233 L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n 311 (362)
||...|.. +.+|+.++.+.+|..|++..|++. ..| .|..+..|++|+++.|++. .+|... ..++++..|++.+|
T Consensus 188 ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 188 LDCNSNLL--ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred cccchhhh--hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccc
Confidence 99999844 468999999999999999999998 566 6889999999999999998 566655 48999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 312 NFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 312 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+++ ++|..++.+++|++||+++|.++ .+|..++++ .|+.|-+.|||+
T Consensus 263 klk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 263 KLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 998 89998999999999999999999 688889999 999999999997
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=6.3e-20 Score=190.48 Aligned_cols=265 Identities=29% Similarity=0.377 Sum_probs=179.2
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
...++.|++.++.+.. .+. .+..+++|+.|+++++..... +| .+..+++|++|++++|.....+|..+..+++|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWD--GVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccc-ccc--ccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 3578899999988764 333 577899999999988754332 44 478889999999998876678898899999999
Q ss_pred EEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccc------
Q 040025 151 SLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSL------ 224 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~------ 224 (362)
.|++++|.. + ..+|..+ ++++|+.|++++|...... +. ...+|++|++++|.+. .+|..+
T Consensus 685 ~L~L~~c~~----L----~~Lp~~i-~l~sL~~L~Lsgc~~L~~~-p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~ 750 (1153)
T PLN03210 685 DLDMSRCEN----L----EILPTGI-NLKSLYRLNLSGCSRLKSF-PD---ISTNISWLDLDETAIE-EFPSNLRLENLD 750 (1153)
T ss_pred EEeCCCCCC----c----CccCCcC-CCCCCCEEeCCCCCCcccc-cc---ccCCcCeeecCCCccc-cccccccccccc
Confidence 999998742 1 3344333 5777888888777543222 22 1345666666666543 333221
Q ss_pred ------------------------cCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCC
Q 040025 225 ------------------------GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLK 280 (362)
Q Consensus 225 ------------------------~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 280 (362)
..+++|+.|++++|... ..+|..+..+++|+.|++++|...+.+|..+ .+++|+
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~ 828 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE 828 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCc-cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccC
Confidence 12345667777766432 3567777777777777777775444556554 567777
Q ss_pred EEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 281 ELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 281 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
.|++++|..-..+|.. ..+|+.|+|++|.+. .+|..+..+++|++|+|++|.-...+|..+..+++|+.+++++|.
T Consensus 829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7777776543344432 356778888887776 677777788888888888865444577777777888888887774
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.5e-19 Score=176.95 Aligned_cols=245 Identities=26% Similarity=0.396 Sum_probs=163.6
Q ss_pred EEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEE
Q 040025 74 VFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLD 153 (362)
Q Consensus 74 v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~ 153 (362)
.+.|++.+++++. +|. .+ .++|+.|++++|.++. +|..+. ++|++|++++|.+. .+|..+. ++|+.|+
T Consensus 180 ~~~L~L~~~~Lts-LP~--~I--p~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 180 KTELRLKILGLTT-IPA--CI--PEQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred ceEEEeCCCCcCc-CCc--cc--ccCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 3455555555542 222 12 2457777777776663 454433 46777777777765 4555443 4677777
Q ss_pred cCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEE
Q 040025 154 LSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHL 233 (362)
Q Consensus 154 l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 233 (362)
+++|.+ ..+|..+. .+|+.|++++|.++.. |..+. ++|+.|++++|.+. .+|..+. ++|+.|
T Consensus 248 Ls~N~L---------~~LP~~l~--s~L~~L~Ls~N~L~~L--P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L 309 (754)
T PRK15370 248 LSINRI---------TELPERLP--SALQSLDLFHNKISCL--PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHL 309 (754)
T ss_pred CcCCcc---------CcCChhHh--CCCCEEECcCCccCcc--ccccC--CCCcEEECCCCccc-cCcccch--hhHHHH
Confidence 777765 33444332 4688888888877642 44332 47888888888776 3444332 467788
Q ss_pred eCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcc
Q 040025 234 DLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNF 313 (362)
Q Consensus 234 ~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 313 (362)
++++|.+. .+|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|+++ .+|..+ .++|+.|++++|.+
T Consensus 310 ~Ls~N~Lt--~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 310 NVQSNSLT--ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred HhcCCccc--cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence 88887543 245433 3689999999998884 66555 368999999999988 567655 36899999999998
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCchhh----hcCCCCCCEEeCCCCCCC
Q 040025 314 SGDLPAFIGNLRSLEILDLSLNKFSGELPVF----IGNLPSLEELDLSENQLS 362 (362)
Q Consensus 314 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~ls 362 (362)
+ .+|..+. ..|+.|++++|++. .+|.. +..++.+..|++.+|+|+
T Consensus 380 t-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 380 T-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred C-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8 5666553 36899999999988 45544 445688999999999985
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=4.5e-19 Score=184.13 Aligned_cols=262 Identities=27% Similarity=0.337 Sum_probs=189.2
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
..++.|.+.++.+. ..|. .+ ...+|+.|++.++.+.. ++..+..+++|+.|+++++...+.+|. +..+++|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~--~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPS--NF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLET 661 (1153)
T ss_pred cccEEEEecCCCCC-CCCC--cC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccE
Confidence 34677777777665 3333 23 56789999999887763 677788899999999988765566764 778899999
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLI 231 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 231 (362)
|++++|.. + ..+|..+..+++|+.|++++|...... |..+ ++++|+.|++++|.....+|.. ..+|+
T Consensus 662 L~L~~c~~----L----~~lp~si~~L~~L~~L~L~~c~~L~~L-p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 662 LKLSDCSS----L----VELPSSIQYLNKLEDLDMSRCENLEIL-PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred EEecCCCC----c----cccchhhhccCCCCEEeCCCCCCcCcc-CCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 99988742 1 567778888999999999987544332 4433 6889999999988765555542 45788
Q ss_pred EEeCCCCCCCccccCccc------------------------------CCCCCCCEEEccCCcCCccCCccccCCCCCCE
Q 040025 232 HLDLSQNQLLSGEIPASI------------------------------GNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281 (362)
Q Consensus 232 ~L~l~~n~~~~~~l~~~l------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 281 (362)
.|++++|.+. .+|..+ ..+++|+.|++++|...+.+|..++++++|+.
T Consensus 729 ~L~L~~n~i~--~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 729 WLDLDETAIE--EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eeecCCCccc--cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 8888888542 244322 11246777777777666677777888888888
Q ss_pred EEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 282 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
|++++|..-+.+|... .+++|+.|++++|.....+|.. ..+|+.|+|++|.+. .+|..+..+++|++|++++|+
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 8888765333566554 5778888888887655455543 357889999999888 688899999999999999863
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=4.9e-19 Score=172.45 Aligned_cols=244 Identities=27% Similarity=0.292 Sum_probs=145.2
Q ss_pred EEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEc
Q 040025 75 FKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDL 154 (362)
Q Consensus 75 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l 154 (362)
..|+++.++++ .+|. .+. ++|+.|++.+|.++. +|. ..++|++|++++|.++ .+|.. .++|+.|++
T Consensus 204 ~~LdLs~~~Lt-sLP~--~l~--~~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 204 AVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred cEEEcCCCCCC-cCCc--chh--cCCCEEEccCCcCCC--CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34666666665 3333 232 356666666666553 332 2356666666666655 34431 245555555
Q ss_pred CCCCCCCCc--------ccccC---CCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCcc
Q 040025 155 SGNAYPGGI--------LELRK---SSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSS 223 (362)
Q Consensus 155 ~~n~l~~~~--------~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~ 223 (362)
++|.+..-. +.+.. ..+|. ..++|++|++++|.++.. +.. ..+|+.|.+++|.+. .+|.
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~L--p~l---p~~L~~L~Ls~N~L~-~LP~- 339 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL--PAL---PSELCKLWAYNNQLT-SLPT- 339 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCccccC--CCC---cccccccccccCccc-cccc-
Confidence 555431100 00000 11221 124566666666655542 111 124555555555554 2332
Q ss_pred ccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCC
Q 040025 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSL 303 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 303 (362)
...+|+.|++++|.+. .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|.++ .+|.. .++|
T Consensus 340 --lp~~Lq~LdLS~N~Ls--~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 340 --LPSGLQELSVSDNQLA--SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred --cccccceEecCCCccC--CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCC
Confidence 1236777788777543 24432 3467777777777773 4542 357888999999888 45543 3578
Q ss_pred CEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 304 KALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 304 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|+
T Consensus 405 ~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 405 KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 99999999988 46654 346888999999998 68999999999999999999985
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=2.5e-21 Score=175.03 Aligned_cols=275 Identities=26% Similarity=0.286 Sum_probs=185.6
Q ss_pred EEcCCCCCcc-ccCCccccccCCCCCEEEcCCCCCCCC---CCCccCCCCCCCCEEECCCCccc------ccCchhhcCC
Q 040025 77 LDLSNSCLQG-SINSSSGLFNLIHLEWLNLAGNDFRYS---EIPPGIANLSRLSYLNLSDSFFI------GQIPSEILEL 146 (362)
Q Consensus 77 L~l~~~~l~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~l~------~~~p~~l~~l 146 (362)
|+|.++.+.+ .... .+..+..|+.|+++++.++.. .++..+...+.|++++++++.+. ..++..+..+
T Consensus 3 l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 5555555542 2222 455667788888888876432 13445666777888888877654 2234556677
Q ss_pred CCCCEEEcCCCCCCCCcccccCCCchhhhhcC---CCCCEEEcCCcCCCCCCC---CCCcCCC-CCCcEEEeecccCCcc
Q 040025 147 SNLVSLDLSGNAYPGGILELRKSSLTNLAEKL---TNLETLNLGLVSIFNTPI---PHNLGNL-SSLRFLSLNNCLVRGR 219 (362)
Q Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~l---~~~~~~~-~~L~~L~l~~n~l~~~ 219 (362)
++|+.|++++|.+.+ ..+..+..+ ++|++|++++|.+++... ...+..+ ++|+.|++++|.+.+.
