Query 040025
Match_columns 362
No_of_seqs 312 out of 3541
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-42 1.3E-46 308.7 20.9 296 8-339 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 3E-41 1E-45 337.8 23.0 323 6-361 6-355 (768)
3 4eco_A Uncharacterized protein 100.0 2.4E-40 8.3E-45 324.3 18.1 327 8-361 26-469 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.8E-37 6.2E-42 310.0 20.1 317 6-361 263-709 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.8E-36 6.2E-41 303.2 24.1 255 97-362 393-717 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 2.3E-35 7.8E-40 278.4 28.5 279 72-362 30-408 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 3.9E-33 1.3E-37 264.7 26.0 278 72-361 32-332 (477)
8 4fcg_A Uncharacterized protein 100.0 5.3E-34 1.8E-38 257.3 16.2 282 9-338 24-314 (328)
9 2id5_A Lingo-1, leucine rich r 100.0 6.3E-33 2.2E-37 263.3 23.3 265 71-341 55-336 (477)
10 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-34 1.1E-38 257.3 12.7 249 98-360 50-302 (313)
11 3t6q_A CD180 antigen; protein- 100.0 7.8E-32 2.7E-36 263.2 28.2 277 73-361 255-559 (606)
12 3o6n_A APL1; leucine-rich repe 100.0 3E-32 1E-36 252.0 22.7 269 72-361 45-351 (390)
13 3t6q_A CD180 antigen; protein- 100.0 4.8E-32 1.7E-36 264.6 23.3 259 73-342 302-564 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-31 6.2E-36 260.6 25.5 119 72-193 32-167 (606)
15 4eco_A Uncharacterized protein 100.0 2.7E-32 9.2E-37 267.3 19.6 272 71-361 205-525 (636)
16 3oja_B Anopheles plasmodium-re 100.0 7.9E-32 2.7E-36 262.4 22.6 268 73-361 52-357 (597)
17 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.7E-35 236.1 28.5 285 57-360 28-330 (330)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-31 6.5E-36 269.5 23.5 290 60-362 14-375 (844)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-32 2E-36 260.9 18.6 147 72-228 26-172 (549)
20 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-31 1.3E-35 258.3 24.4 86 72-160 80-166 (606)
21 3v47_A TOLL-like receptor 5B a 100.0 7.7E-31 2.6E-35 247.4 25.2 255 98-362 30-384 (455)
22 2ft3_A Biglycan; proteoglycan, 100.0 8.5E-31 2.9E-35 237.0 24.2 282 58-360 31-331 (332)
23 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-31 1.7E-35 252.8 23.9 281 71-362 44-481 (520)
24 1xku_A Decorin; proteoglycan, 100.0 2.4E-30 8.1E-35 233.9 25.7 267 73-362 32-306 (330)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-30 8.9E-35 250.2 24.7 108 72-192 52-159 (562)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-30 5.5E-35 249.3 22.9 271 72-362 21-434 (520)
27 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-30 1.2E-34 233.0 23.5 266 73-362 34-307 (332)
28 2z63_A TOLL-like receptor 4, v 100.0 4.2E-30 1.4E-34 249.0 25.3 114 249-362 417-531 (570)
29 4fmz_A Internalin; leucine ric 100.0 2.7E-29 9.1E-34 228.5 28.8 267 72-362 66-346 (347)
30 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-30 6.2E-35 262.3 23.2 275 72-362 48-394 (844)
31 3o6n_A APL1; leucine-rich repe 100.0 7.6E-30 2.6E-34 235.9 24.7 251 72-342 69-356 (390)
32 4ecn_A Leucine-rich repeat pro 100.0 2.1E-30 7.2E-35 259.2 22.4 267 71-358 447-785 (876)
33 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-30 2E-34 253.2 24.6 278 72-361 25-365 (680)
34 2z80_A TOLL-like receptor 2, v 100.0 2.6E-30 8.9E-35 235.8 19.5 279 56-362 26-314 (353)
35 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-29 1E-33 245.9 28.0 279 72-362 52-580 (635)
36 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-29 1.1E-33 247.9 27.7 286 74-361 250-596 (680)
37 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.2E-34 226.7 22.2 256 58-340 5-263 (306)
38 4fmz_A Internalin; leucine ric 100.0 1.1E-28 3.8E-33 224.4 28.5 258 72-362 44-324 (347)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-29 3.9E-34 245.6 23.0 127 75-218 34-160 (562)
40 4fcg_A Uncharacterized protein 100.0 9.5E-30 3.2E-34 229.5 19.2 235 96-361 79-313 (328)
41 2z66_A Variable lymphocyte rec 100.0 6.9E-29 2.3E-33 221.9 21.6 249 101-362 10-261 (306)
42 3zyj_A Leucine-rich repeat-con 100.0 4E-28 1.4E-32 227.8 26.6 244 76-338 47-292 (440)
43 3zyi_A Leucine-rich repeat-con 100.0 3.8E-28 1.3E-32 228.7 26.2 227 98-338 75-303 (452)
44 1o6v_A Internalin A; bacterial 100.0 1.2E-27 4.1E-32 226.3 26.6 267 72-362 68-366 (466)
45 3oja_B Anopheles plasmodium-re 100.0 3.3E-28 1.1E-32 236.8 21.8 253 95-362 48-337 (597)
46 1o6v_A Internalin A; bacterial 100.0 5.5E-27 1.9E-31 221.7 28.3 267 71-362 89-388 (466)
47 2z81_A CD282 antigen, TOLL-lik 100.0 4E-28 1.4E-32 234.2 20.7 183 59-267 3-210 (549)
48 1ozn_A Reticulon 4 receptor; N 100.0 6.1E-28 2.1E-32 213.5 18.4 269 75-360 14-285 (285)
49 3bz5_A Internalin-J, INLJ; leu 100.0 6E-27 2.1E-31 220.3 25.9 257 72-362 42-331 (457)
50 2z80_A TOLL-like receptor 2, v 100.0 6E-28 2.1E-32 220.1 16.7 255 72-342 52-318 (353)
51 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-26 4.2E-31 218.2 25.1 261 72-362 64-352 (457)
52 3zyi_A Leucine-rich repeat-con 100.0 8.4E-27 2.9E-31 219.6 24.0 228 123-361 75-302 (452)
53 1ozn_A Reticulon 4 receptor; N 100.0 9.4E-27 3.2E-31 205.9 22.9 226 101-340 14-240 (285)
54 3o53_A Protein LRIM1, AGAP0063 100.0 4E-29 1.4E-33 224.5 6.9 258 73-357 11-270 (317)
55 1wwl_A Monocyte differentiatio 100.0 4.8E-30 1.7E-34 230.0 0.9 246 96-362 41-309 (312)
56 3zyj_A Leucine-rich repeat-con 100.0 1.5E-26 5.1E-31 217.1 24.3 228 72-314 64-292 (440)
57 1wwl_A Monocyte differentiatio 99.9 4.5E-29 1.5E-33 223.7 3.1 270 47-340 21-311 (312)
58 2z63_A TOLL-like receptor 4, v 99.9 2.9E-26 1E-30 222.0 22.2 142 200-342 392-535 (570)
59 4g8a_A TOLL-like receptor 4; l 99.9 1E-25 3.5E-30 220.6 25.8 131 98-239 52-184 (635)
60 3oja_A Leucine-rich immune mol 99.9 3.2E-27 1.1E-31 224.1 12.0 238 95-357 31-270 (487)
61 3g06_A SSPH2 (leucine-rich rep 99.9 2E-25 6.9E-30 216.3 21.9 263 47-362 12-297 (622)
62 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-28 4.1E-33 232.7 -0.9 284 73-362 86-411 (461)
63 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-27 2.1E-31 210.2 10.0 238 100-362 12-250 (317)
64 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-28 1.9E-32 228.2 0.9 285 72-362 56-383 (461)
65 1jl5_A Outer protein YOPM; leu 99.9 1.4E-24 4.9E-29 204.0 24.0 247 73-362 132-409 (454)
66 2o6q_A Variable lymphocyte rec 99.9 1.5E-24 5.1E-29 190.2 22.4 216 57-290 2-218 (270)
67 3oja_A Leucine-rich immune mol 99.9 9.5E-26 3.2E-30 213.9 14.3 219 120-362 31-250 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 1.5E-24 5E-29 190.9 20.2 207 98-316 28-239 (276)
69 2z62_A TOLL-like receptor 4, v 99.9 1.4E-24 4.7E-29 191.0 19.4 225 103-342 12-241 (276)
70 2ast_B S-phase kinase-associat 99.9 5E-27 1.7E-31 212.5 3.5 270 58-347 35-315 (336)
71 2o6q_A Variable lymphocyte rec 99.9 5.5E-24 1.9E-28 186.6 22.7 203 124-340 17-220 (270)
72 1jl5_A Outer protein YOPM; leu 99.9 2.7E-23 9.2E-28 195.3 26.4 223 99-362 132-370 (454)
73 2ca6_A RAN GTPase-activating p 99.9 3.2E-26 1.1E-30 211.2 5.8 246 93-342 27-320 (386)
74 1p9a_G Platelet glycoprotein I 99.9 5.7E-24 2E-28 188.2 19.7 204 119-339 6-209 (290)
75 3rfs_A Internalin B, repeat mo 99.9 6.5E-24 2.2E-28 186.3 17.6 210 93-324 36-245 (272)
76 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 4.2E-30 207.4 5.3 243 115-362 24-316 (386)
77 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.2E-28 183.9 18.2 228 98-349 19-246 (272)
78 4glp_A Monocyte differentiatio 99.9 8.9E-24 3E-28 189.0 15.8 225 124-362 65-307 (310)
79 2ast_B S-phase kinase-associat 99.9 2.2E-25 7.5E-30 201.7 4.4 249 98-362 47-306 (336)
80 1p9a_G Platelet glycoprotein I 99.9 1.6E-22 5.6E-27 178.9 22.6 204 93-314 5-208 (290)
81 3goz_A Leucine-rich repeat-con 99.9 7.5E-25 2.6E-29 200.3 6.5 259 76-343 2-302 (362)
82 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.4E-28 186.9 10.4 231 96-339 62-308 (310)
83 1h6u_A Internalin H; cell adhe 99.9 2.8E-22 9.5E-27 179.0 17.7 195 119-339 37-231 (308)
84 3goz_A Leucine-rich repeat-con 99.9 3.9E-24 1.3E-28 195.5 5.3 85 74-159 24-121 (362)
85 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-21 6E-26 188.7 23.3 231 72-347 61-306 (622)
86 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 169.5 19.5 181 147-340 14-194 (251)
87 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.8E-26 174.5 19.2 195 94-315 37-231 (308)
88 2xwt_C Thyrotropin receptor; s 99.9 9.6E-22 3.3E-26 169.1 14.9 196 124-359 32-236 (239)
89 3m19_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 166.0 19.2 181 123-316 14-194 (251)
90 3ogk_B Coronatine-insensitive 99.9 8.9E-24 3.1E-28 205.5 1.7 288 72-362 164-526 (592)
91 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5.1E-26 167.9 15.1 178 98-290 31-218 (239)
92 3ogk_B Coronatine-insensitive 99.9 6.8E-23 2.3E-27 199.3 2.3 188 171-358 334-547 (592)
93 2p1m_B Transport inhibitor res 99.8 1.2E-22 4.1E-27 197.6 -0.5 286 72-361 130-518 (594)
94 3cvr_A Invasion plasmid antige 99.8 2.9E-20 9.8E-25 178.2 15.6 207 47-299 33-252 (571)
95 3cvr_A Invasion plasmid antige 99.8 8.9E-20 3E-24 174.8 17.6 186 99-323 60-252 (571)
96 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.4E-24 164.7 17.2 243 59-335 8-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 152.0 14.9 180 126-325 10-189 (208)
98 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 150.1 16.5 179 101-301 10-189 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-19 1.1E-23 151.3 15.8 155 182-341 14-169 (220)
100 1h6t_A Internalin B; cell adhe 99.8 2.6E-19 8.9E-24 158.4 15.5 187 128-340 29-215 (291)
101 2p1m_B Transport inhibitor res 99.8 5.7E-22 1.9E-26 192.8 -2.1 111 72-189 105-221 (594)
102 4ay9_X Follicle-stimulating ho 99.8 3.8E-19 1.3E-23 161.6 15.5 222 72-311 30-256 (350)
103 4ezg_A Putative uncharacterize 99.8 4.8E-19 1.6E-23 147.5 14.2 154 201-362 41-194 (197)
104 2v9t_B SLIT homolog 2 protein 99.8 8.8E-19 3E-23 148.5 15.8 153 182-339 14-166 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.6E-23 153.8 16.4 187 102-315 28-214 (291)
106 1m9s_A Internalin B; cell inva 99.8 5.4E-19 1.8E-23 171.0 14.8 192 98-316 21-212 (605)
107 1m9s_A Internalin B; cell inva 99.8 2.7E-18 9.1E-23 166.2 18.4 175 93-292 38-212 (605)
108 3e6j_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 145.8 16.8 155 181-342 21-176 (229)
109 2xot_A Amphoterin-induced prot 99.8 2.1E-18 7E-23 157.4 15.1 177 150-339 21-203 (361)
110 3e6j_A Variable lymphocyte rec 99.8 7.6E-18 2.6E-22 143.6 16.5 156 56-240 15-171 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-17 8.4E-22 139.5 16.9 157 150-318 14-170 (220)
112 2v9t_B SLIT homolog 2 protein 99.8 2.6E-17 8.9E-22 139.4 16.8 152 150-315 14-166 (220)
113 4ezg_A Putative uncharacterize 99.8 8.9E-18 3E-22 139.8 13.6 154 176-339 41-195 (197)
114 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.7E-22 152.6 13.6 176 126-315 21-203 (361)
115 4b8c_D Glucose-repressible alc 99.7 1.6E-19 5.5E-24 178.8 1.1 222 9-271 129-359 (727)
116 1dce_A Protein (RAB geranylger 99.7 3.2E-21 1.1E-25 185.5 -12.4 213 119-356 345-567 (567)
117 1dce_A Protein (RAB geranylger 99.7 2.4E-20 8.1E-25 179.4 -7.1 205 94-332 345-567 (567)
118 1xeu_A Internalin C; cellular 99.7 4.9E-18 1.7E-22 147.9 7.6 171 145-340 17-187 (263)
119 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.7E-22 144.1 10.8 171 121-316 17-187 (263)
120 2ell_A Acidic leucine-rich nuc 99.7 6.4E-17 2.2E-21 131.0 12.1 132 204-338 24-160 (168)
121 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.4E-21 132.2 13.4 132 207-342 11-143 (192)
122 2je0_A Acidic leucine-rich nuc 99.7 6.6E-17 2.3E-21 128.2 11.1 130 227-358 16-149 (149)
123 4b8c_D Glucose-repressible alc 99.7 9.4E-18 3.2E-22 166.2 5.1 142 139-294 216-358 (727)
124 2ell_A Acidic leucine-rich nuc 99.7 2.7E-16 9.1E-21 127.3 11.3 132 228-361 24-159 (168)
125 1w8a_A SLIT protein; signaling 99.7 6.9E-16 2.4E-20 127.7 13.5 132 182-318 11-143 (192)
126 2wfh_A SLIT homolog 2 protein 99.7 1.4E-15 4.8E-20 125.9 13.8 128 207-339 13-140 (193)
127 2je0_A Acidic leucine-rich nuc 99.7 4.4E-16 1.5E-20 123.4 9.7 128 204-334 17-149 (149)
128 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 121.7 14.9 133 206-342 9-141 (177)
129 3sb4_A Hypothetical leucine ri 99.6 8.7E-16 3E-20 138.2 9.4 242 97-356 48-328 (329)
130 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.9E-19 119.8 13.7 128 182-315 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 116.4 14.6 133 181-318 9-141 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.6 5.9E-15 2E-19 120.3 10.2 133 199-338 14-153 (176)
133 4fdw_A Leucine rich hypothetic 99.6 3.5E-13 1.2E-17 124.1 21.3 244 93-359 131-380 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.5 2.5E-14 8.7E-19 116.5 10.6 129 177-313 17-152 (176)
135 3sb4_A Hypothetical leucine ri 99.5 1E-14 3.5E-19 131.2 8.2 104 226-332 224-328 (329)
136 1ds9_A Outer arm dynein; leuci 99.5 3.5E-17 1.2E-21 136.3 -7.8 136 175-317 14-156 (198)
137 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 111.9 12.0 108 230-341 11-118 (170)
138 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 110.6 11.9 107 230-340 14-120 (174)
139 4fdw_A Leucine rich hypothetic 99.5 4.5E-12 1.5E-16 116.7 20.4 243 94-361 109-357 (401)
140 1ds9_A Outer arm dynein; leuci 99.5 4.4E-16 1.5E-20 129.6 -6.5 141 144-293 15-156 (198)
141 3un9_A NLR family member X1; l 99.5 6.7E-15 2.3E-19 134.3 0.3 184 178-361 71-282 (372)
142 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 104.9 12.8 109 205-317 10-118 (170)
143 2r9u_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 103.1 12.7 107 206-316 14-120 (174)
144 3un9_A NLR family member X1; l 99.4 1.9E-14 6.7E-19 131.2 -3.2 190 146-339 71-284 (372)
145 2ifg_A High affinity nerve gro 99.3 1.5E-11 5E-16 111.3 11.4 105 232-340 12-118 (347)
146 2ifg_A High affinity nerve gro 99.2 1.3E-10 4.4E-15 105.1 11.5 105 207-315 11-117 (347)
147 2ra8_A Uncharacterized protein 99.2 9E-11 3.1E-15 106.2 10.1 189 143-336 135-341 (362)
148 4fs7_A Uncharacterized protein 99.1 1.8E-09 6.3E-14 99.2 18.0 84 272-358 292-375 (394)
149 4fs7_A Uncharacterized protein 99.1 3E-09 1E-13 97.8 16.7 166 177-354 228-393 (394)
150 2ra8_A Uncharacterized protein 99.1 1.3E-10 4.3E-15 105.2 7.3 208 146-359 106-340 (362)
151 4gt6_A Cell surface protein; l 99.0 4.6E-08 1.6E-12 89.8 21.0 129 224-360 261-389 (394)
152 4gt6_A Cell surface protein; l 98.9 6E-08 2E-12 89.1 19.4 266 73-360 65-368 (394)
153 1io0_A Tropomodulin; LRR prote 98.8 1.5E-09 5.1E-14 88.8 3.6 86 275-360 63-162 (185)
154 4h09_A Hypothetical leucine ri 98.7 1.4E-06 4.8E-11 79.4 21.1 77 73-157 47-123 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.7E-13 83.6 2.2 39 121-159 34-77 (185)
156 3e4g_A ATP synthase subunit S, 98.6 2.5E-08 8.4E-13 79.8 3.6 95 245-339 53-154 (176)
157 3rw6_A Nuclear RNA export fact 98.6 6.6E-10 2.3E-14 95.6 -6.2 84 144-234 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.5 1.5E-07 5.1E-12 75.3 5.0 84 228-312 61-150 (176)
159 4h09_A Hypothetical leucine ri 98.4 4E-05 1.4E-09 69.7 20.4 246 94-359 42-343 (379)
160 3rw6_A Nuclear RNA export fact 98.4 4.8E-07 1.6E-11 77.8 6.8 39 252-290 169-209 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.8E-05 6.3E-10 64.3 5.1 85 226-310 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 7.3E-05 2.5E-09 60.8 4.3 112 249-360 37-168 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0016 5.3E-08 49.3 6.4 57 280-338 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.012 4.1E-07 44.4 6.9 57 232-290 12-68 (130)
165 2lz0_A Uncharacterized protein 46.6 25 0.00085 24.4 4.1 38 271-309 14-51 (100)
166 2lz0_A Uncharacterized protein 45.7 25 0.00085 24.5 4.0 48 287-335 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-42 Score=308.73 Aligned_cols=296 Identities=32% Similarity=0.540 Sum_probs=244.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCC
Q 040025 8 ICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCS--WDGVECNENN--GHVFKLDLSNSC 83 (362)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--~~~v~c~~~~--~~v~~L~l~~~~ 83 (362)
.|.++|+.||++||+++.. + ..+.+|.. +.+||. |.||.|.... ++|+.|+++++.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~----------------~~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~ 61 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-P----------------TTLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-C----------------GGGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHhcCC-c----------------ccccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCC
Confidence 5999999999999999853 2 14788987 678998 9999997654 799999999999
Q ss_pred Ccc--ccCCccccccCCCCCEEEcCC-CCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCC
Q 040025 84 LQG--SINSSSGLFNLIHLEWLNLAG-NDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYP 160 (362)
Q Consensus 84 l~~--~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~ 160 (362)
+.+ ..|. .+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus 62 l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 138 (313)
T 1ogq_A 62 LPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138 (313)
T ss_dssp CSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence 998 7777 899999999999995 888776 8888999999999999999998899999999999999999999642
Q ss_pred CCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCC-CCcEEEeecccCCccCCccccCCCCCCEEeCCCCC
Q 040025 161 GGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLS-SLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQ 239 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 239 (362)
+.+|..+..+++|++|++++|.+++.. +..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.
T Consensus 139 --------~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 139 --------GTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp --------SCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred --------CcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 356677788888888888888887655 77777777 888888888888878888787776 8888888884
Q ss_pred CCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCc
Q 040025 240 LLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA 319 (362)
Q Consensus 240 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 319 (362)
+ ++..|..+..+++|+.|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++|+.|++++|.++|.+|.
T Consensus 209 l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 209 L-EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp E-EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred c-cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 3 445677777888888888888888765555 67778888888888888877888888888888888888888887777
Q ss_pred cccCCCCCCEEEccCCc-CCC
Q 040025 320 FIGNLRSLEILDLSLNK-FSG 339 (362)
Q Consensus 320 ~l~~~~~L~~L~L~~n~-l~~ 339 (362)
. ..+++|+.|++++|. +.|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 5 677888888888886 444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-41 Score=337.75 Aligned_cols=323 Identities=31% Similarity=0.433 Sum_probs=225.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCc
Q 040025 6 LPICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCSWDGVECNENNGHVFKLDLSNSCLQ 85 (362)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~ 85 (362)
.+++.++|++||++||+++. ++ ..+++|.. +.+||.|.||+|+ .++|+.|+++++++.
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~----------------~~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~ 63 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DK----------------NLLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLN 63 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CT----------------TSSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCC
T ss_pred cccCCHHHHHHHHHHHhhCC-Cc----------------ccccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcC
Confidence 44557889999999999986 22 15789986 6799999999998 589999999999998
Q ss_pred cc---cCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCch--hhcCCCCCCEEEcCCCCCC
Q 040025 86 GS---INSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPS--EILELSNLVSLDLSGNAYP 160 (362)
Q Consensus 86 ~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~--~l~~l~~L~~L~l~~n~l~ 160 (362)
|. +++ .+.++++|+.++++.+.+.. ++..++++++|++|++++|.+.+.+|. .++.+++|++|++++|.+.
T Consensus 64 g~~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 139 (768)
T 3rgz_A 64 VGFSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139 (768)
T ss_dssp EEHHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE
T ss_pred CccCccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC
Confidence 86 554 45555555555555554321 334455555555555555555555555 5555555555555555432
Q ss_pred CCccc-------------cc----CCCchhh---hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccC
Q 040025 161 GGILE-------------LR----KSSLTNL---AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRI 220 (362)
Q Consensus 161 ~~~~~-------------~~----~~~~~~~---~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~ 220 (362)
+.... +. .+..+.. +..+++|++|++++|.+++.. .+..+++|++|++++|.+.+..
T Consensus 140 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~ 216 (768)
T 3rgz_A 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGI 216 (768)
T ss_dssp CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC---BCTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC---CcccCCcCCEEECcCCcCCCCC
Confidence 11000 00 0112222 456667777777777665533 2366777888888888777666
Q ss_pred CccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCC
Q 040025 221 PSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNL 300 (362)
Q Consensus 221 ~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 300 (362)
|. +.++++|++|++++|.+ ++.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+...
T Consensus 217 ~~-l~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 217 PF-LGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp CB-CTTCCSCCEEECCSSCC-CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred cc-cccCCCCCEEECcCCcC-CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh
Confidence 65 77788888888888743 4456777777888888888888877666654 67788888888888877777776654
Q ss_pred -CCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhh-hcCCCCCCEEeCCCCCC
Q 040025 301 -SSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVF-IGNLPSLEELDLSENQL 361 (362)
Q Consensus 301 -~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l 361 (362)
++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|.. +..+++|++|++++|.+
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88888888888888888888888888888888888888777765 78888888888888865
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-40 Score=324.34 Aligned_cols=327 Identities=19% Similarity=0.265 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCCC
Q 040025 8 ICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCSW---DGVECNENNGHVFKLDLSNSCL 84 (362)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~~---~~v~c~~~~~~v~~L~l~~~~l 84 (362)
+....|+.||.++++++..+ +|.+-.+.++...+|.. +.++|.| .||+|+.. ++|+.|+|+++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~--------~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK--------NWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGA 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG--------GCCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCC
T ss_pred hhHHHHHHHHHHHHHHcCCC--------CcccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCccc
Confidence 34557999999999997643 12222344556679997 7899999 99999765 8999999999999
Q ss_pred ccccCCccccccCCCCCEEEcCCCCC------CC----------------------------------------------
Q 040025 85 QGSINSSSGLFNLIHLEWLNLAGNDF------RY---------------------------------------------- 112 (362)
Q Consensus 85 ~~~~~~~~~~~~l~~L~~L~l~~~~~------~~---------------------------------------------- 112 (362)
.|.+|. .++++++|++|++++|.+ .+
T Consensus 94 ~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 94 SGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp EEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred CCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 999998 899999999999999854 01
Q ss_pred ------------------------CCCCccCCCCCCCCEEECCCCccccc-----------------Cchhhc--CCCCC
Q 040025 113 ------------------------SEIPPGIANLSRLSYLNLSDSFFIGQ-----------------IPSEIL--ELSNL 149 (362)
Q Consensus 113 ------------------------~~~~~~l~~l~~L~~L~l~~~~l~~~-----------------~p~~l~--~l~~L 149 (362)
..+|..++++++|++|++++|.+.+. +|..++ ++++|
T Consensus 172 ~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 01567788899999999999998875 888888 99999
Q ss_pred CEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcC-CCCCCCCCCcCCC------CCCcEEEeecccCCccCCc
Q 040025 150 VSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVS-IFNTPIPHNLGNL------SSLRFLSLNNCLVRGRIPS 222 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~~------~~L~~L~l~~n~l~~~~~~ 222 (362)
++|++++|.+. +.+|..+.++++|++|++++|. +++..+|..+..+ ++|++|++++|.+. .+|.
T Consensus 252 ~~L~L~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 252 TDVEVYNCPNL--------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CEEEEECCTTC--------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred CEEEecCCcCC--------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 99999998753 4555666677777777777776 6551224444443 66777777766666 5665
Q ss_pred --cccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC-CCEEEccCCcCCCccchhhhC
Q 040025 223 --SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS-LKELDLSMNIFSGEVPAVIGN 299 (362)
Q Consensus 223 --~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~ 299 (362)
.+..+++|+.|++++|. .++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..
T Consensus 323 ~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp HHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred hhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 66666667777776663 344555 5555666666666666665 55555666666 666666666666 45554443
Q ss_pred CC--CCCEEecccCcccccCCcccc-------CCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 300 LS--SLKALTLVENNFSGDLPAFIG-------NLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 300 l~--~L~~L~L~~n~l~~~~~~~l~-------~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
++ +|+.|++++|.+.+.+|..+. .+++|++|+|++|.+++..+..+..+++|++|++++|.|
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 32 566666666666655555554 445566666666665532222333455555555555554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-37 Score=310.04 Aligned_cols=317 Identities=19% Similarity=0.283 Sum_probs=231.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCC----CCCCCccc------------cceEecC
Q 040025 6 LPICHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAG----GNIDCCSW------------DGVECNE 69 (362)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~c~~------------~~v~c~~ 69 (362)
.+++..+|+.||++||+++..+ +|...+ ...++|.| .||.|+.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~---------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~ 321 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK---------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG---------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT
T ss_pred ccccchHHHHHHHHHHHHcCCC---------------------CCCcCCCcccccCCccccccccccccccCcCceEecC
Confidence 4456678999999999998521 465421 12233899 9999976
Q ss_pred CCCcEEEEEcCCCCCccccCCccccccCCCCCEEEc-CCCCCCCC-----------------------------------
Q 040025 70 NNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNL-AGNDFRYS----------------------------------- 113 (362)
Q Consensus 70 ~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~----------------------------------- 113 (362)
.++|+.|+|+++++.|.+|+ .++++++|++|+| ++|.+.+.
T Consensus 322 -~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 322 -NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp -TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred -CCCEEEEECccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 58999999999999999998 8999999999999 66533211
Q ss_pred ----------------------------------------CCCccCCCCCCCCEEECCCCcccc----------------
Q 040025 114 ----------------------------------------EIPPGIANLSRLSYLNLSDSFFIG---------------- 137 (362)
Q Consensus 114 ----------------------------------------~~~~~l~~l~~L~~L~l~~~~l~~---------------- 137 (362)
.+|..++++++|++|++++|.+.+
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 056778899999999999999988
Q ss_pred -cCchhhc--CCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcC-CCCCCCCCCc-------CCCCCC
Q 040025 138 -QIPSEIL--ELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVS-IFNTPIPHNL-------GNLSSL 206 (362)
Q Consensus 138 -~~p~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~-------~~~~~L 206 (362)
.+|..++ ++++|++|++++|.+. +.+|..+.++++|++|++++|. +++..+|..+ ..+++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNM--------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTC--------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccCChhhhhccCCCCCEEECcCCCCC--------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 3888887 9999999999999653 5667778888888888888887 7651224433 344588
Q ss_pred cEEEeecccCCccCCc--cccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC-CCEEE
Q 040025 207 RFLSLNNCLVRGRIPS--SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS-LKELD 283 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~ 283 (362)
++|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEE
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEE
Confidence 88888888887 7777 7888888888888888553 566 6777888888888888887 67777777777 88888
Q ss_pred ccCCcCCCccchhhhCCC--CCCEEecccCcccccCCccc---c--CCCCCCEEEccCCcCCCCchhhh-cCCCCCCEEe
Q 040025 284 LSMNIFSGEVPAVIGNLS--SLKALTLVENNFSGDLPAFI---G--NLRSLEILDLSLNKFSGELPVFI-GNLPSLEELD 355 (362)
Q Consensus 284 L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l---~--~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~ 355 (362)
+++|.++ .+|..+..++ +|+.|++++|.+.+.+|... . .+++|+.|+|++|.++ .+|..+ ..+++|+.|+
T Consensus 626 Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEE
T ss_pred CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEE
Confidence 8888877 6666555443 37777777777766554322 1 2235566666666665 333332 3555566666
Q ss_pred CCCCCC
Q 040025 356 LSENQL 361 (362)
Q Consensus 356 l~~n~l 361 (362)
|++|.|
T Consensus 704 Ls~N~L 709 (876)
T 4ecn_A 704 LSNNLM 709 (876)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 665554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-36 Score=303.21 Aligned_cols=255 Identities=39% Similarity=0.564 Sum_probs=212.6
Q ss_pred CCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhh
Q 040025 97 LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAE 176 (362)
Q Consensus 97 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 176 (362)
+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +.+|..+.
