Query 040027
Match_columns 595
No_of_seqs 669 out of 3899
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 04:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.4E-65 5.2E-70 534.5 65.8 512 39-558 378-916 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 4.2E-66 9.2E-71 552.1 51.9 517 39-584 129-655 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.1E-63 1.1E-67 517.1 65.4 510 47-569 353-894 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.6E-64 7.7E-69 537.3 54.9 510 37-574 158-674 (857)
5 PLN03081 pentatricopeptide (PP 100.0 6E-59 1.3E-63 485.3 52.2 469 65-555 85-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.5E-58 2E-62 476.3 50.6 476 92-590 83-564 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-34 7E-39 314.9 66.1 515 42-580 374-894 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-33 7.1E-38 306.9 67.2 518 41-580 305-860 (899)
9 PRK11447 cellulose synthase su 100.0 3.1E-26 6.8E-31 251.3 65.0 527 42-581 39-735 (1157)
10 PRK11447 cellulose synthase su 100.0 4.1E-25 9E-30 242.5 63.7 500 39-555 70-745 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.1E-26 2.5E-31 215.5 36.3 444 31-498 48-501 (966)
12 PRK09782 bacteriophage N4 rece 100.0 2.6E-23 5.6E-28 217.8 60.7 504 42-580 55-700 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 2.8E-25 6E-30 206.4 40.2 479 52-569 19-502 (966)
14 KOG2002 TPR-containing nuclear 100.0 9.6E-24 2.1E-28 206.5 46.6 508 29-551 197-745 (1018)
15 PRK09782 bacteriophage N4 rece 99.9 5.1E-21 1.1E-25 200.7 56.4 314 252-578 386-732 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-21 4.5E-26 200.5 52.7 428 99-551 130-571 (615)
17 KOG2002 TPR-containing nuclear 99.9 4.2E-21 9.2E-26 188.2 45.0 520 42-577 175-736 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 8.4E-20 1.8E-24 188.6 51.1 424 133-581 129-566 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.7E-26 191.3 34.4 312 250-574 43-364 (389)
20 PRK15174 Vi polysaccharide exp 99.9 7.5E-20 1.6E-24 188.1 46.6 356 97-480 43-402 (656)
21 PRK10049 pgaA outer membrane p 99.9 3.7E-19 7.9E-24 187.1 51.8 419 101-567 20-470 (765)
22 PRK15174 Vi polysaccharide exp 99.9 1.5E-19 3.3E-24 185.8 47.5 357 41-411 15-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 5.8E-19 1.3E-23 185.6 51.4 432 52-528 3-466 (765)
24 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.7E-25 185.2 35.8 304 105-452 44-353 (389)
25 PRK14574 hmsH outer membrane p 99.9 1.1E-17 2.4E-22 172.2 52.6 423 42-480 45-512 (822)
26 PRK14574 hmsH outer membrane p 99.9 2.6E-17 5.7E-22 169.5 54.9 449 96-564 34-524 (822)
27 KOG0495 HAT repeat protein [RN 99.9 1.5E-17 3.3E-22 156.4 47.5 515 46-589 361-887 (913)
28 KOG2076 RNA polymerase III tra 99.9 2.7E-17 5.9E-22 160.8 47.5 361 37-407 145-551 (895)
29 KOG1915 Cell cycle control pro 99.9 7.8E-17 1.7E-21 146.1 46.8 438 94-551 105-585 (677)
30 KOG2003 TPR repeat-containing 99.9 1.2E-18 2.6E-23 156.9 33.8 473 96-584 201-723 (840)
31 KOG0495 HAT repeat protein [RN 99.9 1.5E-16 3.2E-21 149.9 46.0 507 28-563 373-891 (913)
32 KOG1915 Cell cycle control pro 99.9 7.7E-16 1.7E-20 139.7 46.1 449 95-565 72-548 (677)
33 KOG2003 TPR repeat-containing 99.8 5.3E-17 1.1E-21 146.4 29.5 426 102-537 243-709 (840)
34 KOG2076 RNA polymerase III tra 99.8 4E-15 8.7E-20 145.9 38.4 362 213-579 145-548 (895)
35 KOG4422 Uncharacterized conser 99.8 1.6E-13 3.4E-18 123.4 42.4 306 96-412 116-463 (625)
36 KOG4422 Uncharacterized conser 99.8 9.6E-14 2.1E-18 124.8 40.7 442 38-508 122-617 (625)
37 KOG0547 Translocase of outer m 99.7 2.4E-14 5.3E-19 130.7 32.9 87 99-188 118-205 (606)
38 KOG0547 Translocase of outer m 99.7 3E-14 6.5E-19 130.1 33.1 226 284-516 333-566 (606)
39 KOG1155 Anaphase-promoting com 99.7 6.6E-12 1.4E-16 114.4 43.4 256 251-515 236-494 (559)
40 KOG1155 Anaphase-promoting com 99.7 1.9E-12 4.1E-17 117.9 39.9 365 128-515 161-535 (559)
41 KOG2047 mRNA splicing factor [ 99.7 1.9E-11 4.2E-16 115.8 48.0 524 48-585 43-657 (835)