T Consensus 81 ~~L~~L~l~~~~~~~--------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 81 CGLQELDLSDNALGP--------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred CceeEEEccCCCCCh--------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 888888888886532 122223223 458888888888764331 2234555 7889999998887732
Q ss_pred ----CCccccCCCCCCEEeCCCCCCCccc---cCcccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCc
Q 040025 220 ----IPSSLGNLLKLIHLDLSQNQLLSGE---IPASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNI 288 (362)
Q Consensus 220 ----~~~~~~~~~~L~~L~l~~n~~~~~~---l~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 288 (362)
+...+..+++|+.|++++|...... ++..+...++|++|++++|.+.+. +...+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 2334566778999999988654322 233445567999999999988643 33455678899999999999
Q ss_pred CCCccchhhh-----CCCCCCEEecccCcccc----cCCccccCCCCCCEEEccCCcCCCC----chhhhcCC-CCCCEE
Q 040025 289 FSGEVPAVIG-----NLSSLKALTLVENNFSG----DLPAFIGNLRSLEILDLSLNKFSGE----LPVFIGNL-PSLEEL 354 (362)
Q Consensus 289 l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~-~~L~~L 354 (362)
+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+.+. +...+... +.|+++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 8854333322 24789999999998873 2334556678999999999999965 44444445 789999
Q ss_pred eCCCCCC
Q 040025 355 DLSENQL 361 (362)
Q Consensus 355 ~l~~n~l 361 (362)
++.+|++
T Consensus 313 ~~~~~~~ 319 (319)
T cd00116 313 WVKDDSF 319 (319)
T ss_pred ccCCCCC
Confidence 9999985
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=6.5e-21 Score=172.34 Aligned_cols=258 Identities=27% Similarity=0.251 Sum_probs=190.4
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccc----cCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhc
Q 040025 102 WLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIG----QIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177 (362)
Q Consensus 102 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 177 (362)
.|+|..+.+++......+..+++|+.|+++++.+.. .++..+...+.|++++++++.+... ......++..+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI--PRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc--chHHHHHHHHHHh
Confidence 467888888766566677788899999999998753 2566677788999999999876420 0000234456777
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCC---CCCcEEEeecccCCc----cCCccccCC-CCCCEEeCCCCCCCcc---ccC
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNL---SSLRFLSLNNCLVRG----RIPSSLGNL-LKLIHLDLSQNQLLSG---EIP 246 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~n~l~~----~~~~~~~~~-~~L~~L~l~~n~~~~~---~l~ 246 (362)
+++|++|++++|.+.... +..+..+ ++|++|++++|.+.+ .+...+..+ ++|+.|++++|.+... .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 899999999999987543 3444444 459999999998873 223345566 8999999999976422 234
Q ss_pred cccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCcc----chhhhCCCCCCEEecccCcccccCC
Q 040025 247 ASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGEV----PAVIGNLSSLKALTLVENNFSGDLP 318 (362)
Q Consensus 247 ~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 318 (362)
..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++.. ...+..+++|++|++++|.+.+...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 4566778999999999998853 3334556679999999999987543 3445678899999999999886333
Q ss_pred cccc-----CCCCCCEEEccCCcCCC----CchhhhcCCCCCCEEeCCCCCCC
Q 040025 319 AFIG-----NLRSLEILDLSLNKFSG----ELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 319 ~~l~-----~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
..+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 3222 24799999999999973 24456677799999999999885
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.5e-21 Score=184.09 Aligned_cols=267 Identities=27% Similarity=0.308 Sum_probs=165.3
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
.++.|+...|.++...+ -..-.+|++++++.+.+.. +|+.++.+.+|+.+++.+|.++ .+|..+....+|+.|
T Consensus 220 ~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDV----HPVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred chheeeeccCcceeecc----ccccccceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 45555555555542111 1223467777777777664 5677777777777777777773 667777777777777
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCC-CcEEEeecccCCccCCccccCCCCCC
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSS-LRFLSLNNCLVRGRIPSSLGNLLKLI 231 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~ 231 (362)
++..|.+ .-+|.....++.|++|++..|.+.... ...+..... |+.|+.+.|.+.......-..++.|+
T Consensus 293 ~~~~nel---------~yip~~le~~~sL~tLdL~~N~L~~lp-~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 293 SAAYNEL---------EYIPPFLEGLKSLRTLDLQSNNLPSLP-DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred Hhhhhhh---------hhCCCcccccceeeeeeehhccccccc-hHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 7777754 455556666777777777777775543 222222222 45555555554422111112244567
Q ss_pred EEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccC
Q 040025 232 HLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVEN 311 (362)
Q Consensus 232 ~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 311 (362)
.|++.+|. ++...-..+.++++|++|++++|++.......+.++..|++|+|++|+++ .+|..+..++.|+.|...+|
T Consensus 363 ~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 363 ELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHhcCc-ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence 77777773 34444445667777777777777776444445667777777777777777 56677777777777777777
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 312 NFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 312 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
.+. ..| .+..++.|+.+|++.|+++..........++|++||++||.
T Consensus 441 ~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 766 566 45667777777777777764322222223677777777774
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=5.5e-21 Score=166.08 Aligned_cols=275 Identities=20% Similarity=0.170 Sum_probs=160.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCC-CcccccCchhhcCCCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSD-SFFIGQIPSEILELSNLV 150 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~l~~l~~L~ 150 (362)
...+.|+|..|+++...+. +|+.+++|+.|||+.|.|+.+ -|++|.++++|..|.+.+ |.|+......|.++..|+
T Consensus 67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 4678888898888866666 888899999999999988876 688888888888877766 677654445677888888
Q ss_pred EEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc------------
Q 040025 151 SLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG------------ 218 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~------------ 218 (362)
.|.+.-|.+. ......+..+++|..|.+..|.+.... ...+..+.+++.+.+..|.+..
T Consensus 144 rLllNan~i~--------Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 144 RLLLNANHIN--------CIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HHhcChhhhc--------chhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCccccccccchhhhHHh
Confidence 8888777541 334566778888888888888876554 4467778888888887776321
Q ss_pred cCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEE--E-ccCCcCCcc-CCccccCCCCCCEEEccCCcCCCccc
Q 040025 219 RIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKEL--D-LSGNILSSK-LPASIGNLSSLKELDLSMNIFSGEVP 294 (362)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L--~-l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~ 294 (362)
..|..++......-..+.+..+-... +.-+. ..++.+ . .+.+...+. ....|..+++|++|+|++|+++++-+
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~-a~kf~--c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQED-ARKFL--CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccc-hhhhh--hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 11111111111111111111100000 00000 001111 0 111111112 12234555666666666666655555
Q ss_pred hhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 295 AVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 295 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
.+|.....++.|.|..|++.-.-...|.++..|++|+|.+|+++...|..|..+.+|.+|++-.|++
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 5555555566666666655433334455555566666666666555555555555566666655554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.8e-17 Score=160.26 Aligned_cols=227 Identities=28% Similarity=0.296 Sum_probs=161.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCC-----------------CCCCCEEECCCCc
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIAN-----------------LSRLSYLNLSDSF 134 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-----------------l~~L~~L~l~~~~ 134 (362)
.+++.|++.+|.++. +|. ..++|++|++++|.++. +|....+ .++|+.|++++|.
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~Lts--LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 293 (788)
T ss_pred cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCc--ccCcccccceeeccCCchhhhhhchhhcCEEECcCCc
Confidence 357788888887774 332 24678888888887763 3322110 1234455555555
Q ss_pred ccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc
Q 040025 135 FIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC 214 (362)
Q Consensus 135 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n 214 (362)
+. .+|. ..++|+.|++++|.+. .+|.. ..+|+.|++++|.++.. |. ...+|++|++++|
T Consensus 294 Lt-~LP~---~p~~L~~LdLS~N~L~---------~Lp~l---p~~L~~L~Ls~N~L~~L--P~---lp~~Lq~LdLS~N 352 (788)
T PRK15387 294 LT-SLPV---LPPGLQELSVSDNQLA---------SLPAL---PSELCKLWAYNNQLTSL--PT---LPSGLQELSVSDN 352 (788)
T ss_pred cc-cccc---cccccceeECCCCccc---------cCCCC---cccccccccccCccccc--cc---cccccceEecCCC
Confidence 43 3333 2367899999998763 33322 24688899999998753 32 1258999999999
Q ss_pred cCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccc
Q 040025 215 LVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVP 294 (362)
Q Consensus 215 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 294 (362)
.+. .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|
T Consensus 353 ~Ls-~LP~l---p~~L~~L~Ls~N~L~--~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP 418 (788)
T PRK15387 353 QLA-SLPTL---PSELYKLWAYNNRLT--SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLP 418 (788)
T ss_pred ccC-CCCCC---Ccccceehhhccccc--cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCC
Confidence 998 45542 357889999998653 35653 3579999999999984 5543 368999999999998 466
Q ss_pred hhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhh
Q 040025 295 AVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFI 345 (362)
Q Consensus 295 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 345 (362)
.. ..+|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+
T Consensus 419 ~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 53 357889999999998 789989999999999999999999877766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.7e-17 Score=161.09 Aligned_cols=224 Identities=24% Similarity=0.374 Sum_probs=172.8
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhc
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 177 (362)
.+...|+++++.++. +|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.+ ..+|..+.
T Consensus 178 ~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L---------tsLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLTT--IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL---------TSIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcCc--CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc---------ccCChhhh-
Confidence 467889999887764 666553 57999999999987 6776654 6899999999976 34454332
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCE
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKE 257 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~ 257 (362)
++|+.|++++|.+... |..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .+.|+.
T Consensus 241 -~~L~~L~Ls~N~L~~L--P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt--~LP~~l--p~sL~~ 308 (754)
T PRK15370 241 -DTIQEMELSINRITEL--PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR--TLPAHL--PSGITH 308 (754)
T ss_pred -ccccEEECcCCccCcC--ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc--cCcccc--hhhHHH
Confidence 4799999999998743 44443 58999999999988 5666553 58999999999653 356544 257999
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcC
Q 040025 258 LDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337 (362)
Q Consensus 258 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 337 (362)
|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+ .++|++|+|++|.+
T Consensus 309 L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 309 LNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred HHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence 9999999984 55443 3689999999999984 676553 79999999999988 577655 36899999999999
Q ss_pred CCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 338 SGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 338 ~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+ .+|..+. ..|+.|++++|.|+
T Consensus 380 t-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 380 T-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred C-CCCHhHH--HHHHHHhhccCCcc
Confidence 9 5676654 36899999999874
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-19 Score=172.78 Aligned_cols=267 Identities=30% Similarity=0.314 Sum_probs=204.0
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
+..+++++++.+.+.+.. . .+..+.+|+.+....|.+. .+|..+..+.+|+.|.+..|.+. -+|.....++.|+
T Consensus 240 p~nl~~~dis~n~l~~lp-~--wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-E--WIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR 313 (1081)
T ss_pred cccceeeecchhhhhcch-H--HHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence 568899999999988554 5 7999999999999999985 37888999999999999999975 6888888899999
Q ss_pred EEEcCCCCCCCCcccccCCCchhhhh-cCC-CCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCC
Q 040025 151 SLDLSGNAYPGGILELRKSSLTNLAE-KLT-NLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLL 228 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~~~~~-~l~-~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 228 (362)
+|+|..|++ ..+|+.+. ... .|+.|+.+.+++.... ...=..++.|+.|.+.+|.+++.....+.+++
T Consensus 314 tLdL~~N~L---------~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 314 TLDLQSNNL---------PSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred eeeehhccc---------cccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 999999987 44554322 222 2566666666665443 22234467899999999999888777888899
Q ss_pred CCCEEeCCCCCCCccccCc-ccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEe
Q 040025 229 KLIHLDLSQNQLLSGEIPA-SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307 (362)
Q Consensus 229 ~L~~L~l~~n~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 307 (362)
+|+.|+|++|.+. .+|. .+.+++.|+.|+++||.++ .+|..+.+++.|++|...+|.+. .+| .+..++.|+.+|
T Consensus 384 hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 9999999999553 3554 3578889999999999998 67788889999999999999888 677 677889999999
Q ss_pred cccCcccccC-CccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCC
Q 040025 308 LVENNFSGDL-PAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSEN 359 (362)
Q Consensus 308 L~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 359 (362)
++.|.++... |... .-++|++||+++|.-.-.--..+..+..+..+++.-|
T Consensus 459 lS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9999887433 3332 2378999999999743222334555555555555443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.3e-19 Score=140.63 Aligned_cols=167 Identities=34% Similarity=0.544 Sum_probs=137.8
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
.+.++.+++.|.++.|.++. +|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|.+ ..+|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------~~lp 95 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------NILP 95 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------hcCc
Confidence 46677788888888888764 6778888889999999888875 7888888899999999888865 5677
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
..++.+|.|++||+..|++....+|..|..|..|+.|++++|.+. .+|..++++++|+.|.+..|+..+ +|..++.+
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpkeig~l 172 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDL 172 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHHHHHH
Confidence 778888888888888888888888888888889999999998887 677788899999999998887754 78888888
Q ss_pred CCCCEEEccCCcCCccCCccccC
Q 040025 253 GSLKELDLSGNILSSKLPASIGN 275 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l~~ 275 (362)
++|++|++.+|.++ .+|..+++
T Consensus 173 t~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 173 TRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHhcccceee-ecChhhhh
Confidence 99999999999887 55555543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.3e-18 Score=132.89 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=97.7
Q ss_pred CCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCC
Q 040025 119 IANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPH 198 (362)
Q Consensus 119 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 198 (362)
+-.+.+.+.|.+++|.++ .+|..+..+.+|+.|++++|++ ..+|..+.++++|++|+++.|++.. +|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi---------e~lp~~issl~klr~lnvgmnrl~~--lpr 96 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI---------EELPTSISSLPKLRILNVGMNRLNI--LPR 96 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh---------hhcChhhhhchhhhheecchhhhhc--Ccc
Confidence 445677788888888875 6677788888888888888876 5666666666666666666666532 256
Q ss_pred CcCCCCCCcEEEeecccCC-ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCC
Q 040025 199 NLGNLSSLRFLSLNNCLVR-GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277 (362)
Q Consensus 199 ~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (362)
.|+.+|.|+.|++.+|.+. ..+|..|..+..|+.|+++.|+. ..+|..++++++|+.|.+..|.+. ..|..++.++
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt 173 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT 173 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence 6666666666666666553 23444455555555555555543 234555555556666655555554 4555555555
Q ss_pred CCCEEEccCCcCC
Q 040025 278 SLKELDLSMNIFS 290 (362)
Q Consensus 278 ~L~~L~L~~n~l~ 290 (362)
.|++|.+.+|.++
T Consensus 174 ~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 174 RLRELHIQGNRLT 186 (264)
T ss_pred HHHHHhcccceee
Confidence 5555555555555
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=5.6e-18 Score=147.52 Aligned_cols=251 Identities=24% Similarity=0.248 Sum_probs=185.8
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCC-CCCCCCcccccCCCch-hhhh
Q 040025 99 HLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSG-NAYPGGILELRKSSLT-NLAE 176 (362)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~~~ 176 (362)
.-..++|..|.|+.. -+.+|+.+++||.|+|++|.|+.+-|+.|..+++|..|.+.+ |+| ..+| ..+.