T Consensus 393 ~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~~~ 463 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE--------GEIPQELM 463 (768)
T ss_dssp TCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC--------SCCCGGGG
T ss_pred cCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc--------CcCCHHHc
Confidence 45566666666655544 5666777777777777777777777777777777777777777642 45667788
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLK 256 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~ 256 (362)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|. .++.+|..+..+++|+
T Consensus 464 ~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-FSGNIPAELGDCRSLI 541 (768)
T ss_dssp GCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGGCTTCC
T ss_pred CCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc-ccCcCCHHHcCCCCCC
Confidence 8889999999999888776 7888889999999999999988889889999999999999984 4667888888899999
Q ss_pred EEEccCCcCCccCCccc---------------------------------------------------------------
Q 040025 257 ELDLSGNILSSKLPASI--------------------------------------------------------------- 273 (362)
Q Consensus 257 ~L~l~~n~l~~~~~~~l--------------------------------------------------------------- 273 (362)
.|++++|.+.+.+|..+
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 99999998877666543
Q ss_pred -------cCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhc
Q 040025 274 -------GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIG 346 (362)
Q Consensus 274 -------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 346 (362)
..+++|+.|++++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 3356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCCCC
Q 040025 347 NLPSLEELDLSENQLS 362 (362)
Q Consensus 347 ~~~~L~~L~l~~n~ls 362 (362)
.+++|++|++++|+|+
T Consensus 702 ~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GCCCCSEEECCSSEEE
T ss_pred CCCCCCEEECcCCccc
Confidence 9999999999999874
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-35 Score=278.36 Aligned_cols=279 Identities=23% Similarity=0.228 Sum_probs=218.0
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|+++++.+.+..+. .+.++++|++|++++|.+.+...+..|.++++|++|++++|.+.+..|..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 5799999999999887676 78999999999999998765423567899999999999999998888888999999999
Q ss_pred EEcCCCCCCCCcccccCCCchh--hhhcCCCCCEEEcCCcCCCCCCCCCC-cCCCCCCcEEEeecccCCccCCccccCC-
Q 040025 152 LDLSGNAYPGGILELRKSSLTN--LAEKLTNLETLNLGLVSIFNTPIPHN-LGNLSSLRFLSLNNCLVRGRIPSSLGNL- 227 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~- 227 (362)
|++++|.+.+ .++. .+..+++|++|++++|.+++.. +.. +..+++|++|++++|.+.+..+..+..+
T Consensus 108 L~L~~n~l~~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 108 LTLTQCNLDG--------AVLSGNFFKPLTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp EECTTSCCBT--------HHHHSSTTTTCTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred EeCCCCCCCc--------cccCcccccCcccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 9999997632 1222 2556677777777777776654 333 6667777777777776655444333221
Q ss_pred --------------------------------------------------------------------------------
Q 040025 228 -------------------------------------------------------------------------------- 227 (362)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (362)
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence
Q ss_pred ----------------CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCC
Q 040025 228 ----------------LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSG 291 (362)
Q Consensus 228 ----------------~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 291 (362)
++|+.|++++|.+ .+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhccCcccccccccccCceEEEecCccc-cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 2455555555532 23346667788899999999999988888888889999999999999987
Q ss_pred ccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 292 EVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 292 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
..+..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 77888888999999999999998888888889999999999999999766667788999999999999874
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=264.73 Aligned_cols=278 Identities=24% Similarity=0.233 Sum_probs=197.7
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|+++++.+.+..+. .+.++++|++|+|++|.+... .+..|.++++|++|++++|.+.+..+..+..+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 4678888888888876665 788888888888888887764 5677888888888888888877555555778888888
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLI 231 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 231 (362)
|++++|.+. ...+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 109 L~Ls~n~i~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 109 LDISENKIV--------ILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp EECTTSCCC--------EECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred EECCCCccc--------cCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 888888652 122344566677777777777666554 55666666666666666666544444455555555
Q ss_pred EEeCCCCCCCc-----------------------cccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 040025 232 HLDLSQNQLLS-----------------------GEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288 (362)
Q Consensus 232 ~L~l~~n~~~~-----------------------~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 288 (362)
.|++++|.+.. +.++.......+|++|++++|.+++..+..+..+++|+.|+|++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 55555553321 1223223333356666666666664444567778888888888888
Q ss_pred CCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 289 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+++..+..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.+++..+..+..+++|++|++++|++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 8866666777888888888888888877788888888888888888888876666777888888888888876
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.3e-34 Score=257.30 Aligned_cols=282 Identities=21% Similarity=0.264 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCC-CCCCCCCccccceEecC--------CCCcEEEEEc
Q 040025 9 CHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKP-AGGNIDCCSWDGVECNE--------NNGHVFKLDL 79 (362)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~c~~~~v~c~~--------~~~~v~~L~l 79 (362)
+..+|+.||++||+.+..++. ....+|.. .....++|.|.|+.|.. ...+|+.|++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~---------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L 88 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRN---------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCT---------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred cCchHHHHHHHHHHhccCCch---------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEc
Confidence 456799999999998754432 23456731 00156899999999942 2356777888
Q ss_pred CCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCC
Q 040025 80 SNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAY 159 (362)
Q Consensus 80 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l 159 (362)
+++.+. .+|. .+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|++
T Consensus 89 ~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 89 RSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp ESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred cCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 777776 4444 5667777777777777776 26667777777777777777766 6677777777777777777643
Q ss_pred CCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCC
Q 040025 160 PGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQ 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 239 (362)
. +.+|..+.. . .+...+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 163 ~--------~~~p~~~~~------~----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 163 L--------TELPEPLAS------T----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp C--------CCCCSCSEE------E----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred c--------cccChhHhh------c----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 2 222221111 0 01223445777777777777776 666667777777777777775
Q ss_pred CCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCc
Q 040025 240 LLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA 319 (362)
Q Consensus 240 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 319 (362)
+. .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|.
T Consensus 218 l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 218 LS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 43 3555667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCCCCCEEEccCCcCC
Q 040025 320 FIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 320 ~l~~~~~L~~L~L~~n~l~ 338 (362)
.+..+++|+.+++..+.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 7777777777777665444
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=263.27 Aligned_cols=265 Identities=22% Similarity=0.230 Sum_probs=200.0
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
..+++.|+|++|.+.+..+. .+.++++|++|+|++|.+... .+..|.++++|++|++++|.+.+..|..+..+++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 35788999999988877666 788889999999998888753 344578888888888888888877777788888888
Q ss_pred EEEcCCCCCCCCcc------------cccC---CCc-hhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc
Q 040025 151 SLDLSGNAYPGGIL------------ELRK---SSL-TNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC 214 (362)
Q Consensus 151 ~L~l~~n~l~~~~~------------~~~~---~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n 214 (362)
+|++++|.+..... .+.. ..+ +..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCCEEEEECC
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccceeeCCCC
Confidence 88888886532100 0000 111 123445555555555555555443 445666666666666666
Q ss_pred cCCccCCccccCCCCCCEEeCCCCCCCccccC-cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCcc
Q 040025 215 LVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIP-ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEV 293 (362)
Q Consensus 215 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 293 (362)
...+.++.......+|+.|++++|.+. .+| ..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCC--SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred ccccccCcccccCccccEEECcCCccc--ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 655555555555567888888888553 344 46788999999999999999888888999999999999999999888
Q ss_pred chhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCc
Q 040025 294 PAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341 (362)
Q Consensus 294 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 341 (362)
|..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|.+....
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 899999999999999999999777777889999999999999988653
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.1e-34 Score=257.29 Aligned_cols=249 Identities=27% Similarity=0.467 Sum_probs=228.2
Q ss_pred CCCCEEEcCCCCCCC--CCCCccCCCCCCCCEEECCC-CcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhh
Q 040025 98 IHLEWLNLAGNDFRY--SEIPPGIANLSRLSYLNLSD-SFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNL 174 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 174 (362)
.++++|+++++.+.+ . +|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+. +.+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--------GAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE--------EECCGG
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC--------CcCCHH
Confidence 578999999999987 5 888999999999999995 8999999999999999999999999752 356778
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCC-CCCEEeCCCCCCCccccCcccCCCC
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLL-KLIHLDLSQNQLLSGEIPASIGNLG 253 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~l~~~l~~~~ 253 (362)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|. .++.+|..+..++
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLN 198 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCC
T ss_pred HhCCCCCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCc
Confidence 899999999999999998766 88899999999999999999999999999998 99999999995 4567788888887
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEcc
Q 040025 254 SLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLS 333 (362)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~ 333 (362)
|+.|++++|.+.+.++..+..+++|+.|++++|.+++..|. +..+++|++|++++|.+++.+|..+..+++|++|+|+
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 99999999999999999999999999999999999976665 7888999999999999999999999999999999999
Q ss_pred CCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 334 LNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 334 ~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
+|.+++.+|.. ..+++|+.+++++|+
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCcccccCCCC-ccccccChHHhcCCC
Confidence 99999998886 789999999999997
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.8e-32 Score=263.18 Aligned_cols=277 Identities=24% Similarity=0.275 Sum_probs=164.4
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
.++.++++++.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSN--TFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCTT--TTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCHH--HhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 688999999998876665 7888999999999999887 378888999999999999999887777788888999999
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC-CCCCcCCCCCCcEEEeecccCCccCCccccCCCCCC
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP-IPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLI 231 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 231 (362)
++++|.+.+.. .+..+..+++|++|++++|.+.+.. .+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 331 ~l~~n~~~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 331 SIKGNTKRLEL-------GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp ECCSCSSCCBC-------CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred ECCCCCccccc-------chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 99888653211 0112344555555555555544322 023344445555555555544444444444444444
Q ss_pred EEeCCCCCC------------------------CccccCcccCCCCCCCEEEccCCcCCcc---CCccccCCCCCCEEEc
Q 040025 232 HLDLSQNQL------------------------LSGEIPASIGNLGSLKELDLSGNILSSK---LPASIGNLSSLKELDL 284 (362)
Q Consensus 232 ~L~l~~n~~------------------------~~~~l~~~l~~~~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~L 284 (362)
.|++++|.. .++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 444444432 2222334444455555555555554431 1133444555555555
Q ss_pred cCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 285 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
++|.+++..|..+..+++|+.|++++|.+++..|..+..++.| +|++++|.+++..|..+..+++|++|++++|++
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 5555554444555555555555555555555555555555555 555555555555555555555555555555554
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=252.01 Aligned_cols=269 Identities=22% Similarity=0.158 Sum_probs=166.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.+++.++.+....+. .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTH--HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCchhhCChh--HhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4677888888877654433 467889999999999888754 4557888999999999999888777777888999999
Q ss_pred EEcCCCCCCCCcccccCCCchhh-hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNL-AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKL 230 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 230 (362)
|++++|.+ ..+|.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. +..+++|
T Consensus 122 L~L~~n~l---------~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L 188 (390)
T 3o6n_A 122 LVLERNDL---------SSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSL 188 (390)
T ss_dssp EECCSSCC---------CCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBCC---GGGCTTC
T ss_pred EECCCCcc---------CcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCccc---ccccccc
Confidence 99999876 344433 467888999999998887765 667888888999999888876432 2333334
Q ss_pred CEEeCCCCCCCccc-----------------c--------------------CcccCCCCCCCEEEccCCcCCccCCccc
Q 040025 231 IHLDLSQNQLLSGE-----------------I--------------------PASIGNLGSLKELDLSGNILSSKLPASI 273 (362)
Q Consensus 231 ~~L~l~~n~~~~~~-----------------l--------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~l 273 (362)
+.|++++|...... + ...+..+++|++|++++|.+.+..|..+
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc
Confidence 33333333221100 0 1223344455555555555554444445
Q ss_pred cCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCE
Q 040025 274 GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEE 353 (362)
Q Consensus 274 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 353 (362)
..+++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++. + +..+++|++
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 555555555555555542 3333344455555555555544 3343444455555555555555432 2 344555555
Q ss_pred EeCCCCCC
Q 040025 354 LDLSENQL 361 (362)
Q Consensus 354 L~l~~n~l 361 (362)
|++++|++
T Consensus 344 L~l~~N~~ 351 (390)
T 3o6n_A 344 LTLSHNDW 351 (390)
T ss_dssp EECCSSCE
T ss_pred EEcCCCCc
Confidence 55555554
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-32 Score=264.63 Aligned_cols=259 Identities=27% Similarity=0.263 Sum_probs=195.6
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccC--chhhcCCCCCC
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQI--PSEILELSNLV 150 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--p~~l~~l~~L~ 150 (362)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+...+..+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 302 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp TCCEEECTTCCCSBGGGG--CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cCCEEECccCCcCcCchh--hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 444555555554443333 44455555555555554443312223555666666666666554433 44555666666
Q ss_pred EEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCC
Q 040025 151 SLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKL 230 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 230 (362)
+|++++|.+. ...+..+..+++|++|++++|.+.+...+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 380 ~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 380 SLNLSYNEPL--------SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp EEECCSCSCE--------EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred EEECCCCcCC--------cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 6666666431 22345677889999999999998877644568899999999999999988888889999999
Q ss_pred CEEeCCCCCCCcccc--CcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEec
Q 040025 231 IHLDLSQNQLLSGEI--PASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTL 308 (362)
Q Consensus 231 ~~L~l~~n~~~~~~l--~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 308 (362)
++|++++|.+....+ +..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++.| .|++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 999999997654333 3567889999999999999998889999999999999999999999999999999999 9999
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCCCCch
Q 040025 309 VENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 309 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999998888888899999999999999987654
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-31 Score=260.56 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|+++++.+.+..+. .+.++++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..+.++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 4566666666666655554 566666666666666665543 3455666666666666666665555666666666666
Q ss_pred EEcCCCCCCCCc------------cc-----ccCCCchhhhhcCCCCCEEEcCCcCCCC
Q 040025 152 LDLSGNAYPGGI------------LE-----LRKSSLTNLAEKLTNLETLNLGLVSIFN 193 (362)
Q Consensus 152 L~l~~n~l~~~~------------~~-----~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 193 (362)
|++++|.+.+.. +. +....+|..+.++++|++|++++|.+++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 666666543211 00 0112467778888999999888887653
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-32 Score=267.32 Aligned_cols=272 Identities=20% Similarity=0.227 Sum_probs=199.6
Q ss_pred CCcEEEEEcCCCCCccc-----------------cCCccccc--cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECC
Q 040025 71 NGHVFKLDLSNSCLQGS-----------------INSSSGLF--NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLS 131 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~-----------------~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 131 (362)
..+++.|++++|.+++. +|. .++ ++++|++|++++|.+.+. +|..++++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence 46799999999999985 777 777 999999999999998886 89999999999999999
Q ss_pred CCc-ccc-cCchhhcCC------CCCCEEEcCCCCCCCCcccccCCCchh--hhhcCCCCCEEEcCCcCCCCCCCCCCcC
Q 040025 132 DSF-FIG-QIPSEILEL------SNLVSLDLSGNAYPGGILELRKSSLTN--LAEKLTNLETLNLGLVSIFNTPIPHNLG 201 (362)
Q Consensus 132 ~~~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 201 (362)
+|. +.+ .+|..++.+ ++|++|++++|.+ ..+|. .+..+++|++|++++|.+++.. + .+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l---------~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~ 350 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL---------KTFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFG 350 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC---------SSCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcC---------CccCchhhhccCCCCCEEeCcCCcCccch-h-hhC
Confidence 998 888 899988876 9999999999976 46676 7889999999999999998655 5 788
Q ss_pred CCCCCcEEEeecccCCccCCccccCCCC-CCEEeCCCCCCCccccCcccCCCC--CCCEEEccCCcCCccCCcccc----
Q 040025 202 NLSSLRFLSLNNCLVRGRIPSSLGNLLK-LIHLDLSQNQLLSGEIPASIGNLG--SLKELDLSGNILSSKLPASIG---- 274 (362)
Q Consensus 202 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~l~~~l~~~~--~L~~L~l~~n~l~~~~~~~l~---- 274 (362)
.+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 8888888888888887 77777888888 888888888553 5676665543 777777777777776666666
Q ss_pred ---CCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccC-C-------CCCCEEEccCCcCCCCchh
Q 040025 275 ---NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGN-L-------RSLEILDLSLNKFSGELPV 343 (362)
Q Consensus 275 ---~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-~-------~~L~~L~L~~n~l~~~~~~ 343 (362)
.+++|++|++++|.++...+..+..+++|+.|++++|.++ .+|..... . ++|++|+|++|.++ .+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 5566777777777666322223344555666666665555 33332111 1 14555555555555 3444
Q ss_pred hhc--CCCCCCEEeCCCCCC
Q 040025 344 FIG--NLPSLEELDLSENQL 361 (362)
Q Consensus 344 ~~~--~~~~L~~L~l~~n~l 361 (362)
.+. .+++|++|+|++|+|
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCC
T ss_pred hhhhccCCCcCEEECCCCCC
Confidence 443 455555555555544
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-32 Score=262.42 Aligned_cols=268 Identities=22% Similarity=0.167 Sum_probs=167.2
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
+++.+++.++.+....+. .+..+++|++|++++|.+.+. .+..|+.+++|++|++++|.+.+..|..++.+++|++|
T Consensus 52 ~l~~l~l~~~~l~~lp~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAA--LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCSEEEESSCEESEECTH--HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CceEEEeeCCCCCCcCHH--HHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467778888777655444 567888899999988888764 45578888889999998888887777778888889999
Q ss_pred EcCCCCCCCCcccccCCCchh-hhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCC
Q 040025 153 DLSGNAYPGGILELRKSSLTN-LAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLI 231 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 231 (362)
++++|.+ ..+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+.. +..+++|+
T Consensus 129 ~L~~n~l---------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~ 195 (597)
T 3oja_B 129 VLERNDL---------SSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLF 195 (597)
T ss_dssp ECCSSCC---------CCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCS
T ss_pred EeeCCCC---------CCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhh
Confidence 9988876 33443 3577888888888888887766 667888888888888888876532 22333333
Q ss_pred EEeCCCCCCCccc-----------------c--------------------CcccCCCCCCCEEEccCCcCCccCCcccc
Q 040025 232 HLDLSQNQLLSGE-----------------I--------------------PASIGNLGSLKELDLSGNILSSKLPASIG 274 (362)
Q Consensus 232 ~L~l~~n~~~~~~-----------------l--------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 274 (362)
.|++++|.+.... + +..+..+++|+.|++++|.+.+.+|..+.
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 3333333221100 0 12344445555555555555555555555
Q ss_pred CCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEE
Q 040025 275 NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEEL 354 (362)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 354 (362)
.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+++. + +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 55555555555555552 3333444555555555555555 3444444555555555555555532 1 3445555566
Q ss_pred eCCCCCC
Q 040025 355 DLSENQL 361 (362)
Q Consensus 355 ~l~~n~l 361 (362)
++++|++
T Consensus 351 ~l~~N~~ 357 (597)
T 3oja_B 351 TLSHNDW 357 (597)
T ss_dssp ECCSSCE
T ss_pred EeeCCCC
Confidence 6665554
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-30 Score=236.09 Aligned_cols=285 Identities=22% Similarity=0.241 Sum_probs=228.4
Q ss_pred CCCccccceEecCC---------CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCE
Q 040025 57 IDCCSWDGVECNEN---------NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSY 127 (362)
Q Consensus 57 ~~~c~~~~v~c~~~---------~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 127 (362)
...|.|..+.|... ...++.|+++++.+++..+. .+.++++|++|++++|.+... .|..+..+++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 104 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER 104 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCE
Confidence 34578888888531 34788999999999877665 688999999999999988865 5788999999999
Q ss_pred EECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCC-CCCCCcCCCCCC
Q 040025 128 LNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNT-PIPHNLGNLSSL 206 (362)
Q Consensus 128 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~L 206 (362)
|++++|.+. .+|..+. ++|++|++++|.+. ...+..+..+++|++|++++|.+... ..+..+..+++|
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEIT--------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCC--------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCccc--------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 999999876 5666554 79999999999762 22345678899999999999998642 225678889999
Q ss_pred cEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 040025 207 RFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM 286 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 286 (362)
++|++++|.+. .+|..+. ++|+.|++++|.+ ++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 174 ~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CEEECCCCccc-cCCcccc--ccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 99999999987 4554443 7899999999954 444567788999999999999999987777888999999999999
Q ss_pred CcCCCccchhhhCCCCCCEEecccCcccccCCccccC------CCCCCEEEccCCcCCC--CchhhhcCCCCCCEEeCCC
Q 040025 287 NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGN------LRSLEILDLSLNKFSG--ELPVFIGNLPSLEELDLSE 358 (362)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~ 358 (362)
|.++ .+|..+..+++|+.|++++|.+++..+..+.. ...++.|++++|.+.. ..|..+..+++++.+++++
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 9998 78888889999999999999998665555543 3788999999998763 5667788899999999999
Q ss_pred CC
Q 040025 359 NQ 360 (362)
Q Consensus 359 n~ 360 (362)
|+
T Consensus 329 N~ 330 (330)
T 1xku_A 329 YK 330 (330)
T ss_dssp --
T ss_pred cC
Confidence 85
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=269.49 Aligned_cols=290 Identities=23% Similarity=0.205 Sum_probs=228.2
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccC
Q 040025 60 CSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQI 139 (362)
Q Consensus 60 c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 139 (362)
|.|..|.+ .+.+++.|+|++|.+.+..+. .+.++++|++|++++|.....-.+..|.++++|++|++++|.+.+..
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 45666666 457899999999999887776 79999999999999996544423677999999999999999998888
Q ss_pred chhhcCCCCCCEEEcCCCCCCCCcccccCCCchh--hhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCC
Q 040025 140 PSEILELSNLVSLDLSGNAYPGGILELRKSSLTN--LAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVR 217 (362)
Q Consensus 140 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 217 (362)
|..+..+++|++|++++|.+.+ .++. .+..+++|++|++++|.+++...+..+.++++|++|++++|.+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSD--------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSS--------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HhHccCCcccCEeeCcCCCCCc--------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9999999999999999997643 1222 36778889999999988887764567888888888888888876
Q ss_pred ccCCccccCC--CC------------------------------CCEEeCCCCCCCccccCccc----------------
Q 040025 218 GRIPSSLGNL--LK------------------------------LIHLDLSQNQLLSGEIPASI---------------- 249 (362)
Q Consensus 218 ~~~~~~~~~~--~~------------------------------L~~L~l~~n~~~~~~l~~~l---------------- 249 (362)
+..+..+..+ ++ |+.|++++|.. ++..+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW-TVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS-STTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC-chhHHHHHHhhcCcccccceeccc
Confidence 6555444322 22 66777776632 11111111
Q ss_pred --------------------CC--CCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEe
Q 040025 250 --------------------GN--LGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307 (362)
Q Consensus 250 --------------------~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 307 (362)
.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 11 25788888888888877788888899999999999999877788888899999999
Q ss_pred cccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 308 LVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 308 L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 9999998777888889999999999999998777777888999999999999874
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=5.9e-32 Score=260.95 Aligned_cols=147 Identities=28% Similarity=0.268 Sum_probs=121.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|++++|.+.+..+. .+..+++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..+..+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4799999999999987776 799999999999999998875 5678999999999999999998877778999999999
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLL 228 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 228 (362)
|++++|.+.+ ...+..+..+++|++|++++|.+.+...+..+..+++|++|++++|.+.+..|..+..++
T Consensus 103 L~Ls~n~l~~-------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 103 LNLMGNPYQT-------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp EECTTCCCSS-------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred EECCCCcccc-------cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 9999998642 234456778889999999988854443246788888999999998888776666555433
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=3.8e-31 Score=258.33 Aligned_cols=86 Identities=27% Similarity=0.274 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccc-cCchhhcCCCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIG-QIPSEILELSNLV 150 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~p~~l~~l~~L~ 150 (362)
.++++|++++|.+.+..|. .+.++++|++|++++|.+... .+..++++++|++|++++|.+.+ .+|..+.++++|+
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TTCCEEECTTCCCCCCCTT--SSTTCTTCCEEECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred hhcCEeECCCCcccccChh--hcCCcccCCEEEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 4677777777777666555 677777777777777777653 33567888888888888888765 5788899999999
Q ss_pred EEEcCCCCCC
Q 040025 151 SLDLSGNAYP 160 (362)
Q Consensus 151 ~L~l~~n~l~ 160 (362)
+|++++|.+.
T Consensus 157 ~L~Ls~n~l~ 166 (606)
T 3vq2_A 157 HVDLSYNYIQ 166 (606)
T ss_dssp EEECCSSCCC
T ss_pred EEEccCCcce
Confidence 9999998764
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=7.7e-31 Score=247.38 Aligned_cols=255 Identities=26% Similarity=0.281 Sum_probs=208.0
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccC-chhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhh
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQI-PSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAE 176 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 176 (362)
++|++|++++|.+.+. .+..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+. ...|..+.
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--------QLETGAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC--------EECTTTTT
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC--------ccChhhcc
Confidence 7899999999999865 6788999999999999999987555 567899999999999999762 23366788
Q ss_pred cCCCCCEEEcCCcCCCCCCC-CCCcCCCCCCcEEEeecccCCccCCcc-ccCCCCCCEEeCCCCCCCccccCcccCC---
Q 040025 177 KLTNLETLNLGLVSIFNTPI-PHNLGNLSSLRFLSLNNCLVRGRIPSS-LGNLLKLIHLDLSQNQLLSGEIPASIGN--- 251 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~l~~~l~~--- 251 (362)
.+++|++|++++|.+++... ...+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.. ..+..+..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-cChhhhhcccc
Confidence 89999999999999987431 344889999999999999999877766 8899999999999995432 22222211
Q ss_pred -------------------------------C------------------------------------------------
Q 040025 252 -------------------------------L------------------------------------------------ 252 (362)
Q Consensus 252 -------------------------------~------------------------------------------------ 252 (362)
+
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 1
Q ss_pred ---------------CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccC
Q 040025 253 ---------------GSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDL 317 (362)
Q Consensus 253 ---------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 317 (362)
++|+.|++++|.+.+.++..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 34555555556666566777888889999999999988777778888899999999999988777
Q ss_pred CccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 318 PAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 318 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
|..+..+++|++|+|++|.+++..|..+..+++|++|++++|+|+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 888888999999999999998877888889999999999999874
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=8.5e-31 Score=236.99 Aligned_cols=282 Identities=22% Similarity=0.270 Sum_probs=222.2
Q ss_pred CCccccceEecCC---------CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEE
Q 040025 58 DCCSWDGVECNEN---------NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYL 128 (362)
Q Consensus 58 ~~c~~~~v~c~~~---------~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 128 (362)
..|.|..+.|... ..+++.|+++++.+.+..+. .+.++++|++|++++|.+... .+..+..+++|++|
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKL 107 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEE
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEE
Confidence 3477888888532 24788999999998876665 788999999999999988765 57788999999999
Q ss_pred ECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCC-CCCCCcCCCCCC
Q 040025 129 NLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNT-PIPHNLGNLSSL 206 (362)
Q Consensus 129 ~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~L 206 (362)
++++|.+. .+|..+. ++|++|++++|.+. .++ ..+..+++|++|++++|.++.. ..+..+..+ +|
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR---------KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCC---------CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccC---------ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 99999876 5666554 78999999998762 333 3567889999999999988642 225666777 89
Q ss_pred cEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 040025 207 RFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM 286 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 286 (362)
++|++++|.+.+ +|..+. ++|+.|++++|.+. +..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 999999998874 554443 68999999999553 34456788899999999999999987777888999999999999
Q ss_pred CcCCCccchhhhCCCCCCEEecccCcccccCCccccC------CCCCCEEEccCCcCC--CCchhhhcCCCCCCEEeCCC
Q 040025 287 NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGN------LRSLEILDLSLNKFS--GELPVFIGNLPSLEELDLSE 358 (362)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~ 358 (362)
|.++ .+|..+..+++|+.|++++|.+++..+..+.. ...|+.|++++|.+. +..|..+..+++|+.+++++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 9998 78888889999999999999998665555543 367899999999887 56777888899999999998
Q ss_pred CC
Q 040025 359 NQ 360 (362)
Q Consensus 359 n~ 360 (362)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 84
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=5.1e-31 Score=252.79 Aligned_cols=281 Identities=23% Similarity=0.221 Sum_probs=189.1
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccc-cCchhhcCCCCC
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIG-QIPSEILELSNL 149 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~p~~l~~l~~L 149 (362)
..++++|++++|.+.+..|. .+..+++|++|++++|.+.. +|.. .+++|++|++++|.+.+ .+|..++.+++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDIS--VFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGG--GGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred cccccEEecCCCccCCcChH--HhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence 46788888888888877666 78888999999999888873 5554 78899999999988876 477888899999
Q ss_pred CEEEcCCCCCCCCccc----c-------c------CCCchhhhhc-----------------------------------
Q 040025 150 VSLDLSGNAYPGGILE----L-------R------KSSLTNLAEK----------------------------------- 177 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~----~-------~------~~~~~~~~~~----------------------------------- 177 (362)
++|++++|.+.+..+. + . .+..|..+..
T Consensus 118 ~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp CEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred eEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 9999998877532110 0 0 0011111111
Q ss_pred ------------------------------------------------CCCCCEEEcCCcCCCCCCCCCCc---------
Q 040025 178 ------------------------------------------------LTNLETLNLGLVSIFNTPIPHNL--------- 200 (362)
Q Consensus 178 ------------------------------------------------l~~L~~L~l~~~~~~~~~l~~~~--------- 200 (362)
.++|++|++++|.+++.. +..+
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL-DFRDFDYSGTSLK 276 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC-CCCCCCCCSCCCC
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc-ccchhhcccccCc
Confidence 125666666666555332 2222
Q ss_pred --------------------------------------------CCCCCCcEEEeecccCCccCCccccCCCCCCEEeCC
Q 040025 201 --------------------------------------------GNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLS 236 (362)
Q Consensus 201 --------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 236 (362)
..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 277 ~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred eeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 455666666666666666566666666777777777
Q ss_pred CCCCCc-cccCcccCCCCCCCEEEccCCcCCccCCc-cccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCccc
Q 040025 237 QNQLLS-GEIPASIGNLGSLKELDLSGNILSSKLPA-SIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 237 ~n~~~~-~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
+|.+.. ..+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|.++
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 664432 13445566677777777777777653443 356667777777777777655555432 57788888888777
Q ss_pred ccCCccccCCCCCCEEEccCCcCCCCchhh-hcCCCCCCEEeCCCCCCC
Q 040025 315 GDLPAFIGNLRSLEILDLSLNKFSGELPVF-IGNLPSLEELDLSENQLS 362 (362)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~n~ls 362 (362)
.+|..+..+++|++|+|++|+++ .+|.. +..+++|++|++++|+++
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 67776667888888888888888 45554 777888888888888764
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-30 Score=233.86 Aligned_cols=267 Identities=21% Similarity=0.236 Sum_probs=227.0
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
+++.++++++++.. +|. .+ .+.|++|++++|.+... .+..+.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 45688999988874 333 22 37899999999998865 45579999999999999999988889999999999999
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc--cCCccccCCCCC
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG--RIPSSLGNLLKL 230 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L 230 (362)
++++|.+. .+|..+ .++|++|++++|.+.+.. +..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 106 ~Ls~n~l~---------~l~~~~--~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 106 YLSKNQLK---------ELPEKM--PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp ECCSSCCS---------BCCSSC--CTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred ECCCCcCC---------ccChhh--cccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 99999863 333322 279999999999998765 6678999999999999999853 667788999999
Q ss_pred CEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEeccc
Q 040025 231 IHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVE 310 (362)
Q Consensus 231 ~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 310 (362)
++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 174 ~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 174 SYIRIADTNIT--TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CEEECCSSCCC--SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred CEEECCCCccc--cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 99999999654 3565543 8999999999999988889999999999999999999977777889999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCCchhhhcC------CCCCCEEeCCCCCCC
Q 040025 311 NNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN------LPSLEELDLSENQLS 362 (362)
Q Consensus 311 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l~~n~ls 362 (362)
|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.++.|++++|+++
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 9998 88888999999999999999999766666643 478999999999873
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.6e-30 Score=250.16 Aligned_cols=108 Identities=23% Similarity=0.165 Sum_probs=69.3
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|++++|.+.+..+. .+.++++|++|++++|.+.+. .+..|..+++|++|++++|.+. .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 5677888888877766555 677777888888887777654 4566777777777777777765 45544 5666667
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIF 192 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 192 (362)
|++++|.+.+ ..+|..+..+++|++|++++|.++
T Consensus 126 L~Ls~N~l~~-------l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 126 LDLSFNDFDV-------LPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EECCSSCCSB-------CCCCGGGGGCTTCCEEEEECSBCC
T ss_pred EECCCCCccc-------cCchHhhcccCcccEEecCCCccc
Confidence 7776665422 122344555555555555555443
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=249.33 Aligned_cols=271 Identities=22% Similarity=0.286 Sum_probs=197.4
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|++++|.+.+..+. .+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+. .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 6789999999999876655 788999999999999998864 5778999999999999999987 57766 8899999
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCC--cEEEeecccC--CccCCccccCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSL--RFLSLNNCLV--RGRIPSSLGNL 227 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~ 227 (362)
|++++|.+.+ ..+|..+..+++|++|++++|.+++. .+..+++| ++|++++|.+ .+..|..+..+
T Consensus 95 L~L~~N~l~~-------~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 95 LDLSFNAFDA-------LPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp EECCSSCCSS-------CCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred EeccCCcccc-------ccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeeccccccccccccccccc
Confidence 9999997632 34677888999999999999998763 35667777 9999999988 55555444432
Q ss_pred C-------------------------------------------------------------------------------
Q 040025 228 L------------------------------------------------------------------------------- 228 (362)
Q Consensus 228 ~------------------------------------------------------------------------------- 228 (362)
.