42 PF13429 TPR_15: Tetratricopep 99.7 9.8E-17 2.1E-21 149.0 12.2 262 282-550 13-276 (280)
43 PRK10747 putative protoheme IX 99.7 3.8E-13 8.3E-18 130.7 36.2 221 320-550 161-389 (398)
44 KOG1173 Anaphase-promoting com 99.7 1.4E-12 3E-17 121.8 37.5 462 95-569 15-534 (611)
45 PRK10747 putative protoheme IX 99.7 4E-13 8.6E-18 130.6 35.5 283 144-445 97-389 (398)
46 TIGR00540 hemY_coli hemY prote 99.7 4.8E-13 1E-17 130.8 35.5 290 253-549 95-397 (409)
47 TIGR00540 hemY_coli hemY prote 99.7 6.8E-13 1.5E-17 129.7 35.4 295 178-515 96-398 (409)
48 PF13429 TPR_15: Tetratricopep 99.7 5.1E-16 1.1E-20 144.2 12.5 261 101-374 13-275 (280)
49 KOG1126 DNA-binding cell divis 99.7 2.8E-14 6.1E-19 135.8 23.6 282 257-550 334-619 (638)
50 COG3071 HemY Uncharacterized e 99.7 1.9E-12 4.2E-17 116.0 33.1 287 255-551 97-390 (400)
51 KOG1173 Anaphase-promoting com 99.7 2.9E-12 6.3E-17 119.7 34.9 474 40-532 25-532 (611)
52 KOG3785 Uncharacterized conser 99.7 5.6E-12 1.2E-16 110.8 34.5 422 105-561 31-498 (557)
53 KOG1126 DNA-binding cell divis 99.6 1.1E-13 2.4E-18 131.8 25.5 279 292-583 334-617 (638)
54 KOG2047 mRNA splicing factor [ 99.6 1.2E-09 2.6E-14 103.9 50.2 509 47-574 84-711 (835)
55 COG2956 Predicted N-acetylgluc 99.6 2.5E-12 5.4E-17 111.7 29.9 286 220-515 48-346 (389)
56 COG2956 Predicted N-acetylgluc 99.6 3.4E-12 7.3E-17 110.9 29.9 291 144-444 48-345 (389)
57 COG3071 HemY Uncharacterized e 99.6 8.8E-12 1.9E-16 111.9 33.4 287 144-446 97-390 (400)
58 KOG3785 Uncharacterized conser 99.6 1.6E-10 3.4E-15 101.9 38.0 430 102-574 63-538 (557)
59 KOG1156 N-terminal acetyltrans 99.6 5.1E-10 1.1E-14 106.7 43.9 451 45-515 21-510 (700)
60 KOG4162 Predicted calmodulin-b 99.6 5.7E-10 1.2E-14 108.6 43.8 434 106-551 294-783 (799)
61 KOG1156 N-terminal acetyltrans 99.6 2E-09 4.4E-14 102.7 43.5 450 106-580 17-505 (700)
62 KOG1174 Anaphase-promoting com 99.5 5.3E-09 1.1E-13 94.4 42.8 301 252-563 206-511 (564)
63 PRK12370 invasion protein regu 99.5 1E-11 2.2E-16 126.2 28.3 261 45-341 275-535 (553)
64 KOG1129 TPR repeat-containing 99.5 2.1E-12 4.7E-17 112.2 18.8 233 316-556 227-461 (478)
65 KOG1129 TPR repeat-containing 99.5 8.6E-12 1.9E-16 108.5 22.3 230 135-376 227-458 (478)
66 KOG1174 Anaphase-promoting com 99.5 2.4E-09 5.2E-14 96.6 37.4 400 165-588 96-502 (564)
67 TIGR02521 type_IV_pilW type IV 99.5 4.6E-11 1E-15 108.4 27.9 203 94-305 29-231 (234)
68 KOG4162 Predicted calmodulin-b 99.5 2.4E-09 5.3E-14 104.3 40.1 416 92-516 319-783 (799)
69 PRK12370 invasion protein regu 99.5 9E-11 1.9E-15 119.4 31.2 269 128-412 253-536 (553)
70 KOG2376 Signal recognition par 99.5 1.3E-08 2.8E-13 96.3 41.9 222 99-342 15-254 (652)
71 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4.2E-15 104.3 26.6 199 347-550 31-231 (234)
72 KOG2376 Signal recognition par 99.4 2.4E-08 5.1E-13 94.6 40.1 457 40-549 21-518 (652)
73 KOG4318 Bicoid mRNA stability 99.4 1.9E-09 4.2E-14 106.3 33.8 101 453-553 492-596 (1088)
74 COG3063 PilF Tfp pilus assembl 99.4 1.7E-10 3.7E-15 96.0 21.6 200 31-270 35-235 (250)
75 KOG0548 Molecular co-chaperone 99.4 6.7E-09 1.4E-13 97.3 34.5 99 40-141 11-114 (539)
76 PF12569 NARP1: NMDA receptor- 99.4 2.6E-08 5.6E-13 97.9 40.1 297 98-410 6-333 (517)
77 KOG0548 Molecular co-chaperone 99.4 1.7E-08 3.6E-13 94.7 35.2 434 104-568 10-471 (539)
78 PF12569 NARP1: NMDA receptor- 99.4 6.7E-09 1.4E-13 102.0 33.3 296 210-515 7-333 (517)
79 KOG1127 TPR repeat-containing 99.4 6.2E-09 1.4E-13 104.1 32.8 154 38-195 499-659 (1238)
80 COG3063 PilF Tfp pilus assembl 99.3 3.2E-09 6.9E-14 88.5 24.7 200 98-306 37-236 (250)
81 KOG1840 Kinesin light chain [C 99.3 6.2E-10 1.3E-14 107.7 23.4 243 97-339 200-477 (508)
82 KOG0985 Vesicle coat protein c 99.3 5.9E-08 1.3E-12 97.3 36.6 441 42-549 849-1306(1666)
83 PRK11189 lipoprotein NlpI; Pro 99.3 4.4E-09 9.5E-14 97.9 26.5 94 315-410 67-160 (296)