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI---------~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI---------TDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch---------hhhhhhHhh
Confidence 556789999999875 566799999999999999999999999999999998888877 765 4455 3577
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCcc-----------cc
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSG-----------EI 245 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------~l 245 (362)
.+..|+.|.+.-|.+.-.. .+.+..++++..|.+.+|.+.......+..+..++.+.+..|..... ..
T Consensus 138 gL~slqrLllNan~i~Cir-~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIR-QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchh-HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 8899999999999887766 77889999999999999988744444788888899998887752210 11
Q ss_pred CcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE--Ec-cCCcCCCccch-hhhCCCCCCEEecccCcccccCCccc
Q 040025 246 PASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL--DL-SMNIFSGEVPA-VIGNLSSLKALTLVENNFSGDLPAFI 321 (362)
Q Consensus 246 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L-~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l 321 (362)
|..++.........+.+..+...-+..|.. .++.+ .+ +.+...++.|. .|..+++|+.|+|++|.+++.-+.+|
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 222233333333334444433222222221 12222 11 22223334453 47889999999999999998889999
Q ss_pred cCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 322 GNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 322 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
.+...+++|.|..|++...--..|..+..|++|+|++|+||
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 99999999999999998655566888999999999999985
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=134.34 Aligned_cols=153 Identities=28% Similarity=0.445 Sum_probs=118.7
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCC----ccccceEecCC--C--CcEEE
Q 040025 5 VLPICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDC----CSWDGVECNEN--N--GHVFK 76 (362)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----c~~~~v~c~~~--~--~~v~~ 76 (362)
....+.+.|..||..+|..+..+ ...+|.. + .| |.|.||.|... . ..|+.
T Consensus 365 ~~~~t~~~~~~aL~~~k~~~~~~------------------~~~~W~g---~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~ 422 (623)
T PLN03150 365 AESKTLLEEVSALQTLKSSLGLP------------------LRFGWNG---D-PCVPQQHPWSGADCQFDSTKGKWFIDG 422 (623)
T ss_pred cccccCchHHHHHHHHHHhcCCc------------------ccCCCCC---C-CCCCcccccccceeeccCCCCceEEEE
Confidence 34566788999999999987532 1237865 1 22 27999999532 1 25899
Q ss_pred EEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCC
Q 040025 77 LDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSG 156 (362)
Q Consensus 77 L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~ 156 (362)
|+|+++.+.|..|. .+..+++|+.|+|++|.+.+. +|..++.+++|+.|++++|.+.+.+|..++.+++|++|++++
T Consensus 423 L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 423 LGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 99999999998888 899999999999999998876 888899999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCchhhhhcC-CCCCEEEcCCcC
Q 040025 157 NAYPGGILELRKSSLTNLAEKL-TNLETLNLGLVS 190 (362)
Q Consensus 157 n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 190 (362)
|.+. +.+|..+... .++..+++.+|.
T Consensus 500 N~l~--------g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLS--------GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred Cccc--------ccCChHHhhccccCceEEecCCc
Confidence 9753 4555555432 345566666554
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.4e-14 Score=125.68 Aligned_cols=213 Identities=25% Similarity=0.233 Sum_probs=137.2
Q ss_pred ccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccc--cCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 95 FNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIG--QIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 95 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
.++..|+.+.|.++.+...........|++++.|+|+.|-+.. .+......+|+|+.|+++.|.+.... ...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~-----~s~- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI-----SSN- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-----ccc-
Confidence 4677888888888776643222456678888888888876542 23344456788888888888653211 111
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
.-..+++|+.|.++.|.++...+...+..+|+|+.|++.+|...........-+..|+.|+|++|++.+...-...+.+
T Consensus 192 -~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 -TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred -chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 1125677888888888888766555667788888888888743222222334456788888888876653322445677
Q ss_pred CCCCEEEccCCcCCcc-CCcc-----ccCCCCCCEEEccCCcCCCccc--hhhhCCCCCCEEecccCcccc
Q 040025 253 GSLKELDLSGNILSSK-LPAS-----IGNLSSLKELDLSMNIFSGEVP--AVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~ 315 (362)
+.|..|+++.+.+... .|+. ...+++|++|++..|++. ..+ ..+..+++|+.|.+..|.+..
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 8888888888877642 2222 245678888888888775 222 334556677777777776653
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=2.3e-14 Score=123.41 Aligned_cols=240 Identities=26% Similarity=0.340 Sum_probs=133.3
Q ss_pred cccCCCCCEEEcCCCCCCCC---CCCccCCCCCCCCEEECCCCc---ccccCchh-------hcCCCCCCEEEcCCCCCC
Q 040025 94 LFNLIHLEWLNLAGNDFRYS---EIPPGIANLSRLSYLNLSDSF---FIGQIPSE-------ILELSNLVSLDLSGNAYP 160 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~---l~~~~p~~-------l~~l~~L~~L~l~~n~l~ 160 (362)
+..+..++.+++++|.+... .+...+.+.++|+..+++.-. ....+|+. +-.+++|++++||+|-++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 33445555566666555432 122334555566666665422 11233433 334567777777777664
Q ss_pred CCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC------------CCCCcCCCCCCcEEEeecccCCccC----Cccc
Q 040025 161 GGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP------------IPHNLGNLSSLRFLSLNNCLVRGRI----PSSL 224 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------l~~~~~~~~~L~~L~l~~n~l~~~~----~~~~ 224 (362)
...+ ..+-..+.++..|++|.+.+|.+.... ......+-++|+++..++|.+.... ...+
T Consensus 106 ~~g~----~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 106 PKGI----RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred ccch----HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 4322 334455666777777777777664322 1122344567777777777664221 1234
Q ss_pred cCCCCCCEEeCCCCCCCcccc---CcccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCccchh-
Q 040025 225 GNLLKLIHLDLSQNQLLSGEI---PASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGEVPAV- 296 (362)
Q Consensus 225 ~~~~~L~~L~l~~n~~~~~~l---~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~- 296 (362)
...+.|+.+.++.|.+....+ ...+..+++|++||+..|.++.. +...+..+++|+.|++++|.+......+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 455677777777775543222 23345677777777777766532 3344556677777777777666433222
Q ss_pred ---h-hCCCCCCEEecccCccccc----CCccccCCCCCCEEEccCCcC
Q 040025 297 ---I-GNLSSLKALTLVENNFSGD----LPAFIGNLRSLEILDLSLNKF 337 (362)
Q Consensus 297 ---l-~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l 337 (362)
+ ...|+|+.|.+.+|.++.. +.......+.|+.|+|++|++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 2356777777777766532 112233456777777777777
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=1.7e-13 Score=118.10 Aligned_cols=240 Identities=23% Similarity=0.278 Sum_probs=175.2
Q ss_pred ccCCCCCCCCEEECCCCccccc----CchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-------hhhhcCCCCCEEE
Q 040025 117 PGIANLSRLSYLNLSDSFFIGQ----IPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-------NLAEKLTNLETLN 185 (362)
Q Consensus 117 ~~l~~l~~L~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-------~~~~~l~~L~~L~ 185 (362)
+.+..+..+..|++++|.+... +...+...++|+..++++-..+. ....+| ..+..+++|++++
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR-----~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGR-----LKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCC-----cHHHHHHHHHHHHHHHhcCCceeEee
Confidence 3456788999999999998533 44556677899999998752211 012233 2345778999999
Q ss_pred cCCcCCCCCCC---CCCcCCCCCCcEEEeecccCCccCC-------------ccccCCCCCCEEeCCCCCCCccc---cC
Q 040025 186 LGLVSIFNTPI---PHNLGNLSSLRFLSLNNCLVRGRIP-------------SSLGNLLKLIHLDLSQNQLLSGE---IP 246 (362)
Q Consensus 186 l~~~~~~~~~l---~~~~~~~~~L~~L~l~~n~l~~~~~-------------~~~~~~~~L~~L~l~~n~~~~~~---l~ 246 (362)
|+.|-+....+ ..-+.++..|++|.|.+|.+..... .-...-++|+.+...+|....+. +.
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence 99999876652 1235678999999999998752211 12345678999999999654432 33
Q ss_pred cccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCcc----chhhhCCCCCCEEecccCcccccCC
Q 040025 247 ASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGEV----PAVIGNLSSLKALTLVENNFSGDLP 318 (362)
Q Consensus 247 ~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~ 318 (362)
..+...+.|+.+.+..|.+... ....+..+++|+.|+|.+|.++... ...+..+++|+.|++++|.+.....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 4566778999999999987532 3345678999999999999888443 3456678899999999998875443
Q ss_pred ccc-----cCCCCCCEEEccCCcCCCC----chhhhcCCCCCCEEeCCCCCC
Q 040025 319 AFI-----GNLRSLEILDLSLNKFSGE----LPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 319 ~~l-----~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 361 (362)
..+ ...++|++|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 322 3478999999999999853 444566789999999999987
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4e-13 Score=119.01 Aligned_cols=212 Identities=29% Similarity=0.313 Sum_probs=147.0
Q ss_pred CCCCCCCEEECCCCcccccCc--hhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCC
Q 040025 120 ANLSRLSYLNLSDSFFIGQIP--SEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIP 197 (362)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~ 197 (362)
.++++|+.+.|.++... ..+ .....|++++.|||+.|-+... ..+......+|+|+.|+++.|.+....-.
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw------~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNW------FPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhH------HHHHHHHHhcccchhcccccccccCCccc
Confidence 35788999999988753 333 3466789999999999855321 34556778899999999999988654423
Q ss_pred CCcCCCCCCcEEEeecccCCc-cCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCcc-CCccccC
Q 040025 198 HNLGNLSSLRFLSLNNCLVRG-RIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSK-LPASIGN 275 (362)
Q Consensus 198 ~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~ 275 (362)
..-..+++|+.|.++.|.++. .+......+|+|+.|++..|.... .-......+..|+.|+|++|++-.. .-...+.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccccccccccc
Confidence 333467899999999998862 222334568899999999884221 1112233467899999999987632 1244677
Q ss_pred CCCCCEEEccCCcCCCc-cchh-----hhCCCCCCEEecccCcccccCC--ccccCCCCCCEEEccCCcCCCC
Q 040025 276 LSSLKELDLSMNIFSGE-VPAV-----IGNLSSLKALTLVENNFSGDLP--AFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 276 l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~~~--~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
++.|+.|+++.+.++.. .|+. ....++|++|++..|++. ..+ ..+..+++|+.|.+..|.++.+
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 88999999998887743 2332 355788999999999885 222 2345567888888888877643
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=2.1e-11 Score=113.54 Aligned_cols=177 Identities=40% Similarity=0.560 Sum_probs=90.1
Q ss_pred CCCCCCCEEECCCCcccccCchhhcCCC-CCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCC
Q 040025 120 ANLSRLSYLNLSDSFFIGQIPSEILELS-NLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPH 198 (362)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 198 (362)
..++.++.|++.++.+. .++.....+. +|+.|++++|.+ ..++..+..+++|+.|+++.|.++... .