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 2
Q ss_pred ----CCCEEeCCCCCCCccccCccc-----------------------------------------------------CC
Q 040025 229 ----KLIHLDLSQNQLLSGEIPASI-----------------------------------------------------GN 251 (362)
Q Consensus 229 ----~L~~L~l~~n~~~~~~l~~~l-----------------------------------------------------~~ 251 (362)
+|++|++++|.+ ++.+|..+ ..
T Consensus 244 ~~~~~L~~L~l~~n~l-~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHTSSCSEEEEEEEEE-ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhCcccEEEeecccc-cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 566666665532 23344433 45
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCC--ccchhhhCCCCCCEEecccCcccccCCc-cccCCCCCC
Q 040025 252 LGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSG--EVPAVIGNLSSLKALTLVENNFSGDLPA-FIGNLRSLE 328 (362)
Q Consensus 252 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~ 328 (362)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+.+.+|. .+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5667777777777776666667777777777777777764 3455566777777777777777764554 355667777
Q ss_pred EEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 329 ILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+|++++|.+++.+|..+. ++|++|++++|.|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 777777777666655543 67777777777664
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.5e-30 Score=232.96 Aligned_cols=266 Identities=21% Similarity=0.217 Sum_probs=226.5
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
+++.++++++++. .+|. .+ .++|++|++++|.+... .+..+.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 3568999999887 3443 33 47999999999998764 46679999999999999999998889999999999999
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCC--ccCCccccCCCCC
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVR--GRIPSSLGNLLKL 230 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L 230 (362)
++++|.+ ..+|..+. ++|++|++++|.+.... +..+..+++|++|++++|.+. +..+..+..+ +|
T Consensus 108 ~L~~n~l---------~~l~~~~~--~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHL---------VEIPPNLP--SSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCC---------CSCCSSCC--TTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred ECCCCcC---------CccCcccc--ccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 9999986 33443332 79999999999998765 667899999999999999985 3566677777 99
Q ss_pred CEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEeccc
Q 040025 231 IHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVE 310 (362)
Q Consensus 231 ~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 310 (362)
+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 175 ~~L~l~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 175 NYLRISEAKLTG--IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SCCBCCSSBCSS--CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CEEECcCCCCCc--cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 999999996543 565543 7999999999999988888999999999999999999987777899999999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCCCCchhhhcC------CCCCCEEeCCCCCCC
Q 040025 311 NNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN------LPSLEELDLSENQLS 362 (362)
Q Consensus 311 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~l~~n~ls 362 (362)
|.+. .+|..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|+++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 9998 88888999999999999999999766666654 367999999999874
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=249.04 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=71.8
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCC-CccchhhhCCCCCCEEecccCcccccCCccccCCCCC
Q 040025 249 IGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS-GEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL 327 (362)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 327 (362)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 344455555555555555555555555666666666666655 3455566666666666666666666666666667777
Q ss_pred CEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 328 EILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 328 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 77777777777666666667777777777777653
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.7e-29 Score=228.52 Aligned_cols=267 Identities=25% Similarity=0.372 Sum_probs=179.4
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|++++|.+.+.. .+..+++|++|++++|.+.. + +.+..+++|++|++++|.+.+ ++. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~----~~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDIS----PLSNLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccch----hhhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeE
Confidence 45677777777665432 25666777777777776653 2 346666777777777666543 333 556666666
Q ss_pred EEcCCCCCCCCccc-----------cc---CCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCC
Q 040025 152 LDLSGNAYPGGILE-----------LR---KSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVR 217 (362)
Q Consensus 152 L~l~~n~l~~~~~~-----------~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 217 (362)
|++++|........ +. ...++. +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc---cccCCCccceeecccCCCC
Confidence 66666632110000 00 011111 455666666666666665433 1566677777777777665
Q ss_pred ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhh
Q 040025 218 GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVI 297 (362)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 297 (362)
+..+ +..+++|+.|++++|.+.. ++. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred CCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 4333 6777888888888885533 333 77888888899888888753 4577888899999999988853 357
Q ss_pred hCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 298 GNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 298 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..| +..+++|++|++++|+|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 788899999999999888888888889999999999999887655 778899999999999875
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=262.33 Aligned_cols=275 Identities=23% Similarity=0.245 Sum_probs=195.5
Q ss_pred CcEEEEEcCCCCCcccc-CCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchh--hcCCCC
Q 040025 72 GHVFKLDLSNSCLQGSI-NSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSE--ILELSN 148 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~--l~~l~~ 148 (362)
.+++.|++++|...+.+ +. .+.++++|++|+|++|.+.+. .|..|.++++|++|++++|.+.+.+|.. +..+++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45666677666544443 33 566667777777776666554 4566666667777777666666555444 666666
Q ss_pred CCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC-------------------------CCCCcCCC
Q 040025 149 LVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP-------------------------IPHNLGNL 203 (362)
Q Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-------------------------l~~~~~~~ 203 (362)
|++|++++|.+.+ ...+..+.++++|++|++++|.+++.. .+..+..+
T Consensus 125 L~~L~Ls~N~l~~-------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 125 LTRLDLSKNQIRS-------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCEEEEESCCCCC-------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred CCEEECCCCcccc-------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 6666666665432 122234555666666666665554322 03333333
Q ss_pred CC------CcEEEeecccCCccCCccccC--------------------------------------CCCCCEEeCCCCC
Q 040025 204 SS------LRFLSLNNCLVRGRIPSSLGN--------------------------------------LLKLIHLDLSQNQ 239 (362)
Q Consensus 204 ~~------L~~L~l~~n~l~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~ 239 (362)
++ |++|++++|.+.+..+..+.. .++|+.|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 33 888888888765544433221 2679999999995
Q ss_pred CCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCc
Q 040025 240 LLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA 319 (362)
Q Consensus 240 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 319 (362)
+ .+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 278 l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 278 V-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp C-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred c-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 5 445577889999999999999999988889999999999999999999988888999999999999999999877777
Q ss_pred cccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 320 FIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 320 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
.+..+++|++|+|++|.+++ ++ .+++|+.|++++|+++
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC
T ss_pred hhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc
Confidence 88999999999999999985 22 2667777777777653
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7.6e-30 Score=235.86 Aligned_cols=251 Identities=22% Similarity=0.175 Sum_probs=187.3
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|+++++.+.+..+. .+..+++|++|++++|.+... .+..++.+++|++|++++|.+....+..+..+++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 4678888888888766555 677888888888888877764 4566778888888888888776333333577888888
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCc-------------------------------
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNL------------------------------- 200 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~------------------------------- 200 (362)
|++++|.+.+ ..+..+..+++|++|++++|.+++.. ...+
T Consensus 146 L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 146 LSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp EECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC
T ss_pred EECCCCccCc--------cChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCCCe
Confidence 8888876521 12334556667777777776665432 1111
Q ss_pred ------CCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCcccc
Q 040025 201 ------GNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIG 274 (362)
Q Consensus 201 ------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 274 (362)
...++|++|++++|.+.+. ..+..+++|+.|++++|.+ ++..|..+..+++|++|++++|.+++ ++..+.
T Consensus 217 l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 217 INVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp CCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECCSSCCCE-EECSSS
T ss_pred eeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC-CCcChhHccccccCCEEECCCCcCcc-cCcccC
Confidence 1124566777777776643 4678899999999999955 44567889999999999999999985 566667
Q ss_pred CCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCch
Q 040025 275 NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
.+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|++|++++|.+.+...
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence 8999999999999998 5677788899999999999999844 3 6778999999999999886533
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.1e-30 Score=259.16 Aligned_cols=267 Identities=20% Similarity=0.198 Sum_probs=191.5
Q ss_pred CCcEEEEEcCCCCCcc-----------------ccCCccccc--cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECC
Q 040025 71 NGHVFKLDLSNSCLQG-----------------SINSSSGLF--NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLS 131 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~-----------------~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 131 (362)
..+++.|+|++|.+++ .+|. .++ ++++|++|+|++|.+.+. +|..++++++|++|+++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIA 523 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECc
Confidence 3679999999999998 3676 666 999999999999998876 89999999999999999
Q ss_pred CCc-ccc-cCchhhcCCC-------CCCEEEcCCCCCCCCcccccCCCchh--hhhcCCCCCEEEcCCcCCCCCCCCCCc
Q 040025 132 DSF-FIG-QIPSEILELS-------NLVSLDLSGNAYPGGILELRKSSLTN--LAEKLTNLETLNLGLVSIFNTPIPHNL 200 (362)
Q Consensus 132 ~~~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~l~~~~ 200 (362)
+|. +.+ .+|..+..++ +|++|++++|.+ ..+|. .+..+++|++|++++|.++ .++ .+
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L---------~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~ 591 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL---------EEFPASASLQKMVKLGLLDCVHNKVR--HLE-AF 591 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC---------CBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC---------CccCChhhhhcCCCCCEEECCCCCcc--cch-hh
Confidence 998 888 7888776655 999999999976 46676 7889999999999999998 335 88
Q ss_pred CCCCCCcEEEeecccCCccCCccccCCCC-CCEEeCCCCCCCccccCcccCCCC--CCCEEEccCCcCCccCCccc---c
Q 040025 201 GNLSSLRFLSLNNCLVRGRIPSSLGNLLK-LIHLDLSQNQLLSGEIPASIGNLG--SLKELDLSGNILSSKLPASI---G 274 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~l~~~l~~~~--~L~~L~l~~n~l~~~~~~~l---~ 274 (362)
..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|... .
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 99999999999999988 78888888888 999999999653 5676665543 37777777776665443211 1
Q ss_pred --CCCCCCEEEccCCcCCCccchhh-hCCC-------------------------------CCCEEecccCcccccCCcc
Q 040025 275 --NLSSLKELDLSMNIFSGEVPAVI-GNLS-------------------------------SLKALTLVENNFSGDLPAF 320 (362)
Q Consensus 275 --~l~~L~~L~L~~n~l~~~~~~~l-~~l~-------------------------------~L~~L~L~~n~l~~~~~~~ 320 (362)
.+++|+.|++++|.++ .+|..+ ..++ +|+.|+|++|.+. .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 1234455555555444 233222 2344 4555555555554 44444
Q ss_pred cc--CCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCC
Q 040025 321 IG--NLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSE 358 (362)
Q Consensus 321 l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 358 (362)
+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 43 45555555555555554 455555555555555544
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5.8e-30 Score=253.21 Aligned_cols=278 Identities=24% Similarity=0.181 Sum_probs=186.3
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|+++++.+.+..+. .+.++++|++|++++|.+.+. .+..++++++|++|++++|.+.+..+..+..+++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 5788888888888876555 688888888888888887765 5667788888888888888876544446888888888
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCcccc--CCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLG--NLLK 229 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~ 229 (362)
|++++|.+. ...+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. .+++
T Consensus 102 L~L~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 102 LHLMSNSIQ--------KIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp EECCSSCCC--------CCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred EECCCCccC--------ccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 888888652 122245667788888888888877665 66677778888888887777655544332 3456
Q ss_pred CCEEeCCCCCCCc--------------------------------------------------cccCcccCCCC--CCCE
Q 040025 230 LIHLDLSQNQLLS--------------------------------------------------GEIPASIGNLG--SLKE 257 (362)
Q Consensus 230 L~~L~l~~n~~~~--------------------------------------------------~~l~~~l~~~~--~L~~ 257 (362)
|+.|++++|.+.. +..+..+..++ +|++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 6666666663321 11122232222 2666
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccc-----cCCc----cccCCCCCC
Q 040025 258 LDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG-----DLPA----FIGNLRSLE 328 (362)
Q Consensus 258 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~----~l~~~~~L~ 328 (362)
|++++|.+.+..+..++.+++|++|++++|.+++..|..+..+++|+.|++++|...+ .+|. .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 6666666665555556666666666666666665555555566666666665554332 1222 455677888
Q ss_pred EEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 329 ILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 888888888877777788888888888887753
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=235.78 Aligned_cols=279 Identities=22% Similarity=0.215 Sum_probs=178.5
Q ss_pred CCCCccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcc
Q 040025 56 NIDCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135 (362)
Q Consensus 56 ~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 135 (362)
....|.|.++ |+ .++++++. +|. .+ .++|++|++++|.+... .+..+.++++|++|++++|.+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~~-iP~--~~--~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLNS-IPS--GL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCSS-CCT--TC--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-ee----------CCCCCccc-ccc--cc--cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567888876 53 34444442 222 22 24677777777776643 333577777777777777777
Q ss_pred cccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchh-hhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc
Q 040025 136 IGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTN-LAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC 214 (362)
Q Consensus 136 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n 214 (362)
.+..|..+..+++|++|++++|.+ ..++. .+..+++|++|++++|.+........+..+++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYL---------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCC---------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CccCHhhcCCCCCCCEEECCCCcC---------CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 666666677777777777777765 23333 36667777777777777765441146677777777777777
Q ss_pred c-CCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCcc
Q 040025 215 L-VRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEV 293 (362)
Q Consensus 215 ~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 293 (362)
. +....+..+..+++|+.|++++|.+ ++..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccccCHHHccCCCCCCEEECCCCCc-CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 3 4544455677777777777777743 3344666777777777777777775433333445677777777777777543
Q ss_pred chhh---hCCCCCCEEecccCcccc----cCCccccCCCCCCEEEccCCcCCCCchhh-hcCCCCCCEEeCCCCCCC
Q 040025 294 PAVI---GNLSSLKALTLVENNFSG----DLPAFIGNLRSLEILDLSLNKFSGELPVF-IGNLPSLEELDLSENQLS 362 (362)
Q Consensus 294 ~~~l---~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~n~ls 362 (362)
+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|+++
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 3322 234566777777776665 35666677777777777777777 44444 467777777777777763
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.9e-29 Score=245.87 Aligned_cols=279 Identities=27% Similarity=0.272 Sum_probs=197.8
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
..+++|+|++|.+++..+. .|.++++|++|+|++|.+... .+.+|.++++|++|++++|.+.+..+..|.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 5789999999999977666 799999999999999998864 4567999999999999999988766677899999999
Q ss_pred EEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCc--------
Q 040025 152 LDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPS-------- 222 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-------- 222 (362)
|++++|.+.+ ++ ..+..+++|++|++++|.++....+..+..+++|++|++++|.+.+..+.
T Consensus 129 L~Ls~N~l~~---------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 129 LVAVETNLAS---------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp EECTTSCCCC---------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred EECCCCcCCC---------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 9999997642 21 12344555555555555554433344444444555544444432210000
Q ss_pred --------------------------------------------------------------------------------
Q 040025 223 -------------------------------------------------------------------------------- 222 (362)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (362)
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040025 223 -------------------------------------------------------------------------------- 222 (362)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (362)
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 359 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESC
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccc
Confidence
Q ss_pred ------cccCCCCCCEEeCCCCCCC-------------------------------------------------------
Q 040025 223 ------SLGNLLKLIHLDLSQNQLL------------------------------------------------------- 241 (362)
Q Consensus 223 ------~~~~~~~L~~L~l~~n~~~------------------------------------------------------- 241 (362)
....+++|+.++++.|...
T Consensus 360 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 360 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc
Confidence 0011233444444443221
Q ss_pred ------------------ccccCcccCCCCCCCEEEccCCcC-CccCCccccCCCCCCEEEccCCcCCCccchhhhCCCC
Q 040025 242 ------------------SGEIPASIGNLGSLKELDLSGNIL-SSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSS 302 (362)
Q Consensus 242 ------------------~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 302 (362)
.+..+..+..++.++.|++++|.+ .+..|..+..+++|++|+|++|++++..|..+..+++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 001112233445567777777753 3346677888889999999999999878888889999
Q ss_pred CCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCC-CCCCEEeCCCCCCC
Q 040025 303 LKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNL-PSLEELDLSENQLS 362 (362)
Q Consensus 303 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~ls 362 (362)
|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999987778888889999999999999998888888887 68999999999874
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.2e-29 Score=247.95 Aligned_cols=286 Identities=27% Similarity=0.245 Sum_probs=152.8
Q ss_pred EEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCC----------------------------CCCc----cCCC
Q 040025 74 VFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYS----------------------------EIPP----GIAN 121 (362)
Q Consensus 74 v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------------------~~~~----~l~~ 121 (362)
++.|++++|.+.+..+. .+..+++|++|++++|.+.+. .+|. .+..
T Consensus 250 L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGND--SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCCEECTT--TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCCCcCccCcc--cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 55666666655554444 455556666666665554432 0111 3555
Q ss_pred CCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCccc----------------ccC----CCchhhhhcCCCC
Q 040025 122 LSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILE----------------LRK----SSLTNLAEKLTNL 181 (362)
Q Consensus 122 l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~----------------~~~----~~~~~~~~~l~~L 181 (362)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +.. ...+..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 66777777777777666666677777777777777653211100 000 1112344556666
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCc-cccCcccCCCCCCCEEEc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLS-GEIPASIGNLGSLKELDL 260 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~l~~~l~~~~~L~~L~l 260 (362)
++|++++|.+++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.... +.+|..+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 6666666666543323455566666666666665544444444445555555555443211 234455556666666666
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCCCccc--------hhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEc
Q 040025 261 SGNILSSKLPASIGNLSSLKELDLSMNIFSGEVP--------AVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDL 332 (362)
Q Consensus 261 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L 332 (362)
++|.+++..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+....+..+..+++|++|+|
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 6666665555555566666666666665553211 12445555555555555555222234555555555555
Q ss_pred cCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 333 SLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 333 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
++|.+++..+..+..+++|++|++++|+|
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 55555544444445555555555555554
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-29 Score=226.71 Aligned_cols=256 Identities=24% Similarity=0.245 Sum_probs=205.5
Q ss_pred CCccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccc
Q 040025 58 DCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIG 137 (362)
Q Consensus 58 ~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 137 (362)
..|.|.++.|.. ++++ .+|. .+ .++|++|++++|.+... .+..+.++++|++|++++|.+..
T Consensus 5 C~C~~~~l~c~~------------~~l~-~ip~--~~--~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~ 66 (306)
T 2z66_A 5 CSCSGTEIRCNS------------KGLT-SVPT--GI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSF 66 (306)
T ss_dssp CEEETTEEECCS------------SCCS-SCCS--CC--CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCE
T ss_pred CeeCCCEEEcCC------------CCcc-cCCC--CC--CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCc
Confidence 347888777753 2333 2222 12 36899999999988743 23347899999999999998763
Q ss_pred --cCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeeccc
Q 040025 138 --QIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCL 215 (362)
Q Consensus 138 --~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 215 (362)
..+..+..+++|++|++++|.+ ..++..+..+++|++|++++|.+++......+..+++|++|++++|.
T Consensus 67 ~~~~~~~~~~~~~L~~L~Ls~n~i---------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 67 KGCCSQSDFGTTSLKYLDLSFNGV---------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp EEEEEHHHHSCSCCCEEECCSCSE---------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ccCcccccccccccCEEECCCCcc---------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 3467777899999999999965 34555677889999999999988876533678889999999999999
Q ss_pred CCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccch
Q 040025 216 VRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPA 295 (362)
Q Consensus 216 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 295 (362)
+.+..+..+..+++|++|++++|.+....+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 88788888888999999999999654335678888899999999999999887788888999999999999999876676
Q ss_pred hhhCCCCCCEEecccCcccccCCccccCCC-CCCEEEccCCcCCCC
Q 040025 296 VIGNLSSLKALTLVENNFSGDLPAFIGNLR-SLEILDLSLNKFSGE 340 (362)
Q Consensus 296 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~ 340 (362)
.+..+++|+.|++++|.+.+..|..+..++ +|++|+|++|.+++.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 788889999999999999988888888874 899999999988765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.1e-28 Score=224.40 Aligned_cols=258 Identities=29% Similarity=0.412 Sum_probs=192.8
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
..++.|+++++.+... + .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~---~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q---GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCC-T---TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred ccccEEEEeCCccccc-h---hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence 5789999999988743 3 48889999999999998875 444 8999999999999999864 44 5899999999
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCc-----------------------CCCCCCCCCCcCCCCCCcE
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLV-----------------------SIFNTPIPHNLGNLSSLRF 208 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-----------------------~~~~~~l~~~~~~~~~L~~ 208 (362)
|++++|.+.+ ++. +..+++|++|++++| .+.+.. .+..+++|++
T Consensus 115 L~l~~n~i~~---------~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~ 181 (347)
T 4fmz_A 115 LYLNEDNISD---------ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYS 181 (347)
T ss_dssp EECTTSCCCC---------CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSE
T ss_pred EECcCCcccC---------chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCE
Confidence 9999998743 222 444555555555555 443322 1445555555
Q ss_pred EEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 040025 209 LSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI 288 (362)
Q Consensus 209 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 288 (362)
|++++|.+.+. +. +..+++|+.|++++|.... ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEccCCccccc-cc-ccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 55555555422 21 5555666666666664322 122 6677888999999988875443 7788999999999998
Q ss_pred CCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 289 FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 289 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+++ + ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 255 l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 255 ISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred cCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 885 3 4578889999999999988853 34778899999999999999888899999999999999999875
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=245.62 Aligned_cols=127 Identities=27% Similarity=0.274 Sum_probs=109.9
Q ss_pred EEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEc
Q 040025 75 FKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDL 154 (362)
Q Consensus 75 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l 154 (362)
+.++++++++++ +|. .+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 789999999985 444 332 8999999999999875 5678999999999999999999888999999999999999
Q ss_pred CCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc
Q 040025 155 SGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG 218 (362)
Q Consensus 155 ~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 218 (362)
++|.+ ..+|.. .+++|++|++++|.+++...+..+.++++|++|++++|.+.+
T Consensus 108 s~N~l---------~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 108 SHNRL---------QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TTSCC---------CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCcC---------CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 99987 344544 799999999999999886656889999999999999998764
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=9.5e-30 Score=229.48 Aligned_cols=235 Identities=26% Similarity=0.311 Sum_probs=190.1
Q ss_pred cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhh
Q 040025 96 NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLA 175 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 175 (362)
..++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+ ..+|..+
T Consensus 79 ~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l---------~~lp~~l 146 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL---------RALPASI 146 (328)
T ss_dssp TSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC---------CCCCGGG
T ss_pred cccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc---------ccCcHHH
Confidence 3578888888888877 37777888888888888888877 7787788888888888888765 3445555
Q ss_pred hcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCC
Q 040025 176 EKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL 255 (362)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L 255 (362)
..+++|++|++++|.+.+.. +..+.. . ..+..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~-p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L 208 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTEL-PEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNL 208 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCC-CSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTC
T ss_pred hcCcCCCEEECCCCCCcccc-ChhHhh------c---------cchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCC
Confidence 55666666666655544433 322211 0 11123456999999999999654 688889999999
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCC
Q 040025 256 KELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLN 335 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n 335 (362)
++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 999999999995 6667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 336 KFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 336 ~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
.+.+.+|..+.++++|+.+++..+.+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999987654
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.9e-29 Score=221.88 Aligned_cols=249 Identities=26% Similarity=0.303 Sum_probs=211.3
Q ss_pred CEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCC
Q 040025 101 EWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTN 180 (362)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~ 180 (362)
+.++.+++.++. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.+... +..+..+..+++
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK------GCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE------EEEEHHHHSCSC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc------cCcccccccccc
Confidence 567888877764 565443 6899999999998744444578999999999999976321 223556678999
Q ss_pred CCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC-ccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEE
Q 040025 181 LETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELD 259 (362)
Q Consensus 181 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~ 259 (362)
|++|++++|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ .+..+..+..+++|++|+
T Consensus 80 L~~L~Ls~n~i~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 80 LKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp CCEEECCSCSEEEE--EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEE
T ss_pred cCEEECCCCccccC--hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEE
Confidence 99999999998753 5668899999999999999886554 5688999999999999954 455677788999999999
Q ss_pred ccCCcCCc-cCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCC
Q 040025 260 LSGNILSS-KLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 260 l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 338 (362)
+++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|+|++|.++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 99999986 57888999999999999999999877888999999999999999999777778889999999999999999
Q ss_pred CCchhhhcCCC-CCCEEeCCCCCCC
Q 040025 339 GELPVFIGNLP-SLEELDLSENQLS 362 (362)
Q Consensus 339 ~~~~~~~~~~~-~L~~L~l~~n~ls 362 (362)
+..|..+..++ +|++|++++|+++
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCHHHHHhhhccCCEEEccCCCee
Confidence 99999999885 9999999999873
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4e-28 Score=227.84 Aligned_cols=244 Identities=27% Similarity=0.284 Sum_probs=148.2
Q ss_pred EEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcC
Q 040025 76 KLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLS 155 (362)
Q Consensus 76 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~ 155 (362)
.++..+.+++ .+|. .+ .++++.|+|++|.+... .+..|.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 47 ~v~c~~~~l~-~iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 47 KVICVRKNLR-EVPD--GI--STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp EEECCSCCCS-SCCS--CC--CTTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred EEEeCCCCcC-cCCC--CC--CCCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4555555555 2333 22 26778888888877654 45667788888888888887776666777777888888888
Q ss_pred CCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccC-CccccCCCCCCEE
Q 040025 156 GNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRI-PSSLGNLLKLIHL 233 (362)
Q Consensus 156 ~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L 233 (362)
+|.+. .++ ..+..+++|++|++++|.+.... +..+..+++|++|++++|...+.+ +..+..+++|++|
T Consensus 121 ~n~l~---------~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 121 DNRLT---------TIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SSCCS---------SCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CCcCC---------eeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 77652 222 23555666666666666665544 445666666666666664332222 2345556666666
Q ss_pred eCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcc
Q 040025 234 DLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNF 313 (362)
Q Consensus 234 ~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 313 (362)
++++|.+. .+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+
T Consensus 191 ~L~~n~l~--~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 191 NLAMCNLR--EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ECTTSCCS--SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred cCCCCcCc--ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 66666442 233 245556666666666666655555666666666666666666655555555666666666666666
Q ss_pred cccCCccccCCCCCCEEEccCCcCC
Q 040025 314 SGDLPAFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 314 ~~~~~~~l~~~~~L~~L~L~~n~l~ 338 (362)
++..+..+..+++|+.|+|++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 6444445555666666666666544
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.8e-28 Score=228.73 Aligned_cols=227 Identities=26% Similarity=0.272 Sum_probs=118.2
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhh
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAE 176 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~ 176 (362)
+++++|+|++|.+... .+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .++ ..+.
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT---------VIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS---------BCCTTTSS
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC---------ccChhhhc
Confidence 4667777777766654 4555666777777777777666655666666666777777666542 222 2244
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC-ccccCCCCCCEEeCCCCCCCccccCcccCCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL 255 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L 255 (362)
.+++|++|++++|.+.... +..+..+++|++|++++|...+.++ ..+..+++|++|++++|.+.. +| .+..+++|
T Consensus 145 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L 220 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGL 220 (452)
T ss_dssp SCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTC
T ss_pred ccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccc
Confidence 4555555555555555433 3445555555555555532222222 234445555555555553321 22 23444555
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCC
Q 040025 256 KELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLN 335 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n 335 (362)
+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 55555555555444444555555555555555555444444444555555555555554333344444455555555554
Q ss_pred cCC
Q 040025 336 KFS 338 (362)
Q Consensus 336 ~l~ 338 (362)
.+.
T Consensus 301 p~~ 303 (452)
T 3zyi_A 301 PWN 303 (452)
T ss_dssp CEE
T ss_pred CcC
Confidence 433
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.2e-27 Score=226.25 Aligned_cols=267 Identities=30% Similarity=0.387 Sum_probs=153.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+. +. +..+++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 138 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNR 138 (466)
T ss_dssp TTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSE
T ss_pred cCCCEEECCCCccCCchh----hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCE
Confidence 567888888887765432 6677888888888777764 333 77777888888877776543 33 667777777
Q ss_pred EEcCCCCCCCCcc----------cc--cCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCcc
Q 040025 152 LDLSGNAYPGGIL----------EL--RKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGR 219 (362)
Q Consensus 152 L~l~~n~l~~~~~----------~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~ 219 (362)
|++++|.+.+... .+ ....++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+.
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCC
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccc
Confidence 7777765433100 00 000111 2445566666666666654432 244555555555555555433
Q ss_pred CC--------------------ccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCC
Q 040025 220 IP--------------------SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSL 279 (362)
Q Consensus 220 ~~--------------------~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 279 (362)
.+ ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..+++|
T Consensus 215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 22 123444445555555443221 111 4455555555655555553322 5555666
Q ss_pred CEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCC
Q 040025 280 KELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSEN 359 (362)
Q Consensus 280 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 359 (362)
+.|++++|.+++..+ +..+++|+.|++++|.+.+..| +..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC
Confidence 666666666654322 4556666666666666665444 45666777777777766643 35666777777777777
Q ss_pred CCC
Q 040025 360 QLS 362 (362)
Q Consensus 360 ~ls 362 (362)
+++
T Consensus 364 ~l~ 366 (466)
T 1o6v_A 364 QIS 366 (466)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-28 Score=236.83 Aligned_cols=253 Identities=21% Similarity=0.181 Sum_probs=201.7
Q ss_pred ccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhh
Q 040025 95 FNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNL 174 (362)
Q Consensus 95 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 174 (362)
..+++++.++++++.+... .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. ...+..
T Consensus 48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~ 118 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--------YLPPHV 118 (597)
T ss_dssp GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------CCCTTT
T ss_pred ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC--------CCCHHH
Confidence 3578999999999988753 3445788999999999999998888889999999999999999763 233455
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCC---
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGN--- 251 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~--- 251 (362)
+..+++|++|++++|.++... +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.... ...+..
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~ 196 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFH 196 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSE
T ss_pred HcCCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhh
Confidence 788999999999999998765 566799999999999999999888888999999999999999654321 111111
Q ss_pred -------------CC---------------------CCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhh
Q 040025 252 -------------LG---------------------SLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVI 297 (362)
Q Consensus 252 -------------~~---------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 297 (362)
.+ +|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..+
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 11 24444445555443 2456778888888888888888778888
Q ss_pred hCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 298 GNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 298 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|+|+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 888889999999888884 5666677888999999999888 57777888889999999998874
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.5e-27 Score=221.70 Aligned_cols=267 Identities=29% Similarity=0.381 Sum_probs=197.1
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCch---------
Q 040025 71 NGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPS--------- 141 (362)
Q Consensus 71 ~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~--------- 141 (362)
..+++.|+++++.+.+..+ +.++++|++|++++|.+... +. +..+++|++|++++|.+.+ ++.