84 PRK11189 lipoprotein NlpI; Pro 99.3 7.4E-09 1.6E-13 96.4 28.0 94 350-445 67-160 (296)
85 KOG1840 Kinesin light chain [C 99.3 1.6E-09 3.5E-14 104.9 24.0 247 128-374 196-477 (508)
86 KOG4340 Uncharacterized conser 99.3 1.6E-08 3.5E-13 87.4 26.3 420 99-551 13-443 (459)
87 KOG4318 Bicoid mRNA stability 99.3 9E-09 1.9E-13 101.8 27.5 86 344-432 201-286 (1088)
88 KOG0624 dsRNA-activated protei 99.2 5.2E-07 1.1E-11 79.9 33.8 192 284-480 162-369 (504)
89 KOG1127 TPR repeat-containing 99.2 2.1E-07 4.6E-12 93.5 35.2 501 45-574 472-1024(1238)
90 KOG1914 mRNA cleavage and poly 99.2 3.2E-06 6.8E-11 79.7 40.5 434 95-538 19-526 (656)
91 KOG3617 WD40 and TPR repeat-co 99.2 2.1E-07 4.5E-12 91.6 33.9 479 32-552 729-1360(1416)
92 cd05804 StaR_like StaR_like; a 99.2 2.5E-07 5.3E-12 89.8 35.0 202 95-306 5-215 (355)
93 cd05804 StaR_like StaR_like; a 99.2 2.4E-07 5.2E-12 89.9 34.2 264 102-375 49-335 (355)
94 KOG1125 TPR repeat-containing 99.2 5.4E-09 1.2E-13 98.8 21.1 250 285-540 293-560 (579)
95 KOG4340 Uncharacterized conser 99.2 9.9E-08 2.1E-12 82.6 25.8 262 96-372 44-335 (459)
96 KOG1125 TPR repeat-containing 99.1 6.3E-09 1.4E-13 98.3 20.0 236 26-304 280-525 (579)
97 KOG2053 Mitochondrial inherita 99.1 1.5E-05 3.2E-10 80.0 49.8 526 41-592 19-617 (932)
98 KOG3616 Selective LIM binding 99.1 1.1E-06 2.3E-11 85.7 33.5 167 319-512 739-907 (1636)
99 PRK04841 transcriptional regul 99.1 1.8E-06 3.9E-11 95.0 40.6 338 215-552 382-761 (903)
100 KOG3617 WD40 and TPR repeat-co 99.1 3.9E-06 8.4E-11 83.0 37.2 239 66-338 725-993 (1416)
101 PRK04841 transcriptional regul 99.1 1.1E-06 2.5E-11 96.6 38.5 337 175-517 383-761 (903)
102 PF13041 PPR_2: PPR repeat fam 99.1 4E-10 8.7E-15 72.8 6.4 49 485-533 1-49 (50)
103 PF04733 Coatomer_E: Coatomer 99.1 9.9E-09 2.1E-13 93.9 17.8 149 391-550 111-264 (290)
104 KOG0624 dsRNA-activated protei 99.1 2.8E-06 6.1E-11 75.4 31.5 320 94-447 36-371 (504)
105 KOG1914 mRNA cleavage and poly 99.0 1.9E-05 4.1E-10 74.7 42.2 432 128-574 17-527 (656)
106 PF13041 PPR_2: PPR repeat fam 99.0 8.9E-10 1.9E-14 71.1 6.7 50 520-569 1-50 (50)
107 KOG0985 Vesicle coat protein c 99.0 2.3E-05 5.1E-10 79.4 38.3 325 87-464 973-1325(1666)
108 PF04733 Coatomer_E: Coatomer 99.0 3E-08 6.5E-13 90.7 16.5 252 103-376 8-265 (290)
109 KOG1128 Uncharacterized conser 98.9 4.7E-07 1E-11 88.3 24.0 233 314-568 400-634 (777)
110 KOG1070 rRNA processing protei 98.9 1.8E-06 3.8E-11 90.2 27.5 214 87-310 1449-1667(1710)
111 PLN02789 farnesyltranstransfer 98.9 7.4E-06 1.6E-10 76.2 28.7 216 97-324 38-267 (320)
112 PLN02789 farnesyltranstransfer 98.9 4.1E-06 8.9E-11 77.9 26.7 218 325-549 50-300 (320)
113 KOG3616 Selective LIM binding 98.9 2.5E-05 5.3E-10 76.6 32.2 316 69-440 591-931 (1636)
114 COG5010 TadD Flp pilus assembl 98.9 3.7E-07 8E-12 78.3 17.8 178 45-234 47-229 (257)
115 PRK10370 formate-dependent nit 98.8 8.2E-07 1.8E-11 76.7 19.6 123 430-557 52-178 (198)
116 KOG3060 Uncharacterized conser 98.8 3.4E-06 7.4E-11 71.8 22.3 187 361-551 26-220 (289)
117 KOG1070 rRNA processing protei 98.8 3.6E-06 7.8E-11 88.0 26.8 198 279-481 1460-1663(1710)
118 COG5010 TadD Flp pilus assembl 98.8 1.2E-06 2.6E-11 75.2 19.5 159 386-549 70-229 (257)
119 KOG2053 Mitochondrial inherita 98.8 0.00024 5.1E-09 71.8 46.6 122 455-579 439-563 (932)
120 TIGR03302 OM_YfiO outer membra 98.8 2.3E-06 4.9E-11 77.4 22.7 187 93-306 30-232 (235)
121 KOG1128 Uncharacterized conser 98.8 4.7E-07 1E-11 88.3 18.7 216 280-516 401-616 (777)
122 TIGR03302 OM_YfiO outer membra 98.7 2.2E-06 4.9E-11 77.5 20.0 187 128-341 30-232 (235)
123 PRK14720 transcript cleavage f 98.7 7.9E-06 1.7E-10 84.7 25.8 220 94-358 29-268 (906)
124 PRK10370 formate-dependent nit 98.7 1E-06 2.2E-11 76.1 16.8 100 95-196 72-174 (198)
125 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 71.8 15.1 112 95-215 23-134 (144)
126 PRK14720 transcript cleavage f 98.7 2E-05 4.4E-10 81.8 26.8 239 204-498 28-268 (906)