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i---------~~l~~~~~~l~~L~~L~l~~N~l~~l~--~ 180 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI---------ESLPSPLRNLPNLKNLDLSFNDLSDLP--K 180 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccch---------hhhhhhhhccccccccccCCchhhhhh--h
Confidence 33455556666555543 3444444442 566666665544 333344555566666666666554432 2
Q ss_pred CcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC
Q 040025 199 NLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS 278 (362)
Q Consensus 199 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 278 (362)
.....++|+.|++++|.+. .+|..+.....|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..++.+++
T Consensus 181 ~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~ 256 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceee-eccchhccccc
Confidence 2224555666666666555 44443334444556666655321 23444455555555555555544 22444555555
Q ss_pred CCEEEccCCcCCCccchhhhCCCCCCEEecccCccc
Q 040025 279 LKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 279 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
+++|++++|.++. ++. +....+++.|+++++.+.
T Consensus 257 l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 257 LETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cceeccccccccc-ccc-ccccCccCEEeccCcccc
Confidence 6666666665552 222 455555666666655554
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=3.2e-13 Score=123.28 Aligned_cols=193 Identities=32% Similarity=0.450 Sum_probs=134.3
Q ss_pred CCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccC
Q 040025 147 SNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGN 226 (362)
Q Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 226 (362)
.--...|++.|.+ ..+|..+..+..|+.+.+..|.+... +..+.++..|..++++.|++. .+|..++.
T Consensus 75 tdt~~aDlsrNR~---------~elp~~~~~f~~Le~liLy~n~~r~i--p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~ 142 (722)
T KOG0532|consen 75 TDTVFADLSRNRF---------SELPEEACAFVSLESLILYHNCIRTI--PEAICNLEALTFLDLSSNQLS-HLPDGLCD 142 (722)
T ss_pred cchhhhhcccccc---------ccCchHHHHHHHHHHHHHHhccceec--chhhhhhhHHHHhhhccchhh-cCChhhhc
Confidence 3344677777765 55666666666677777777766433 566777788888888888876 66666665
Q ss_pred CCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEE
Q 040025 227 LLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306 (362)
Q Consensus 227 ~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 306 (362)
+ -|+.|-+++|++. .+|..++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++ |..|
T Consensus 143 l-pLkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~l 216 (722)
T KOG0532|consen 143 L-PLKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRL 216 (722)
T ss_pred C-cceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeee
Confidence 5 3777777777553 46777777778888888888777 56666777788888888888877 6677666554 7788
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcC---CCCCCEEeCCCC
Q 040025 307 TLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN---LPSLEELDLSEN 359 (362)
Q Consensus 307 ~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~---~~~L~~L~l~~n 359 (362)
|+++|++. .+|..|.+++.|++|-|.+|.++ ..|..++- ..-.|+|+..-|
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888877 77777888888888888888887 45554432 233455555444
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=117.58 Aligned_cols=106 Identities=32% Similarity=0.585 Sum_probs=90.7
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccC
Q 040025 255 LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSL 334 (362)
Q Consensus 255 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~ 334 (362)
++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888888888888888888888999999999988888888888888999999999999888888888888999999999
Q ss_pred CcCCCCchhhhcCC-CCCCEEeCCCCC
Q 040025 335 NKFSGELPVFIGNL-PSLEELDLSENQ 360 (362)
Q Consensus 335 n~l~~~~~~~~~~~-~~L~~L~l~~n~ 360 (362)
|.+.|.+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 99888888887653 466778888775
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=2.3e-11 Score=113.36 Aligned_cols=200 Identities=40% Similarity=0.558 Sum_probs=146.4
Q ss_pred CEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCC-CCCEEEcCCcCCCCCCCCCCcCCCC
Q 040025 126 SYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLT-NLETLNLGLVSIFNTPIPHNLGNLS 204 (362)
Q Consensus 126 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~~~ 204 (362)
+.++...+.+.... ..+..++.++.|++.+|.+ ..++....... +|+.|+++.|.+... +..+..++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i---------~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~ 163 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNI---------TDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLP 163 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCccc---------ccCccccccchhhcccccccccchhhh--hhhhhccc
Confidence 36777777754333 3355667889999998876 55666666664 899999998888654 24577888
Q ss_pred CCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 040025 205 SLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284 (362)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 284 (362)
+|+.|++++|++. .++...+..+.|+.|++++|.+. .+|........|++|.+++|... ..+..+..+.++..+.+
T Consensus 164 ~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 164 NLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred cccccccCCchhh-hhhhhhhhhhhhhheeccCCccc--cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence 8999999988887 55555557888888999888653 35665555666888888888544 45556777888888888
Q ss_pred cCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhh
Q 040025 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVF 344 (362)
Q Consensus 285 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 344 (362)
.+|++. ..+..+..+++++.|++++|.+. .++. +....+++.|+++++.+....+..
T Consensus 240 ~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 240 SNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 888776 44666777888888888888887 4444 777888888888888887665544
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=7.5e-13 Score=120.92 Aligned_cols=175 Identities=29% Similarity=0.401 Sum_probs=105.2
Q ss_pred cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhh
Q 040025 96 NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLA 175 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 175 (362)
.+..-...|++.|.+.. +|..+..+-.|+.+.+..|.+. .+|..+..+..|++++++.|++ ..+|..+
T Consensus 73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql---------S~lp~~l 140 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL---------SHLPDGL 140 (722)
T ss_pred cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh---------hcCChhh
Confidence 34444556667676552 5666666666777777766653 6677777777777777777764 3444444
Q ss_pred hcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCC
Q 040025 176 EKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL 255 (362)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L 255 (362)
..++ |+.|-+++|+++.. |..++..++|..|+.+.|.+. .+|..++.+.+|+.|.+..|... .+|..+. .-.|
T Consensus 141 C~lp-Lkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~--~lp~El~-~LpL 213 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE--DLPEELC-SLPL 213 (722)
T ss_pred hcCc-ceeEEEecCccccC--CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh--hCCHHHh-CCce
Confidence 4443 66666666666543 444555666666666666655 45555666666666666666443 2455554 2245
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEEccCCcCC
Q 040025 256 KELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS 290 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 290 (362)
..||++.|++. .+|-.|.+|+.|++|-|.+|.+.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 56666666665 56666666666666666666665
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=5.3e-12 Score=107.04 Aligned_cols=127 Identities=35% Similarity=0.411 Sum_probs=55.2
Q ss_pred CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEe
Q 040025 228 LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307 (362)
Q Consensus 228 ~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 307 (362)
..|+.+|+++|.+. .+.++..-.|+++.|+++.|.+.. +. .+..+++|+.|||++|.++ .+..+-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh--hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34455555555321 233333334455555555555441 11 1444455555555555444 2222223344455555
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCCCC-chhhhcCCCCCCEEeCCCCCC
Q 040025 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE-LPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 308 L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l 361 (362)
|++|.+. ....+.++-+|..||+++|++... -...++++|-|+.+.|.+|||
T Consensus 359 La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 5555443 111233444455555555554421 112344455555555555554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=6.7e-11 Score=95.59 Aligned_cols=129 Identities=30% Similarity=0.315 Sum_probs=45.0
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCC-CCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIA-NLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
+.+...+++|+|.+|.++.. +.++ .+.+|+.|++++|.+.. + +.+..+++|++|++++|.+ ..+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I---------~~i~ 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRI---------SSIS 80 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS------------S-C
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCC---------Cccc
Confidence 44455677777777776632 2344 46778888888887753 3 3466777888888888865 3343
Q ss_pred hhh-hcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC---ccccCCCCCCEEeCC
Q 040025 173 NLA-EKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP---SSLGNLLKLIHLDLS 236 (362)
Q Consensus 173 ~~~-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 236 (362)
..+ ..+++|++|++++|.+....-...+..+++|+.|++.+|++..... ..+..+|+|+.||-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 333 3577888888888877665544566777888888888877653211 124556677776654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=9.7e-11 Score=94.66 Aligned_cols=107 Identities=38% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCCCcEEEeecccCCccCCcccc-CCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccc-cCCCCC
Q 040025 202 NLSSLRFLSLNNCLVRGRIPSSLG-NLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASI-GNLSSL 279 (362)
Q Consensus 202 ~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L 279 (362)
+..++++|++++|.+.. + +.++ .+.+|+.|++++|.+.+ + +.+..+++|+.|++++|.++. +.+.+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 33445555555555541 1 1233 34455555555554322 1 224444555555555555542 22222 234555
Q ss_pred CEEEccCCcCCCc-cchhhhCCCCCCEEecccCccc
Q 040025 280 KELDLSMNIFSGE-VPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 280 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
++|++++|+|... .-..+..+++|+.|++.+|++.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555554421 1123344455555555555544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=9.6e-11 Score=99.51 Aligned_cols=113 Identities=32% Similarity=0.388 Sum_probs=92.6
Q ss_pred cccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCcccc
Q 040025 243 GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIG 322 (362)
Q Consensus 243 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 322 (362)
|.....+.....|+.+|+++|.++ .+.+.+.-.|.++.|+++.|.+.. +. .+..+++|+.|+|++|.++ .+..+-.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHh
Confidence 444444556678999999999988 778888888999999999999883 33 3788999999999999988 4545556
Q ss_pred CCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 323 NLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 323 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
++.++++|.|+.|.+.+ ...+..+.+|..||+++|+|
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccch
Confidence 78899999999998873 35577889999999999986
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=3.2e-10 Score=113.52 Aligned_cols=62 Identities=34% Similarity=0.495 Sum_probs=33.3
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCC
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGN 157 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n 157 (362)
|..++.|+.||+++|.-.+ .+|..++.+-+||+|+++++.+. .+|..+.+++.|.+|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 4445555555555543222 25555555555555555555543 55555555555555555544
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.3e-12 Score=107.44 Aligned_cols=181 Identities=24% Similarity=0.277 Sum_probs=99.7
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcC
Q 040025 99 HLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKL 178 (362)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l 178 (362)
.|+++||+...++...+...+..|.+|+.|.+.++.+.+.+...+.+-.+|+.|+++.+. +++ ...+.-.+.++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s----G~t--~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS----GFT--ENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc----ccc--hhHHHHHHHhh
Confidence 466777776666544333445566777777777777666666666666777777777663 111 13334455666
Q ss_pred CCCCEEEcCCcCCCCCCCCCCcCC-CCCCcEEEeecccCC---ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCC
Q 040025 179 TNLETLNLGLVSIFNTPIPHNLGN-LSSLRFLSLNNCLVR---GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGS 254 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~~~l~~~~~~-~~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~ 254 (362)
..|+.|+++.|.++...+...+.+ -++|..|+++++.-. ..+......+++|..|||+.|..++......+.+++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 777777777666554332222222 246666666665311 1111123456666666666665555444445556666
Q ss_pred CCEEEccCCcCCccCCcc---ccCCCCCCEEEccCC
Q 040025 255 LKELDLSGNILSSKLPAS---IGNLSSLKELDLSMN 287 (362)
Q Consensus 255 L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~L~~n 287 (362)
|++|.++.|.. .+|+. +...|+|.+|+..++
T Consensus 340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66666666642 23332 234556666665443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.6e-12 Score=108.72 Aligned_cols=179 Identities=22% Similarity=0.220 Sum_probs=117.9
Q ss_pred CCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCcccc-CcccCCCCCCCE
Q 040025 179 TNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEI-PASIGNLGSLKE 257 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l-~~~l~~~~~L~~ 257 (362)
..||++|++...++...+-..++.|.+|+.|.+.++.+.+.+...+.+-.+|+.|+++.+..++..- .-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4588888888877766655667778888888888888887777777888888888888876554321 123467788888
Q ss_pred EEccCCcCCccCCcc-ccC-CCCCCEEEccCCc--CCC-ccchhhhCCCCCCEEecccC-cccccCCccccCCCCCCEEE
Q 040025 258 LDLSGNILSSKLPAS-IGN-LSSLKELDLSMNI--FSG-EVPAVIGNLSSLKALTLVEN-NFSGDLPAFIGNLRSLEILD 331 (362)
Q Consensus 258 L~l~~n~l~~~~~~~-l~~-l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~ 331 (362)
|++++|.+..+.... +.. -++|+.|+++++. +.. .+..-...+|+|..|+|++| .++...-..+-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888765433221 111 2567778887753 111 12222356788888888876 44444444556778888888
Q ss_pred ccCCcCCCCchhh---hcCCCCCCEEeCCCC
Q 040025 332 LSLNKFSGELPVF---IGNLPSLEELDLSEN 359 (362)
Q Consensus 332 L~~n~l~~~~~~~---~~~~~~L~~L~l~~n 359 (362)
++.|... +|.. +...|+|.+||+.++
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8888654 3443 455677888887765
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=1.4e-11 Score=108.78 Aligned_cols=283 Identities=19% Similarity=0.140 Sum_probs=150.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCC-CCCCCCCccCCCCCCCCEEECCCCc-ccccCch-hhcCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGND-FRYSEIPPGIANLSRLSYLNLSDSF-FIGQIPS-EILELSN 148 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~p~-~l~~l~~ 148 (362)
+.++.+++.|+.-.+..+.-....++|++++|.+.+|. +++......-..|++|++|++..|. ++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 67788888888765543333345678999999998884 3333222333468899999998854 3332222 2335889
Q ss_pred CCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCC-CCCCCcCCCCCCcEEEeecccC-CccC-Ccccc
Q 040025 149 LVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNT-PIPHNLGNLSSLRFLSLNNCLV-RGRI-PSSLG 225 (362)
Q Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~~ 225 (362)
|++|+++.++-. ....+......++.++.+.+.+|.-.+. .+...-..++-+..+++.+|.. ++.- ...-.