T Consensus 89 l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~ 160 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQ 160 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSE
T ss_pred cccCCEEECCCCccccChh----hcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccE
Confidence 3577888888887765432 66778888888888776642 22 6666666666666665442 111
Q ss_pred -----------hhcCCCCCCEEEcCCCCCCCCcc----------cccC---CCchhhhhcCCCCCEEEcCCcCCCCCCCC
Q 040025 142 -----------EILELSNLVSLDLSGNAYPGGIL----------ELRK---SSLTNLAEKLTNLETLNLGLVSIFNTPIP 197 (362)
Q Consensus 142 -----------~l~~l~~L~~L~l~~n~l~~~~~----------~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~l~ 197 (362)
.+..+++|++|++++|.+.+... .+.. ..++. +..+++|++|++++|.+++.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--- 236 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--- 236 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC---
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc---
Confidence 14445566666666665432100 0000 11111 45567777777777776653
Q ss_pred CCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCC
Q 040025 198 HNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277 (362)
Q Consensus 198 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (362)
..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 357788999999999999886544 8889999999999996543 343 7889999999999999986544 78899
Q ss_pred CCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCC
Q 040025 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLS 357 (362)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 357 (362)
+|+.|++++|.+++..| +..+++|+.|++++|.+.+. ..+..+++|++|++++|++++..| +..+++|++|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 99999999999997665 67899999999999999864 467889999999999999998777 8899999999999
Q ss_pred CCCCC
Q 040025 358 ENQLS 362 (362)
Q Consensus 358 ~n~ls 362 (362)
+|+++
T Consensus 384 ~n~~~ 388 (466)
T 1o6v_A 384 DQAWT 388 (466)
T ss_dssp CEEEE
T ss_pred CCccc
Confidence 99763
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=4e-28 Score=234.19 Aligned_cols=183 Identities=25% Similarity=0.278 Sum_probs=145.4
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCccccc
Q 040025 59 CCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQ 138 (362)
Q Consensus 59 ~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 138 (362)
.|.|.++ |+. ++++++ .+|. .+ .++|++|++++|.+.+. .+..|.++++|++|++++|.+.+.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 5888887 743 445555 3343 23 37999999999998865 577899999999999999999988
Q ss_pred CchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc
Q 040025 139 IPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG 218 (362)
Q Consensus 139 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 218 (362)
.|..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+++...+..+..+++|++|++++|.+.+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLS--------SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC--------SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred ChhhccccccCCEEECCCCccC--------ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence 8889999999999999999763 33445588999999999999999876557789999999999999998554
Q ss_pred cCC-ccccCCCCCCEEeCCCCCCCccccCcccCC------------------------CCCCCEEEccCCcCCc
Q 040025 219 RIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGN------------------------LGSLKELDLSGNILSS 267 (362)
Q Consensus 219 ~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~------------------------~~~L~~L~l~~n~l~~ 267 (362)
.++ ..+..+++|++|++++|.+ ++..|..+.. +++|++|++++|.+++
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 138 EIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EECTTTTTTCCEEEEEEEEETTC-CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccCHhhhhcccccCeeeccCCcc-cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 554 5789999999999999954 4444555443 5667777777776654
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.1e-28 Score=213.51 Aligned_cols=269 Identities=23% Similarity=0.187 Sum_probs=214.0
Q ss_pred EEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEc
Q 040025 75 FKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDL 154 (362)
Q Consensus 75 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l 154 (362)
+.++.++++++.. |. ...++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 14 ~~~~c~~~~l~~i-p~----~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV----GIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSC-CT----TCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccC-Cc----CCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 5667777777633 32 2357999999999998864 4567899999999999999998877889999999999999
Q ss_pred CCCC-CCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEE
Q 040025 155 SGNA-YPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHL 233 (362)
Q Consensus 155 ~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 233 (362)
++|. +. ...+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 88 ~~n~~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 88 SDNAQLR--------SVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CSCTTCC--------CCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcc--------ccCHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 9996 42 222556778999999999999998776 7788999999999999999987776778899999999
Q ss_pred eCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcc
Q 040025 234 DLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNF 313 (362)
Q Consensus 234 ~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 313 (362)
++++|.+. ...+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 159 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 99999653 33344588899999999999999988899999999999999999999976667789999999999999998
Q ss_pred cccCCccccCCCCCCEEEccCCcCCCCchhhhcC--CCCCCEEeCCCCC
Q 040025 314 SGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN--LPSLEELDLSENQ 360 (362)
Q Consensus 314 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~l~~n~ 360 (362)
....+.. .-...++.+....+.+....|..+.. +..++..++.+|+
T Consensus 238 ~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp ECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred cCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 7544321 11122444556777777778877654 4566767777763
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6e-27 Score=220.31 Aligned_cols=257 Identities=19% Similarity=0.205 Sum_probs=137.5
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|+++++.+.+. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+.+. + +..+++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 3455666666655543 2 355556666666666655542 2 55555666666665555432 2 555555666
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCC------------------CCCcCCCCCCcEEEeec
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPI------------------PHNLGNLSSLRFLSLNN 213 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l------------------~~~~~~~~~L~~L~l~~ 213 (362)
|++++|.+.+ ++ +..+++|++|++++|.+++..+ ...+..+++|++|++++
T Consensus 111 L~L~~N~l~~---------l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 111 LNCDTNKLTK---------LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179 (457)
T ss_dssp EECCSSCCSC---------CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCS
T ss_pred EECCCCcCCe---------ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCC
Confidence 6665554421 11 3444555555555555544210 00244455555555555
Q ss_pred ccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCcc
Q 040025 214 CLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEV 293 (362)
Q Consensus 214 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 293 (362)
|.+.+ +| +..+++|+.|++++|.+.. + .+..+++|+.|++++|++++ +| +..+++|+.|++++|.+++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~--~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITK--L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSC--C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCe--e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 55543 22 4555555666665554322 1 24555666666666666654 33 555666666666666666443
Q ss_pred chhhhCCC-------CCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhh--------hcCCCCCCEEeCCC
Q 040025 294 PAVIGNLS-------SLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVF--------IGNLPSLEELDLSE 358 (362)
Q Consensus 294 ~~~l~~l~-------~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~--------~~~~~~L~~L~l~~ 358 (362)
+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. +..+++|++|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 33222222 33444445554444444 345677777888877766655532 45567788888888
Q ss_pred CCCC
Q 040025 359 NQLS 362 (362)
Q Consensus 359 n~ls 362 (362)
|.|+
T Consensus 328 N~l~ 331 (457)
T 3bz5_A 328 TELT 331 (457)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 8774
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=220.12 Aligned_cols=255 Identities=24% Similarity=0.290 Sum_probs=214.1
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|+++++.+.+..+. .+.++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..+..+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 5799999999999976665 789999999999999998865 5677999999999999999998655555899999999
Q ss_pred EEcCCCCCCCCcccccCCCchh--hhhcCCCCCEEEcCCcC-CCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLTN--LAEKLTNLETLNLGLVS-IFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLL 228 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 228 (362)
|++++|.+ ..++. .+..+++|++|++++|. +.... +..+..+++|++|++++|.+.+..|..+..++
T Consensus 129 L~L~~n~l---------~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 129 LNLLGNPY---------KTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp EECTTCCC---------SSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred EECCCCCC---------cccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 99999986 33443 57789999999999995 55444 67889999999999999999988899999999
Q ss_pred CCCEEeCCCCCCCccccCcc-cCCCCCCCEEEccCCcCCccCCcccc---CCCCCCEEEccCCcCCC----ccchhhhCC
Q 040025 229 KLIHLDLSQNQLLSGEIPAS-IGNLGSLKELDLSGNILSSKLPASIG---NLSSLKELDLSMNIFSG----EVPAVIGNL 300 (362)
Q Consensus 229 ~L~~L~l~~n~~~~~~l~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l 300 (362)
+|++|++++|... .++.. +..+++|+.|++++|.+++..+..+. ..+.++.+++.++.+++ .+|..+..+
T Consensus 199 ~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 199 NVSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEEEEECSCST--THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cCCeecCCCCccc--cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 9999999999653 34443 34589999999999999876554443 46779999999998885 367788999
Q ss_pred CCCCEEecccCcccccCCcc-ccCCCCCCEEEccCCcCCCCch
Q 040025 301 SSLKALTLVENNFSGDLPAF-IGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 301 ~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
++|+.|++++|.++ .+|.. +..+++|++|+|++|.+.+..|
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999999 56654 5889999999999999998765
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-26 Score=218.19 Aligned_cols=261 Identities=20% Similarity=0.179 Sum_probs=189.2
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.++++|++++|.+++. .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+.+ +| +..+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 4567777777776653 255667777777777766643 2 5666677777777666654 33 566666666
Q ss_pred EEcCCCCCCCCccc---------c----cCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc
Q 040025 152 LDLSGNAYPGGILE---------L----RKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG 218 (362)
Q Consensus 152 L~l~~n~l~~~~~~---------~----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 218 (362)
|++++|.+.+-.+. + ..+.+ .+..+++|++|++++|.+++. + +..+++|+.|++++|.+.+
T Consensus 132 L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp EECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCe
Confidence 66666665431110 0 00111 256788999999999998874 3 7889999999999999986
Q ss_pred cCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCC-------CCCEEEccCCcCCC
Q 040025 219 RIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS-------SLKELDLSMNIFSG 291 (362)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~L~L~~n~l~~ 291 (362)
. .+..+++|+.|++++|.+.. +| +..+++|+.|++++|.+++..+..+..+. +|+.|++++|.+.+
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred e---ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 5 38889999999999996543 55 78899999999999999976544443333 44555556665555
Q ss_pred ccchhhhCCCCCCEEecccCcccccCCc--------cccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 292 EVPAVIGNLSSLKALTLVENNFSGDLPA--------FIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 292 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~--------~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
.+| +..+++|+.|++++|...+.+|. .+..+++|++|++++|++++. + +..+++|++|++++|+|+
T Consensus 279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 279 YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 555 46789999999999987776653 255678999999999999974 3 889999999999999985
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.4e-27 Score=219.59 Aligned_cols=228 Identities=27% Similarity=0.240 Sum_probs=112.4
Q ss_pred CCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCC
Q 040025 123 SRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGN 202 (362)
Q Consensus 123 ~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 202 (362)
++|++|++++|.+.+..|..|..+++|++|++++|.+. ...+..+..+++|++|++++|.++... +..+..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------QIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------CcChhhccCcccCCEEECCCCcCCccC-hhhhcc
Confidence 34555555555555444455555555555555555431 111223444555555555555554433 344455
Q ss_pred CCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 040025 203 LSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 203 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 282 (362)
+++|++|++++|.+....+..+..+++|+.|++++|.....-.+..+..+++|+.|++++|.+++ +| .+..+++|+.|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEE
Confidence 55555555555555443334445555555555555433322112234445555555555555542 22 24445555555
Q ss_pred EccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 283 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+|++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555555544455555555555555555555544444555555555555555555544444444555555555555543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.4e-27 Score=205.86 Aligned_cols=226 Identities=25% Similarity=0.243 Sum_probs=167.4
Q ss_pred CEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCC
Q 040025 101 EWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTN 180 (362)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~ 180 (362)
+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. ...+..+..+++
T Consensus 14 ~~~~c~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------RIDAAAFTGLAL 81 (285)
T ss_dssp CEEECCSSCCSS--CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTT
T ss_pred eEEEcCcCCccc--CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--------eeCHhhcCCccC
Confidence 567888777664 45433 468999999999988776677888999999999988752 122455677888
Q ss_pred CCEEEcCCcC-CCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEE
Q 040025 181 LETLNLGLVS-IFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELD 259 (362)
Q Consensus 181 L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~ 259 (362)
|++|++++|. +.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ...+..+..+++|++|+
T Consensus 82 L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp CCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEE
Confidence 8888888886 65554 667778888888888888887666777777888888888887543 22234467777888888
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 260 LSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 260 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
+++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 88887776555667777888888888888776667777777788888888887776555667777788888888877765
Q ss_pred C
Q 040025 340 E 340 (362)
Q Consensus 340 ~ 340 (362)
.
T Consensus 240 ~ 240 (285)
T 1ozn_A 240 D 240 (285)
T ss_dssp S
T ss_pred C
Confidence 4
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4e-29 Score=224.50 Aligned_cols=258 Identities=21% Similarity=0.206 Sum_probs=195.8
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
.++..+++.+.+...... .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 455566666666543333 455677899999999988764 55678889999999999998876554 7888999999
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCE
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIH 232 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 232 (362)
++++|.+. .++ ..++|++|++++|.+++.. + ..+++|++|++++|.+.+..+..+..+++|++
T Consensus 86 ~Ls~n~l~---------~l~----~~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 86 DLNNNYVQ---------ELL----VGPSIETLHAANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ECCSSEEE---------EEE----ECTTCCEEECCSSCCSEEE-E---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred ECcCCccc---------ccc----CCCCcCEEECCCCccCCcC-c---cccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 99988652 222 3478999999999887654 2 23678999999999888777777888889999
Q ss_pred EeCCCCCCCccccCccc-CCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccC
Q 040025 233 LDLSQNQLLSGEIPASI-GNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVEN 311 (362)
Q Consensus 233 L~l~~n~~~~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 311 (362)
|++++|.+.. ..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|++++|
T Consensus 149 L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 149 LDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp EECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred EECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCC
Confidence 9999886543 334444 4678899999999988754 32 3357889999999998884 5555788889999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCC-CCchhhhcCCCCCCEEeCC
Q 040025 312 NFSGDLPAFIGNLRSLEILDLSLNKFS-GELPVFIGNLPSLEELDLS 357 (362)
Q Consensus 312 ~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~ 357 (362)
.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.++++
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 888 56777888889999999999888 6677777777777776665
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.8e-30 Score=229.97 Aligned_cols=246 Identities=25% Similarity=0.264 Sum_probs=151.0
Q ss_pred cCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcc-cccCchhhc-------CCCCCCEEEcCCCCCCCCccccc
Q 040025 96 NLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF-IGQIPSEIL-------ELSNLVSLDLSGNAYPGGILELR 167 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~ 167 (362)
..++|++|++++|.+ . +|..+... |++|++++|.+ ...+|..+. .+++|++|++++|.+.
T Consensus 41 ~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------- 108 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT------- 108 (312)
T ss_dssp EEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-------
T ss_pred cCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-------
Confidence 344455555555555 1 44433322 55555555555 233444443 4556666666665442
Q ss_pred CCCchhhh--hcCCCCCEEEcCCcCCCCCCCCCCcCCC-----CCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCC
Q 040025 168 KSSLTNLA--EKLTNLETLNLGLVSIFNTPIPHNLGNL-----SSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQL 240 (362)
Q Consensus 168 ~~~~~~~~--~~l~~L~~L~l~~~~~~~~~l~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 240 (362)
+.+|..+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|..
T Consensus 109 -~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 109 -GTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp -SCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred -chhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 1222222 4556666666666665544 3334443 6777777777777666666677777777777777743
Q ss_pred Cccc--cCccc--CCCCCCCEEEccCCcCCc--cC-CccccCCCCCCEEEccCCcCCCccc-hhhhCCCCCCEEecccCc
Q 040025 241 LSGE--IPASI--GNLGSLKELDLSGNILSS--KL-PASIGNLSSLKELDLSMNIFSGEVP-AVIGNLSSLKALTLVENN 312 (362)
Q Consensus 241 ~~~~--l~~~l--~~~~~L~~L~l~~n~l~~--~~-~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 312 (362)
. +. ++..+ ..+++|++|++++|.+++ .+ ...+..+++|++|++++|.+++..| ..+..+++|+.|++++|.
T Consensus 186 ~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 186 L-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp C-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred C-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 2 22 22233 667778888888877763 12 2334566788888888888876553 344556788888888888
Q ss_pred ccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 313 FSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 313 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+|+
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 87 6666554 7788888888888865 55 777888888888888875
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=217.11 Aligned_cols=228 Identities=28% Similarity=0.316 Sum_probs=141.4
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
..++.|+|++|.+.+..+. .+.++++|++|+|++|.+... .+..|.++++|++|++++|.+.+..+..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 3456677777766655544 566677777777777666543 3455666677777777776665444445666677777
Q ss_pred EEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCC
Q 040025 152 LDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKL 230 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 230 (362)
|++++|.+ ..++ ..+..+++|++|++++|.......+..+..+++|++|++++|.+. .+| .+..+++|
T Consensus 141 L~L~~N~i---------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 209 (440)
T 3zyj_A 141 LWLRNNPI---------ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL 209 (440)
T ss_dssp EECCSCCC---------CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC
T ss_pred eeCCCCcc---------cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc
Confidence 77776654 2222 245566667777776644333332445666677777777776665 333 35666667
Q ss_pred CEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEeccc
Q 040025 231 IHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVE 310 (362)
Q Consensus 231 ~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 310 (362)
+.|++++|.+ ++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 210 ~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 210 DELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CEEECCCCcc-CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 7777776643 333355666666777777777776666666666667777777777776655555556666777777776
Q ss_pred Cccc
Q 040025 311 NNFS 314 (362)
Q Consensus 311 n~l~ 314 (362)
|.+.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 6654
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.5e-29 Score=223.68 Aligned_cols=270 Identities=22% Similarity=0.238 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCC------
Q 040025 47 VASWKPAGGNIDCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIA------ 120 (362)
Q Consensus 47 ~~~w~~~~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~------ 120 (362)
...|.. ...|+.+..+.......+++.+++.++.+ ..|. .+... |++|++++|.+....++..+.
T Consensus 21 ~~~~~~---~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~ 91 (312)
T 1wwl_A 21 KPDWSS---AFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRV 91 (312)
T ss_dssp SCCGGG---GGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHH
T ss_pred ccchHH---HhhhhccccEEEEccCCCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHh
Confidence 456765 45666666655443345677888888888 4443 34433 888999999885444666655
Q ss_pred -CCCCCCEEECCCCcccccCchhh--cCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcC-----CCCCEEEcCCcCCC
Q 040025 121 -NLSRLSYLNLSDSFFIGQIPSEI--LELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKL-----TNLETLNLGLVSIF 192 (362)
Q Consensus 121 -~l~~L~~L~l~~~~l~~~~p~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~ 192 (362)
.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. .+|..+..+ ++|++|++++|.+.
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA---------TRDAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS---------SSSSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc---------chhHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 79999999999999998899876 88999999999999863 234555555 99999999999998
Q ss_pred CCCCCCCcCCCCCCcEEEeecccCCcc--CCccc--cCCCCCCEEeCCCCCCCcc-ccC-cccCCCCCCCEEEccCCcCC
Q 040025 193 NTPIPHNLGNLSSLRFLSLNNCLVRGR--IPSSL--GNLLKLIHLDLSQNQLLSG-EIP-ASIGNLGSLKELDLSGNILS 266 (362)
Q Consensus 193 ~~~l~~~~~~~~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~~~~~-~l~-~~l~~~~~L~~L~l~~n~l~ 266 (362)
+.. +..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+... .++ ..+..+++|++|++++|.++
T Consensus 163 ~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 163 NFS-CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred cch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 876 78899999999999999998754 23334 7899999999999965421 222 33457899999999999999
Q ss_pred ccCC-ccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 267 SKLP-ASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 267 ~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
+.+| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|.+++. |. +..+++|++|+|++|.+++.
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8764 45667899999999999999 7777665 8999999999999965 66 88999999999999999863
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=222.02 Aligned_cols=142 Identities=26% Similarity=0.328 Sum_probs=122.6
Q ss_pred cCCCCCCcEEEeecccCCccCC-ccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCC-ccCCccccCCC
Q 040025 200 LGNLSSLRFLSLNNCLVRGRIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILS-SKLPASIGNLS 277 (362)
Q Consensus 200 ~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~l~ 277 (362)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.. .+..+..+..+++|++|++++|.+. +.+|..+..++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-cccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 5566777777777777765544 4577888999999999854 4556778889999999999999997 57888999999
Q ss_pred CCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCch
Q 040025 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
+|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999999998889999999999999999999998888888999999999999999998765
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1e-25 Score=220.64 Aligned_cols=131 Identities=27% Similarity=0.320 Sum_probs=114.6
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhh
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAE 176 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~ 176 (362)
+.+++|+|++|.++.. .+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|++ ..++ ..+.
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---------~~l~~~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---------QSLALGAFS 121 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------CEECGGGGT
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---------CCCCHHHhc
Confidence 4799999999999864 456799999999999999999877778899999999999999986 4444 4678
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc-cCCccccCCCCCCEEeCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG-RIPSSLGNLLKLIHLDLSQNQ 239 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~ 239 (362)
.+++|++|++++|.+++.. +..++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 9999999999999998876 6779999999999999999865 467788899999999998875
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.2e-27 Score=224.05 Aligned_cols=238 Identities=22% Similarity=0.217 Sum_probs=178.6
Q ss_pred ccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhh
Q 040025 95 FNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNL 174 (362)
Q Consensus 95 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 174 (362)
..+++|++|+|++|.+.+. .+..|..+++|++|++++|.+.+..| +..+++|++|++++|.+. .++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~---------~l~-- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ---------ELL-- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE---------EEE--
T ss_pred ccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC---------CCC--
Confidence 3455888888888888764 56678888888888888888876555 778888888888888642 222
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccC-CCC
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIG-NLG 253 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~-~~~ 253 (362)
..++|++|++++|.+++.. + ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+ ++..|..+. .++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSD 169 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEE-E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC-CEEEGGGGGGGTT
T ss_pred --CCCCcCEEECcCCcCCCCC-c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC-CCcChHHHhhhCC
Confidence 2378888888888887654 2 2457888888888888877777788888888888888854 344455554 678
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEcc
Q 040025 254 SLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLS 333 (362)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~ 333 (362)
+|+.|++++|.+++..+ ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred cccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcC
Confidence 88888888888876532 3357888888888888885 4445778888888888888888 467777788888888888
Q ss_pred CCcCC-CCchhhhcCCCCCCEEeCC
Q 040025 334 LNKFS-GELPVFIGNLPSLEELDLS 357 (362)
Q Consensus 334 ~n~l~-~~~~~~~~~~~~L~~L~l~ 357 (362)
+|.+. +.+|..+..++.|+.+++.
T Consensus 246 ~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcCcchHHHHHhCCCCcEEecc
Confidence 88887 5566777777666665553
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2e-25 Score=216.29 Aligned_cols=263 Identities=25% Similarity=0.254 Sum_probs=178.8
Q ss_pred CCCCCCCCCCCCCccccceEe------cCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCC
Q 040025 47 VASWKPAGGNIDCCSWDGVEC------NENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIA 120 (362)
Q Consensus 47 ~~~w~~~~~~~~~c~~~~v~c------~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 120 (362)
...|.. ..++|.|.+..+ .-....++.|++++++++ .+|. .+. ++|++|++++|.++. +|.
T Consensus 12 w~~W~~---~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~--- 78 (622)
T 3g06_A 12 WSAWRR---AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA--- 78 (622)
T ss_dssp HHHHHH---TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---
T ss_pred HHHHHh---cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---
Confidence 345765 567888865322 111134788899988887 4444 333 788889998888774 454
Q ss_pred CCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCc
Q 040025 121 NLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNL 200 (362)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 200 (362)
.+++|++|++++|.+. .+|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++... .
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~---------l~~---~l~~L~~L~L~~N~l~~lp--~-- 138 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH---------LPA---LPSGLCKLWIFGNQLTSLP--V-- 138 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC---------CCC---CCTTCCEEECCSSCCSCCC--C--
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC---------CCC---CCCCcCEEECCCCCCCcCC--C--
Confidence 5688888888888876 4555 66888888888887632 222 3455666666666555432 2
Q ss_pred CCCCCCcEEEeecccCCccCCccc-----------------cCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCC
Q 040025 201 GNLSSLRFLSLNNCLVRGRIPSSL-----------------GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGN 263 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n 263 (362)
.+++|++|++++|.+.+ +|..+ ..+++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 139 -~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~--~l~~---~~~~L~~L~L~~N 211 (622)
T 3g06_A 139 -LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA--SLPT---LPSELYKLWAYNN 211 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSS
T ss_pred -CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC--CCCC---ccchhhEEECcCC
Confidence 12555555555555542 22111 22366667777766442 2333 2356777777777
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchh
Q 040025 264 ILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPV 343 (362)
Q Consensus 264 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~ 343 (362)
.++ .+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|++|.++ .+|.
T Consensus 212 ~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 212 RLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp CCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 766 3333 24789999999999885 55 45689999999999988 5665 5689999999999999 7888
Q ss_pred hhcCCCCCCEEeCCCCCCC
Q 040025 344 FIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 344 ~~~~~~~L~~L~l~~n~ls 362 (362)
.+..+++|+.|+|++|+|+
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 9999999999999999985
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.2e-28 Score=232.69 Aligned_cols=284 Identities=24% Similarity=0.214 Sum_probs=169.5
Q ss_pred cEEEEEcCCCCCcc----ccCCccccccCCCCCEEEcCCCCCCCCCC---Ccc-CCCCCCCCEEECCCCccccc----Cc
Q 040025 73 HVFKLDLSNSCLQG----SINSSSGLFNLIHLEWLNLAGNDFRYSEI---PPG-IANLSRLSYLNLSDSFFIGQ----IP 140 (362)
Q Consensus 73 ~v~~L~l~~~~l~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~-l~~l~~L~~L~l~~~~l~~~----~p 140 (362)
++++|++++|.+.. .++. .+..+++|++|++++|.+..... ... ....++|++|++++|.+.+. ++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS--TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH--HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH--HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 35555555555442 2222 44455555555555554432100 001 12234555555555554432 23
Q ss_pred hhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhh-hcCCCCCEEEcCCcCCCCCC---CCCCcCCCCCCcEEEeecccC
Q 040025 141 SEILELSNLVSLDLSGNAYPGGILELRKSSLTNLA-EKLTNLETLNLGLVSIFNTP---IPHNLGNLSSLRFLSLNNCLV 216 (362)
Q Consensus 141 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~n~l 216 (362)
..+..+++|++|++++|.+.+... ..+...+ ...++|++|++++|.+++.. ++..+..+++|++|++++|.+
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 344445566666666554321000 0111111 12456777777777666542 234455677788888877776
Q ss_pred CccC-----CccccCCCCCCEEeCCCCCCCccc---cCcccCCCCCCCEEEccCCcCCccCCcccc-----CCCCCCEEE
Q 040025 217 RGRI-----PSSLGNLLKLIHLDLSQNQLLSGE---IPASIGNLGSLKELDLSGNILSSKLPASIG-----NLSSLKELD 283 (362)
Q Consensus 217 ~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~---l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~ 283 (362)
.+.. +.....+++|++|++++|.+.... ++..+..+++|++|++++|.+.+..+..+. ..++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 5432 112234677888888887543321 455566678888888888877654333332 236888888
Q ss_pred ccCCcCCCc----cchhhhCCCCCCEEecccCcccccCCccccC-----CCCCCEEEccCCcCCC----CchhhhcCCCC
Q 040025 284 LSMNIFSGE----VPAVIGNLSSLKALTLVENNFSGDLPAFIGN-----LRSLEILDLSLNKFSG----ELPVFIGNLPS 350 (362)
Q Consensus 284 L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l~~----~~~~~~~~~~~ 350 (362)
+++|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.+++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 888888754 4556677789999999999887655544432 6789999999999886 67888888999
Q ss_pred CCEEeCCCCCCC
Q 040025 351 LEELDLSENQLS 362 (362)
Q Consensus 351 L~~L~l~~n~ls 362 (362)
|++|++++|+|+
T Consensus 400 L~~L~l~~N~i~ 411 (461)
T 1z7x_W 400 LRELDLSNNCLG 411 (461)
T ss_dssp CCEEECCSSSCC
T ss_pred ccEEECCCCCCC
Confidence 999999999875
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-27 Score=210.19 Aligned_cols=238 Identities=18% Similarity=0.141 Sum_probs=193.6
Q ss_pred CCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCC
Q 040025 100 LEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLT 179 (362)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~ 179 (362)
++..+++.+.+... ....+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. ..+. +..++
T Consensus 12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~-~~~l~ 80 (317)
T 3o53_A 12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------ETLD-LESLS 80 (317)
T ss_dssp EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE---------EEEE-ETTCT
T ss_pred eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC---------cchh-hhhcC
Confidence 34445555554322 2344567789999999999998888889999999999999999762 2222 77899
Q ss_pred CCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEE
Q 040025 180 NLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELD 259 (362)
Q Consensus 180 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~ 259 (362)
+|++|++++|.+++.. ..++|++|++++|.+.+..+. .+++|+.|++++|.+. +..+..+..+++|++|+
T Consensus 81 ~L~~L~Ls~n~l~~l~------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 81 TLRTLDLNNNYVQELL------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TCCEEECCSSEEEEEE------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEE
T ss_pred CCCEEECcCCcccccc------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEE
Confidence 9999999999886543 348999999999999865443 4678999999999654 34455778899999999
Q ss_pred ccCCcCCccCCccc-cCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCC
Q 040025 260 LSGNILSSKLPASI-GNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 260 l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 338 (362)
+++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++ +|..+..+++|++|++++|.++
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 99999998777766 4789999999999999854 33 3358999999999999995 5555888999999999999999
Q ss_pred CCchhhhcCCCCCCEEeCCCCCCC
Q 040025 339 GELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 339 ~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
.+|..+..+++|++|++++|+++
T Consensus 228 -~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 -LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -EECTTCCCCTTCCEEECTTCCCB
T ss_pred -chhhHhhcCCCCCEEEccCCCcc
Confidence 57888999999999999999974
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=5.5e-28 Score=228.15 Aligned_cols=285 Identities=19% Similarity=0.160 Sum_probs=209.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCC----CCCEEEcCCCCCCCC---CCCccCCCCCCCCEEECCCCcccccCchhhc
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLI----HLEWLNLAGNDFRYS---EIPPGIANLSRLSYLNLSDSFFIGQIPSEIL 144 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~ 144 (362)
.++++|++++|.+.+..+. .....++ +|++|++++|.+... .++..+..+++|++|++++|.+.+..+..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVH-CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp TTCCEEECTTCCCHHHHHH-HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHH-HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 5688999999888653222 0122344 699999999987742 2467788899999999999987654444333
Q ss_pred -----CCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcC-----CCCCCcEEEeecc
Q 040025 145 -----ELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLG-----NLSSLRFLSLNNC 214 (362)
Q Consensus 145 -----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-----~~~~L~~L~l~~n 214 (362)
..++|++|++++|.+.+... ..++..+..+++|++|++++|.+.+.. ...+. ..++|++|++++|
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASC----EPLASVLRAKPDFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGH----HHHHHHHHHCTTCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHhcCCCcceEEECCCCCCCHHHH----HHHHHHHhhCCCCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCC
Confidence 25679999999997643211 235667778899999999999886544 22222 3569999999999
Q ss_pred cCCcc----CCccccCCCCCCEEeCCCCCCCcccc----CcccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEE
Q 040025 215 LVRGR----IPSSLGNLLKLIHLDLSQNQLLSGEI----PASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKEL 282 (362)
Q Consensus 215 ~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~l----~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L 282 (362)
.+.+. ++..+..+++|+.|++++|.+....+ +..+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 88753 46667788999999999996533211 22234688999999999998864 56667778999999
Q ss_pred EccCCcCCCccchhhh-----CCCCCCEEecccCccccc----CCccccCCCCCCEEEccCCcCCCCchhhhcC-----C
Q 040025 283 DLSMNIFSGEVPAVIG-----NLSSLKALTLVENNFSGD----LPAFIGNLRSLEILDLSLNKFSGELPVFIGN-----L 348 (362)
Q Consensus 283 ~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----~ 348 (362)
++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 9999998765444443 236999999999998865 4566777899999999999998765555543 6
Q ss_pred CCCCEEeCCCCCCC
Q 040025 349 PSLEELDLSENQLS 362 (362)
Q Consensus 349 ~~L~~L~l~~n~ls 362 (362)
++|++|++++|.++
T Consensus 370 ~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 370 SVLRVLWLADCDVS 383 (461)
T ss_dssp CCCCEEECTTSCCC
T ss_pred CceEEEECCCCCCC
Confidence 79999999999875
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.4e-24 Score=203.95 Aligned_cols=247 Identities=26% Similarity=0.391 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
++++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|..+ ++|++|++++|.+.+ +| .+..+++|++|
T Consensus 132 ~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp TCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 44555555555443 22 24555555555555555443 23221 355555555555543 34 35556666666
Q ss_pred EcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCE
Q 040025 153 DLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIH 232 (362)
Q Consensus 153 ~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 232 (362)
++++|.+.+ +|.. .++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ +|. .+++|+.