127 PRK15359 type III secretion sy 98.6 2.4E-06 5.1E-11 69.8 15.9 93 455-550 27-120 (144)
128 KOG3081 Vesicle coat complex C 98.6 4.7E-05 1E-09 65.6 23.5 87 251-341 146-236 (299)
129 PRK15179 Vi polysaccharide bio 98.6 2E-05 4.3E-10 81.1 25.5 141 381-526 85-226 (694)
130 KOG3081 Vesicle coat complex C 98.6 9.5E-05 2.1E-09 63.8 24.9 88 215-306 145-236 (299)
131 PRK15179 Vi polysaccharide bio 98.6 1.9E-05 4E-10 81.3 24.0 133 94-235 84-216 (694)
132 TIGR02552 LcrH_SycD type III s 98.6 3E-06 6.5E-11 69.0 14.2 99 451-551 16-114 (135)
133 KOG3060 Uncharacterized conser 98.5 0.00014 3E-09 62.3 23.5 187 257-447 27-221 (289)
134 COG4783 Putative Zn-dependent 98.5 0.0001 2.3E-09 69.3 22.7 142 389-551 313-454 (484)
135 TIGR02552 LcrH_SycD type III s 98.4 1.4E-05 2.9E-10 65.1 14.7 111 404-517 5-115 (135)
136 PF12854 PPR_1: PPR repeat 98.4 5.3E-07 1.1E-11 52.0 4.1 32 482-513 2-33 (34)
137 COG4783 Putative Zn-dependent 98.4 0.00027 5.8E-09 66.6 23.4 146 350-516 309-454 (484)
138 KOG0550 Molecular chaperone (D 98.3 0.00044 9.5E-09 63.6 22.5 274 36-341 54-350 (486)
139 PF12854 PPR_1: PPR repeat 98.3 9.8E-07 2.1E-11 50.9 3.9 34 516-549 1-34 (34)
140 PF09976 TPR_21: Tetratricopep 98.3 5.3E-05 1.1E-09 62.2 15.6 127 97-233 13-144 (145)
141 PF09976 TPR_21: Tetratricopep 98.3 3.9E-05 8.4E-10 63.0 14.8 117 429-548 23-144 (145)
142 KOG2041 WD40 repeat protein [G 98.2 0.0053 1.2E-07 60.5 28.7 61 453-513 1022-1083(1189)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.4E-05 2E-09 70.3 15.7 125 99-235 172-296 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00013 2.9E-09 69.3 16.7 126 349-480 171-296 (395)
145 KOG0550 Molecular chaperone (D 98.1 0.0022 4.9E-08 59.1 23.0 90 356-446 258-350 (486)
146 PRK15363 pathogenicity island 98.0 0.00028 6.1E-09 56.7 13.8 95 454-551 37-132 (157)
147 KOG0553 TPR repeat-containing 98.0 5.6E-05 1.2E-09 66.6 10.5 98 425-527 89-187 (304)
148 COG4235 Cytochrome c biogenesi 98.0 0.00047 1E-08 61.3 16.2 100 95-196 155-257 (287)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00025 5.4E-09 56.0 13.4 100 97-196 3-106 (119)
150 PF07079 DUF1347: Protein of u 98.0 0.015 3.3E-07 54.6 45.1 128 427-562 389-530 (549)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00027 5.9E-09 55.8 13.3 95 455-551 5-105 (119)
152 PF12895 Apc3: Anaphase-promot 98.0 1.1E-05 2.4E-10 59.0 4.7 81 465-547 2-83 (84)
153 PRK10866 outer membrane biogen 98.0 0.0011 2.3E-08 59.5 18.1 179 37-268 38-238 (243)
154 PRK15363 pathogenicity island 98.0 0.00046 1E-08 55.5 13.9 101 94-196 33-133 (157)
155 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.8E-09 54.1 11.0 93 455-550 3-96 (100)
156 CHL00033 ycf3 photosystem I as 97.9 0.00021 4.6E-09 60.5 12.2 121 452-573 35-167 (168)
157 KOG2041 WD40 repeat protein [G 97.9 0.029 6.3E-07 55.6 28.9 205 128-373 689-904 (1189)
158 KOG0553 TPR repeat-containing 97.9 0.00042 9.2E-09 61.2 13.6 153 389-550 88-244 (304)
159 COG4700 Uncharacterized protei 97.9 0.0056 1.2E-07 50.1 18.6 128 129-263 87-214 (251)
160 PRK10866 outer membrane biogen 97.9 0.0042 9E-08 55.8 20.2 66 95-161 31-99 (243)
161 PLN03088 SGT1, suppressor of 97.9 0.00036 7.7E-09 66.8 14.3 90 424-516 9-99 (356)
162 COG4700 Uncharacterized protei 97.9 0.0037 8E-08 51.1 17.4 137 89-233 82-219 (251)
163 PRK02603 photosystem I assembl 97.9 0.00076 1.7E-08 57.3 14.7 83 420-504 38-123 (172)
164 PF12895 Apc3: Anaphase-promot 97.9 5E-05 1.1E-09 55.5 6.3 47 145-191 3-50 (84)
165 cd00189 TPR Tetratricopeptide 97.8 0.00032 6.9E-09 52.7 11.1 97 98-196 2-98 (100)
166 PLN03088 SGT1, suppressor of 97.8 0.00068 1.5E-08 64.9 15.4 94 101-196 7-100 (356)
167 PF10037 MRP-S27: Mitochondria 97.8 0.00038 8.1E-09 66.6 12.9 120 379-498 63-184 (429)
168 COG4235 Cytochrome c biogenesi 97.8 0.0014 2.9E-08 58.5 14.9 102 449-552 153-257 (287)
169 TIGR00756 PPR pentatricopeptid 97.8 5.4E-05 1.2E-09 44.3 4.4 33 489-521 2-34 (35)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.038 8.3E-07 51.9 38.8 129 418-550 398-530 (660)