T Consensus 218 L~~lNlSwc~qi------~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQI------SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchh------hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 999999988531 1134455556666666665555432111 1111122334455555444432 2111 11113
Q ss_pred CCCCCCEEeCCCCCCCccccCccc-CCCCCCCEEEccCCc-CCccCCccc-cCCCCCCEEEccCCcCCCc--cchhhhCC
Q 040025 226 NLLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNI-LSSKLPASI-GNLSSLKELDLSMNIFSGE--VPAVIGNL 300 (362)
Q Consensus 226 ~~~~L~~L~l~~n~~~~~~l~~~l-~~~~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~l 300 (362)
.+..|+.|+.+++...+......+ .+..+|+.|.+.+|+ ++..-...+ .+++.|+.+++..+..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 355667777666644332222222 345667777777664 332222222 2456677777666543211 22222356
Q ss_pred CCCCEEecccCcc-cccC----CccccCCCCCCEEEccCCcC-CCCchhhhcCCCCCCEEeCCCCC
Q 040025 301 SSLKALTLVENNF-SGDL----PAFIGNLRSLEILDLSLNKF-SGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 301 ~~L~~L~L~~n~l-~~~~----~~~l~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
+.|+.|.+++|.. ++.. ...-.....|+.+.|+++.. ++.....+..+++|+.+++.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6677777776643 2221 11123455666677777653 33455556666677777666653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.4e-09 Score=72.35 Aligned_cols=61 Identities=41% Similarity=0.541 Sum_probs=37.5
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 301 SSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
|+|+.|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666644445566666666666666666655555666666666666666654
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1e-09 Score=93.18 Aligned_cols=230 Identities=19% Similarity=0.181 Sum_probs=147.5
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCC-CCCCCCEEECCCCccc--ccCchhhcCCCCCCEEEcCCCCCCCCcccccCCC
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIA-NLSRLSYLNLSDSFFI--GQIPSEILELSNLVSLDLSGNAYPGGILELRKSS 170 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (362)
+.....++.+.+.++.+..+.-...|+ .++.++.+++.+|.++ .++...+.++|.|++|+++.|++...+ +.
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-----~~ 115 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-----KS 115 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-----cc
Confidence 334445666777777665543333343 5788999999999876 245556778999999999999875432 22
Q ss_pred chhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCc--ccc-CCCCCCEEeCCCCCCCcc-ccC
Q 040025 171 LTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPS--SLG-NLLKLIHLDLSQNQLLSG-EIP 246 (362)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~-~~~~L~~L~l~~n~~~~~-~l~ 246 (362)
+| .-..+|++|-+.+..+........+..+|.+++|.++.|.+....-+ ... .-+.+++|.+..|..... ...
T Consensus 116 lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 116 LP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred Cc---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 22 23578999999999888777667778899999999999854311111 111 123455566555532111 011
Q ss_pred cccCCCCCCCEEEccCCcCCccC-CccccCCCCCCEEEccCCcCCCc-cchhhhCCCCCCEEecccCcccccCCc-----
Q 040025 247 ASIGNLGSLKELDLSGNILSSKL-PASIGNLSSLKELDLSMNIFSGE-VPAVIGNLSSLKALTLVENNFSGDLPA----- 319 (362)
Q Consensus 247 ~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~----- 319 (362)
..-..+|++..+-+..|.+.... .+....++.+-.|+|+.++|..- ..+++..++.|..|.++++.+.+.+..
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceE
Confidence 12234678888888888775432 23344567777888988888742 245677889999999999877654321
Q ss_pred -cccCCCCCCEEE
Q 040025 320 -FIGNLRSLEILD 331 (362)
Q Consensus 320 -~l~~~~~L~~L~ 331 (362)
.++.+++++.|+
T Consensus 273 llIaRL~~v~vLN 285 (418)
T KOG2982|consen 273 LLIARLTKVQVLN 285 (418)
T ss_pred EEEeeccceEEec
Confidence 234566666664
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.8e-09 Score=69.77 Aligned_cols=57 Identities=42% Similarity=0.562 Sum_probs=23.8
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccC
Q 040025 255 LKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVEN 311 (362)
Q Consensus 255 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 311 (362)
|++|++++|++....+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444444444444333334444444444444444444333333444444444444444
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=5.3e-10 Score=104.55 Aligned_cols=195 Identities=33% Similarity=0.309 Sum_probs=94.9
Q ss_pred CCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhh
Q 040025 97 LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAE 176 (362)
Q Consensus 97 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 176 (362)
+..++.+.+..|.+.. +...+..+++|+.|++.+|.+.+ +...+..+++|++|++++|.|.. +. .+.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~---------i~-~l~ 137 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITK---------LE-GLS 137 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccc---------cc-chh
Confidence 4444445555554432 22335556666666666666542 22224556666666666665422 11 133
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC-ccccCCCCCCEEeCCCCCCCccccCcccCCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL 255 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L 255 (362)
.++.|+.|++.+|.+.... .+..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+
T Consensus 138 ~l~~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l 210 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKL 210 (414)
T ss_pred hccchhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHH
Confidence 3444666666666665432 34446666666666666553322 1 3455666666666664322 2222333334
Q ss_pred CEEEccCCcCCccCCccccCCCC--CCEEEccCCcCCCccchhhhCCCCCCEEecccCccc
Q 040025 256 KELDLSGNILSSKLPASIGNLSS--LKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
..+++..|.++..-+ +..+.. |+.+++.+|.+. ..+..+..+..+..|++.+|.+.
T Consensus 211 ~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 211 VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 444555554442111 111222 555566665555 22233444555555555555544
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=7.6e-09 Score=103.85 Aligned_cols=156 Identities=31% Similarity=0.451 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
.+.+++|||++|.--+..|. .++.+-+|++|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~--~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPS--SIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred CcceEEEECCCCCccCcCCh--HHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 36789999999876678888 8999999999999999987 3899999999999999998775556677777799999
Q ss_pred EEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCc----EEEeecccCCccCCccccC
Q 040025 151 SLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLR----FLSLNNCLVRGRIPSSLGN 226 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~ 226 (362)
+|.+........ ...-..+..+.+|+.+....... .+...+..+..|. .+.+.++... ..+..+..
T Consensus 646 ~L~l~~s~~~~~------~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~ 715 (889)
T KOG4658|consen 646 VLRLPRSALSND------KLLLKELENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGS 715 (889)
T ss_pred EEEeeccccccc------hhhHHhhhcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccccc-eeeccccc
Confidence 999976532110 22223345555565555533222 1011222233222 2222222221 23334555
Q ss_pred CCCCCEEeCCCCCC
Q 040025 227 LLKLIHLDLSQNQL 240 (362)
Q Consensus 227 ~~~L~~L~l~~n~~ 240 (362)
+.+|+.|.+.++..
T Consensus 716 l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 716 LGNLEELSILDCGI 729 (889)
T ss_pred ccCcceEEEEcCCC
Confidence 66666666666643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=6.9e-09 Score=88.28 Aligned_cols=224 Identities=24% Similarity=0.203 Sum_probs=127.4
Q ss_pred CCCEEECCCCccc--ccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCc-
Q 040025 124 RLSYLNLSDSFFI--GQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNL- 200 (362)
Q Consensus 124 ~L~~L~l~~~~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~- 200 (362)
.++.+.+.++.+. |.....-..++.++.+|+.+|.++++ ..+...+.++|.|+.|+++.|.+...+ ..+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW------seI~~ile~lP~l~~LNls~N~L~s~I--~~lp 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW------SEIGAILEQLPALTTLNLSCNSLSSDI--KSLP 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH------HHHHHHHhcCccceEeeccCCcCCCcc--ccCc
Confidence 4445555555442 22222223467888888888877553 345566778888888888888876543 222
Q ss_pred CCCCCCcEEEeecccCCcc-CCccccCCCCCCEEeCCCCCCCccccC-cccC-CCCCCCEEEccCCcCCc--cCCccccC
Q 040025 201 GNLSSLRFLSLNNCLVRGR-IPSSLGNLLKLIHLDLSQNQLLSGEIP-ASIG-NLGSLKELDLSGNILSS--KLPASIGN 275 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~l~-~~l~-~~~~L~~L~l~~n~l~~--~~~~~l~~ 275 (362)
-...+|+.|-+.+.++.-. ....+..+|.++.|.++.|....-.+- .... --+.++.|++.+|.... ........
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI 197 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh
Confidence 3456788888887776422 223355667777777777632211110 0011 11345556665553321 11122234
Q ss_pred CCCCCEEEccCCcCCCccc-hhhhCCCCCCEEecccCcccccC-CccccCCCCCCEEEccCCcCCCCchh------hhcC
Q 040025 276 LSSLKELDLSMNIFSGEVP-AVIGNLSSLKALTLVENNFSGDL-PAFIGNLRSLEILDLSLNKFSGELPV------FIGN 347 (362)
Q Consensus 276 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~------~~~~ 347 (362)
+|++..+.+..|.+...-. .....+|.+..|+|+.+.+.... ...+.+++.|..|.++++.+.+.+-. .+++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 6777777777776653221 12234556667788877765321 23456778888888888877654322 1356
Q ss_pred CCCCCEEe
Q 040025 348 LPSLEELD 355 (362)
Q Consensus 348 ~~~L~~L~ 355 (362)
++++++|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 66776665
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=2.5e-09 Score=100.04 Aligned_cols=217 Identities=34% Similarity=0.425 Sum_probs=147.1
Q ss_pred CCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCC
Q 040025 120 ANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHN 199 (362)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~ 199 (362)
..+..++.+.+..|.+.. +-..+..+.+|+.|++.+|.+ ..+...+..+++|++|++++|.++... .
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i---------~~i~~~l~~~~~L~~L~ls~N~I~~i~---~ 135 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKI---------EKIENLLSSLVNLQVLDLSFNKITKLE---G 135 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccch---------hhcccchhhhhcchheecccccccccc---c
Confidence 456677777788877653 334477889999999999976 333333677899999999999997754 4
Q ss_pred cCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcc-cCCCCCCCEEEccCCcCCccCCccccCCCC
Q 040025 200 LGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPAS-IGNLGSLKELDLSGNILSSKLPASIGNLSS 278 (362)
Q Consensus 200 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 278 (362)
+..++.|+.|++++|.+... ..+..++.|+.+++++|.+.. +... ...+.+++.+++.+|.+.. ...+..+..
T Consensus 136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~ 209 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSIRE--IEGLDLLKK 209 (414)
T ss_pred hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCchhc--ccchHHHHH
Confidence 66677799999999988632 235558889999999996543 2221 4677888999999988762 223344445
Q ss_pred CCEEEccCCcCCCccchhhhCCCC--CCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeC
Q 040025 279 LKELDLSMNIFSGEVPAVIGNLSS--LKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDL 356 (362)
Q Consensus 279 L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 356 (362)
+..+++..|.++..-+ +..+.. |+.+++++|++. .++..+..+..+..|++.+|.+... ..+...+.+..+..