T Consensus 201 ~l~~N~l~~---------l~~~---~~~L~~L~l~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~ 261 (454)
T 1jl5_A 201 YADNNSLKK---------LPDL---PLSLESIVAGNNILEE--LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEA 261 (454)
T ss_dssp ECCSSCCSS---------CCCC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCE
T ss_pred ECCCCcCCc---------CCCC---cCcccEEECcCCcCCc--cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCE
Confidence 666665421 1111 1355555555555542 13 25566666666666666553 222 1245555
Q ss_pred EeCCCCCCCccccCcccCCCCCCCEEEccCCcCCc--cCCcc-------------ccCC-CCCCEEEccCCcCCCccchh
Q 040025 233 LDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSS--KLPAS-------------IGNL-SSLKELDLSMNIFSGEVPAV 296 (362)
Q Consensus 233 L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~-------------l~~l-~~L~~L~L~~n~l~~~~~~~ 296 (362)
|++++|.+.. +|.. +++|+.|++++|.+++ .+|.. +..+ ++|++|++++|++++ +|..
T Consensus 262 L~l~~N~l~~--l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 262 LNVRDNYLTD--LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp EECCSSCCSC--CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC
T ss_pred EECCCCcccc--cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc
Confidence 5555553321 2321 2445555555555443 11111 1112 467777777777774 4442
Q ss_pred hhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC--CchhhhcCC-------------CCCCEEeCCCCCC
Q 040025 297 IGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG--ELPVFIGNL-------------PSLEELDLSENQL 361 (362)
Q Consensus 297 l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~l 361 (362)
+++|+.|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+ ++|++|++++|++
T Consensus 336 ---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 336 ---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp ---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred ---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 477888888888877 4665 36788888888888887 677777666 7888888888876
Q ss_pred C
Q 040025 362 S 362 (362)
Q Consensus 362 s 362 (362)
+
T Consensus 409 ~ 409 (454)
T 1jl5_A 409 R 409 (454)
T ss_dssp -
T ss_pred C
Confidence 4
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-24 Score=190.20 Aligned_cols=216 Identities=26% Similarity=0.313 Sum_probs=134.8
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCccc
Q 040025 57 IDCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFI 136 (362)
Q Consensus 57 ~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 136 (362)
.++|.|.|+.|.-. +.++.+++++++++. +|. .+ .+++++|++++|.+... .+..|.++++|++|++++|.+.
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NI--PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CC--CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 37899999988532 346689999988874 343 22 26789999999888764 4457888899999999888887
Q ss_pred ccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeeccc
Q 040025 137 GQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCL 215 (362)
Q Consensus 137 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 215 (362)
...+..+..+++|++|++++|.+. .++ ..+..+++|++|++++|.++... +..+..+++|++|++++|.
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQ---------ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCC---------CCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred eeChhhhcCCCCCCEEECCCCcCC---------cCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCc
Confidence 544455677888888888888652 222 23455666666666666666554 4555666666666666666
Q ss_pred CCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCC
Q 040025 216 VRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS 290 (362)
Q Consensus 216 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 290 (362)
+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 554444445555555555555553322 11223445555555555555555444444455555555555555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.5e-26 Score=213.93 Aligned_cols=219 Identities=20% Similarity=0.143 Sum_probs=186.5
Q ss_pred CCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCC
Q 040025 120 ANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHN 199 (362)
Q Consensus 120 ~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~ 199 (362)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+. ..+. +..+++|++|++++|.+++..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~~~~-l~~l~~L~~L~Ls~N~l~~l~---- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---------ETLD-LESLSTLRTLDLNNNYVQELL---- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---------EEEE-CTTCTTCCEEECCSSEEEEEE----
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---------CCcc-cccCCCCCEEEecCCcCCCCC----
Confidence 34558999999999999888889999999999999999762 2222 778999999999999987643
Q ss_pred cCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCcccc-CCCC
Q 040025 200 LGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIG-NLSS 278 (362)
Q Consensus 200 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~ 278 (362)
..++|++|++++|.+.+..+. .+++|+.|++++|.+ ++..|..+..+++|+.|++++|.+++.+|..+. .+++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 238999999999999866543 468899999999955 445577788899999999999999988888776 7999
Q ss_pred CCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCC
Q 040025 279 LKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSE 358 (362)
Q Consensus 279 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 358 (362)
|+.|+|++|.+++. +. ...+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus 171 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 171 LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred ccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 99999999999965 33 34689999999999999964 4458889999999999999995 788899999999999999
Q ss_pred CCCC
Q 040025 359 NQLS 362 (362)
Q Consensus 359 n~ls 362 (362)
|+++
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 9874
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.5e-24 Score=190.88 Aligned_cols=207 Identities=25% Similarity=0.270 Sum_probs=129.6
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhc
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 177 (362)
++|++|++++|.+... .+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--------LALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTTTTTT
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--------cChhhhcC
Confidence 4688888888877654 34467788888888888888776666677778888888888886521 12234566
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCcc-CCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCC
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGR-IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLK 256 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~ 256 (362)
+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+.. ..+..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~ 176 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMP 176 (276)
T ss_dssp CTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCT
T ss_pred CccccEEECCCCCccccC-chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhcc
Confidence 777777777777776654 44566677777777777766542 45666666667777776664322 2233343333343
Q ss_pred ----EEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCccccc
Q 040025 257 ----ELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316 (362)
Q Consensus 257 ----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 316 (362)
.|++++|.+.+..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 666666666644333332 33566666666666644444455566666666666666543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.4e-24 Score=191.00 Aligned_cols=225 Identities=25% Similarity=0.242 Sum_probs=170.6
Q ss_pred EEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhhcCCCC
Q 040025 103 LNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAEKLTNL 181 (362)
Q Consensus 103 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L 181 (362)
++..+..+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+. .++ ..+..+++|
T Consensus 12 ~~c~~~~l~~--ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L 78 (276)
T 2z62_A 12 YQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSHL 78 (276)
T ss_dssp EECTTSCCSS--CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC---------EECTTTTTTCTTC
T ss_pred EEecCCCccc--cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC---------ccCHHHccCCcCC
Confidence 4444444432 555443 57999999999988777778889999999999999762 232 356778899
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEcc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLS 261 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~ 261 (362)
++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+|..+..+++|++|+++
T Consensus 79 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 79 STLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 99999999887765 67788889999999998888866666688888889999888866544567778888888888888
Q ss_pred CCcCCccCCccccCCCCCC----EEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcC
Q 040025 262 GNILSSKLPASIGNLSSLK----ELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337 (362)
Q Consensus 262 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 337 (362)
+|++++..+..+..+++|+ .|++++|.+++..+.. ....+|+.|++++|.+++..+..+..+++|++|+|++|.+
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 8888876666666655555 7888888888544433 3445788888888888865556667788888888888888
Q ss_pred CCCch
Q 040025 338 SGELP 342 (362)
Q Consensus 338 ~~~~~ 342 (362)
.+..+
T Consensus 237 ~c~c~ 241 (276)
T 2z62_A 237 DCSCP 241 (276)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 86543
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=5e-27 Score=212.49 Aligned_cols=270 Identities=20% Similarity=0.229 Sum_probs=212.7
Q ss_pred CCccccceEecCCCCcEEEEEcCCCCCccccCCccccccC--CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcc
Q 040025 58 DCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNL--IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135 (362)
Q Consensus 58 ~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 135 (362)
-|..|.++.++ +..++.++++++.+.. . .+..+ +.++.|++++|.+.+. +..+.++++|++|++++|.+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHhcC--chhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCCc
Confidence 35578888775 3457899999987762 2 46666 8999999999988764 33466899999999999998
Q ss_pred ccc-CchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCc-CCCCCCCCCCcCCCCCCcEEEeec
Q 040025 136 IGQ-IPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLV-SIFNTPIPHNLGNLSSLRFLSLNN 213 (362)
Q Consensus 136 ~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~ 213 (362)
.+. +|..+..+++|++|++++|.+. ...+..+..+++|++|++++| .+++..++..+..+++|++|++++
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccC--------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 765 8888999999999999999652 345667788999999999999 677654466688899999999999
Q ss_pred c-cCCcc-CCccccCCC-CCCEEeCCCCC--CCccccCcccCCCCCCCEEEccCCc-CCccCCccccCCCCCCEEEccCC
Q 040025 214 C-LVRGR-IPSSLGNLL-KLIHLDLSQNQ--LLSGEIPASIGNLGSLKELDLSGNI-LSSKLPASIGNLSSLKELDLSMN 287 (362)
Q Consensus 214 n-~l~~~-~~~~~~~~~-~L~~L~l~~n~--~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n 287 (362)
| .+.+. ++..+..++ +|++|++++|. .....++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 9 88754 566688899 99999999993 4335567777889999999999998 77777778899999999999999
Q ss_pred c-CCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcC
Q 040025 288 I-FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN 347 (362)
Q Consensus 288 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 347 (362)
. +.......+..+++|+.|++++| +.......+. ..++.|++++|.+++..|..++.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 4 44333346788999999999999 5433322222 24667779999999988877654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.5e-24 Score=186.59 Aligned_cols=203 Identities=27% Similarity=0.290 Sum_probs=139.9
Q ss_pred CCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCC
Q 040025 124 RLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGN 202 (362)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 202 (362)
+.++++++++.++ .+|..+. ++|++|++++|.+. .++ ..+..+++|++|++++|.++... +..+..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS---------SLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKE 83 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS---------CCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSS
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC---------eeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcC
Confidence 5778888888776 4665443 57888888888652 222 34566778888888887777554 555677
Q ss_pred CCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 040025 203 LSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 203 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 282 (362)
+++|++|++++|.+.+..+..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 778888888877777555556677777777777777443 2334456677777777777777776555556777777777
Q ss_pred EccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 283 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+...
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7777777755555566777777777777777755555566677777777777776543
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.7e-23 Score=195.26 Aligned_cols=223 Identities=29% Similarity=0.388 Sum_probs=116.4
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcC
Q 040025 99 HLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKL 178 (362)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l 178 (362)
+|++|++++|.+.+ +| .++.+++|++|++++|.+.+ +|..+ ++|++|++++|.+ ..+| .+..+
T Consensus 132 ~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l---------~~l~-~~~~l 194 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQL---------EELP-ELQNL 194 (454)
T ss_dssp TCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCC---------SSCC-CCTTC
T ss_pred CCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcC---------CcCc-cccCC
Confidence 44444444444432 23 24444444444444444432 33211 2444444444433 1222 24555
Q ss_pred CCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEE
Q 040025 179 TNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKEL 258 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L 258 (362)
++|++|++++|.+++. +.. .++|++|++++|.+. .+|. +..+++|++|++++|.+.. +|.. +++|+.|
T Consensus 195 ~~L~~L~l~~N~l~~l--~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L 262 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKL--PDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT--LPDL---PPSLEAL 262 (454)
T ss_dssp TTCCEEECCSSCCSSC--CCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS--CCSC---CTTCCEE
T ss_pred CCCCEEECCCCcCCcC--CCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc--cccc---ccccCEE
Confidence 6666666666655542 111 135666666666655 4443 5666666677766664322 3332 3566777
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCCC--ccchhhh-------------CC-CCCCEEecccCcccccCCcccc
Q 040025 259 DLSGNILSSKLPASIGNLSSLKELDLSMNIFSG--EVPAVIG-------------NL-SSLKALTLVENNFSGDLPAFIG 322 (362)
Q Consensus 259 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~-------------~l-~~L~~L~L~~n~l~~~~~~~l~ 322 (362)
++++|.+.+ +|.. +++|++|++++|.+++ ..|..+. .+ ++|+.|++++|.+.+ +|..
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~-- 335 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL-- 335 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC--
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc--
Confidence 777776664 3332 3566677777766664 2221111 11 356666666666653 4432
Q ss_pred CCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 323 NLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 323 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+++|++|++++|.++ .+|. .+++|++|++++|+++
T Consensus 336 -~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 336 -PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp -CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred -CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence 466777777777777 3554 3577788888877764
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=3.2e-26 Score=211.24 Aligned_cols=246 Identities=25% Similarity=0.299 Sum_probs=181.7
Q ss_pred ccccCCCCCEEEcCCCCCCCCC---CCccCCCCCCCCEEECCCCc---ccccCchhh-------cCCCCCCEEEcCCCCC
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSE---IPPGIANLSRLSYLNLSDSF---FIGQIPSEI-------LELSNLVSLDLSGNAY 159 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~---l~~~~p~~l-------~~l~~L~~L~l~~n~l 159 (362)
.+..+++|++|++++|.+.... ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 6778899999999999876531 23447789999999999863 445666555 6789999999999987
Q ss_pred CCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC---CCCCcCCC---------CCCcEEEeecccCC-ccCC---cc
Q 040025 160 PGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP---IPHNLGNL---------SSLRFLSLNNCLVR-GRIP---SS 223 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~~---------~~L~~L~l~~n~l~-~~~~---~~ 223 (362)
.+... ..++..+..+++|++|++++|.+++.. ++..+..+ ++|++|++++|.+. +.++ ..
T Consensus 107 ~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 107 GPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 43221 246777888999999999999886433 12223333 88999999998886 3333 35
Q ss_pred ccCCCCCCEEeCCCCCCCccc----cCcccCCCCCCCEEEccCCcCC----ccCCccccCCCCCCEEEccCCcCCCc---
Q 040025 224 LGNLLKLIHLDLSQNQLLSGE----IPASIGNLGSLKELDLSGNILS----SKLPASIGNLSSLKELDLSMNIFSGE--- 292 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~----l~~~l~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~--- 292 (362)
+..+++|+.|++++|.+.... .+..+..+++|++|++++|.++ ..++..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 667888999999988654221 2336777888999999998885 45677788888899999999888855
Q ss_pred -cchhhhC--CCCCCEEecccCcccc----cCCccc-cCCCCCCEEEccCCcCCCCch
Q 040025 293 -VPAVIGN--LSSLKALTLVENNFSG----DLPAFI-GNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 293 -~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~l-~~~~~L~~L~L~~n~l~~~~~ 342 (362)
++..+.. +++|+.|+|++|.+++ .+|..+ ..+++|++|++++|.+++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4555533 7889999999988887 467666 557889999999998887664
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.7e-24 Score=188.24 Aligned_cols=204 Identities=24% Similarity=0.245 Sum_probs=143.6
Q ss_pred CCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCC
Q 040025 119 IANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPH 198 (362)
Q Consensus 119 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 198 (362)
+++++++++++++++.+. .+|..+. ++++.|++++|.+. ...+..+..+++|++|++++|.+++.. +
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~-~- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY--------TFSLATLMPYTRLTQLNLDRAELTKLQ-V- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS--------EEEGGGGTTCTTCCEEECTTSCCCEEE-C-
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC--------ccCHHHhhcCCCCCEEECCCCccCccc-C-
Confidence 567888899999888875 5665553 67888888888752 222445677888888888888876543 2
Q ss_pred CcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC
Q 040025 199 NLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS 278 (362)
Q Consensus 199 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 278 (362)
...+++|++|++++|.+. .+|..+..+++|++|++++|.+. .-.+..+..+++|++|++++|++++..+..+..+++
T Consensus 73 -~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 -DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp -CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred -CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 266778888888888776 55666677777777777777543 222355677777777777777777666666677777
Q ss_pred CCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 279 LKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 279 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+....+|+.|+|++|.+..
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 777777777777544445566777777777777777 566666666777777777776654
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=6.5e-24 Score=186.29 Aligned_cols=210 Identities=28% Similarity=0.305 Sum_probs=131.8
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
....+++|+.|+++++.+.. ...+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+. ...+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~--------~~~~ 102 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ--------SLPN 102 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC--------CCCT
T ss_pred ccccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC--------ccCh
Confidence 35567777888887776653 2346677777777777777654 3 35667777777777777652 1122
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l 180 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL 180 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred hHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCC
Confidence 33456677777777777766554 455666677777777777666555555566666777777666432 2223345566
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCC
Q 040025 253 GSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNL 324 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~ 324 (362)
++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|++..|.+.|.+|..++.+
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 6666666666666665555566666666666666665532 3456666666666666666655543
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.2e-25 Score=207.36 Aligned_cols=243 Identities=19% Similarity=0.194 Sum_probs=123.7
Q ss_pred CCccCCCCCCCCEEECCCCcccccCc----hhhcCCCCCCEEEcCCCCCCCCcccccCCCchh-------hhhcCCCCCE
Q 040025 115 IPPGIANLSRLSYLNLSDSFFIGQIP----SEILELSNLVSLDLSGNAYPGGILELRKSSLTN-------LAEKLTNLET 183 (362)
Q Consensus 115 ~~~~l~~l~~L~~L~l~~~~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-------~~~~l~~L~~ 183 (362)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. +. +.+|. .+..+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--l~---~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--VK---DEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS--CG---GGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc--cc---cchhHHHHHHHHHHhhCCcccE
Confidence 33444555666666666665544322 234455666666666553311 00 11222 2245566666
Q ss_pred EEcCCcCCCCCC---CCCCcCCCCCCcEEEeecccCCccCCcc----ccCC---------CCCCEEeCCCCCCCccccC-
Q 040025 184 LNLGLVSIFNTP---IPHNLGNLSSLRFLSLNNCLVRGRIPSS----LGNL---------LKLIHLDLSQNQLLSGEIP- 246 (362)
Q Consensus 184 L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~~---------~~L~~L~l~~n~~~~~~l~- 246 (362)
|++++|.+.+.. ++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+....++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 666666655431 1334455566666666666554322222 2222 5666666666644323333
Q ss_pred --cccCCCCCCCEEEccCCcCCc-----cCCccccCCCCCCEEEccCCcCC----CccchhhhCCCCCCEEecccCcccc
Q 040025 247 --ASIGNLGSLKELDLSGNILSS-----KLPASIGNLSSLKELDLSMNIFS----GEVPAVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 247 --~~l~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~ 315 (362)
..+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 234455566666666665542 12224555566666666666654 3345555556666666666666554
Q ss_pred c----CCcccc--CCCCCCEEEccCCcCCC----Cchhhh-cCCCCCCEEeCCCCCCC
Q 040025 316 D----LPAFIG--NLRSLEILDLSLNKFSG----ELPVFI-GNLPSLEELDLSENQLS 362 (362)
Q Consensus 316 ~----~~~~l~--~~~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~ls 362 (362)
. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3 333332 25566666666666654 255544 34566666666666553
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-23 Score=183.95 Aligned_cols=228 Identities=25% Similarity=0.254 Sum_probs=176.4
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhc
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 177 (362)
..+..+.+..+.+... ..+..+++|+.|+++++.+. .+ ..+..+++|++|++++|.+. .++ .+..
T Consensus 19 ~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~---------~~~-~l~~ 83 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLH---------DIS-ALKE 83 (272)
T ss_dssp HHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCC---------CCG-GGTT
T ss_pred HHHHHHHhcCcccccc---cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCC---------Cch-hhcC
Confidence 3444455655554422 33557888999999988865 33 34778899999999998763 222 5678
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCE
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKE 257 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~ 257 (362)
+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+ ++..+..+..+++|+.
T Consensus 84 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTE 161 (272)
T ss_dssp CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCE
Confidence 889999999999888765 66678889999999999998877776788889999999998854 3333455678889999
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcC
Q 040025 258 LDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKF 337 (362)
Q Consensus 258 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 337 (362)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.|++..|.+
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 9999999887777777888999999999999987777777888999999999987764 355788888888999
Q ss_pred CCCchhhhcCCC
Q 040025 338 SGELPVFIGNLP 349 (362)
Q Consensus 338 ~~~~~~~~~~~~ 349 (362)
+|.+|..++.++
T Consensus 235 ~g~ip~~~~~~~ 246 (272)
T 3rfs_A 235 SGVVRNSAGSVA 246 (272)
T ss_dssp GGGBBCTTSCBC
T ss_pred CCcccCcccccC
Confidence 888888776654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=8.9e-24 Score=189.02 Aligned_cols=225 Identities=22% Similarity=0.231 Sum_probs=140.9
Q ss_pred CCCEEECCCCcccccC-ch--hhcCCCCCCEEEcCCCCCCCCcccccCCCchhhh--hcCCCCCEEEcCCcCCCCCCC--
Q 040025 124 RLSYLNLSDSFFIGQI-PS--EILELSNLVSLDLSGNAYPGGILELRKSSLTNLA--EKLTNLETLNLGLVSIFNTPI-- 196 (362)
Q Consensus 124 ~L~~L~l~~~~l~~~~-p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~l-- 196 (362)
.++.+.+.++.+.... .. .+..+++|++|++++|.+. +..+..+ ..+++|++|++++|.+++...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--------~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT--------GTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB--------SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec--------cchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4555666555443211 00 1112345666666666542 1222222 456666666666666654320
Q ss_pred -CCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCcc-cc--CcccCCCCCCCEEEccCCcCCccCCc-
Q 040025 197 -PHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSG-EI--PASIGNLGSLKELDLSGNILSSKLPA- 271 (362)
Q Consensus 197 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~l--~~~l~~~~~L~~L~l~~n~l~~~~~~- 271 (362)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+ +..+..+++|++|++++|+++. ++.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 215 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGV 215 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHH
Confidence 02234567777777777777766666777777777777777754321 01 2223567778888888887762 222
Q ss_pred ---cccCCCCCCEEEccCCcCCCccchhhhCC---CCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhh
Q 040025 272 ---SIGNLSSLKELDLSMNIFSGEVPAVIGNL---SSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFI 345 (362)
Q Consensus 272 ---~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 345 (362)
.+..+++|++|+|++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~ 290 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-P 290 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-T
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-h
Confidence 24567788888888888886666666555 68888888888887 6666553 6888888888888853 33 5
Q ss_pred cCCCCCCEEeCCCCCCC
Q 040025 346 GNLPSLEELDLSENQLS 362 (362)
Q Consensus 346 ~~~~~L~~L~l~~n~ls 362 (362)
..+++|++|++++|+|+
T Consensus 291 ~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TSCCCCSCEECSSTTTS
T ss_pred hhCCCccEEECcCCCCC
Confidence 67788888888888875
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=2.2e-25 Score=201.69 Aligned_cols=249 Identities=19% Similarity=0.251 Sum_probs=197.1
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCC--CCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhh
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANL--SRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLA 175 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 175 (362)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+ ..++..+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-------~~~~~~~ 114 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV-------STLHGIL 114 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-------HHHHHHH
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-------HHHHHHH
Confidence 34889999988764 3456666 8999999999998776655 6679999999999996421 2377788
Q ss_pred hcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc-cCCcc-CCccccCCCCCCEEeCCCC-CCCccccCcccCCC
Q 040025 176 EKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC-LVRGR-IPSSLGNLLKLIHLDLSQN-QLLSGEIPASIGNL 252 (362)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~l~~~l~~~ 252 (362)
..+++|++|++++|.+++.. +..+..+++|++|++++| .+.+. ++..+..+++|++|++++| .+....++..+..+
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 89999999999999987665 667888999999999999 56653 5666888999999999999 65443467777889
Q ss_pred C-CCCEEEccCC--cCC-ccCCccccCCCCCCEEEccCCc-CCCccchhhhCCCCCCEEecccCc-ccccCCccccCCCC
Q 040025 253 G-SLKELDLSGN--ILS-SKLPASIGNLSSLKELDLSMNI-FSGEVPAVIGNLSSLKALTLVENN-FSGDLPAFIGNLRS 326 (362)
Q Consensus 253 ~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~ 326 (362)
+ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 9999999999 555 4566777889999999999999 777778888999999999999994 44333346788999
Q ss_pred CCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCCC
Q 040025 327 LEILDLSLNKFSGELPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 327 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ls 362 (362)
|++|++++| ++......+. ..++.|++++|.|+
T Consensus 274 L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 274 LKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp CCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred CCEEeccCc-cCHHHHHHHH--hhCcceEEecccCc
Confidence 999999999 6654444443 23455567888774
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.6e-22 Score=178.89 Aligned_cols=204 Identities=20% Similarity=0.198 Sum_probs=142.8
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
.+.+++++++++++++.++. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+. .++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~ 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---------KLQ 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---------EEE
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC---------ccc
Confidence 45667777777777776653 454443 57777777777777666667777777777777777652 222
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
.. ..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .-.+..+..+
T Consensus 72 ~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 147 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (290)
T ss_dssp CC-SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred CC-CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence 22 467777788887777763 2556677778888888888777666666777788888888877543 2334446677
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCccc
Q 040025 253 GSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFS 314 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 314 (362)
++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+...++|+.|+|++|.+.
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 78888888888877655556677788888888888877 56666667777888888877665
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.5e-25 Score=200.28 Aligned_cols=259 Identities=20% Similarity=0.209 Sum_probs=178.2
Q ss_pred EEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCC----ccCCCCC-CCCEEECCCCcccccCchhhcCC----
Q 040025 76 KLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIP----PGIANLS-RLSYLNLSDSFFIGQIPSEILEL---- 146 (362)
Q Consensus 76 ~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~l~~~~p~~l~~l---- 146 (362)
..+++.+++.|.+|. .+...++|++|++++|.+.+. .+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 356788888887776 455556699999999988764 33 5677788 89999999999887777666664
Q ss_pred -CCCCEEEcCCCCCCCCcccccCCCchhhhhcC-CCCCEEEcCCcCCCCCCCCCC----cCC-CCCCcEEEeecccCCcc
Q 040025 147 -SNLVSLDLSGNAYPGGILELRKSSLTNLAEKL-TNLETLNLGLVSIFNTPIPHN----LGN-LSSLRFLSLNNCLVRGR 219 (362)
Q Consensus 147 -~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~l~~~----~~~-~~~L~~L~l~~n~l~~~ 219 (362)
++|++|++++|.+.+... ..+...+..+ ++|++|++++|.+++.. +.. +.. .++|++|++++|.+.+.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSS----DELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp CTTCCEEECCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred CCCccEEECcCCcCChHHH----HHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 899999999997633111 1223345555 78999999999887665 322 333 35899999998888754
Q ss_pred CC----ccccCCC-CCCEEeCCCCCCCccccC----cccCCC-CCCCEEEccCCcCCcc----CCccccC-CCCCCEEEc
Q 040025 220 IP----SSLGNLL-KLIHLDLSQNQLLSGEIP----ASIGNL-GSLKELDLSGNILSSK----LPASIGN-LSSLKELDL 284 (362)
Q Consensus 220 ~~----~~~~~~~-~L~~L~l~~n~~~~~~l~----~~l~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L 284 (362)
.. ..+..++ +|++|++++|.+.. ..+ ..+..+ ++|++|++++|.+++. ++..+.. .++|++|++
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 33 3344554 88899998885432 222 233445 4888888888888753 3444444 458888888
Q ss_pred cCCcCCCccc----hhhhCCCCCCEEecccCccccc-------CCccccCCCCCCEEEccCCcCCCCchh
Q 040025 285 SMNIFSGEVP----AVIGNLSSLKALTLVENNFSGD-------LPAFIGNLRSLEILDLSLNKFSGELPV 343 (362)
Q Consensus 285 ~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~~~~L~~L~L~~n~l~~~~~~ 343 (362)
++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+..+.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 8888886544 2345678888888888874422 233455677788888888888765443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=186.92 Aligned_cols=231 Identities=21% Similarity=0.204 Sum_probs=180.7
Q ss_pred cCCCCCEEEcCCCCCCCCCCCcc--CCCCCCCCEEECCCCcccccCchhh--cCCCCCCEEEcCCCCCCCCcccccCCCc
Q 040025 96 NLIHLEWLNLAGNDFRYSEIPPG--IANLSRLSYLNLSDSFFIGQIPSEI--LELSNLVSLDLSGNAYPGGILELRKSSL 171 (362)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~p~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (362)
....++.+.+.++.+....+... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+.. ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~-----~~~ 136 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR-----SWL 136 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT-----SSH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh-----hhh
Confidence 34457888888876653211111 2235679999999999998888887 88999999999999875321 112
Q ss_pred h-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCcc--C--CccccCCCCCCEEeCCCCCCCccccC
Q 040025 172 T-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGR--I--PSSLGNLLKLIHLDLSQNQLLSGEIP 246 (362)
Q Consensus 172 ~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~l~ 246 (362)
+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.+.. ++
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~ 213 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--PT 213 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--HH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--hH
Confidence 2 23457899999999999998776 78899999999999999997642 2 2234688999999999996632 23
Q ss_pred c----ccCCCCCCCEEEccCCcCCccCCccccCC---CCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCc
Q 040025 247 A----SIGNLGSLKELDLSGNILSSKLPASIGNL---SSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPA 319 (362)
Q Consensus 247 ~----~l~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 319 (362)
. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|.+++. |.
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~ 289 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ 289 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch
Confidence 2 24678999999999999998878777766 69999999999999 6777654 7999999999999953 43
Q ss_pred cccCCCCCCEEEccCCcCCC
Q 040025 320 FIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 320 ~l~~~~~L~~L~L~~n~l~~ 339 (362)
+..+++|+.|+|++|.+++
T Consensus 290 -~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSC
T ss_pred -hhhCCCccEEECcCCCCCC
Confidence 5778999999999999885
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.8e-22 Score=179.04 Aligned_cols=195 Identities=26% Similarity=0.351 Sum_probs=163.7
Q ss_pred CCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCC
Q 040025 119 IANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPH 198 (362)
Q Consensus 119 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 198 (362)
...+++|++|++++|.+. .+| .+..+++|++|++++|.+ ..++. +..+++|++|++++|.+.+. .