171 PRK10153 DNA-binding transcrip 97.8 0.0025 5.4E-08 63.8 18.4 142 414-560 334-489 (517)
172 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.9E-08 60.5 15.3 129 133-270 3-135 (280)
173 COG3898 Uncharacterized membra 97.7 0.036 7.8E-07 51.1 29.8 254 288-555 131-396 (531)
174 TIGR00756 PPR pentatricopeptid 97.7 6.8E-05 1.5E-09 43.9 4.4 33 524-556 2-34 (35)
175 PRK02603 photosystem I assembl 97.7 0.0022 4.8E-08 54.4 15.4 91 131-228 35-127 (172)
176 CHL00033 ycf3 photosystem I as 97.7 0.0012 2.5E-08 55.9 13.6 114 112-232 15-138 (168)
177 KOG1130 Predicted G-alpha GTPa 97.7 0.00042 9.2E-09 63.6 11.0 285 250-550 25-343 (639)
178 PF13812 PPR_3: Pentatricopept 97.7 8.4E-05 1.8E-09 43.1 4.4 32 489-520 3-34 (34)
179 PRK10153 DNA-binding transcrip 97.7 0.0056 1.2E-07 61.4 19.8 62 207-270 420-481 (517)
180 PF13812 PPR_3: Pentatricopept 97.7 8.4E-05 1.8E-09 43.1 4.4 33 523-555 2-34 (34)
181 PF13414 TPR_11: TPR repeat; P 97.7 0.00019 4.2E-09 50.1 6.9 64 486-550 2-66 (69)
182 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.4E-08 60.1 14.7 130 384-516 3-136 (280)
183 PF14938 SNAP: Soluble NSF att 97.7 0.0064 1.4E-07 56.3 18.6 90 251-340 123-224 (282)
184 PF12688 TPR_5: Tetratrico pep 97.7 0.0029 6.4E-08 49.1 13.5 56 460-515 9-66 (120)
185 PF14938 SNAP: Soluble NSF att 97.6 0.0027 5.9E-08 58.8 15.9 137 97-235 36-183 (282)
186 PF14559 TPR_19: Tetratricopep 97.6 0.00013 2.9E-09 50.7 5.5 52 108-160 3-54 (68)
187 PF12688 TPR_5: Tetratrico pep 97.6 0.0043 9.3E-08 48.2 14.0 20 106-125 11-30 (120)
188 PF13432 TPR_16: Tetratricopep 97.6 0.00025 5.3E-09 48.8 6.4 57 493-550 3-59 (65)
189 PF13525 YfiO: Outer membrane 97.6 0.0084 1.8E-07 52.4 17.4 64 97-160 6-71 (203)
190 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.7E-08 63.1 13.0 124 412-535 61-186 (429)
191 KOG1130 Predicted G-alpha GTPa 97.6 0.0017 3.6E-08 59.8 13.0 288 215-515 25-343 (639)
192 KOG2114 Vacuolar assembly/sort 97.6 0.075 1.6E-06 54.1 25.1 180 97-303 335-516 (933)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00057 1.2E-08 47.5 7.4 59 429-490 3-61 (68)
194 KOG1258 mRNA processing protei 97.5 0.12 2.5E-06 50.9 34.6 183 383-571 298-489 (577)
195 PF13525 YfiO: Outer membrane 97.5 0.032 6.8E-07 48.8 19.4 63 170-236 9-71 (203)
196 PF13414 TPR_11: TPR repeat; P 97.5 0.00055 1.2E-08 47.7 6.9 65 95-160 2-67 (69)
197 PF13432 TPR_16: Tetratricopep 97.5 0.00069 1.5E-08 46.5 7.0 58 102-160 3-60 (65)
198 PF08579 RPM2: Mitochondrial r 97.4 0.0032 7E-08 46.9 10.5 69 254-322 37-114 (120)
199 PF08579 RPM2: Mitochondrial r 97.4 0.0036 7.8E-08 46.7 10.5 79 211-289 29-116 (120)
200 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.12 2.6E-06 48.8 33.8 119 452-574 397-519 (660)
201 COG3898 Uncharacterized membra 97.4 0.11 2.3E-06 48.2 31.7 286 144-450 97-396 (531)
202 KOG2796 Uncharacterized conser 97.4 0.079 1.7E-06 46.2 22.4 130 386-516 181-315 (366)
203 PRK10803 tol-pal system protei 97.3 0.0065 1.4E-07 55.0 13.3 94 455-550 146-245 (263)
204 PF01535 PPR: PPR repeat; Int 97.3 0.00039 8.5E-09 39.2 3.5 29 489-517 2-30 (31)
205 KOG1538 Uncharacterized conser 97.3 0.04 8.7E-07 54.2 18.5 53 314-375 749-801 (1081)
206 KOG1258 mRNA processing protei 97.3 0.23 5E-06 49.0 35.9 400 111-536 60-489 (577)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0021 4.5E-08 45.3 7.8 56 495-551 3-58 (73)
208 PF03704 BTAD: Bacterial trans 97.3 0.0034 7.4E-08 51.6 10.2 75 489-564 64-143 (146)
209 PRK10803 tol-pal system protei 97.2 0.0071 1.5E-07 54.7 12.6 100 97-196 144-247 (263)
210 PF01535 PPR: PPR repeat; Int 97.2 0.00054 1.2E-08 38.6 3.4 30 524-553 2-31 (31)
211 PF06239 ECSIT: Evolutionarily 97.1 0.0065 1.4E-07 51.5 10.5 105 449-572 44-153 (228)
212 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.1E-06 46.4 27.9 107 353-479 183-289 (319)
213 KOG2796 Uncharacterized conser 97.1 0.17 3.7E-06 44.3 23.1 141 350-493 180-325 (366)