T Consensus 210 l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 210 LVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWL 284 (414)
T ss_pred HHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhcc
Confidence 5555777887763222 122233 888999999887 3334566778889999998887743 12333344444444
Q ss_pred CCCC
Q 040025 357 SENQ 360 (362)
Q Consensus 357 ~~n~ 360 (362)
.+|+
T Consensus 285 ~~~~ 288 (414)
T KOG0531|consen 285 NDNK 288 (414)
T ss_pred Ccch
Confidence 4444
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.53 E-value=9.6e-09 Score=86.32 Aligned_cols=192 Identities=23% Similarity=0.254 Sum_probs=101.9
Q ss_pred cccCCCCCEEEcCCCCCCCCC---CCccCCCCCCCCEEECCCCccc---ccCch-------hhcCCCCCCEEEcCCCCCC
Q 040025 94 LFNLIHLEWLNLAGNDFRYSE---IPPGIANLSRLSYLNLSDSFFI---GQIPS-------EILELSNLVSLDLSGNAYP 160 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~---~~~p~-------~l~~l~~L~~L~l~~n~l~ 160 (362)
+..+..+..++||+|.|.... +...+.+-.+|+..+++.-... ..++. .+-+||+|+..++++|.|+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788888999999876541 2234566678888888764321 22333 3456788888888888764
Q ss_pred CCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC---CC---------CCcCCCCCCcEEEeecccCCccCCc-----c
Q 040025 161 GGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP---IP---------HNLGNLSSLRFLSLNNCLVRGRIPS-----S 223 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~---------~~~~~~~~L~~L~l~~n~l~~~~~~-----~ 223 (362)
.... ..+-+.+.+-..|++|.+++|.+-... +. ....+-|.|+.+....|++. ..+. .
T Consensus 106 ~~~~----e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~ 180 (388)
T COG5238 106 SEFP----EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAAL 180 (388)
T ss_pred cccc----hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHH
Confidence 3211 334455667778888888887764332 01 11233456666666666553 1111 1
Q ss_pred ccCCCCCCEEeCCCCCCCccccC----cccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCC
Q 040025 224 LGNLLKLIHLDLSQNQLLSGEIP----ASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFS 290 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~l~----~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 290 (362)
+..-..|+.+.+..|.+....+. ..+..+.+|++|++..|.++-. ....+..++.|+.|.+.+|-++
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 11123555555555543321111 0112344555555555554421 1222334444555555555444
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.52 E-value=1.7e-07 Score=57.14 Aligned_cols=42 Identities=40% Similarity=0.908 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCccccceEec
Q 040025 11 DDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCSWDGVECN 68 (362)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~v~c~ 68 (362)
++|++||++||+++..++. ..+.+|.... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~---------------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS---------------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC----------------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC---------------cccccCCCcC-CCCCeeeccEEeC
Confidence 6799999999999986442 3789999831 2799999999994
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=2e-09 Score=101.59 Aligned_cols=175 Identities=32% Similarity=0.314 Sum_probs=114.4
Q ss_pred hhhcCCCCCEEEcCCcCCCCCCCCCCcCCC-CCCcEEEeecccCC----------ccCCccccCCCCCCEEeCCCCCCCc
Q 040025 174 LAEKLTNLETLNLGLVSIFNTPIPHNLGNL-SSLRFLSLNNCLVR----------GRIPSSLGNLLKLIHLDLSQNQLLS 242 (362)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~----------~~~~~~~~~~~~L~~L~l~~n~~~~ 242 (362)
.+..+..|++|.+.++.+... ..+..+ .+|++|.-.+ .+. |.+...+ ....|...+.++|...
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence 455677888888888877531 111111 2344432221 110 1111111 1235667777777543
Q ss_pred cccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchh-hhCCCCCCEEecccCcccccCCccc
Q 040025 243 GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAV-IGNLSSLKALTLVENNFSGDLPAFI 321 (362)
Q Consensus 243 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l 321 (362)
.+-.++.-++.++.|+++.|+++... .+..++.|++|||+.|.++ .+|.. ...+ .|..|+|++|.++ .+ ..+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gi 250 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGI 250 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhH
Confidence 24556777889999999999998543 6778999999999999988 45542 3344 4999999999886 32 236
Q ss_pred cCCCCCCEEEccCCcCCCC-chhhhcCCCCCCEEeCCCCCC
Q 040025 322 GNLRSLEILDLSLNKFSGE-LPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 322 ~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l 361 (362)
.++.+|+.||+++|-+.+- -..-++.+..|++|.|.|||+
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7889999999999987752 223356677889999999986
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=4.4e-08 Score=82.46 Aligned_cols=239 Identities=21% Similarity=0.184 Sum_probs=136.8
Q ss_pred CcEEEEEcCCCCCccccCC--ccccccCCCCCEEEcCCCCCCCC--C-------CCccCCCCCCCCEEECCCCcccccCc
Q 040025 72 GHVFKLDLSNSCLQGSINS--SSGLFNLIHLEWLNLAGNDFRYS--E-------IPPGIANLSRLSYLNLSDSFFIGQIP 140 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~-------~~~~l~~l~~L~~L~l~~~~l~~~~p 140 (362)
..++.++|+||.+...... ...+.+-.+|+...+++-..... . +...+.+||+|+.++++.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4577888888877532111 11355667777777775422111 1 12345678888888888887765555
Q ss_pred hh----hcCCCCCCEEEcCCCCCCCCcccccCCCch---------hhhhcCCCCCEEEcCCcCCCCCCCC---CCcCCCC
Q 040025 141 SE----ILELSNLVSLDLSGNAYPGGILELRKSSLT---------NLAEKLTNLETLNLGLVSIFNTPIP---HNLGNLS 204 (362)
Q Consensus 141 ~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~---------~~~~~l~~L~~L~l~~~~~~~~~l~---~~~~~~~ 204 (362)
.. ++.-..|.+|.+++|.++...- +.+. .-...-|.|+++....|++...... ..+..-.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG----~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAG----GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccch----hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 44 3455778888888886532110 1111 1233457788888888877544311 1122225
Q ss_pred CCcEEEeecccCCccCCc-----cccCCCCCCEEeCCCCCCCc---cccCcccCCCCCCCEEEccCCcCCccCCccc---
Q 040025 205 SLRFLSLNNCLVRGRIPS-----SLGNLLKLIHLDLSQNQLLS---GEIPASIGNLGSLKELDLSGNILSSKLPASI--- 273 (362)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~-----~~~~~~~L~~L~l~~n~~~~---~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l--- 273 (362)
+|+++.+..|.+...... .+..+.+|+.||+..|.... ..+...+...+.|+.|.+..|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 788888888877533111 23456778888888874321 1123344556668888888887664333222
Q ss_pred -c--CCCCCCEEEccCCcCCCccchh-----h--hCCCCCCEEecccCccc
Q 040025 274 -G--NLSSLKELDLSMNIFSGEVPAV-----I--GNLSSLKALTLVENNFS 314 (362)
Q Consensus 274 -~--~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~L~~n~l~ 314 (362)
. ..|+|..|.+.+|.+.+.+... + ..+|-|..|.+.+|++.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1 3467777777777655432111 1 34566666666677665
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=2.5e-09 Score=94.88 Aligned_cols=277 Identities=21% Similarity=0.130 Sum_probs=171.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCC-CCCCCCCCccCCCCCCCCEEECCCCc-cccc-CchhhcCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGN-DFRYSEIPPGIANLSRLSYLNLSDSF-FIGQ-IPSEILELSN 148 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~-~p~~l~~l~~ 148 (362)
+.++.|++.++...........-..++.|++|++..| .++...+......+++|++|+++.|. +.+. +-....++..
T Consensus 164 pnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 164 PNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred CchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh
Confidence 4677888877753222111123457899999999996 44443223344689999999999876 3332 2233455677
Q ss_pred CCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCc-CCCCCCCCCCcCCCCCCcEEEeecccCCccC--Ccccc
Q 040025 149 LVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLV-SIFNTPIPHNLGNLSSLRFLSLNNCLVRGRI--PSSLG 225 (362)
Q Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~ 225 (362)
++.+.+.+|. ......+...-..+..+..+++..| .+++..+...-..+.+|+.|..+++...+.. ..--.
T Consensus 244 l~~~~~kGC~------e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 244 LEKLSLKGCL------ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hhhhhhcccc------cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 8888777763 1111223333345555666665555 3555554444566788999999887543221 12234
Q ss_pred CCCCCCEEeCCCCCCCccccCccc-CCCCCCCEEEccCCcCCc--cCCccccCCCCCCEEEccCCcC-CCccchh----h
Q 040025 226 NLLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSS--KLPASIGNLSSLKELDLSMNIF-SGEVPAV----I 297 (362)
Q Consensus 226 ~~~~L~~L~l~~n~~~~~~l~~~l-~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~----l 297 (362)
+.++|+.|.++.|..++..-...+ .+++.|+.+++..+.... .+...-.+++.|+.|.++++.. ++..... -
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 678899999999876543222223 467889999998885432 2223334778999999998753 3221111 2
Q ss_pred hCCCCCCEEecccCcc-cccCCccccCCCCCCEEEccCCcCCC-C-chhhhcCCCCCCEE
Q 040025 298 GNLSSLKALTLVENNF-SGDLPAFIGNLRSLEILDLSLNKFSG-E-LPVFIGNLPSLEEL 354 (362)
Q Consensus 298 ~~l~~L~~L~L~~n~l-~~~~~~~l~~~~~L~~L~L~~n~l~~-~-~~~~~~~~~~L~~L 354 (362)
..+..|+.+.|+++.. ++...+.+..+++|+.+++-+|+-.. + +-..-.++|++++.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 3467889999999854 44556677888999999999987432 2 33333456766654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=5.3e-08 Score=92.22 Aligned_cols=179 Identities=30% Similarity=0.290 Sum_probs=120.8
Q ss_pred hhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCC-CCCCEEeCCCCCCC---------cc
Q 040025 174 LAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNL-LKLIHLDLSQNQLL---------SG 243 (362)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~---------~~ 243 (362)
.+.-+++++.+.+-...-.+..-|-.+..+.+|+.|.+.++.+.. . ..+..+ ..|+.|...+. .. .+
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~S-l~Al~~v~ascgg 155 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNS-LDALRHVFASCGG 155 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhcc
Confidence 344456666666654433332224456778899999999998763 1 112211 23444432221 10 01
Q ss_pred ccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccC
Q 040025 244 EIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGN 323 (362)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 323 (362)
.+...+ ...+|...+++.|.++ .+...+.-++.|+.|+|++|+++.. +.+..++.|++|+|+.|.+. .+|..--.