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i---------~~~~~-~~~l~~L~~L~L~~n~l~~~---~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI---------TDLAP-LKNLTKITELELSGNPLKNV---S 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC---------CCCGG-GTTCCSCCEEECCSCCCSCC---G
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcC---------CCChh-HccCCCCCEEEccCCcCCCc---h
Confidence 456889999999999876 455 588899999999999976 34444 78899999999999998764 3
Q ss_pred CcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC
Q 040025 199 NLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS 278 (362)
Q Consensus 199 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 278 (362)
.+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+++..+ +..+++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 174 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence 688899999999999998853 3 38899999999999996543 333 7789999999999999985433 889999
Q ss_pred CCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 279 LKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 279 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999985443 7889999999999999985543 7889999999999999985
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.9e-24 Score=195.51 Aligned_cols=85 Identities=26% Similarity=0.354 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCccccCC--ccccccCC-CCCEEEcCCCCCCCCCCCccCCCC-----CCCCEEECCCCcccccCchhhc-
Q 040025 74 VFKLDLSNSCLQGSINS--SSGLFNLI-HLEWLNLAGNDFRYSEIPPGIANL-----SRLSYLNLSDSFFIGQIPSEIL- 144 (362)
Q Consensus 74 v~~L~l~~~~l~~~~~~--~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~p~~l~- 144 (362)
++.|++++|.+.+..+. ...+..++ +|++|++++|.+.+. .+..+..+ ++|++|++++|.+.+..+..+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 45555555554432220 01334444 455555555544432 22222221 4555555555554433333222
Q ss_pred ---CC-CCCCEEEcCCCCC
Q 040025 145 ---EL-SNLVSLDLSGNAY 159 (362)
Q Consensus 145 ---~l-~~L~~L~l~~n~l 159 (362)
.+ ++|++|++++|.+
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHTSCTTCCEEECCSSCG
T ss_pred HHHhCCCCccEEECcCCcC
Confidence 22 4555555555543
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.7e-21 Score=188.74 Aligned_cols=231 Identities=28% Similarity=0.305 Sum_probs=163.3
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCE
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVS 151 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~ 151 (362)
.+++.|++++|.++. +|. .+++|++|++++|.++. +|. .+++|++|++++|.+.+ +|. .+++|++
T Consensus 61 ~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC-----CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCE
T ss_pred CCCcEEEecCCCCCC-CCC-----cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCE
Confidence 467778888777763 232 45777777777777663 444 56677777777776653 333 4456666
Q ss_pred EEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCC-CCCCc--------------CCCCCCcEEEeecccC
Q 040025 152 LDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTP-IPHNL--------------GNLSSLRFLSLNNCLV 216 (362)
Q Consensus 152 L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~--------------~~~~~L~~L~l~~n~l 216 (362)
|++++|.+. .+|. .+++|++|++++|.+++.. .+..+ ..+++|+.|++++|.+
T Consensus 126 L~L~~N~l~---------~lp~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 126 LWIFGNQLT---------SLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp EECCSSCCS---------CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred EECCCCCCC---------cCCC---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC
Confidence 666666542 1221 1245555555555544321 01111 3348899999999998
Q ss_pred CccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchh
Q 040025 217 RGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAV 296 (362)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 296 (362)
.+ +|. .+++|+.|++++|.+. .+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|.
T Consensus 194 ~~-l~~---~~~~L~~L~L~~N~l~--~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 194 AS-LPT---LPSELYKLWAYNNRLT--SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS--SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-
T ss_pred CC-CCC---ccchhhEEECcCCccc--ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc-
Confidence 74 443 3578999999999654 3554 35889999999999985 55 45689999999999998 5665
Q ss_pred hhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcC
Q 040025 297 IGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGN 347 (362)
Q Consensus 297 l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~ 347 (362)
.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 6789999999999999 88988999999999999999999887776643
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=169.53 Aligned_cols=181 Identities=23% Similarity=0.288 Sum_probs=143.7
Q ss_pred CCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccC
Q 040025 147 SNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGN 226 (362)
Q Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 226 (362)
...++++++++.+ ..+|..+. ++++.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..
T Consensus 14 ~~~~~l~~~~~~l---------~~~p~~~~--~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQGKSL---------DSVPSGIP--ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp GGGTEEECTTCCC---------SSCCSCCC--TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCeEEecCCCCc---------cccCCCCC--CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 4567888888865 34444332 57889999999888776 677888899999999999888777777888
Q ss_pred CCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEE
Q 040025 227 LLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306 (362)
Q Consensus 227 ~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 306 (362)
+++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|+.|
T Consensus 82 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 82 LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 888999999888553 3334567788889999999888887666677888889999999888886666678888888999
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 307 TLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 307 ~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
+|++|.+.+..+..+..+++|++|+|++|.+.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9998888866666788888888999988888765
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.4e-21 Score=174.45 Aligned_cols=195 Identities=26% Similarity=0.362 Sum_probs=120.2
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchh
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTN 173 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 173 (362)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+. .++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~---------~~~- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK---------NVS- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS---------CCG-
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC---------Cch-
Confidence 3456666666666665543 22 45666666666666666543 333 666666666666666542 222
Q ss_pred hhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCC
Q 040025 174 LAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLG 253 (362)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~ 253 (362)
.+..+++|++|++++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.. ++. +..++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~ 173 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLS 173 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCT
T ss_pred hhcCCCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCC
Confidence 3555666677777666665532 26666777777777776654322 6666777777777774432 333 66677
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccc
Q 040025 254 SLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 315 (362)
+|+.|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 77777777777764332 566777777777777776433 25667777777777777653
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.6e-22 Score=169.09 Aligned_cols=196 Identities=22% Similarity=0.228 Sum_probs=120.5
Q ss_pred CCCEEECCCCcccccCchhhcCCCCCCEEEcCCCC-CCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCC
Q 040025 124 RLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNA-YPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGN 202 (362)
Q Consensus 124 ~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 202 (362)
+|++|++++|.+.+..+..+..+++|++|++++|. + ..++ +..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l---------~~i~------------------------~~~f~~ 78 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL---------QQLE------------------------SHSFYN 78 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC---------CEEC------------------------TTTEES
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc---------ceeC------------------------HhHcCC
Confidence 78888888888776655567777788888887774 3 2222 223444
Q ss_pred CCCCcEEEeec-ccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCC---EEEccCC-cCCccCCccccCCC
Q 040025 203 LSSLRFLSLNN-CLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLK---ELDLSGN-ILSSKLPASIGNLS 277 (362)
Q Consensus 203 ~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~ 277 (362)
+++|++|++++ |.+.+..+..+..+++|++|++++|.+.. +|. +..+++|+ +|++++| .+++..+..|..++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 55555555554 45543333445555555555555553321 343 44555555 7777777 66655555666777
Q ss_pred CCC-EEEccCCcCCCccchhhhCCCCCCEEecccCc-ccccCCccccCC-CCCCEEEccCCcCCCCchhhhcCCCCCCEE
Q 040025 278 SLK-ELDLSMNIFSGEVPAVIGNLSSLKALTLVENN-FSGDLPAFIGNL-RSLEILDLSLNKFSGELPVFIGNLPSLEEL 354 (362)
Q Consensus 278 ~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 354 (362)
+|+ +|++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|++|++++|.+++ +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 777 7777777776 444433333677777777774 665445566667 777777777777774 4433 56677777
Q ss_pred eCCCC
Q 040025 355 DLSEN 359 (362)
Q Consensus 355 ~l~~n 359 (362)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 77765
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.7e-21 Score=166.00 Aligned_cols=181 Identities=25% Similarity=0.257 Sum_probs=154.2
Q ss_pred CCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCC
Q 040025 123 SRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGN 202 (362)
Q Consensus 123 ~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 202 (362)
...++++++++.+. .+|..+. ++++.|++++|.+.+ ..+..+..+++|++|++++|.+++.. +..+..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~ 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDD 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCccC-HhHhcc
Confidence 45789999999876 6776554 689999999998632 23345778999999999999999876 777899
Q ss_pred CCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 040025 203 LSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 203 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 282 (362)
+++|++|++++|.+.+..+..+..+++|++|++++|.+. .-.+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 999999999999999777778899999999999999654 3334457889999999999999997777789999999999
Q ss_pred EccCCcCCCccchhhhCCCCCCEEecccCccccc
Q 040025 283 DLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316 (362)
Q Consensus 283 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 316 (362)
+|++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999977777888999999999999999865
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=8.9e-24 Score=205.53 Aligned_cols=288 Identities=15% Similarity=0.080 Sum_probs=174.3
Q ss_pred CcEEEEEcCCCCCccc----cCCccccccCCCCCEEEcCCCCCCCC---CCCccCCCCCCCCEEECCCCcccccCchhhc
Q 040025 72 GHVFKLDLSNSCLQGS----INSSSGLFNLIHLEWLNLAGNDFRYS---EIPPGIANLSRLSYLNLSDSFFIGQIPSEIL 144 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~ 144 (362)
.+++.|++++|.+.+. ++. ....+++|++|++++|.+.+. .++..+.++++|++|++++|.+.+ +|..+.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 5789999999977543 222 456789999999998887632 134445678999999999988764 677777
Q ss_pred CCCCCCEEEcCCCCCCCC---c---------------ccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCC
Q 040025 145 ELSNLVSLDLSGNAYPGG---I---------------LELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSL 206 (362)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~---~---------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L 206 (362)
.+++|++|+++....... . .......++..+..+++|++|++++|.+++..+...+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 888888888864211100 0 0011245666677788889999988887655433445677777
Q ss_pred cEEEeecccCCccCCccccCCCCCCEEeCCC----------CCCCcc-ccCcccCCCCCCCEEEccCCcCCccCCccc--
Q 040025 207 RFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQ----------NQLLSG-EIPASIGNLGSLKELDLSGNILSSKLPASI-- 273 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~----------n~~~~~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-- 273 (362)
++|+++++...+.++.....+++|++|++++ +...+. .++.....+++|++|+++.+.+++..+..+
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7777773322222233334566677777763 222221 122222334555555554444443333333
Q ss_pred --------------------------------cCCCCCCEEEccCCc--CCCccchhh-hCCCCCCEEecccCcccc-cC
Q 040025 274 --------------------------------GNLSSLKELDLSMNI--FSGEVPAVI-GNLSSLKALTLVENNFSG-DL 317 (362)
Q Consensus 274 --------------------------------~~l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~L~~n~l~~-~~ 317 (362)
..+++|++|+++.|. +++..+..+ ..+++|+.|++++|.+++ .+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 334555555554322 333333333 236777777777777765 34
Q ss_pred CccccCCCCCCEEEccCCcCCCC-chhhhcCCCCCCEEeCCCCCCC
Q 040025 318 PAFIGNLRSLEILDLSLNKFSGE-LPVFIGNLPSLEELDLSENQLS 362 (362)
Q Consensus 318 ~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~ls 362 (362)
+..+..+++|++|+|++|.+++. ++.....+++|++|+|++|++|
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 45556778888888888887654 3444456788888888888764
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.5e-21 Score=167.86 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCc-ccccCchhhcCCCCCCEEEcCC-CCCCCCcccccCCCch-hh
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSF-FIGQIPSEILELSNLVSLDLSG-NAYPGGILELRKSSLT-NL 174 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~ 174 (362)
++|++|++++|.++.. .+..+..+++|++|++++|. +.+..+..+..+++|++|++++ |.+ ..++ ..
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l---------~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL---------TYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC---------CEECTTS
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe---------eEcCHHH
Confidence 4899999999998864 44578999999999999997 7666666788999999999998 765 2222 23
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCc---EEEeecc-cCCccCCccccCCCCCC-EEeCCCCCCCccccCccc
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLR---FLSLNNC-LVRGRIPSSLGNLLKLI-HLDLSQNQLLSGEIPASI 249 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~l~~~l 249 (362)
+..+++|++|++++|.+++. +. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.+. .+|...
T Consensus 101 f~~l~~L~~L~l~~n~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~ 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYA 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTT
T ss_pred hCCCCCCCEEeCCCCCCccc--cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhh
Confidence 45566666666666666552 22 55555555 6666666 55544334455555555 5555555332 233222
Q ss_pred CCCCCCCEEEccCCc-CCccCCccccCC-CCCCEEEccCCcCC
Q 040025 250 GNLGSLKELDLSGNI-LSSKLPASIGNL-SSLKELDLSMNIFS 290 (362)
Q Consensus 250 ~~~~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~ 290 (362)
...++|+.|++++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 122445555555542 443333444444 44444444444444
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=6.8e-23 Score=199.30 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=133.3
Q ss_pred chhhhhcCCCCCEEEcCC-----------cCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccC-CCCCCEEeCCC-
Q 040025 171 LTNLAEKLTNLETLNLGL-----------VSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGN-LLKLIHLDLSQ- 237 (362)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~-----------~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~- 237 (362)
++.....+++|++|+++. +.+++..+......+++|++|+++.+.+.+..+..+.. +++|+.|++++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 444556678888888883 44544432333456889999999888887666666655 88999999963
Q ss_pred --CCCCcc-----ccCcccCCCCCCCEEEccCCc--CCccCCcccc-CCCCCCEEEccCCcCCCc-cchhhhCCCCCCEE
Q 040025 238 --NQLLSG-----EIPASIGNLGSLKELDLSGNI--LSSKLPASIG-NLSSLKELDLSMNIFSGE-VPAVIGNLSSLKAL 306 (362)
Q Consensus 238 --n~~~~~-----~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 306 (362)
++..++ .++..+..+++|+.|+++.|. +++.....+. .+++|++|++++|.+++. ++..+..+++|++|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 223332 233445678999999997654 5655444443 489999999999999863 45556789999999
Q ss_pred ecccCccccc-CCccccCCCCCCEEEccCCcCCCCchhhh-cCCCCCCEEeCCC
Q 040025 307 TLVENNFSGD-LPAFIGNLRSLEILDLSLNKFSGELPVFI-GNLPSLEELDLSE 358 (362)
Q Consensus 307 ~L~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~ 358 (362)
++++|.+++. ++.....+++|++|+|++|++++.....+ ..++.+....+..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 9999998765 34455678999999999999987654444 3567776655543
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.2e-22 Score=197.59 Aligned_cols=286 Identities=18% Similarity=0.151 Sum_probs=153.6
Q ss_pred CcEEEEEcCCC-CCccc-cCCccccccCCCCCEEEcCCCCCCCCC---CCccCCCCCCCCEEECCCCc--ccc-cCchhh
Q 040025 72 GHVFKLDLSNS-CLQGS-INSSSGLFNLIHLEWLNLAGNDFRYSE---IPPGIANLSRLSYLNLSDSF--FIG-QIPSEI 143 (362)
Q Consensus 72 ~~v~~L~l~~~-~l~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~--l~~-~~p~~l 143 (362)
.+++.|++.+| .+.+. ++. ....+++|++|++++|.+.+.. ++.....+++|++|++++|. +.. .++..+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 56788888877 33321 222 3346788888888877765432 22223466677777777664 211 122222
Q ss_pred cCCCCCCEEEcCCCCCCC----------------------------------------------CcccccCCCchhhhhc
Q 040025 144 LELSNLVSLDLSGNAYPG----------------------------------------------GILELRKSSLTNLAEK 177 (362)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~----------------------------------------------~~~~~~~~~~~~~~~~ 177 (362)
..+++|++|++++|.... .........++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 345667777766651000 0000111234444456
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCcc-CCccccCCCCCCEEeCCC--------CCCCccc-c--
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGR-IPSSLGNLLKLIHLDLSQ--------NQLLSGE-I-- 245 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~--------n~~~~~~-l-- 245 (362)
+++|++|++++|.+++..+...+..+++|++|++++| +.+. ++.....+++|+.|++.. +...+.. +
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 7888888888888665443344567788888888776 3211 122222456666666622 1111111 1
Q ss_pred ----------------------Cccc-CCCCCCCEEEcc--C----CcCCcc-----CCccccCCCCCCEEEccCCcCCC
Q 040025 246 ----------------------PASI-GNLGSLKELDLS--G----NILSSK-----LPASIGNLSSLKELDLSMNIFSG 291 (362)
Q Consensus 246 ----------------------~~~l-~~~~~L~~L~l~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~ 291 (362)
+..+ ..+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 1111 124555555555 2 223211 111133455666666655 4444
Q ss_pred ccchhhhC-CCCCCEEecccCcccccCCccc-cCCCCCCEEEccCCcCCCCchh-hhcCCCCCCEEeCCCCCC
Q 040025 292 EVPAVIGN-LSSLKALTLVENNFSGDLPAFI-GNLRSLEILDLSLNKFSGELPV-FIGNLPSLEELDLSENQL 361 (362)
Q Consensus 292 ~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l 361 (362)
..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 33334433 6777777787777765544433 5577888888888887544433 334577888888888875
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.9e-20 Score=178.18 Aligned_cols=207 Identities=22% Similarity=0.260 Sum_probs=152.8
Q ss_pred CCCCCCCCCCCCCc-----cccce-EecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCC
Q 040025 47 VASWKPAGGNIDCC-----SWDGV-ECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIA 120 (362)
Q Consensus 47 ~~~w~~~~~~~~~c-----~~~~v-~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 120 (362)
+.+|.. +..+| .|.++ .|.. ++++.|+++++++++ +|. .+ +++|++|++++|.++. +| .
T Consensus 33 l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~ 97 (571)
T 3cvr_A 33 WDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---E 97 (571)
T ss_dssp HHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---C
T ss_pred HHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---c
Confidence 345654 44566 68888 6753 478999999999987 444 33 3889999999999883 66 5
Q ss_pred CCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCc
Q 040025 121 NLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNL 200 (362)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 200 (362)
.+++|++|++++|.+.+ +|. +.. +|++|++++|.+. .+|. .+++|++|++++|.+++. +.
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~---------~lp~---~l~~L~~L~Ls~N~l~~l--p~-- 157 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT---------MLPE---LPALLEYINADNNQLTML--PE-- 157 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS---------CCCC---CCTTCCEEECCSSCCSCC--CC--
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC---------CCCC---cCccccEEeCCCCccCcC--CC--
Confidence 57899999999999876 776 554 8999999999763 3444 578899999999988763 33
Q ss_pred CCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCC-------CEEEccCCcCCccCCccc
Q 040025 201 GNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL-------KELDLSGNILSSKLPASI 273 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L-------~~L~l~~n~l~~~~~~~l 273 (362)
.+++|++|++++|.+.+ +|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.++ .+|..+
T Consensus 158 -~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred -cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 56788888888888875 555 54 78888888888553 4565 433 56 88888888877 466666
Q ss_pred cCCCCCCEEEccCCcCCCccchhhhC
Q 040025 274 GNLSSLKELDLSMNIFSGEVPAVIGN 299 (362)
Q Consensus 274 ~~l~~L~~L~L~~n~l~~~~~~~l~~ 299 (362)
..+++|+.|+|++|.+++..|..+..
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66788888888888887777766554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=8.9e-20 Score=174.79 Aligned_cols=186 Identities=22% Similarity=0.303 Sum_probs=136.6
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcC
Q 040025 99 HLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKL 178 (362)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l 178 (362)
+|+.|++++|.+.+ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+. .+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~---------~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS---------TLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS---------CCCC-CCT-
T ss_pred CccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC---------Ccch-hhc-
Confidence 89999999998875 66655 378999999999886 677 45788999999998763 2444 322
Q ss_pred CCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEE
Q 040025 179 TNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKEL 258 (362)
Q Consensus 179 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L 258 (362)
+|++|++++|.+++. +. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+.. +|. +. ++|+.|
T Consensus 121 -~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L 185 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTML--PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEAL 185 (571)
T ss_dssp -TCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred -CCCEEECCCCcCCCC--CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEE
Confidence 888888888888773 33 57888888888888875 554 56788888888885432 566 54 788888
Q ss_pred EccCCcCCccCCccccCCCCC-------CEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccC
Q 040025 259 DLSGNILSSKLPASIGNLSSL-------KELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGN 323 (362)
Q Consensus 259 ~l~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 323 (362)
++++|.++ .+|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus 186 ~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 186 DVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 88888887 5555 443 56 88888888887 56776767888888888888888777766554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.3e-19 Score=164.74 Aligned_cols=243 Identities=21% Similarity=0.171 Sum_probs=166.3
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCccccc
Q 040025 59 CCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQ 138 (362)
Q Consensus 59 ~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 138 (362)
.|.|..|.|. +++++ .+|. .+ .+++++|+|++|.++.. .+..|.++++|++|++++|.+.+.
T Consensus 8 ~C~~~~v~C~------------~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 8 HCSNRVFLCQ------------ESKVT-EIPS--DL--PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEV 69 (350)
T ss_dssp EEETTEEEEE------------STTCC-SCCT--TC--CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCE
T ss_pred EeeCCEEEec------------CCCCC-ccCc--Cc--CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCc
Confidence 3667767774 33444 3343 23 36899999999998753 234689999999999999998766
Q ss_pred Cch-hhcCCCCCCE-EEcCCCCCCCCcccccCCCc-hhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc-
Q 040025 139 IPS-EILELSNLVS-LDLSGNAYPGGILELRKSSL-TNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC- 214 (362)
Q Consensus 139 ~p~-~l~~l~~L~~-L~l~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n- 214 (362)
+|. .|.+++++++ +.+..|++ ..+ +..+..+++|++|++++|.+.... +..+....++..+++.++
T Consensus 70 i~~~~f~~L~~l~~~l~~~~N~l---------~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 70 IEADVFSNLPKLHEIRIEKANNL---------LYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp ECTTSBCSCTTCCEEEEEEETTC---------CEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCT
T ss_pred cChhHhhcchhhhhhhcccCCcc---------cccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhcccc
Confidence 654 5678888775 55556655 333 345678889999999998887665 555566677888888664
Q ss_pred cCCccCCccccCC-CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccC-CcCCccCCccccCCCCCCEEEccCCcCCCc
Q 040025 215 LVRGRIPSSLGNL-LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSG-NILSSKLPASIGNLSSLKELDLSMNIFSGE 292 (362)
Q Consensus 215 ~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 292 (362)
.+....+..+..+ ..++.|++++|.+. .++.......+|+.+++.+ |.++...+..|..+++|+.|++++|+++ .
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~ 216 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-C
T ss_pred ccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-c
Confidence 4443333344544 35788888888653 3555555667788888875 4555444456788888888888888888 4
Q ss_pred cchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCC
Q 040025 293 VPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLN 335 (362)
Q Consensus 293 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n 335 (362)
+|. ..+.+|+.|.+.++.-...+|. +..+++|+.+++.++
T Consensus 217 lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 217 LPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 443 2356677777766654446664 677888888888764
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=151.98 Aligned_cols=180 Identities=24% Similarity=0.260 Sum_probs=100.9
Q ss_pred CEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCC
Q 040025 126 SYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSS 205 (362)
Q Consensus 126 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 205 (362)
+.++.+++.+. .+|..+ .++|++|++++|.+. ...+..+..+++|++|++++|.++... +..+..+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 77 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK--------SLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTS 77 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC--------CCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTT
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC--------cCChhhhcccccCcEEECCCCccCccC-hhhcCCCCC
Confidence 45666666553 344333 356777777777542 111223455666666666666666443 444566666
Q ss_pred CcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEcc
Q 040025 206 LRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285 (362)
Q Consensus 206 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 285 (362)
|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 666666666666444444556666666666666432 2223334556666666666666665444445556666666666
Q ss_pred CCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCC
Q 040025 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLR 325 (362)
Q Consensus 286 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 325 (362)
+|.+.+ .+++|+.|+++.|.++|.+|..++.++
T Consensus 157 ~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 157 DNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 665442 234556666666666666665555443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.9e-19 Score=150.12 Aligned_cols=179 Identities=26% Similarity=0.292 Sum_probs=97.0
Q ss_pred CEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhhcCC
Q 040025 101 EWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAEKLT 179 (362)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~ 179 (362)
+.++.+++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++ ..+..++
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~ 76 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---------SLPNGVFNKLT 76 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTCT
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------ccChhhcCCCC
Confidence 345555554432 33222 345666666666665444444556666666666666542 222 2344566
Q ss_pred CCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEE
Q 040025 180 NLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELD 259 (362)
Q Consensus 180 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~ 259 (362)
+|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..+..+..+++|++|+
T Consensus 77 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred CcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEE
Confidence 6666666666665443 444556666666666666665444444556666666666666432 22223355566666666
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCC
Q 040025 260 LSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLS 301 (362)
Q Consensus 260 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 301 (362)
+++|.+.+ .+++|+.|++..|.++|.+|..++.++
T Consensus 155 l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 155 LHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 66665442 234566666666666666665555443
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=3.1e-19 Score=151.26 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=106.8
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC-ccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP-SSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDL 260 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l 260 (362)
+.++++++.++.. |..+ .+.+++|++++|.+.+..+ ..+..+++|+.|++++|.+. +-.+..+..+++|++|++
T Consensus 14 ~~l~~s~n~l~~i--P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKI--PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSC--CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccC--ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 4777777777653 3333 2356777787777775533 34667777777777777543 233446677777777777
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 261 SGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 261 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|++|+|++|.+.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 77777766666677777777777777777766667777777777777777777766677777777777777777777654
Q ss_pred c
Q 040025 341 L 341 (362)
Q Consensus 341 ~ 341 (362)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.6e-19 Score=158.40 Aligned_cols=187 Identities=27% Similarity=0.364 Sum_probs=147.4
Q ss_pred EECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCc
Q 040025 128 LNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLR 207 (362)
Q Consensus 128 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 207 (362)
+.+..+.+.+.. .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+++.. + +..+++|+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i---------~~~~-~~~~l~~L~~L~L~~n~l~~~~-~--l~~l~~L~ 93 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDI---------KSVQ-GIQYLPNVTKLFLNGNKLTDIK-P--LANLKNLG 93 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCC---------CCCT-TGGGCTTCCEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCc---------ccCh-hHhcCCCCCEEEccCCccCCCc-c--cccCCCCC
Confidence 344444443322 245678999999999976 3333 3677899999999999998764 3 88899999
Q ss_pred EEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCC
Q 040025 208 FLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMN 287 (362)
Q Consensus 208 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 287 (362)
+|++++|.+.+ ++ .+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|
T Consensus 94 ~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 94 WLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp EEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 99999999875 33 48889999999999996543 3 4577889999999999998854 56888999999999999
Q ss_pred cCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 288 IFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 288 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred ccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 9986544 7889999999999999884 443 78899999999999988753
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=5.7e-22 Score=192.84 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=74.9
Q ss_pred CcEEEEEcCCCCCccccCCccccc-cCCCCCEEEcCCC-CCCCCCCCccCCCCCCCCEEECCCCcccccCchhhc----C
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLF-NLIHLEWLNLAGN-DFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEIL----E 145 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~----~ 145 (362)
.++++|+++++.+.+.... .+. .+++|++|++++| .+....++..+.++++|++|++++|.+.+..+..+. .
T Consensus 105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 5688899998887765443 444 6889999999988 444322344455789999999999887655444343 5
Q ss_pred CCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCc
Q 040025 146 LSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLV 189 (362)
Q Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 189 (362)
+++|++|++++|. . .+....+......+++|++|++++|
T Consensus 183 ~~~L~~L~l~~~~-~----~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLA-S----EVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCC-S----CCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccC-C----cCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6799999999885 0 0011234444556778888888776
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.8e-19 Score=161.64 Aligned_cols=222 Identities=20% Similarity=0.139 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCE-EECCCCcccccCchhhcCCCCCC
Q 040025 72 GHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSY-LNLSDSFFIGQIPSEILELSNLV 150 (362)
Q Consensus 72 ~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~-L~l~~~~l~~~~p~~l~~l~~L~ 150 (362)
.++++|+|++|.++...+. +|.++++|++|+|++|.+....-+..|.++++|++ +.+.+|.+....|..+..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 3566666666666644333 46666666666666666543211234556666554 33444555555555566666666
Q ss_pred EEEcCCCCCCCCcccccCCCch-hhhhcCCCCCEEEcCCc-CCCCCCCCCCcCCC-CCCcEEEeecccCCccCCccccCC
Q 040025 151 SLDLSGNAYPGGILELRKSSLT-NLAEKLTNLETLNLGLV-SIFNTPIPHNLGNL-SSLRFLSLNNCLVRGRIPSSLGNL 227 (362)
Q Consensus 151 ~L~l~~n~l~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~l~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~ 227 (362)
+|++++|.+.. ++ .......++..+++.++ .+.... ...+..+ ..++.|++++|.+. .++......
T Consensus 108 ~L~l~~n~l~~---------~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~ 176 (350)
T 4ay9_X 108 YLLISNTGIKH---------LPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176 (350)
T ss_dssp EEEEEEECCSS---------CCCCTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCSSCCC-EECTTSSTT
T ss_pred ccccccccccc---------CCchhhcccchhhhhhhcccccccccc-ccchhhcchhhhhhcccccccc-CCChhhccc
Confidence 66666665421 11 11223344555555442 333322 3334444 34666666666665 333333344
Q ss_pred CCCCEEeCCCCCCCccccC-cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEE
Q 040025 228 LKLIHLDLSQNQLLSGEIP-ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306 (362)
Q Consensus 228 ~~L~~L~l~~n~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 306 (362)
.+|+.+++.+++..+ .+| ..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+|. +..+++|+.+
T Consensus 177 ~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 177 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEA 251 (350)
T ss_dssp EEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred cchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence 556666665443332 333 34556666666666666666333222 34455555444322224442 4556666666
Q ss_pred ecccC
Q 040025 307 TLVEN 311 (362)
Q Consensus 307 ~L~~n 311 (362)
++.++
T Consensus 252 ~l~~~ 256 (350)
T 4ay9_X 252 SLTYP 256 (350)
T ss_dssp ECSCH
T ss_pred cCCCC
Confidence 66544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.8e-19 Score=147.52 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=111.1
Q ss_pred CCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCC
Q 040025 201 GNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLK 280 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 280 (362)
..+++|++|++++|.+. .++ .+..+++|++|++++|... .+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44566777777777666 444 4666777777777777332 234566778888888888888776777778888888
Q ss_pred EEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 281 ELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 281 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
+|++++|.+++..+..+..+++|++|++++|...+.+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 88888888887677777888888888888887333555 46778888888888888875 33 67778888888888887
Q ss_pred CC
Q 040025 361 LS 362 (362)
Q Consensus 361 ls 362 (362)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 63
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=8.8e-19 Score=148.51 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=98.2
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEcc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLS 261 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~ 261 (362)
+.++.+++.++.. |..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+ ++..|..|..+++|++|+++
T Consensus 14 ~~v~c~~~~l~~i--P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEI--PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSC--CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcC--CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECC
Confidence 4566666666543 22222 5677777777777655555666677777777777744 33335566667777777777
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 262 GNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 262 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
+|.++...+..|..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777765545556666777777777777766666666666777777777777665555556666677777777766654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.3e-18 Score=153.81 Aligned_cols=187 Identities=25% Similarity=0.296 Sum_probs=153.5
Q ss_pred EEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCC
Q 040025 102 WLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNL 181 (362)
Q Consensus 102 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L 181 (362)
.+.+....+.+. ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..++. +..+++|
T Consensus 28 ~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l---------~~~~~-l~~l~~L 92 (291)
T 1h6t_A 28 KDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL---------TDIKP-LANLKNL 92 (291)
T ss_dssp HHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCC---------CCCGG-GTTCTTC
T ss_pred HHHhcCCCcccc---cchhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCcc---------CCCcc-cccCCCC
Confidence 344555544421 23457899999999999986 444 488899999999999986 33444 7889999
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEcc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLS 261 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~ 261 (362)
++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.. + ..+..+++|+.|+++
T Consensus 93 ~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 93 GWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp CEEECCSSCCCCG---GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECC
T ss_pred CEEECCCCcCCCC---hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEcc
Confidence 9999999999774 3489999999999999999853 468899999999999996643 3 568889999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccc
Q 040025 262 GNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 262 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 315 (362)
+|.+.+..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 999986554 8899999999999999985 44 48899999999999999875
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.4e-19 Score=171.04 Aligned_cols=192 Identities=26% Similarity=0.294 Sum_probs=154.8
Q ss_pred CCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhc
Q 040025 98 IHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEK 177 (362)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 177 (362)
..+..+.+..+.+... ..+..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+ ..++. +..
T Consensus 21 ~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l---------~~~~~-l~~ 85 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL---------TDIKP-LTN 85 (605)
T ss_dssp HHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCC---------CCCGG-GGG
T ss_pred HHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCC---------CCChh-hcc
Confidence 3444556666655432 23567889999999999976 444 588999999999999986 33343 788
Q ss_pred CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCE
Q 040025 178 LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKE 257 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~ 257 (362)
+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.. + ..+..+++|+.