214 COG4105 ComL DNA uptake lipopr 97.1 0.17 3.6E-06 44.5 18.9 77 38-142 41-117 (254)
215 PF13281 DUF4071: Domain of un 97.1 0.25 5.4E-06 46.8 21.4 30 522-551 305-334 (374)
216 PF06239 ECSIT: Evolutionarily 97.1 0.014 3.1E-07 49.5 11.8 123 402-548 34-161 (228)
217 PF07079 DUF1347: Protein of u 97.0 0.31 6.6E-06 46.3 41.4 448 105-582 15-520 (549)
218 PF03704 BTAD: Bacterial trans 97.0 0.022 4.7E-07 46.8 12.8 69 169-244 65-138 (146)
219 PRK15331 chaperone protein Sic 97.0 0.012 2.6E-07 47.7 10.2 104 90-195 30-134 (165)
220 PF13371 TPR_9: Tetratricopept 96.9 0.0063 1.4E-07 42.8 7.8 56 104-160 3-58 (73)
221 PRK15331 chaperone protein Sic 96.9 0.068 1.5E-06 43.5 14.2 87 392-480 47-133 (165)
222 PF13424 TPR_12: Tetratricopep 96.9 0.0023 4.9E-08 45.9 4.9 68 167-235 6-74 (78)
223 COG3118 Thioredoxin domain-con 96.8 0.28 6.1E-06 44.0 18.3 146 426-574 143-289 (304)
224 PF13281 DUF4071: Domain of un 96.8 0.47 1E-05 45.0 21.5 82 207-288 141-228 (374)
225 PF13424 TPR_12: Tetratricopep 96.8 0.0037 8E-08 44.8 5.8 63 488-550 6-74 (78)
226 KOG1538 Uncharacterized conser 96.8 0.33 7.2E-06 48.1 20.0 89 244-337 558-657 (1081)
227 PRK11906 transcriptional regul 96.8 0.1 2.3E-06 50.0 16.4 113 431-549 318-434 (458)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.022 4.8E-07 54.4 10.9 66 414-480 72-140 (453)
229 KOG1585 Protein required for f 96.6 0.33 7.2E-06 42.0 16.6 86 133-234 33-118 (308)
230 KOG2114 Vacuolar assembly/sort 96.6 1.1 2.4E-05 46.2 23.0 148 97-268 369-516 (933)
231 KOG1585 Protein required for f 96.6 0.35 7.6E-06 41.9 16.2 210 96-335 31-250 (308)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.032 7E-07 53.3 11.3 99 449-553 72-176 (453)
233 PRK11906 transcriptional regul 96.5 0.12 2.7E-06 49.6 15.0 115 110-232 318-432 (458)
234 COG3118 Thioredoxin domain-con 96.5 0.15 3.3E-06 45.6 14.3 31 165-195 235-265 (304)
235 PF04840 Vps16_C: Vps16, C-ter 96.5 0.77 1.7E-05 43.0 30.0 109 384-512 179-287 (319)
236 PF10300 DUF3808: Protein of u 96.5 0.11 2.5E-06 51.8 15.4 167 170-339 192-374 (468)
237 KOG0543 FKBP-type peptidyl-pro 96.5 0.054 1.2E-06 50.6 12.0 125 103-235 215-354 (397)
238 KOG0543 FKBP-type peptidyl-pro 96.4 0.069 1.5E-06 49.9 12.4 124 425-550 216-354 (397)
239 PF10300 DUF3808: Protein of u 96.4 0.38 8.2E-06 48.1 18.3 117 430-549 246-374 (468)
240 COG1729 Uncharacterized protei 96.2 0.06 1.3E-06 47.7 10.5 96 37-160 147-244 (262)
241 PF08631 SPO22: Meiosis protei 96.2 1 2.2E-05 41.6 25.1 123 107-236 4-150 (278)
242 KOG2280 Vacuolar assembly/sort 96.2 1.8 3.9E-05 44.2 32.1 105 421-544 688-792 (829)
243 KOG2610 Uncharacterized conser 96.2 0.17 3.6E-06 45.9 12.9 157 141-303 113-273 (491)
244 KOG2610 Uncharacterized conser 96.1 0.18 4E-06 45.7 13.0 115 325-442 116-234 (491)
245 PF13512 TPR_18: Tetratricopep 96.1 0.24 5.3E-06 39.4 12.3 84 95-178 9-94 (142)
246 PF12921 ATP13: Mitochondrial 96.0 0.28 6E-06 38.7 12.2 97 417-533 2-99 (126)
247 PF12921 ATP13: Mitochondrial 95.9 0.17 3.6E-06 39.9 10.8 87 167-253 3-99 (126)
248 PF13428 TPR_14: Tetratricopep 95.9 0.028 6.2E-07 34.6 5.3 40 97-137 2-41 (44)
249 COG4105 ComL DNA uptake lipopr 95.9 1.1 2.4E-05 39.6 21.1 77 101-177 39-117 (254)
250 PF04053 Coatomer_WDAD: Coatom 95.7 0.42 9.1E-06 47.1 15.0 155 107-301 272-426 (443)
251 PF13428 TPR_14: Tetratricopep 95.7 0.036 7.7E-07 34.2 5.0 27 490-516 4-30 (44)
252 PF04053 Coatomer_WDAD: Coatom 95.7 0.74 1.6E-05 45.4 16.4 156 357-548 271-428 (443)
253 KOG4555 TPR repeat-containing 95.7 0.22 4.7E-06 38.4 9.8 89 463-552 54-145 (175)
254 COG4649 Uncharacterized protei 95.7 0.96 2.1E-05 37.1 13.8 52 219-270 144-195 (221)
255 COG0457 NrfG FOG: TPR repeat [ 95.6 1.6 3.5E-05 38.9 29.5 200 313-516 60-265 (291)
256 KOG1941 Acetylcholine receptor 95.5 0.43 9.2E-06 43.9 12.9 228 217-444 16-273 (518)
257 PF04184 ST7: ST7 protein; In 95.5 1.7 3.7E-05 42.3 17.4 64 417-480 259-323 (539)