T Consensus 156 d~~ns~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~ 230 (1096)
T KOG1859|consen 156 DISNSP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMV 230 (1096)
T ss_pred ccccch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchh
Confidence 111111 1346888899999987 6777788889999999999999843 36788999999999999988 66653222
Q ss_pred CCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 324 LRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 324 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
-..|..|.+++|.++. ...+.++++|+.||+++|-|+
T Consensus 231 gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhh
Confidence 3359999999999984 356788999999999999763
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=3.6e-08 Score=74.47 Aligned_cols=108 Identities=27% Similarity=0.460 Sum_probs=60.2
Q ss_pred CcEEEeecccCCccCCcc---ccCCCCCCEEeCCCCCCCccccCccc-CCCCCCCEEEccCCcCCccCCccccCCCCCCE
Q 040025 206 LRFLSLNNCLVRGRIPSS---LGNLLKLIHLDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281 (362)
Q Consensus 206 L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~l~~n~~~~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 281 (362)
+..++++.|++. -+++. +.....|+..+|++|..- .+|..| ..++.++.|++++|.++ .+|+.++.++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 445556666543 22222 233344555666666432 244444 34456666666666666 45555666666777
Q ss_pred EEccCCcCCCccchhhhCCCCCCEEecccCcccccCCc
Q 040025 282 LDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA 319 (362)
Q Consensus 282 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 319 (362)
|+++.|.+. ..|..+..+.++..|+..+|.+. ++|.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 777666666 45555555666666666666554 4443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=1.5e-06 Score=85.41 Aligned_cols=149 Identities=22% Similarity=0.270 Sum_probs=95.7
Q ss_pred CCCcEEEeecccCC-ccCCcccc-CCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCE
Q 040025 204 SSLRFLSLNNCLVR-GRIPSSLG-NLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKE 281 (362)
Q Consensus 204 ~~L~~L~l~~n~l~-~~~~~~~~-~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 281 (362)
.+|++|++++.... ...+..++ .+|+|+.|.+.+-......+-....++|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57888888875532 12222233 4688888888876554444445556788888888888888743 56778888888
Q ss_pred EEccCCcCCC-ccchhhhCCCCCCEEecccCcccccC--C----ccccCCCCCCEEEccCCcCCCCchhhhc-CCCCCCE
Q 040025 282 LDLSMNIFSG-EVPAVIGNLSSLKALTLVENNFSGDL--P----AFIGNLRSLEILDLSLNKFSGELPVFIG-NLPSLEE 353 (362)
Q Consensus 282 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~ 353 (362)
|.+.+-.+.. ..-..+..+++|+.||+|........ . +.-..+|+|+.||.+++.+.+.+.+.+- .-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8888766653 22334667888888888876443211 1 1223478888888888888776554432 2344444
Q ss_pred E
Q 040025 354 L 354 (362)
Q Consensus 354 L 354 (362)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 3
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=3.6e-06 Score=51.40 Aligned_cols=37 Identities=43% Similarity=0.609 Sum_probs=23.9
Q ss_pred CCCCEEecccCcccccCCccccCCCCCCEEEccCCcCC
Q 040025 301 SSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 338 (362)
++|++|++++|.++ .+|..++.+++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 45555667777777777777766
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=9.8e-07 Score=86.68 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCCCEEEccCCcCCCccchhh-hCCCCCCEEe
Q 040025 276 LSSLKELDLSMNIFSGEVPAVI-GNLSSLKALT 307 (362)
Q Consensus 276 l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 307 (362)
+|+|+.||.+++.+.+.+-+.+ ..-++|+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5667777777666654433322 2334444443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=2.5e-07 Score=69.97 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=72.0
Q ss_pred EEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCC-CCCCCCEEECCCCcccccCchhhcCCCCCCEEE
Q 040025 75 FKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIA-NLSRLSYLNLSDSFFIGQIPSEILELSNLVSLD 153 (362)
Q Consensus 75 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~ 153 (362)
-.++|+.|.+.........+....+|+.++|++|.+.. +|..|. ..+.++.|++++|.++ .+|..+..++.|+.|+
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 34566666654222222245566677777888887764 555543 5667888888888875 6777788888888888
Q ss_pred cCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC
Q 040025 154 LSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP 195 (362)
Q Consensus 154 l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 195 (362)
+++|++ ...|..+..+.++-+|+..+|......
T Consensus 107 l~~N~l---------~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPL---------NAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCcc---------ccchHHHHHHHhHHHhcCCCCccccCc
Confidence 888876 455555655777777777776655443
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.01 E-value=5.3e-07 Score=86.23 Aligned_cols=114 Identities=29% Similarity=0.309 Sum_probs=55.1
Q ss_pred CCCCCEEEcCCCC-CCCCCCCccCCCCCCCCEEECCCC-cccccCc----hhhcCCCCCCEEEcCCCCCCCCcccccCCC
Q 040025 97 LIHLEWLNLAGND-FRYSEIPPGIANLSRLSYLNLSDS-FFIGQIP----SEILELSNLVSLDLSGNAYPGGILELRKSS 170 (362)
Q Consensus 97 l~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (362)
++.|+.+.+..+. +....+......+++|+.|+++++ ......+ .....+++|+.|+++.+.. +.+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~------isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL------VTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc------cCchh
Confidence 5666666666552 222112233445666666666552 1111111 1223345666666665541 11123
Q ss_pred chhhhhcCCCCCEEEcCCcC-CCCCCCCCCcCCCCCCcEEEeecccC
Q 040025 171 LTNLAEKLTNLETLNLGLVS-IFNTPIPHNLGNLSSLRFLSLNNCLV 216 (362)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~n~l 216 (362)
+......+++|++|.+..+. +++..+......+++|++|+++++..
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 33333446666666655555 45555444455566666666665543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=2.2e-05 Score=47.88 Aligned_cols=36 Identities=42% Similarity=0.648 Sum_probs=18.7
Q ss_pred CCCEEEccCCcCCCccchhhhCCCCCCEEecccCccc
Q 040025 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
+|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=5.2e-05 Score=61.51 Aligned_cols=85 Identities=25% Similarity=0.228 Sum_probs=50.1
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcC
Q 040025 99 HLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKL 178 (362)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l 178 (362)
+...+||++|.+. -.+.|..++.|.+|.+.+|.|+..-|.--..+++|+.|.+.+|.+..- +.+ ..+..+
T Consensus 43 ~~d~iDLtdNdl~---~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l------~dl-~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR---KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL------GDL-DPLASC 112 (233)
T ss_pred ccceecccccchh---hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh------hhc-chhccC
Confidence 4556777777664 234567777888888888877755554444567777777777764210 111 123345
Q ss_pred CCCCEEEcCCcCCCC
Q 040025 179 TNLETLNLGLVSIFN 193 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~ 193 (362)
|.|++|.+-+|.++.
T Consensus 113 p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEH 127 (233)
T ss_pred CccceeeecCCchhc
Confidence 555555555555443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=8.6e-05 Score=67.83 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=84.1
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCC
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGS 254 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~ 254 (362)
+..+.++++|++++|.++.. |. -.++|++|.+++|.-...+|..+ .++|+.|++++|..+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL--P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL--PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc--CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 45679999999999977654 31 22469999998866544666544 3689999999884332 233 45
Q ss_pred CCEEEccCCcCCccCCccccCC-CCCCEEEccCCc-CCC-ccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEE
Q 040025 255 LKELDLSGNILSSKLPASIGNL-SSLKELDLSMNI-FSG-EVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILD 331 (362)
Q Consensus 255 L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 331 (362)
|+.|++..+.... +..+ ++|+.|.+.+++ ... ..|.. -.++|+.|++++|... ..|..+. .+|+.|.
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 7778877655431 1122 356777775432 110 11111 1257888888887755 3343332 5788888
Q ss_pred ccCCc
Q 040025 332 LSLNK 336 (362)
Q Consensus 332 L~~n~ 336 (362)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87653
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=9.6e-05 Score=59.99 Aligned_cols=81 Identities=28% Similarity=0.291 Sum_probs=39.8
Q ss_pred CCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCC--ccCCccc
Q 040025 147 SNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVR--GRIPSSL 224 (362)
Q Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~--~~~~~~~ 224 (362)
.+...+|+++|.+.. + ..+..+++|..|.++.|.++... +..-..+++|+.|.+.+|.+. +.+ ..+
T Consensus 42 d~~d~iDLtdNdl~~---------l-~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl-~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---------L-DNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDL-DPL 109 (233)
T ss_pred cccceecccccchhh---------c-ccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhc-chh
Confidence 355566666665311 0 11234555666666666665554 443444455666666655543 111 113
Q ss_pred cCCCCCCEEeCCCCC
Q 040025 225 GNLLKLIHLDLSQNQ 239 (362)
Q Consensus 225 ~~~~~L~~L~l~~n~ 239 (362)
..+++|++|.+-+|+
T Consensus 110 a~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNP 124 (233)
T ss_pred ccCCccceeeecCCc
Confidence 445555555555553
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00021 Score=65.29 Aligned_cols=135 Identities=22% Similarity=0.321 Sum_probs=88.1
Q ss_pred cCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCC-cCCccCCccccCCCC
Q 040025 200 LGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGN-ILSSKLPASIGNLSS 278 (362)
Q Consensus 200 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~ 278 (362)
+..+.+++.|++++|.+. .+|. -.++|+.|.+++|..++ .+|..+ .++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 445689999999999776 5552 23579999999876653 456544 368999999998 443 344 45
Q ss_pred CCEEEccCCcCCC--ccchhhhCCCCCCEEecccCc-cc-ccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEE
Q 040025 279 LKELDLSMNIFSG--EVPAVIGNLSSLKALTLVENN-FS-GDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEEL 354 (362)
Q Consensus 279 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~-l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 354 (362)
|+.|++..+.... .+| ++|+.|.+.++. .. ..+|..+ .++|++|++++|... ..|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 7888887765431 233 357777775432 11 1122211 268999999999866 3444333 477888
Q ss_pred eCCCC
Q 040025 355 DLSEN 359 (362)
Q Consensus 355 ~l~~n 359 (362)
.++.|
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 77665
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.51 E-value=8.3e-06 Score=77.98 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=18.7
Q ss_pred CCEEEccCCcCC-CCchhhhcC-CCCCCEEeCCCCC
Q 040025 327 LEILDLSLNKFS-GELPVFIGN-LPSLEELDLSENQ 360 (362)
Q Consensus 327 L~~L~L~~n~l~-~~~~~~~~~-~~~L~~L~l~~n~ 360 (362)
++.|+++.+... ......... +..++.+++.+++
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 577777777633 222222222 5566666666654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=6.8e-05 Score=63.30 Aligned_cols=105 Identities=27% Similarity=0.249 Sum_probs=53.0
Q ss_pred ccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCC--cCCccCCccccCCCCCCEEEccCCcCCCc-cchhhhCC
Q 040025 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGN--ILSSKLPASIGNLSSLKELDLSMNIFSGE-VPAVIGNL 300 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l 300 (362)
.-.+..|+.+.+.+...++ -..+..+++|+.|.++.| ...+.++.....+|+|++|++++|++... --..+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3344555666665554332 123445666777777776 44443433344556777777777766520 01123345
Q ss_pred CCCCEEecccCcccccCC---ccccCCCCCCEEE
Q 040025 301 SSLKALTLVENNFSGDLP---AFIGNLRSLEILD 331 (362)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~ 331 (362)
.+|..|++.+|..+..-- ..+.-+++|++|+
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 556666666665443111 1233345555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.0013 Score=50.51 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=35.8
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCC
Q 040025 249 IGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLE 328 (362)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 328 (362)
|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......+..+++|+.+.+..+ +.......+..+ .|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444555555555543 3333334455555566666643 232222334445566666666543 332223344444 666
Q ss_pred EEEccCCcCCCCchhhhcCCCCC
Q 040025 329 ILDLSLNKFSGELPVFIGNLPSL 351 (362)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~~L 351 (362)
.+.+.. .+.......|.++++|
T Consensus 107 ~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT-B-SS----GGG-----
T ss_pred EEEECC-CccEECCccccccccC
Confidence 666554 3332333445555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00033 Score=59.20 Aligned_cols=61 Identities=28% Similarity=0.364 Sum_probs=29.5
Q ss_pred cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCC--cccccCchhhcCCCCCCEEEcCCCCC