T Consensus 86 l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~ 157 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDT 157 (605)
T ss_dssp CTTCCEEECCSSCCCCC---TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSE
T ss_pred CCCCCEEECcCCCCCCC---hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC--c-hhhcccCCCCE
Confidence 99999999999999763 368899999999999999885 3 458889999999999996543 3 56788999999
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCccccc
Q 040025 258 LDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316 (362)
Q Consensus 258 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 316 (362)
|++++|.+.+..| +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+.+.
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 9999999987655 8899999999999999985 33 578899999999999988754
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=2.7e-18 Score=166.20 Aligned_cols=175 Identities=26% Similarity=0.296 Sum_probs=148.6
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
.+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+. .++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~---------~l~ 103 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK---------DLS 103 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC---------CCT
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC---------CCh
Confidence 46688999999999998874 33 58899999999999999875444 889999999999999863 233
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.. ++. +..+
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l 174 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVP-LAGL 174 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC--CGG-GTTC
T ss_pred -hhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC--chh-hccC
Confidence 477899999999999999874 4588999999999999999865 568999999999999996543 333 8899
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCc
Q 040025 253 GSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGE 292 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 292 (362)
++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 175 ~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9999999999999864 3588999999999999998753
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.4e-18 Score=145.77 Aligned_cols=155 Identities=26% Similarity=0.276 Sum_probs=122.6
Q ss_pred CCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccC-cccCCCCCCCEEE
Q 040025 181 LETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIP-ASIGNLGSLKELD 259 (362)
Q Consensus 181 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~-~~l~~~~~L~~L~ 259 (362)
-+.++.+++.++... ..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++ ..+..+++|+.|+
T Consensus 21 ~~~v~c~~~~l~~ip--~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP--AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSSCC--SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcCccC--CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--CcChhhcccCCCcCEEE
Confidence 456788777776543 322 378899999999988777888888889999999988653 333 4567888899999
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 260 LSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 260 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
+++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999888776777788889999999999888 677778888889999999988886556677888889999999888876
Q ss_pred Cch
Q 040025 340 ELP 342 (362)
Q Consensus 340 ~~~ 342 (362)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.1e-18 Score=157.43 Aligned_cols=177 Identities=20% Similarity=0.112 Sum_probs=95.8
Q ss_pred CEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcC-CCCCCcEEEeecccCCccCCccccCCC
Q 040025 150 VSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLG-NLSSLRFLSLNNCLVRGRIPSSLGNLL 228 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~ 228 (362)
+.++++++.+ ..+|..+ .+.+++|++++|.+++.. +..+. .+++|++|++++|.+.+..+..+..++
T Consensus 21 ~~l~c~~~~l---------~~iP~~~--~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQQL---------PNVPQSL--PSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSSCC---------SSCCSSC--CTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeCCCCc---------CccCccC--CCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 4666666654 2333322 234666666666666544 44444 666666666666666655555566666
Q ss_pred CCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhh---hCCCCCCE
Q 040025 229 KLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVI---GNLSSLKA 305 (362)
Q Consensus 229 ~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~ 305 (362)
+|++|+|++|.+ +.-.+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+..+ ..+++|+.
T Consensus 89 ~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 666666666643 22223345556666666666666665555556666666666666666653222222 34555666
Q ss_pred EecccCcccccCCccccCCCC--CCEEEccCCcCCC
Q 040025 306 LTLVENNFSGDLPAFIGNLRS--LEILDLSLNKFSG 339 (362)
Q Consensus 306 L~L~~n~l~~~~~~~l~~~~~--L~~L~L~~n~l~~ 339 (362)
|+|++|.+.+..+..+..++. ++.|+|++|.+..
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 666666555333334444443 2555565555543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.6e-18 Score=143.62 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=114.4
Q ss_pred CCCCccccceEecCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcc
Q 040025 56 NIDCCSWDGVECNENNGHVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFF 135 (362)
Q Consensus 56 ~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 135 (362)
....|.|.+|.|... ++. .+|. .+ .++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC
Confidence 568899999999532 222 2222 22 27788888888888765 567788888888888888887
Q ss_pred cccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCc-hhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecc
Q 040025 136 IGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSL-TNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNC 214 (362)
Q Consensus 136 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n 214 (362)
....+..+..+++|++|++++|.+. .+ +..+..+++|++|++++|.++. ++..+..+++|++|++++|
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLT---------VLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS
T ss_pred CCcChhhcccCCCcCEEECCCCcCC---------ccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC
Confidence 6544455678888888888888762 22 2345678888888888888873 3667788888888888888
Q ss_pred cCCccCCccccCCCCCCEEeCCCCCC
Q 040025 215 LVRGRIPSSLGNLLKLIHLDLSQNQL 240 (362)
Q Consensus 215 ~l~~~~~~~~~~~~~L~~L~l~~n~~ 240 (362)
.+.+..+..+..+++|+.|++++|..
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88866666678888888888888854
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.5e-17 Score=139.54 Aligned_cols=157 Identities=21% Similarity=0.192 Sum_probs=128.3
Q ss_pred CEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCC
Q 040025 150 VSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLK 229 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 229 (362)
+++++++|.+ ..+|..+ .+.+++|++++|.+++......+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~l~~s~n~l---------~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKL---------NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCC---------SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCc---------ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 5889988876 3444433 3457899999999987653456788999999999999998777778899999
Q ss_pred CCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecc
Q 040025 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLV 309 (362)
Q Consensus 230 L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 309 (362)
|++|++++|.+ ++..+..+..+++|++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|+.|+++
T Consensus 83 L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 83 VNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcc-CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 99999999965 33445568889999999999999998888889999999999999999998778888899999999999
Q ss_pred cCcccccCC
Q 040025 310 ENNFSGDLP 318 (362)
Q Consensus 310 ~n~l~~~~~ 318 (362)
+|.+.+..+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 998876443
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.6e-17 Score=139.41 Aligned_cols=152 Identities=22% Similarity=0.276 Sum_probs=127.7
Q ss_pred CEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCC
Q 040025 150 VSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLK 229 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 229 (362)
+.++++++.+ ..+|..+. ++|++|++++|.++... +..+..+++|++|++++|.+.+..|..+..+++
T Consensus 14 ~~v~c~~~~l---------~~iP~~l~--~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGKGL---------TEIPTNLP--ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTTSCC---------SSCCSSCC--TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred CEEEcCCCCc---------CcCCCccC--cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence 5788888765 34444332 68999999999998766 668889999999999999998888888999999
Q ss_pred CCEEeCCCCCCCccccC-cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEec
Q 040025 230 LIHLDLSQNQLLSGEIP-ASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTL 308 (362)
Q Consensus 230 L~~L~l~~n~~~~~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 308 (362)
|++|++++|.+. .+| ..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+..+..+++|+.|++
T Consensus 82 L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 82 LNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 999999999654 344 44678999999999999999888888999999999999999999777777888999999999
Q ss_pred ccCcccc
Q 040025 309 VENNFSG 315 (362)
Q Consensus 309 ~~n~l~~ 315 (362)
++|.+..
T Consensus 160 ~~N~~~c 166 (220)
T 2v9t_B 160 AQNPFIC 166 (220)
T ss_dssp CSSCEEC
T ss_pred CCCCcCC
Confidence 9998864
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=8.9e-18 Score=139.82 Aligned_cols=154 Identities=18% Similarity=0.270 Sum_probs=107.7
Q ss_pred hcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCC
Q 040025 176 EKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSL 255 (362)
Q Consensus 176 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L 255 (362)
..+++|++|++++|.++.. + .+..+++|++|++++|.+. .+..+..+++|++|++++|.+ ++..+..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCcc-CcccChhhcCCCCC
Confidence 4456677777777766632 2 4667777777777777554 223567777788888887744 33446667778888
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEEccCCc-CCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccC
Q 040025 256 KELDLSGNILSSKLPASIGNLSSLKELDLSMNI-FSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSL 334 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~ 334 (362)
++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 888888888877677777888888888888887 55 455 57778888888888888874 33 567788888888888
Q ss_pred CcCCC
Q 040025 335 NKFSG 339 (362)
Q Consensus 335 n~l~~ 339 (362)
|.+.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 87653
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=152.62 Aligned_cols=176 Identities=24% Similarity=0.229 Sum_probs=141.0
Q ss_pred CEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-hhhh-cCCCCCEEEcCCcCCCCCCCCCCcCCC
Q 040025 126 SYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT-NLAE-KLTNLETLNLGLVSIFNTPIPHNLGNL 203 (362)
Q Consensus 126 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~l~~~~~~~ 203 (362)
+.++++++.+. .+|..+. +.++.|++++|.+. .++ ..+. .+++|++|++++|.++... +..+..+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~---------~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS---------RLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPV 87 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC---------EECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC---------ccChhhhhhcccccCEEECCCCcCCccC-hhhccCC
Confidence 68899988875 5776553 56899999999763 333 2344 7899999999999998776 6788999
Q ss_pred CCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccc---cCCCCCC
Q 040025 204 SSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASI---GNLSSLK 280 (362)
Q Consensus 204 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~ 280 (362)
++|++|++++|.+....+..+..+++|+.|+|++|.+. ...+..+..+++|+.|++++|.+++..+..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 99999999999998777777889999999999999654 3446778899999999999999986555555 5689999
Q ss_pred EEEccCCcCCCccchhhhCCCC--CCEEecccCcccc
Q 040025 281 ELDLSMNIFSGEVPAVIGNLSS--LKALTLVENNFSG 315 (362)
Q Consensus 281 ~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~ 315 (362)
.|+|++|.+++..+..+..++. ++.|+|++|.+..
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999999999655567777776 4889999998864
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=1.6e-19 Score=178.80 Aligned_cols=222 Identities=19% Similarity=0.220 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCcccc
Q 040025 9 CHDDERSSLLQFKESLIINDTIDESYHTYHWIYECRPKVASWKPAGGNIDCCSWDGVECNENNGHVFKLDLSNSCLQGSI 88 (362)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~~~~v~c~~~~~~v~~L~l~~~~l~~~~ 88 (362)
..+.+++++.++......... ..-..|... ....+.|.++.+.. ++++.|+|.++.+....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~ 189 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKT---------------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEAN 189 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---------------TC------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccC---------------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcch
Confidence 345577888888876532211 122345442 44566787777754 67899999988876532
Q ss_pred CCccccccCCCCCEEEcCCCCCCCC--------CCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCC
Q 040025 89 NSSSGLFNLIHLEWLNLAGNDFRYS--------EIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYP 160 (362)
Q Consensus 89 ~~~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~ 160 (362)
. .+ |+.++|+.+.+... ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+
T Consensus 190 ~---~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l- 259 (727)
T 4b8c_D 190 Q---AL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL- 259 (727)
T ss_dssp ----------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC-
T ss_pred h---hH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC-
Confidence 2 22 23333333332221 13455677777777777777765 6666666777777777777765
Q ss_pred CCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCC
Q 040025 161 GGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQL 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 240 (362)
..+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.+
T Consensus 260 --------~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 260 --------TELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp --------SCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred --------cccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 345555666777777777777766 23566666677777777776665 5565666666666666666633
Q ss_pred CccccCcccCCCC-CCCEEEccCCcCCccCCc
Q 040025 241 LSGEIPASIGNLG-SLKELDLSGNILSSKLPA 271 (362)
Q Consensus 241 ~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~ 271 (362)
++.+|..+.... ....+++++|.+++.+|.
T Consensus 329 -~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 329 -EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred -CCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 334444432221 112345666666655554
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.2e-21 Score=185.45 Aligned_cols=213 Identities=22% Similarity=0.193 Sum_probs=148.5
Q ss_pred CCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcc----cc-cCCCchhhhhcCCCCCEEE-cCCcCCC
Q 040025 119 IANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGIL----EL-RKSSLTNLAEKLTNLETLN-LGLVSIF 192 (362)
Q Consensus 119 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~-~~~~~~~~~~~l~~L~~L~-l~~~~~~ 192 (362)
+..+++|+.|++++|.+. .+|..++.+++|+.|++++|..-.... .. ..+..|..+..+++|+.|+ ++.+.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 367889999999999875 789999999999999987652000000 00 0123444555555555555 333221
Q ss_pred CCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCcc
Q 040025 193 NTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPAS 272 (362)
Q Consensus 193 ~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 272 (362)
.+|+.+.+.+|.+... + ...|+.|++++|.+.. +|. +..+++|+.|++++|.++ .+|..
T Consensus 423 -----------~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred -----------chhhhhhhhccccccc-C-----ccCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchh
Confidence 2333444444444321 1 1258888888885532 665 788888999999998888 77888
Q ss_pred ccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccC-CccccCCCCCCEEEccCCcCCCCchh---hhcCC
Q 040025 273 IGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDL-PAFIGNLRSLEILDLSLNKFSGELPV---FIGNL 348 (362)
Q Consensus 273 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~~ 348 (362)
++.+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|+|++|.+++..|. .+..+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 8888999999999998885 66 7888889999999999888766 88888889999999999988865442 23457
Q ss_pred CCCCEEeC
Q 040025 349 PSLEELDL 356 (362)
Q Consensus 349 ~~L~~L~l 356 (362)
++|+.|++
T Consensus 560 p~L~~L~l 567 (567)
T 1dce_A 560 PSVSSILT 567 (567)
T ss_dssp TTCSEEEC
T ss_pred cccCccCC
Confidence 88888874
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.4e-20 Score=179.44 Aligned_cols=205 Identities=21% Similarity=0.202 Sum_probs=158.1
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCc-------------ccccCchhhcCCCCCCEEE-cCCCCC
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSF-------------FIGQIPSEILELSNLVSLD-LSGNAY 159 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------l~~~~p~~l~~l~~L~~L~-l~~n~l 159 (362)
+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 356889999999999876 378889999999999997764 4556777788888888888 565532
Q ss_pred CCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCC
Q 040025 160 PGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQ 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 239 (362)
.+|+.+.+..|.++... + ..|+.|++++|.+.+ +|. +..+++|+.|++++|.
T Consensus 423 -------------------~~L~~l~l~~n~i~~l~-~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 423 -------------------DDLRSKFLLENSVLKME-Y------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp -------------------HHHHHHHHHHHHHHHHH-H------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred -------------------chhhhhhhhcccccccC-c------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 12223333444333221 1 247888888888875 565 8888999999999996
Q ss_pred CCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCcc-chhhhCCCCCCEEecccCcccccCC
Q 040025 240 LLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEV-PAVIGNLSSLKALTLVENNFSGDLP 318 (362)
Q Consensus 240 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~ 318 (362)
+. .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|+|++|.+++..|
T Consensus 475 l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 475 LR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 54 578889999999999999999986 66 7889999999999999999766 8899999999999999999986655
Q ss_pred c---cccCCCCCCEEEc
Q 040025 319 A---FIGNLRSLEILDL 332 (362)
Q Consensus 319 ~---~l~~~~~L~~L~L 332 (362)
. .+..+++|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 3 2344789998864
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=4.9e-18 Score=147.88 Aligned_cols=171 Identities=24% Similarity=0.310 Sum_probs=141.1
Q ss_pred CCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccc
Q 040025 145 ELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSL 224 (362)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 224 (362)
.+.++..++++++.+ ..++ .+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +
T Consensus 17 ~l~~l~~l~l~~~~i---------~~~~-~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~--l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV---------TDLV-SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSP--L 81 (263)
T ss_dssp HHHHHHHHHHTCSCT---------TSEE-CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred HHHHHHHHHhcCCCc---------cccc-chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChh--h
Confidence 355677788888865 3344 467889999999999998764 3 68889999999999999985544 8
Q ss_pred cCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCC
Q 040025 225 GNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLK 304 (362)
Q Consensus 225 ~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 304 (362)
..+++|+.|++++|.+.. ++.. .. ++|+.|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+
T Consensus 82 ~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~ 153 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLE 153 (263)
T ss_dssp TTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCC
T ss_pred ccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCC
Confidence 899999999999996543 4443 33 899999999999985 33 588999999999999999854 4 678899999
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 305 ALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 305 ~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
.|++++|.+.+. ..+..+++|+.|++++|.+++.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999999999865 5678899999999999998865
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.9e-17 Score=144.10 Aligned_cols=171 Identities=25% Similarity=0.279 Sum_probs=142.0
Q ss_pred CCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCc
Q 040025 121 NLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNL 200 (362)
Q Consensus 121 ~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~ 200 (362)
.+.++..++++.+.+. .++ .+..+++|++|++++|.+ ..++ .+..+++|++|++++|.+++.. + +
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i---------~~l~-~l~~l~~L~~L~L~~N~i~~~~-~--l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNI---------QSLA-GMQFFTNLKELHLSHNQISDLS-P--L 81 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCC---------CCCT-TGGGCTTCCEEECCSSCCCCCG-G--G
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCc---------ccch-HHhhCCCCCEEECCCCccCCCh-h--h
Confidence 4556777888888876 344 578899999999999976 3444 5778999999999999998765 3 8
Q ss_pred CCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCC
Q 040025 201 GNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLK 280 (362)
Q Consensus 201 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 280 (362)
..+++|++|++++|.+.+ ++. +.. ++|+.|++++|.+.. + ..+..+++|+.|++++|++++. + .+..+++|+
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~--~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~ 153 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD--T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLE 153 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB--S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCC
T ss_pred ccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC--C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCC
Confidence 999999999999999985 343 333 899999999996643 3 3588999999999999999864 3 688899999
Q ss_pred EEEccCCcCCCccchhhhCCCCCCEEecccCccccc
Q 040025 281 ELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316 (362)
Q Consensus 281 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 316 (362)
.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999999999965 6688899999999999998855
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=6.4e-17 Score=130.98 Aligned_cols=132 Identities=27% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCCcEEEeecccCC-ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 040025 204 SSLRFLSLNNCLVR-GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 204 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 282 (362)
++|++|++++|.+. +.+|..+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45555555555554 4444444555555555555553321 1 344455555555555555554444444445555555
Q ss_pred EccCCcCCCcc-chhhhCCCCCCEEecccCcccccCC---ccccCCCCCCEEEccCCcCC
Q 040025 283 DLSMNIFSGEV-PAVIGNLSSLKALTLVENNFSGDLP---AFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 283 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~ 338 (362)
++++|.+++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555554321 1344455555555555555543322 24444555555555555444
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.3e-16 Score=132.17 Aligned_cols=132 Identities=27% Similarity=0.315 Sum_probs=98.6
Q ss_pred cEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCc-ccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEcc
Q 040025 207 RFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPA-SIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 285 (362)
++++++++.+. .+|..+. .+++.|++++|.+.. ..+. .+..+++|++|++++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888775 5565443 378888888885532 2222 36778888888888888887777778888888888888
Q ss_pred CCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCch
Q 040025 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 286 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
+|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|++|+|++|.+.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888887666667778888888888888887777777788888888888888776544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=6.6e-17 Score=128.19 Aligned_cols=130 Identities=24% Similarity=0.214 Sum_probs=100.1
Q ss_pred CCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEE
Q 040025 227 LLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKAL 306 (362)
Q Consensus 227 ~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 306 (362)
.++|+.|++++|.+..+.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777554356677777788888888888887754 567788888888888888886677777778888888
Q ss_pred ecccCccccc-CCccccCCCCCCEEEccCCcCCCCch---hhhcCCCCCCEEeCCC
Q 040025 307 TLVENNFSGD-LPAFIGNLRSLEILDLSLNKFSGELP---VFIGNLPSLEELDLSE 358 (362)
Q Consensus 307 ~L~~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~ 358 (362)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 34667888888899998888886655 4678888898888864
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=9.4e-18 Score=166.17 Aligned_cols=142 Identities=25% Similarity=0.246 Sum_probs=69.8
Q ss_pred CchhhcCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCc
Q 040025 139 IPSEILELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRG 218 (362)
Q Consensus 139 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 218 (362)
.|..+..+++|+.|+|++|.+ ..++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l---------~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQI---------FNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ------CCCCCCEEECTTSCC---------SCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ChhhhccCCCCcEEECCCCCC---------CCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-
Confidence 344555566666666666654 334444445555566666555555 22445555555555555555555
Q ss_pred cCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCC-CCEEEccCCcCCCccc
Q 040025 219 RIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSS-LKELDLSMNIFSGEVP 294 (362)
Q Consensus 219 ~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~ 294 (362)
.+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 44555555555555555555331 34555555555555555555555554444432211 1123455555554444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.7e-16 Score=127.31 Aligned_cols=132 Identities=24% Similarity=0.212 Sum_probs=68.5
Q ss_pred CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEe
Q 040025 228 LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALT 307 (362)
Q Consensus 228 ~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 307 (362)
++|+.|++++|.+..+.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555433234455455555555555555555533 4455555555555555555544454444455555555
Q ss_pred cccCcccccC-CccccCCCCCCEEEccCCcCCCCch---hhhcCCCCCCEEeCCCCCC
Q 040025 308 LVENNFSGDL-PAFIGNLRSLEILDLSLNKFSGELP---VFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 308 L~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l 361 (362)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555555321 1344555555555555555554333 2455555555555555543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6.9e-16 Score=127.74 Aligned_cols=132 Identities=26% Similarity=0.315 Sum_probs=113.4
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCc-cccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPS-SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDL 260 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l 260 (362)
+.++++++.++.. |..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+ ++..|..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~i--p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEI--PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSC--CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcC--ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEEC
Confidence 7899999988654 44343 3899999999999866554 488999999999999965 4455788999999999999
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCC
Q 040025 261 SGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318 (362)
Q Consensus 261 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 318 (362)
++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999998888889999999999999999998888899999999999999999987654
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=125.90 Aligned_cols=128 Identities=26% Similarity=0.299 Sum_probs=88.2
Q ss_pred cEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccC
Q 040025 207 RFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSM 286 (362)
Q Consensus 207 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 286 (362)
+.++++++.+. .+|..+ .++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56777777665 445433 256777777777543 4566677777777777777777766666677777777777777
Q ss_pred CcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 040025 287 NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSG 339 (362)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 339 (362)
|.+++..+..+..+++|+.|+|++|.++...+..+..+++|+.|+|++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 77776666667777777777777777775444456667777777777776654
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=4.4e-16 Score=123.42 Aligned_cols=128 Identities=27% Similarity=0.257 Sum_probs=87.9
Q ss_pred CCCcEEEeecccCC-ccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEE
Q 040025 204 SSLRFLSLNNCLVR-GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKEL 282 (362)
Q Consensus 204 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 282 (362)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 4555556666677777777664432 2 456667777777777777776666666667788888
Q ss_pred EccCCcCCCc-cchhhhCCCCCCEEecccCcccccCC---ccccCCCCCCEEEccC
Q 040025 283 DLSMNIFSGE-VPAVIGNLSSLKALTLVENNFSGDLP---AFIGNLRSLEILDLSL 334 (362)
Q Consensus 283 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~L~~ 334 (362)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888887752 33667777888888888888775544 3567778888887753
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3.6e-15 Score=121.70 Aligned_cols=133 Identities=23% Similarity=0.241 Sum_probs=97.5
Q ss_pred CcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEcc
Q 040025 206 LRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285 (362)
Q Consensus 206 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 285 (362)
.+.++++++.+. .+|..+ .++|+.|++++|.+. +..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467778777776 444333 367888888888543 3334456778888888888888886666667788888888888
Q ss_pred CCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCch
Q 040025 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELP 342 (362)
Q Consensus 286 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 342 (362)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888886666667778888888888888875555556778888888888888887654
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=8.7e-16 Score=138.21 Aligned_cols=242 Identities=13% Similarity=0.061 Sum_probs=154.4
Q ss_pred CCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcC--------CCCCCEEEcCCCCCCCCcccccC
Q 040025 97 LIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILE--------LSNLVSLDLSGNAYPGGILELRK 168 (362)
Q Consensus 97 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~--------l~~L~~L~l~~n~l~~~~~~~~~ 168 (362)
+++|+.|+|++|.+... ...-+.++.++.+.+..+.+ -+..|.+ +++|+.+++.+ .+
T Consensus 48 l~~L~~LdLs~n~i~~~--~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i--------- 112 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY--SGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KI--------- 112 (329)
T ss_dssp CTTCCEEEEEEEEECCE--EESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TC---------
T ss_pred hccCeEEecCcceeEEe--cCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cc---------
Confidence 66777777777765511 00111222234444443322 1233445 78888888776 33
Q ss_pred CCch-hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccC----CccCCccccCCCCCC-EEeCCCCC---
Q 040025 169 SSLT-NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLV----RGRIPSSLGNLLKLI-HLDLSQNQ--- 239 (362)
Q Consensus 169 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~~~~~L~-~L~l~~n~--- 239 (362)
..++ ..+..+++|+.+++..|.+.... +..|..+.++..+....... .......+.++..|+ .+.+....
T Consensus 113 ~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 113 KNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp CEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred cchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 2232 24567778888888877776554 56677666666665544211 111122233344444 22222111
Q ss_pred ---------------------CCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhh
Q 040025 240 ---------------------LLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIG 298 (362)
Q Consensus 240 ---------------------~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 298 (362)
............+++|+.+++++|+++.....+|..+++|+.|++.+| ++...+.+|.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 100000000113789999999999998777788999999999999998 7766677899
Q ss_pred CCCCCC-EEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeC
Q 040025 299 NLSSLK-ALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDL 356 (362)
Q Consensus 299 ~l~~L~-~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 356 (362)
.+++|+ .+++.+ .++...+..|.+|++|+.|++++|.++...+..|.++++|+.+..
T Consensus 271 ~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999 999998 676556688999999999999999999777778999999999864
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=119.80 Aligned_cols=128 Identities=25% Similarity=0.237 Sum_probs=106.8
Q ss_pred CEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEcc
Q 040025 182 ETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLS 261 (362)
Q Consensus 182 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~ 261 (362)
++++++++.++.. |..+ .++|++|++++|.+. .+|..+..+++|+.|++++|.+. .-.+..|..+++|++|+++
T Consensus 13 ~~l~~~~~~l~~i--p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVL--PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSC--CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcC--CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 6788888888754 3333 368999999999987 67788999999999999999654 3345678899999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccc
Q 040025 262 GNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 262 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 315 (362)
+|.+++..+..|..+++|+.|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999998888889999999999999999996666678889999999999998864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=2.8e-14 Score=116.38 Aligned_cols=133 Identities=25% Similarity=0.244 Sum_probs=104.6
Q ss_pred CCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEc
Q 040025 181 LETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDL 260 (362)
Q Consensus 181 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l 260 (362)
.+.++++++.++... .. ..++|++|++++|.+.+..+..+..+++|++|++++|.+. ...+..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p--~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP--TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCC--TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCC--CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 467888888876543 22 2368999999999988666666788899999999998553 333445678899999999
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCC
Q 040025 261 SGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLP 318 (362)
Q Consensus 261 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 318 (362)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999987777778889999999999999986555556788999999999998886554
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=5.9e-15 Score=120.32 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=92.8
Q ss_pred CcCCCCCCcEEEeecccCCccCCccccCC-CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCC
Q 040025 199 NLGNLSSLRFLSLNNCLVRGRIPSSLGNL-LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277 (362)
Q Consensus 199 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (362)
.+..+++|++|++++|.+. .++. +..+ ++|+.|++++|.+.. + ..+..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 4556778888888888877 3443 4444 378888888885533 3 4567777888888888887755445457777
Q ss_pred CCCEEEccCCcCCCccch--hhhCCCCCCEEecccCcccccCCc----cccCCCCCCEEEccCCcCC
Q 040025 278 SLKELDLSMNIFSGEVPA--VIGNLSSLKALTLVENNFSGDLPA----FIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~l~~~~~L~~L~L~~n~l~ 338 (362)
+|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888776 4554 6677778888888888776 4454 3667777888888777655
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=3.5e-13 Score=124.13 Aligned_cols=244 Identities=11% Similarity=0.067 Sum_probs=161.3
Q ss_pred ccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch
Q 040025 93 GLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT 172 (362)
Q Consensus 93 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 172 (362)
+|.++ +|+.+.+..+ +... -..+|.++ +|+.+.+.. .+...-+..|..+++|+.+++..|.+ ..++
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---------~~I~ 196 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---------TKLP 196 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---------SEEC
T ss_pred hcccC-CccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---------eEec
Confidence 45554 6777777655 3322 22345554 688888875 44444456677788888888887754 3344
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
.....+.+|+.+.+..+ +.... ...|.++++|+.+.+..+ +.......+.. .+|+.+.+.++ .... -...|..+
T Consensus 197 ~~aF~~~~L~~l~lp~~-l~~I~-~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I-~~~aF~~c 270 (401)
T 4fdw_A 197 ASTFVYAGIEEVLLPVT-LKEIG-SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNI-ASRAFYYC 270 (401)
T ss_dssp TTTTTTCCCSEEECCTT-CCEEC-TTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEE-CTTTTTTC
T ss_pred hhhEeecccCEEEeCCc-hheeh-hhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEE-ChhHhhCC
Confidence 33333578888888743 54444 567788888888888764 33233344555 67888888654 3221 14567788
Q ss_pred CCCCEEEccCCcCC-----ccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCC
Q 040025 253 GSLKELDLSGNILS-----SKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL 327 (362)
Q Consensus 253 ~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 327 (362)
++|+.+++.++.+. .....+|..+++|+.+.+.. .++.....+|..+.+|+.+.|..+ ++......|..+ +|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 88888888877654 34556778888888888874 466555667788888888888655 553445677777 88
Q ss_pred CEEEccCCcCCCCchhhhcCCC-CCCEEeCCCC
Q 040025 328 EILDLSLNKFSGELPVFIGNLP-SLEELDLSEN 359 (362)
Q Consensus 328 ~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n 359 (362)
+.+++.+|.+.......|..++ .++.|.+..+
T Consensus 348 ~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 348 KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 8888888877755556666664 6777777654
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.5e-14 Score=116.54 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=63.4
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCc-ccCCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPA-SIGNLGSL 255 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~-~l~~~~~L 255 (362)
.+.+|++|++++|.++.. +......++|++|++++|.+.+. ..+..+++|++|++++|.+. .+|. .+..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc--ccCcchhhcCCCC
Confidence 345555555555555432 22122223555555555555533 34555555555555555332 1232 22455555
Q ss_pred CEEEccCCcCCccCCc--cccCCCCCCEEEccCCcCCCccch----hhhCCCCCCEEecccCcc
Q 040025 256 KELDLSGNILSSKLPA--SIGNLSSLKELDLSMNIFSGEVPA----VIGNLSSLKALTLVENNF 313 (362)
Q Consensus 256 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 313 (362)
++|++++|.+. .+|. .+..+++|+.|++++|.++ ..|. .+..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555554 2333 4455555555555555554 2333 245555555555555544
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1e-14 Score=131.21 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCC-EEEccCCcCCCccchhhhCCCCCC
Q 040025 226 NLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLK-ELDLSMNIFSGEVPAVIGNLSSLK 304 (362)
Q Consensus 226 ~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~ 304 (362)
.+++|+.+++++|.+.. --...|..+++|+.+++..| +....+.+|..+++|+ .+++.+ .++...+.+|..+++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred hcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 37899999999885543 22446788999999999987 7666777899999999 999988 67766678899999999
Q ss_pred EEecccCcccccCCccccCCCCCCEEEc
Q 040025 305 ALTLVENNFSGDLPAFIGNLRSLEILDL 332 (362)
Q Consensus 305 ~L~L~~n~l~~~~~~~l~~~~~L~~L~L 332 (362)
.+++++|.+....+..|.++++|+.+..