258 KOG1941 Acetylcholine receptor 95.5 0.36 7.9E-06 44.4 12.4 229 252-480 16-274 (518)
259 COG1729 Uncharacterized protei 95.4 0.34 7.3E-06 43.1 11.8 90 143-236 153-244 (262)
260 COG4649 Uncharacterized protei 95.4 1.2 2.6E-05 36.5 14.2 137 94-237 57-197 (221)
261 PF09613 HrpB1_HrpK: Bacterial 95.4 1 2.2E-05 36.8 13.4 104 463-572 21-125 (160)
262 PF13512 TPR_18: Tetratricopep 95.3 0.93 2E-05 36.2 12.7 75 318-392 16-92 (142)
263 KOG2280 Vacuolar assembly/sort 95.3 4 8.8E-05 41.8 35.7 108 453-579 685-792 (829)
264 COG0457 NrfG FOG: TPR repeat [ 95.3 2 4.4E-05 38.2 29.8 223 325-551 36-265 (291)
265 COG4785 NlpI Lipoprotein NlpI, 95.2 1.7 3.8E-05 37.1 15.3 85 110-196 79-163 (297)
266 PF04184 ST7: ST7 protein; In 95.2 0.57 1.2E-05 45.4 13.2 66 131-196 259-325 (539)
267 smart00299 CLH Clathrin heavy 95.2 1.4 3E-05 35.8 15.6 123 423-568 13-136 (140)
268 COG3629 DnrI DNA-binding trans 95.1 0.3 6.5E-06 44.1 10.7 77 489-566 155-236 (280)
269 KOG4555 TPR repeat-containing 95.0 0.51 1.1E-05 36.5 9.8 91 426-517 52-145 (175)
270 PF08631 SPO22: Meiosis protei 94.9 3.2 6.9E-05 38.4 23.7 169 42-242 4-192 (278)
271 KOG1920 IkappaB kinase complex 94.7 7.9 0.00017 42.1 24.7 134 388-549 914-1053(1265)
272 smart00299 CLH Clathrin heavy 94.7 1.9 4.2E-05 34.9 15.9 126 100-254 11-137 (140)
273 COG4785 NlpI Lipoprotein NlpI, 94.6 2.6 5.6E-05 36.1 16.4 163 92-271 94-266 (297)
274 PF13431 TPR_17: Tetratricopep 94.5 0.072 1.6E-06 30.5 3.5 30 54-85 2-31 (34)
275 COG3629 DnrI DNA-binding trans 94.5 0.51 1.1E-05 42.7 10.5 78 97-175 154-236 (280)
276 PRK09687 putative lyase; Provi 94.4 4.2 9.2E-05 37.5 28.1 203 346-569 67-279 (280)
277 PRK15180 Vi polysaccharide bio 94.3 5.3 0.00012 38.6 29.0 90 105-196 332-421 (831)
278 KOG3941 Intermediate in Toll s 94.0 0.6 1.3E-05 41.5 9.5 106 450-574 65-175 (406)
279 KOG1920 IkappaB kinase complex 93.7 13 0.00027 40.7 27.0 125 101-235 682-820 (1265)
280 PF13431 TPR_17: Tetratricopep 93.7 0.094 2E-06 30.0 2.9 32 510-542 2-33 (34)
281 PF10602 RPN7: 26S proteasome 93.5 1.8 3.9E-05 36.7 11.6 100 96-195 36-142 (177)
282 PF10602 RPN7: 26S proteasome 93.3 1.2 2.5E-05 37.8 10.1 97 453-549 37-140 (177)
283 PF13176 TPR_7: Tetratricopept 93.1 0.23 4.9E-06 28.9 4.1 26 524-549 1-26 (36)
284 KOG4648 Uncharacterized conser 93.1 0.33 7.1E-06 44.2 6.7 86 462-550 107-193 (536)
285 PF09205 DUF1955: Domain of un 93.0 3.5 7.5E-05 32.2 14.9 25 419-443 122-146 (161)
286 PF13176 TPR_7: Tetratricopept 93.0 0.24 5.2E-06 28.8 4.0 27 489-515 1-27 (36)
287 KOG1550 Extracellular protein 92.7 14 0.00029 38.3 27.9 177 112-308 228-428 (552)
288 PF00515 TPR_1: Tetratricopept 92.5 0.34 7.3E-06 27.6 4.2 27 524-550 3-29 (34)
289 PF13170 DUF4003: Protein of u 92.4 9.2 0.0002 35.6 18.0 129 259-389 79-224 (297)
290 KOG1550 Extracellular protein 92.4 15 0.00032 38.0 28.5 176 223-412 228-427 (552)
291 PF06552 TOM20_plant: Plant sp 92.2 2.8 6.1E-05 34.9 10.3 25 504-530 97-121 (186)
292 PF07719 TPR_2: Tetratricopept 92.2 0.38 8.2E-06 27.3 4.2 27 524-550 3-29 (34)
293 KOG2396 HAT (Half-A-TPR) repea 92.0 13 0.00028 36.4 37.7 80 92-173 101-181 (568)
294 PF09205 DUF1955: Domain of un 91.9 5 0.00011 31.4 15.7 65 488-553 87-151 (161)
295 KOG3941 Intermediate in Toll s 91.8 1.9 4.1E-05 38.5 9.5 35 148-182 140-174 (406)
296 KOG4234 TPR repeat-containing 91.7 2.4 5.2E-05 35.8 9.5 55 495-550 142-196 (271)
297 COG3947 Response regulator con 91.7 9.9 0.00021 34.4 16.3 72 489-561 281-357 (361)
298 KOG4234 TPR repeat-containing 91.2 5.3 0.00012 33.8 10.9 94 102-196 101-198 (271)
299 PF07719 TPR_2: Tetratricopept 90.6 0.7 1.5E-05 26.1 4.2 28 98-125 3-30 (34)
300 COG1747 Uncharacterized N-term 90.4 19 0.00042 35.4 23.5 217 43-286 26-248 (711)
301 PF13170 DUF4003: Protein of u 90.4 15 0.00033 34.1 20.9 135 223-359 78-229 (297)
302 PF00515 TPR_1: Tetratricopept 90.3 0.78 1.7E-05 26.0 4.2 29 97-125 2-30 (34)
303 PF08424 NRDE-2: NRDE-2, neces 90.3 17 0.00036 34.5 15.8 121 52-193 6-129 (321)