Q 040025 96 NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDS--FFIGQIPSEILELSNLVSLDLSGNAY 159 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~l~~~~p~~l~~l~~L~~L~l~~n~l 159 (362)
.+..|+.+++.+..++. ...+..+++|+.|.++.| .+.+.++.-...+|+|++++++.|++
T Consensus 41 ~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 34445555554443331 123444556666666655 33333333334445566666655544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0036 Score=48.11 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=37.6
Q ss_pred cCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCC
Q 040025 200 LGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL 279 (362)
Q Consensus 200 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 279 (362)
+..+.+|+.+.+.. .+.......+..+++|+.+.+..+ ..... ...+..+++++.+.+.. .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccc-eeeeecccccccccccc-cccccccccccccccc
Confidence 44444555555442 222222333444555555555543 22111 12344454555555543 2222233344455556
Q ss_pred CEEEccCCcCCCccchhhhCCCCCCEEeccc
Q 040025 280 KELDLSMNIFSGEVPAVIGNLSSLKALTLVE 310 (362)
Q Consensus 280 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 310 (362)
+.+.+..+ +.......+..+ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66655443 332223334444 555555544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=5.4e-05 Score=64.43 Aligned_cols=104 Identities=23% Similarity=0.171 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCc--hhhcCCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIP--SEILELSNL 149 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p--~~l~~l~~L 149 (362)
..|++|++-||++.+. ....+|+.|+.|.|+-|.|+. ...+..|++|++|+|..|.|.. +. .-+.++|+|
T Consensus 19 ~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIES-LDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHH----HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchh
Confidence 3577888888888743 146689999999999998873 4568899999999999988752 22 236688999
Q ss_pred CEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEc
Q 040025 150 VSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNL 186 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l 186 (362)
++|.|..|+..+..-. .-=...+..+|+|+.||=
T Consensus 91 r~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccch---hHHHHHHHHcccchhccC
Confidence 9999999976432210 111245678899998873
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=3.3e-05 Score=65.68 Aligned_cols=100 Identities=25% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEE
Q 040025 179 TNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKEL 258 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L 258 (362)
.+.+.|+..+|.+++.. .+..|+.|+.|.|+-|.++..- .+..|++|++|+|..|.+.+-.-..-+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34444555555554432 3445556666666666554222 255556666666665544332112234555666666
Q ss_pred EccCCcCCccCCcc-----ccCCCCCCEEE
Q 040025 259 DLSGNILSSKLPAS-----IGNLSSLKELD 283 (362)
Q Consensus 259 ~l~~n~l~~~~~~~-----l~~l~~L~~L~ 283 (362)
.|..|.-.+..+.. +.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665544433222 23455555554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.46 E-value=7.6e-06 Score=77.13 Aligned_cols=194 Identities=26% Similarity=0.272 Sum_probs=93.1
Q ss_pred EEEEEcCCCCCccccC--CccccccCCCCCEEEcCCCCCCCCCCC---ccCCCC-CCCCEEECCCCccccc----Cchhh
Q 040025 74 VFKLDLSNSCLQGSIN--SSSGLFNLIHLEWLNLAGNDFRYSEIP---PGIANL-SRLSYLNLSDSFFIGQ----IPSEI 143 (362)
Q Consensus 74 v~~L~l~~~~l~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l-~~L~~L~l~~~~l~~~----~p~~l 143 (362)
+..+.+.+|.+..... ....+...++|+.|++++|.+.+.... ..+... ..|++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4456666666543111 111345566777777777766643211 111221 3455566666655432 44455
Q ss_pred cCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC---CCCCcCCCCC-CcEEEeecccCCcc
Q 040025 144 LELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP---IPHNLGNLSS-LRFLSLNNCLVRGR 219 (362)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~-L~~L~l~~n~l~~~ 219 (362)
.....++.++++.|.+...........++..+....++++|++..|.++... +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5566677777777765321111111111111223556666777666665332 1122233333 55566666655432
Q ss_pred ----CCccccCC-CCCCEEeCCCCCCCccc---cCcccCCCCCCCEEEccCCcCCc
Q 040025 220 ----IPSSLGNL-LKLIHLDLSQNQLLSGE---IPASIGNLGSLKELDLSGNILSS 267 (362)
Q Consensus 220 ----~~~~~~~~-~~L~~L~l~~n~~~~~~---l~~~l~~~~~L~~L~l~~n~l~~ 267 (362)
+...+..+ ..++.++++.|.+.... +...+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11223333 45566666666543321 23344455566666666666543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.23 E-value=2.4e-05 Score=73.78 Aligned_cols=90 Identities=30% Similarity=0.321 Sum_probs=52.3
Q ss_pred CCCCCCEEEccCCcCCcc----CCccccCCCC-CCEEEccCCcCCCcc----chhhhCC-CCCCEEecccCcccccCC--
Q 040025 251 NLGSLKELDLSGNILSSK----LPASIGNLSS-LKELDLSMNIFSGEV----PAVIGNL-SSLKALTLVENNFSGDLP-- 318 (362)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~~-- 318 (362)
...++++|++.+|.++.. ....+...+. +..|++..|.+.+.. ...+..+ +.++.++++.|.+++...
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 355677777777766532 1222334444 566777777766432 1223333 566777777777765433
Q ss_pred --ccccCCCCCCEEEccCCcCCCC
Q 040025 319 --AFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 319 --~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
..+..++.++++.+++|.+.+.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccH
Confidence 3344566777777777777653
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0056 Score=30.97 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=9.5
Q ss_pred CCEEEccCCcCCCCchhhh
Q 040025 327 LEILDLSLNKFSGELPVFI 345 (362)
Q Consensus 327 L~~L~L~~n~l~~~~~~~~ 345 (362)
|++|+|++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 455444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.0035 Score=51.17 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCc-cchhhh-CCCCCCEEecccC-cccccCCccccCCCCCCEE
Q 040025 254 SLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGE-VPAVIG-NLSSLKALTLVEN-NFSGDLPAFIGNLRSLEIL 330 (362)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L 330 (362)
.++.++.++..+..+.-+.+..++.++.|.+.++.--+. ....++ -.++|+.|++++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467777777777666666667777777777777642211 111111 2367788888876 5666666667777777777
Q ss_pred EccCCc
Q 040025 331 DLSLNK 336 (362)
Q Consensus 331 ~L~~n~ 336 (362)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.011 Score=29.92 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=11.0
Q ss_pred CCCEEECCCCcccccCchhhc
Q 040025 124 RLSYLNLSDSFFIGQIPSEIL 144 (362)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~l~ 144 (362)
+|++|++++|.++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666555 5555443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.60 E-value=0.05 Score=25.47 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=5.4
Q ss_pred CCCEEEccCCcCC
Q 040025 326 SLEILDLSLNKFS 338 (362)
Q Consensus 326 ~L~~L~L~~n~l~ 338 (362)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.0062 Score=49.75 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccC-CCCCCCEEEccCC-cCCccCCccccCCCCCCEE
Q 040025 205 SLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIG-NLGSLKELDLSGN-ILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~-~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 282 (362)
.++.++-++..+....-+.+..++.++.|.+.+|..+..--.+.++ -.++|+.|++++| .++...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4556666666655555455566666666666666544322111221 2456666666665 3444444445555666666
Q ss_pred EccC
Q 040025 283 DLSM 286 (362)
Q Consensus 283 ~L~~ 286 (362)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.09 E-value=0.061 Score=27.70 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcCCCC
Q 040025 325 RSLEILDLSLNKFSGE 340 (362)
Q Consensus 325 ~~L~~L~L~~n~l~~~ 340 (362)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3445555555554433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.11 E-value=0.0063 Score=50.85 Aligned_cols=88 Identities=24% Similarity=0.192 Sum_probs=64.9
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCC
Q 040025 249 IGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLE 328 (362)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 328 (362)
+..+...+.||++.|++. ..-..|..++.+..|+++.|++. ..|..+.....++.+++.+|... ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 345677888888888776 33445566677888888888776 56666666666777777777776 7788888888888
Q ss_pred EEEccCCcCCC
Q 040025 329 ILDLSLNKFSG 339 (362)
Q Consensus 329 ~L~L~~n~l~~ 339 (362)
++++.++.+..
T Consensus 115 ~~e~k~~~~~~ 125 (326)
T KOG0473|consen 115 KNEQKKTEFFR 125 (326)
T ss_pred hhhhccCcchH
Confidence 88888887653
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.73 E-value=1.1 Score=23.30 Aligned_cols=14 Identities=50% Similarity=0.551 Sum_probs=9.5
Q ss_pred CCCCEEEccCCcCC
Q 040025 325 RSLEILDLSLNKFS 338 (362)
Q Consensus 325 ~~L~~L~L~~n~l~ 338 (362)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45667777777666
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.73 E-value=1.1 Score=23.30 Aligned_cols=14 Identities=50% Similarity=0.551 Sum_probs=9.5
Q ss_pred CCCCEEEccCCcCC
Q 040025 325 RSLEILDLSLNKFS 338 (362)
Q Consensus 325 ~~L~~L~L~~n~l~ 338 (362)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45667777777666
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.34 E-value=0.017 Score=48.33 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=70.4
Q ss_pred cccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCC
Q 040025 223 SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSS 302 (362)
Q Consensus 223 ~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 302 (362)
.+..+...+.||++.|... .+-..+..++.+..|+++.|++. ..|+.+.....++.+++..|..+ ..|.++...++
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3566778888999988543 23445666778889999998887 67888888888888888888877 67888888999
Q ss_pred CCEEecccCccccc
Q 040025 303 LKALTLVENNFSGD 316 (362)
Q Consensus 303 L~~L~L~~n~l~~~ 316 (362)
++.+++.++.+...
T Consensus 113 ~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 113 PKKNEQKKTEFFRK 126 (326)
T ss_pred cchhhhccCcchHH
Confidence 99999998876543
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.18 E-value=6.7 Score=36.79 Aligned_cols=34 Identities=18% Similarity=-0.057 Sum_probs=18.9
Q ss_pred CCCCEEEccCCcCCccCCccc--cCCCCCCEEEccC
Q 040025 253 GSLKELDLSGNILSSKLPASI--GNLSSLKELDLSM 286 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~L~~ 286 (362)
.++++|....|.+.+...... ..-++.+.+++..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 347777777776665443332 2234566666644
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.45 E-value=1.7 Score=23.22 Aligned_cols=13 Identities=77% Similarity=1.099 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCCC
Q 040025 349 PSLEELDLSENQL 361 (362)
Q Consensus 349 ~~L~~L~l~~n~l 361 (362)
++|++|+|++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666665
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.94 E-value=2.5 Score=22.24 Aligned_cols=13 Identities=62% Similarity=0.945 Sum_probs=6.8
Q ss_pred CCCCEEeCCCCCC
Q 040025 349 PSLEELDLSENQL 361 (362)
Q Consensus 349 ~~L~~L~l~~n~l 361 (362)
.+|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.21 E-value=1.4 Score=41.83 Aligned_cols=89 Identities=21% Similarity=0.159 Sum_probs=42.8
Q ss_pred cCCCCCEEEcCCCCCCCCC-CCccCCCCCCCCEEECCCCcccccCchhhcC--CCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 96 NLIHLEWLNLAGNDFRYSE-IPPGIANLSRLSYLNLSDSFFIGQIPSEILE--LSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
+.+.+..+.|++|.+.... +...-...|+|..|+|++|...-.....+.+ ...|++|-+.+|++.... .....-+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf-~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF-SDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch-hhhHHHHH
Confidence 4566666777777654321 1112234567777777776211111122333 235667777777654321 11111222
Q ss_pred hhhhcCCCCCEEE
Q 040025 173 NLAEKLTNLETLN 185 (362)
Q Consensus 173 ~~~~~l~~L~~L~ 185 (362)
.....+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 3334566666654
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.88 E-value=2.8 Score=22.05 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=12.5
Q ss_pred CCCCEEEccCCcCCCCchh
Q 040025 325 RSLEILDLSLNKFSGELPV 343 (362)
Q Consensus 325 ~~L~~L~L~~n~l~~~~~~ 343 (362)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777888888877 4554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.02 E-value=2.3 Score=40.54 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=49.4
Q ss_pred CCCCCCEEEccCCcCCCc--cchhhhCCCCCCEEecccC--cccccCCcccc--CCCCCCEEEccCCcCCCCchhh---h
Q 040025 275 NLSSLKELDLSMNIFSGE--VPAVIGNLSSLKALTLVEN--NFSGDLPAFIG--NLRSLEILDLSLNKFSGELPVF---I 345 (362)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~---~ 345 (362)
+.+.+..++|++|++-.. +...-...|+|..|+|++| .+... ..+. +...|++|-+.||.+....-.. +
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 567788899999986632 1222245689999999999 33321 1122 3456889999999887653221 1
Q ss_pred ----cCCCCCCEEe
Q 040025 346 ----GNLPSLEELD 355 (362)
Q Consensus 346 ----~~~~~L~~L~ 355 (362)
..+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2457765554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.10 E-value=6.3 Score=20.43 Aligned_cols=13 Identities=54% Similarity=0.700 Sum_probs=8.7
Q ss_pred CCCCCEEeCCCCC
Q 040025 348 LPSLEELDLSENQ 360 (362)
Q Consensus 348 ~~~L~~L~l~~n~ 360 (362)
+++|+.|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777764
Done!