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999988666778999999998863
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=3.5e-17 Score=136.32 Aligned_cols=136 Identities=25% Similarity=0.267 Sum_probs=75.3
Q ss_pred hhcCCCCCEEEcCCcCCCCCCCCC------CcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcc
Q 040025 175 AEKLTNLETLNLGLVSIFNTPIPH------NLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPAS 248 (362)
Q Consensus 175 ~~~l~~L~~L~l~~~~~~~~~l~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~ 248 (362)
+.....++.+++..+.+++.. +. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~-~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCC-TTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSH
T ss_pred HHhcccccCcchheeEecccc-CcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccch
Confidence 345566666666666665543 32 45556666666666666654 44 5555666666666666432 34444
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccc-hhhhCCCCCCEEecccCcccccC
Q 040025 249 IGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVP-AVIGNLSSLKALTLVENNFSGDL 317 (362)
Q Consensus 249 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 317 (362)
+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 4445556666666666553 23 34555556666666665553211 24555556666666666555443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=1.1e-13 Score=111.94 Aligned_cols=108 Identities=25% Similarity=0.275 Sum_probs=87.8
Q ss_pred CCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecc
Q 040025 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLV 309 (362)
Q Consensus 230 L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 309 (362)
.+.+++++|.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 11 ~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 578888888553 366554 3788999999999988778888889999999999999986666667888999999999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCCCCc
Q 040025 310 ENNFSGDLPAFIGNLRSLEILDLSLNKFSGEL 341 (362)
Q Consensus 310 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~ 341 (362)
+|.+++..+..+..+++|++|+|++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99988666667888889999999999887654
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.2e-13 Score=110.62 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=85.9
Q ss_pred CCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecc
Q 040025 230 LIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLV 309 (362)
Q Consensus 230 L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 309 (362)
-+.++++++.+ ..+|..+. ++|++|++++|.+.+..|..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 14 ~~~l~~~~n~l--~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRL--ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCC--CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 36788888855 34676553 789999999999988778888889999999999999886555566788899999999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 310 ENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 310 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
+|.+.+..+..+..+++|++|+|++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9988855555688888999999999988754
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=4.5e-12 Score=116.71 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=180.4
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCch-
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLT- 172 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~- 172 (362)
+..+..++.+.+.+. ++.. -..+|.++ +|+.+.+..+ +...-...|.+ .+|+.+.+..+ + ..+.
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l---------~~I~~ 173 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-L---------EQLKE 173 (401)
T ss_dssp EEECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-C---------CEECS
T ss_pred EEecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-c---------cEehH
Confidence 344578888888754 3322 23456665 7999999865 55444455666 47999999864 2 2222
Q ss_pred hhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCC
Q 040025 173 NLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNL 252 (362)
Q Consensus 173 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~ 252 (362)
..+..|++|+.+++..|.++... ...|. +.+|+.+.+..+ +.......+..+++|+.+++..+ +.... ...|..
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~-~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~-~~aF~~- 247 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLP-ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG-QEAFRE- 247 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEEC-TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC-TTTTTT-
T ss_pred HHhhCcccCCeeecCCCcceEec-hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc-cccccc-
Confidence 35678999999999999887665 55555 689999999854 55555667889999999999986 43311 334555
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCC-----CccchhhhCCCCCCEEecccCcccccCCccccCCCCC
Q 040025 253 GSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS-----GEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSL 327 (362)
Q Consensus 253 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 327 (362)
.+|+.+.+. +.+......+|..+++|+.+.+.++.+. .....+|..|++|+.+.|.+ .+.......|.+|.+|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 789999994 4566566788999999999999988664 34567788999999999995 4664556788899999
Q ss_pred CEEEccCCcCCCCchhhhcCCCCCCEEeCCCCCC
Q 040025 328 EILDLSLNKFSGELPVFIGNLPSLEELDLSENQL 361 (362)
Q Consensus 328 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 361 (362)
+.+.|..+ ++......|..+ +|+.+++.+|.+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 99999665 664556778889 999999999865
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=4.4e-16 Score=129.58 Aligned_cols=141 Identities=23% Similarity=0.238 Sum_probs=78.9
Q ss_pred cCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCcc
Q 040025 144 LELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSS 223 (362)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~ 223 (362)
.....++.++++.+.+.+.... -..+|..+..+++|++|++++|.+++. + .+..+++|++|++++|.+. .+|..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~--l~~l~~~~~~l~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPP--IEKMDATLSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTT--CCCCHHHHHHTTTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HhcccccCcchheeEeccccCc--HhhhhHHHhcCCCCCEEECCCCCCccc--c-ccccCCCCCEEECCCCCcc-cccch
Confidence 3344555555554443321111 033444566666666776666666552 3 5666666666666666665 45555
Q ss_pred ccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCCCcc
Q 040025 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLP-ASIGNLSSLKELDLSMNIFSGEV 293 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 293 (362)
+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 5555666666666664432 33 35556666666666666663222 34566666666666666665443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=6.7e-15 Score=134.25 Aligned_cols=184 Identities=22% Similarity=0.243 Sum_probs=127.2
Q ss_pred CCCCCEEEcCCcCCCCCC---CCCCcC-CCCCCcEEEeecccCCccCCccc-cCCCCCCEEeCCCCCCCccc---cCccc
Q 040025 178 LTNLETLNLGLVSIFNTP---IPHNLG-NLSSLRFLSLNNCLVRGRIPSSL-GNLLKLIHLDLSQNQLLSGE---IPASI 249 (362)
Q Consensus 178 l~~L~~L~l~~~~~~~~~---l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~---l~~~l 249 (362)
.+.|++|++++|.++... +...+. ..++|++|++++|.+.+.....+ ..+++|+.|++++|.+.... +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 578999999999987643 112222 33799999999998864433222 34568999999999654322 11222
Q ss_pred -CCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCcc----chhhhCCCCCCEEecccCccccc----
Q 040025 250 -GNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGEV----PAVIGNLSSLKALTLVENNFSGD---- 316 (362)
Q Consensus 250 -~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~---- 316 (362)
...++|++|++++|.+++. ++..+...++|++|+|++|.+++.. +..+..+++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3568899999999998753 4445567889999999999988533 45567788999999999998764
Q ss_pred CCccccCCCCCCEEEccCCcCCCCchhhhcCC---CC--CCEEe--CCCCCC
Q 040025 317 LPAFIGNLRSLEILDLSLNKFSGELPVFIGNL---PS--LEELD--LSENQL 361 (362)
Q Consensus 317 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~---~~--L~~L~--l~~n~l 361 (362)
+...+...++|++|+|++|.+++.....+..+ .. |+.+. +.+|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 33445567899999999999987655555443 21 66776 666554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.7e-12 Score=104.95 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=90.1
Q ss_pred CCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 040025 205 SLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284 (362)
Q Consensus 205 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 284 (362)
..+.+++++|.+. .+|..+ .++|++|++++|.+ ++-.+..+..+++|++|++++|++++..+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4578999999887 466555 37899999999955 4344677889999999999999999777777889999999999
Q ss_pred cCCcCCCccchhhhCCCCCCEEecccCcccccC
Q 040025 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSGDL 317 (362)
Q Consensus 285 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 317 (362)
++|.+++..+..+..+++|+.|+|++|.+....
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999766667889999999999999887543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=4e-12 Score=103.15 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=89.3
Q ss_pred CcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEcc
Q 040025 206 LRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLS 285 (362)
Q Consensus 206 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 285 (362)
-+.+++++|.+. .+|..+. ++|+.|++++|.+ ++..|..+..+++|+.|++++|++++..+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCc-cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 478999999886 6666554 7899999999965 44447778899999999999999997666677899999999999
Q ss_pred CCcCCCccchhhhCCCCCCEEecccCccccc
Q 040025 286 MNIFSGEVPAVIGNLSSLKALTLVENNFSGD 316 (362)
Q Consensus 286 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 316 (362)
+|.+++..+..+..+++|+.|+|++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999965555688899999999999988743
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.9e-14 Score=131.21 Aligned_cols=190 Identities=19% Similarity=0.177 Sum_probs=132.3
Q ss_pred CCCCCEEEcCCCCCCCCcccccCCCchhhhhc-CCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccc
Q 040025 146 LSNLVSLDLSGNAYPGGILELRKSSLTNLAEK-LTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSL 224 (362)
Q Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 224 (362)
+++|++|++++|.++.... ..+...+.. .++|++|++++|.+++..+......+++|++|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~----~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC----TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH----HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHH----HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 4789999999998643211 123333333 37999999999999765533334456789999999999875443333
Q ss_pred -----cCCCCCCEEeCCCCCCCcc---ccCcccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCc
Q 040025 225 -----GNLLKLIHLDLSQNQLLSG---EIPASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGE 292 (362)
Q Consensus 225 -----~~~~~L~~L~l~~n~~~~~---~l~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~ 292 (362)
...++|+.|++++|.+... .++..+...++|++|++++|.+++. ++..+...++|++|+|++|.++..
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 3468899999999965331 2344557788999999999998753 355667788999999999999854
Q ss_pred ----cchhhhCCCCCCEEecccCcccccCCccccCC---C--CCCEEE--ccCCcCCC
Q 040025 293 ----VPAVIGNLSSLKALTLVENNFSGDLPAFIGNL---R--SLEILD--LSLNKFSG 339 (362)
Q Consensus 293 ----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~---~--~L~~L~--L~~n~l~~ 339 (362)
+...+...++|+.|+|++|.+++.....+... . .|+.+. +..+.+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 33455667999999999999987555444332 2 266666 66665553
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.5e-11 Score=111.30 Aligned_cols=105 Identities=19% Similarity=0.137 Sum_probs=84.7
Q ss_pred EEeCCCC-CCCccccCcccCCCCCCCEEEccC-CcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecc
Q 040025 232 HLDLSQN-QLLSGEIPASIGNLGSLKELDLSG-NILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLV 309 (362)
Q Consensus 232 ~L~l~~n-~~~~~~l~~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 309 (362)
.++++++ .+. .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4677776 443 3777 88888999999986 88887777888899999999999999998778888889999999999
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCCCC
Q 040025 310 ENNFSGDLPAFIGNLRSLEILDLSLNKFSGE 340 (362)
Q Consensus 310 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 340 (362)
+|.+.+..+..+..++ |+.|+|.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9998855555555554 99999999988754
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=1.3e-10 Score=105.07 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=87.8
Q ss_pred cEEEeecc-cCCccCCccccCCCCCCEEeCCC-CCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEc
Q 040025 207 RFLSLNNC-LVRGRIPSSLGNLLKLIHLDLSQ-NQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDL 284 (362)
Q Consensus 207 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 284 (362)
..++.+++ .+. .+|. +..+++|+.|+|++ |.+ ++-.+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHL-QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSC-CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCC-CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688887 777 5777 99999999999996 744 4444567899999999999999999988889999999999999
Q ss_pred cCCcCCCccchhhhCCCCCCEEecccCcccc
Q 040025 285 SMNIFSGEVPAVIGNLSSLKALTLVENNFSG 315 (362)
Q Consensus 285 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 315 (362)
++|++++..+..+..++ |+.|+|.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999965555555555 9999999998874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=9e-11 Score=106.21 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=108.0
Q ss_pred hcCCCCCCEEEcCCCCCCCCcccc-cCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCC
Q 040025 143 ILELSNLVSLDLSGNAYPGGILEL-RKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIP 221 (362)
Q Consensus 143 l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~ 221 (362)
+..+++|+.|.+.........+.+ ....+...+..+|+|+.|.++++. +..++. + .+++|+.|.+..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~--~l~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN--NLSIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB--TCBCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC--Cceecc-c-cCCCCcEEEEecCCCChHHH
Confidence 445567777776554321111111 113466677778888888887762 112222 3 37888888888777654333
Q ss_pred cccc--CCCCCCEEeCCCC--CCC-c---cccCccc--CCCCCCCEEEccCCcCCccCCcccc---CCCCCCEEEccCCc
Q 040025 222 SSLG--NLLKLIHLDLSQN--QLL-S---GEIPASI--GNLGSLKELDLSGNILSSKLPASIG---NLSSLKELDLSMNI 288 (362)
Q Consensus 222 ~~~~--~~~~L~~L~l~~n--~~~-~---~~l~~~l--~~~~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~ 288 (362)
..+. .+++|+.|+|+.+ ... . ..+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 6788888887531 110 0 0111222 2467888888888877643333332 46778888888887
Q ss_pred CCCccc----hhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCc
Q 040025 289 FSGEVP----AVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNK 336 (362)
Q Consensus 289 l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 336 (362)
+++..+ ..+..+++|+.|++++|.+++..-..+...- ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 775432 2334567788888888877655443333211 3457777665
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.8e-09 Score=99.21 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=48.8
Q ss_pred cccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCC
Q 040025 272 SIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSL 351 (362)
Q Consensus 272 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 351 (362)
.+..+.+|+.+.+..+ ++.....++..+.+|+.++|..+ ++......|.+|.+|+.+.+..+ ++......|..|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3445566666666543 44334455666677777777543 33233455666777777777655 443344566667777
Q ss_pred CEEeCCC
Q 040025 352 EELDLSE 358 (362)
Q Consensus 352 ~~L~l~~ 358 (362)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7776643
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=3e-09 Score=97.79 Aligned_cols=166 Identities=12% Similarity=0.011 Sum_probs=114.1
Q ss_pred cCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCC
Q 040025 177 KLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLK 256 (362)
Q Consensus 177 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~ 256 (362)
...+|+.+.+.... +... ...+..+.+++.+.+..+... .....+..+..++.+......+ ....+..+.+|+
T Consensus 228 ~~~~l~~i~ip~~~-~~i~-~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~ 300 (394)
T 4fs7_A 228 SKTGVKNIIIPDSF-TELG-KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLT 300 (394)
T ss_dssp TTCCCCEEEECTTC-CEEC-SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCC
T ss_pred ccCCCceEEECCCc-eecc-cccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cccccccccccc
Confidence 34556666554321 2122 345667778888887765432 3344566777788777665421 123466788999
Q ss_pred EEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCc
Q 040025 257 ELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNK 336 (362)
Q Consensus 257 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 336 (362)
.+.+..+ +......+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++......|.+|.+|+.+++..+-
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~ 377 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL 377 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC
Confidence 9998754 55455677889999999999754 66555678899999999999876 554456688999999999997652
Q ss_pred CCCCchhhhcCCCCCCEE
Q 040025 337 FSGELPVFIGNLPSLEEL 354 (362)
Q Consensus 337 l~~~~~~~~~~~~~L~~L 354 (362)
. .+...|.++++|+.+
T Consensus 378 -~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 378 -E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -G-GGGGGBCTTCEEEEE
T ss_pred -E-EhhheecCCCCCcEE
Confidence 2 345678888888775
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=1.3e-10 Score=105.24 Aligned_cols=208 Identities=16% Similarity=0.180 Sum_probs=124.9
Q ss_pred CCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCC--------CCCCCCcCCCCCCcEEEeecccCC
Q 040025 146 LSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFN--------TPIPHNLGNLSSLRFLSLNNCLVR 217 (362)
Q Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------~~l~~~~~~~~~L~~L~l~~n~l~ 217 (362)
...++.|.+....+.+....-....+......+++|+.|.+....... ..+...+..+|+|+.|.+++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356788988866443100000001123345678899999997653321 112344566789999999887321
Q ss_pred ccCCccccCCCCCCEEeCCCCCCCccccCccc--CCCCCCCEEEccCC--cCCcc-----CCccc--cCCCCCCEEEccC
Q 040025 218 GRIPSSLGNLLKLIHLDLSQNQLLSGEIPASI--GNLGSLKELDLSGN--ILSSK-----LPASI--GNLSSLKELDLSM 286 (362)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l--~~~~~L~~L~l~~n--~l~~~-----~~~~l--~~l~~L~~L~L~~ 286 (362)
.++. + .+++|+.|++..+.+.... ...+ ..+++|+.|+|+.+ ...+. +...+ ..+++|+.|.|.+
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2332 3 3788999999887543322 2223 26888999988532 21111 11222 2478899999988
Q ss_pred CcCCCccchhhh---CCCCCCEEecccCcccccC----CccccCCCCCCEEEccCCcCCCCchhhhcC-CCCCCEEeCCC
Q 040025 287 NIFSGEVPAVIG---NLSSLKALTLVENNFSGDL----PAFIGNLRSLEILDLSLNKFSGELPVFIGN-LPSLEELDLSE 358 (362)
Q Consensus 287 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~ 358 (362)
|.+.+..+..+. .+++|+.|+|+.|.+.+.. +..+..+++|+.|+|++|.+++.....+.. + ...+++++
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 887754443333 4678999999888887643 333345688999999988887655544443 2 34567766
Q ss_pred C
Q 040025 359 N 359 (362)
Q Consensus 359 n 359 (362)
+
T Consensus 340 ~ 340 (362)
T 2ra8_A 340 S 340 (362)
T ss_dssp B
T ss_pred C
Confidence 5
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=4.6e-08 Score=89.84 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=60.6
Q ss_pred ccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCCCccchhhhCCCCC
Q 040025 224 LGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSL 303 (362)
Q Consensus 224 ~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 303 (362)
+..+..|+.+.+..+ .... -...+..++.|+.+.+. +.+......+|..+.+|+.+.+..+ ++.....+|.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I-~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSI-GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEE-CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-ccee-cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 344455555555443 1111 12334455666666654 2333334445566666666666543 443344556666666
Q ss_pred CEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCCCCC
Q 040025 304 KALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 304 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 360 (362)
+.+.|..+ ++......|.+|.+|+.+++.++... ...+..+..|+.+.+..|.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 66666543 33233345666666666666655332 1344555666666665543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.95 E-value=6e-08 Score=89.09 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=154.4
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCC---CCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCC
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGND---FRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNL 149 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L 149 (362)
.++.+.+... ++..-.. +|.+|.+|+.+.+..+. ++.. -..+|..+.+|+.+.+..+ +...-...+..+.+|
T Consensus 65 ~L~sI~iP~s-vt~Ig~~--AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSN--AFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CCEECTT--TTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-eeEEhHH--HhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 3677777642 4433333 78899999999887552 2221 1235677777777766543 232333456667777
Q ss_pred CEEEcCCCCCCCCcccccCCCc-hhhhhcCCCCCEEEcCCcCCCCCC---------------------CCCCcCCCCCCc
Q 040025 150 VSLDLSGNAYPGGILELRKSSL-TNLAEKLTNLETLNLGLVSIFNTP---------------------IPHNLGNLSSLR 207 (362)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---------------------l~~~~~~~~~L~ 207 (362)
+.+.+..+. ..+ ...+..+..|+.+.+..+ ++... -...+..+.+++
T Consensus 140 ~~i~lp~~~----------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~ 208 (394)
T 4gt6_A 140 DTVTIPEGV----------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALS 208 (394)
T ss_dssp CEEECCTTC----------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCC
T ss_pred cccccccee----------eeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccc
Confidence 777775442 111 122344555665555433 11111 012233344444
Q ss_pred EEEeecccCCccCCc-------------cccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCcccc
Q 040025 208 FLSLNNCLVRGRIPS-------------SLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIG 274 (362)
Q Consensus 208 ~L~l~~n~l~~~~~~-------------~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 274 (362)
............... .......+..+.+... ... --...|..+..|+.+.+..+.. .....+|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~-i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~ 285 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR-IETHAFDSCAYLASVKMPDSVV-SIGTGAFM 285 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE-ECTTTTTTCSSCCEEECCTTCC-EECTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCCc-ceE-cccceeeecccccEEecccccc-eecCcccc
Confidence 443332221100000 0011122233333222 111 1123567788999999876543 24556788
Q ss_pred CCCCCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEE
Q 040025 275 NLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEEL 354 (362)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 354 (362)
++++|+.+.+.. .++.....+|..+.+|+.+.|..+ ++......|.+|.+|+.+.|..+ ++......|.+|++|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 899999999964 455455667889999999999865 44344567889999999999755 665556789999999999
Q ss_pred eCCCCC
Q 040025 355 DLSENQ 360 (362)
Q Consensus 355 ~l~~n~ 360 (362)
++.++.
T Consensus 363 ~~~~~~ 368 (394)
T 4gt6_A 363 EYSGSR 368 (394)
T ss_dssp EESSCH
T ss_pred EECCce
Confidence 998763
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.83 E-value=1.5e-09 Score=88.78 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCCCCCEEEccCCcCCCc----cchhhhCCCCCCEEecccCccccc----CCccccCCCCCCEEEc--cCCcCCCC----
Q 040025 275 NLSSLKELDLSMNIFSGE----VPAVIGNLSSLKALTLVENNFSGD----LPAFIGNLRSLEILDL--SLNKFSGE---- 340 (362)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~L--~~n~l~~~---- 340 (362)
..++|++|+|++|.++.. +...+...++|++|+|++|.+.+. +...+...++|++|+| ++|.+.+.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344455555555544422 122233334455555555544432 2223334445555555 44555432
Q ss_pred chhhhcCCCCCCEEeCCCCC
Q 040025 341 LPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 341 ~~~~~~~~~~L~~L~l~~n~ 360 (362)
+...+...++|++|+|++|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 22233334555555555554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=1.4e-06 Score=79.38 Aligned_cols=77 Identities=6% Similarity=0.041 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEE
Q 040025 73 HVFKLDLSNSCLQGSINSSSGLFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSL 152 (362)
Q Consensus 73 ~v~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L 152 (362)
.++.+.+.. +++..-.. +|.+|.+|+.++|..+ ++.. -..+|..+ +|+.+.+..+ +...-...+.. .+|+.+
T Consensus 47 ~i~~v~ip~-~vt~Ig~~--aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEA--NFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GCSEEEECT-TEEEECTT--TTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred CCEEEEeCC-CccChHHH--HhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 345555542 23322222 6888888888888654 3322 12345555 5666666432 22122222333 367777
Q ss_pred EcCCC
Q 040025 153 DLSGN 157 (362)
Q Consensus 153 ~l~~n 157 (362)
.+..+
T Consensus 119 ~lp~~ 123 (379)
T 4h09_A 119 EFPGA 123 (379)
T ss_dssp ECCTT
T ss_pred cCCCc
Confidence 77554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.1e-08 Score=83.63 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=16.7
Q ss_pred CCCCCCEEECCCC-ccccc----CchhhcCCCCCCEEEcCCCCC
Q 040025 121 NLSRLSYLNLSDS-FFIGQ----IPSEILELSNLVSLDLSGNAY 159 (362)
Q Consensus 121 ~l~~L~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~l~~n~l 159 (362)
..++|++|++++| .+... +...+...++|++|+|++|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i 77 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS 77 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 3444444444444 33211 223333444555555555544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.58 E-value=2.5e-08 Score=79.82 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=73.1
Q ss_pred cCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCc-CCCccchhhhCC----CCCCEEecccCc-ccccCC
Q 040025 245 IPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNI-FSGEVPAVIGNL----SSLKALTLVENN-FSGDLP 318 (362)
Q Consensus 245 l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~ 318 (362)
+|.....-.+|+.|++++|.++...-..+..+++|++|+|++|. +++.....+..+ ++|++|+|++|. +++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44433233579999999999887666677889999999999985 776555666654 479999999984 877666
Q ss_pred ccccCCCCCCEEEccCCc-CCC
Q 040025 319 AFIGNLRSLEILDLSLNK-FSG 339 (362)
Q Consensus 319 ~~l~~~~~L~~L~L~~n~-l~~ 339 (362)
..+..+++|++|+|++|. +++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 667789999999999996 553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=6.6e-10 Score=95.64 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=50.6
Q ss_pred cCCCCCCEEEcCCCCCCCCcccccCCCchhhhhcCCCCCEEEcCCcCCCCCCCCCCcCCCCCCcEEEeecccCCccCCc-
Q 040025 144 LELSNLVSLDLSGNAYPGGILELRKSSLTNLAEKLTNLETLNLGLVSIFNTPIPHNLGNLSSLRFLSLNNCLVRGRIPS- 222 (362)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~~~~~- 222 (362)
.++++|+.|+|++|.+.+- ..++..+..+++|+.|+|++|.+.+..-...+..+ +|++|++++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcc
Confidence 4567788888888876321 23445566777777777777777665212233333 677777777776654441
Q ss_pred ------cccCCCCCCEEe
Q 040025 223 ------SLGNLLKLIHLD 234 (362)
Q Consensus 223 ------~~~~~~~L~~L~ 234 (362)
.+..+++|+.||
T Consensus 240 ~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHCTTCCEES
T ss_pred hhHHHHHHHHCcccCeEC
Confidence 244556666655
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.5e-07 Score=75.27 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCc-CCccCCccccCC----CCCCEEEccCCc-CCCccchhhhCCC
Q 040025 228 LKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNI-LSSKLPASIGNL----SSLKELDLSMNI-FSGEVPAVIGNLS 301 (362)
Q Consensus 228 ~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~ 301 (362)
..|+.||+++|.+....+ ..+..+++|++|++++|. +++..-..++.+ ++|++|+|++|. ++......+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 457777777776443333 345677777777777774 555444444443 367777777764 6655555666777
Q ss_pred CCCEEecccCc
Q 040025 302 SLKALTLVENN 312 (362)
Q Consensus 302 ~L~~L~L~~n~ 312 (362)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777774
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.40 E-value=4e-05 Score=69.67 Aligned_cols=246 Identities=9% Similarity=0.031 Sum_probs=145.2
Q ss_pred cccCCCCCEEEcCCCCCCCCCCCccCCCCCCCCEEECCCCcccccCchhhcCCCCCCEEEcCCCCCCCCcccccCCCchh
Q 040025 94 LFNLIHLEWLNLAGNDFRYSEIPPGIANLSRLSYLNLSDSFFIGQIPSEILELSNLVSLDLSGNAYPGGILELRKSSLTN 173 (362)
Q Consensus 94 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 173 (362)
+....+|+.+.+... ++.. -..+|.+|.+|+.+.+..+ +...-...|.++ +|+.+.+..+- ..+..
T Consensus 42 ~~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~l----------~~I~~ 107 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMERV----------KKFGD 107 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTTC----------CEECT
T ss_pred cccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCcee----------eEecc
Confidence 556778999998754 3322 2346899999999999754 443344556665 67777776541 22222
Q ss_pred hhhcCCCCCEEEcCCcCC---------------------CCCCCCCCcCCCCCCcEEEeecccCCc------------c-
Q 040025 174 LAEKLTNLETLNLGLVSI---------------------FNTPIPHNLGNLSSLRFLSLNNCLVRG------------R- 219 (362)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~---------------------~~~~l~~~~~~~~~L~~L~l~~n~l~~------------~- 219 (362)
......+|+.+.+..+.. +... ...+..+.+++.+.+..+.... .
T Consensus 108 ~aF~~~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 108 YVFQGTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred ceeccCCcccccCCCccccccccccccceeeeeeccceeeccc-cchhcccccccccccccccceeecccceecccccce
Confidence 222223577776643311 1111 2234455566665554322110 0
Q ss_pred ----------------------CCccccCCCCCCEEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCC
Q 040025 220 ----------------------IPSSLGNLLKLIHLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLS 277 (362)
Q Consensus 220 ----------------------~~~~~~~~~~L~~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 277 (362)
....+..+..|+.+.+..+ ... --...+..+..|+.+.+..+ ++.....++..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 187 LESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp EEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred eccccccccccccccccceeEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-ccEeCccccceee
Confidence 0011222334444444433 111 11233456677777777654 4434455677788
Q ss_pred CCCEEEccCCcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCCCCchhhhcCCCCCCEEeCC
Q 040025 278 SLKELDLSMNIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFSGELPVFIGNLPSLEELDLS 357 (362)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 357 (362)
+|+.+.+..+ ++.....++..+.+|+.+.+.++.+.......|.+|.+|+.+.|..+ ++......|.+|.+|+.+.+.
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 8888888654 44344556788899999999888777555678888999999999754 553445678888999988875
Q ss_pred CC
Q 040025 358 EN 359 (362)
Q Consensus 358 ~n 359 (362)
.+
T Consensus 342 ~~ 343 (379)
T 4h09_A 342 KS 343 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=4.8e-07 Score=77.78 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCCCCEEEccCCcCCc--cCCccccCCCCCCEEEccCCcCC
Q 040025 252 LGSLKELDLSGNILSS--KLPASIGNLSSLKELDLSMNIFS 290 (362)
Q Consensus 252 ~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 290 (362)
+++|+.|++++|.+++ .++..+..+++|+.|+|++|.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4455555555555544 22333344455555555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.82 E-value=1.8e-05 Score=64.35 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCCCCEEeCCCC-CCCcc---ccCcccCCCCCCCEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCCCcc----
Q 040025 226 NLLKLIHLDLSQN-QLLSG---EIPASIGNLGSLKELDLSGNILSSK----LPASIGNLSSLKELDLSMNIFSGEV---- 293 (362)
Q Consensus 226 ~~~~L~~L~l~~n-~~~~~---~l~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~---- 293 (362)
+-+.|+.|+|+++ .+-.. .+.+.+..-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|+...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666553 22111 1223344445566666666655432 2222233355556666555555322
Q ss_pred chhhhCCCCCCEEeccc
Q 040025 294 PAVIGNLSSLKALTLVE 310 (362)
Q Consensus 294 ~~~l~~l~~L~~L~L~~ 310 (362)
.+++.....|+.|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22233344455555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=7.3e-05 Score=60.81 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=62.4
Q ss_pred cCCCCCCCEEEccCC-cCCcc----CCccccCCCCCCEEEccCCcCCCc----cchhhhCCCCCCEEecccCcccccC--
Q 040025 249 IGNLGSLKELDLSGN-ILSSK----LPASIGNLSSLKELDLSMNIFSGE----VPAVIGNLSSLKALTLVENNFSGDL-- 317 (362)
Q Consensus 249 l~~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~-- 317 (362)
+..-+.|++|+++++ .+... +.+.+..-+.|+.|+|++|.+... +...+...+.|+.|+|++|.|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777664 55432 334445556677777777766632 2334445566777777777666432
Q ss_pred --CccccCCCCCCEEEccCCc---CCCC----chhhhcCCCCCCEEeCCCCC
Q 040025 318 --PAFIGNLRSLEILDLSLNK---FSGE----LPVFIGNLPSLEELDLSENQ 360 (362)
Q Consensus 318 --~~~l~~~~~L~~L~L~~n~---l~~~----~~~~~~~~~~L~~L~l~~n~ 360 (362)
-..+..-..|++|+|++|. +... +...+...+.|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2234445567777776542 2221 33445556667777766553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.98 E-value=0.0016 Score=49.32 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=37.0
Q ss_pred CEEEccCCcCC-CccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCCcCC
Q 040025 280 KELDLSMNIFS-GEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLNKFS 338 (362)
Q Consensus 280 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 338 (362)
..++.+++.++ ..+|..+ .++|+.|+|++|.|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36667777665 2345432 246778888888777544556667777778888777665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.012 Score=44.36 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=36.1
Q ss_pred EEeCCCCCCCccccCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEEccCCcCC
Q 040025 232 HLDLSQNQLLSGEIPASIGNLGSLKELDLSGNILSSKLPASIGNLSSLKELDLSMNIFS 290 (362)
Q Consensus 232 ~L~l~~n~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 290 (362)
.++.+++.+....+|..+ .++++.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566666644312345432 245777777777777655666677777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.55 E-value=25 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=16.6
Q ss_pred ccccCCCCCCEEEccCCcCCCccchhhhCCCCCCEEecc
Q 040025 271 ASIGNLSSLKELDLSMNIFSGEVPAVIGNLSSLKALTLV 309 (362)
Q Consensus 271 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 309 (362)
.+|.++.+|+.+.+-.+ ++.....+|..|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444445554444332 222333344445555555444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.70 E-value=25 Score=24.45 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.1
Q ss_pred CcCCCccchhhhCCCCCCEEecccCcccccCCccccCCCCCCEEEccCC
Q 040025 287 NIFSGEVPAVIGNLSSLKALTLVENNFSGDLPAFIGNLRSLEILDLSLN 335 (362)
Q Consensus 287 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n 335 (362)
..++.....+|.+|.+|+.+.|-.+ ++......|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555677889999999999875 33344567889999999998764
Done!