304 TIGR02561 HrpB1_HrpK type III 90.2 7.8 0.00017 31.2 10.7 50 430-480 23-72 (153)
305 KOG2471 TPR repeat-containing 90.2 20 0.00043 35.1 17.3 111 460-571 248-383 (696)
306 PF07035 Mic1: Colon cancer-as 90.1 10 0.00022 31.6 15.1 35 154-188 17-51 (167)
307 PRK11619 lytic murein transgly 89.9 28 0.00062 36.6 38.0 135 39-182 41-179 (644)
308 PF07575 Nucleopor_Nup85: Nup8 89.6 28 0.00062 36.2 18.4 25 131-156 149-173 (566)
309 PF09613 HrpB1_HrpK: Bacterial 89.5 11 0.00023 31.0 13.9 53 428-481 21-73 (160)
310 PF02259 FAT: FAT domain; Int 89.2 22 0.00047 34.3 24.0 53 249-305 5-57 (352)
311 PF02284 COX5A: Cytochrome c o 89.2 6.9 0.00015 29.0 8.9 47 470-516 28-74 (108)
312 PF02284 COX5A: Cytochrome c o 89.0 7.1 0.00015 29.0 8.8 62 505-567 28-89 (108)
313 COG2976 Uncharacterized protei 88.9 13 0.00029 31.5 14.6 89 459-552 96-189 (207)
314 PF00637 Clathrin: Region in C 88.8 0.016 3.5E-07 47.4 -5.3 83 423-512 13-95 (143)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 3.4 7.4E-05 30.2 7.0 47 470-516 25-71 (103)
316 PF04097 Nic96: Nup93/Nic96; 88.7 34 0.00075 35.9 17.4 48 95-144 111-158 (613)
317 KOG2396 HAT (Half-A-TPR) repea 88.6 26 0.00057 34.5 39.2 82 113-196 88-170 (568)
318 PRK09687 putative lyase; Provi 88.6 20 0.00044 33.1 27.8 232 94-356 35-276 (280)
319 PF02259 FAT: FAT domain; Int 88.5 24 0.00053 33.9 21.6 54 283-340 4-57 (352)
320 PF11207 DUF2989: Protein of u 88.4 8.4 0.00018 32.9 10.4 73 469-542 123-198 (203)
321 KOG2471 TPR repeat-containing 88.4 17 0.00038 35.5 13.4 37 426-463 344-380 (696)
322 KOG0890 Protein kinase of the 88.3 65 0.0014 38.6 31.4 152 101-266 1388-1542(2382)
323 COG2976 Uncharacterized protei 88.3 15 0.00032 31.2 14.6 92 174-271 97-188 (207)
324 KOG1464 COP9 signalosome, subu 88.3 18 0.0004 32.3 17.4 206 272-477 21-256 (440)
325 PF06552 TOM20_plant: Plant sp 88.2 3.8 8.2E-05 34.2 8.0 67 504-574 52-130 (186)
326 PF13374 TPR_10: Tetratricopep 87.2 1.6 3.5E-05 26.0 4.4 28 523-550 3-30 (42)
327 PF11207 DUF2989: Protein of u 87.2 9.8 0.00021 32.6 10.0 82 142-227 117-198 (203)
328 KOG4642 Chaperone-dependent E3 87.0 5.9 0.00013 34.6 8.7 120 427-549 20-144 (284)
329 PF10345 Cohesin_load: Cohesin 87.0 44 0.00095 35.2 41.7 435 128-574 27-594 (608)
330 PF13374 TPR_10: Tetratricopep 86.9 1.7 3.6E-05 26.0 4.3 28 488-515 3-30 (42)
331 KOG4648 Uncharacterized conser 86.7 4.7 0.0001 37.1 8.4 90 249-341 104-194 (536)
332 KOG4642 Chaperone-dependent E3 86.6 12 0.00025 32.9 10.3 100 39-140 18-126 (284)
333 PRK15180 Vi polysaccharide bio 86.6 34 0.00073 33.5 15.6 125 174-307 297-421 (831)
334 KOG1586 Protein required for f 86.5 22 0.00047 31.2 19.4 30 210-239 157-186 (288)
335 KOG2300 Uncharacterized conser 86.4 35 0.00076 33.5 40.4 433 138-572 14-540 (629)
336 KOG2066 Vacuolar assembly/sort 86.1 48 0.001 34.8 28.9 102 103-219 363-467 (846)
337 KOG0276 Vesicle coat complex C 85.9 31 0.00067 34.9 13.9 150 108-303 598-747 (794)
338 KOG0276 Vesicle coat complex C 85.7 31 0.00067 34.9 13.8 150 359-548 598-747 (794)
339 smart00386 HAT HAT (Half-A-TPR 85.6 2.1 4.5E-05 23.7 4.0 29 45-75 1-29 (33)
340 KOG4521 Nuclear pore complex, 85.3 49 0.0011 36.5 15.8 182 33-229 922-1124(1480)
341 PF07035 Mic1: Colon cancer-as 85.2 21 0.00045 29.8 15.6 133 117-269 15-147 (167)
342 COG4455 ImpE Protein of avirul 84.8 7.5 0.00016 33.5 8.1 75 455-531 4-81 (273)
343 COG4455 ImpE Protein of avirul 84.6 7.4 0.00016 33.5 8.0 53 425-478 9-61 (273)
344 KOG2066 Vacuolar assembly/sort 84.2 59 0.0013 34.1 26.2 151 213-375 362-533 (846)
345 COG1747 Uncharacterized N-term 84.1 47 0.001 33.0 24.9 60 132-194 67-126 (711)
346 PF13181 TPR_8: Tetratricopept 84.0 3.2 7E-05 23.3 4.3 27 524-550 3-29 (34)
347 PF04097 Nic96: Nup93/Nic96; 84.0 60 0.0013 34.1 20.2 47 131-179 112-158 (613)
348 PF13181 TPR_8: Tetratricopept 83.8 3.2 6.9E-05 23.3 4.3 29 488-516 2-30 (34)
349 COG2909 MalT ATP-dependent tra 83.5 68 0.0015 34.3 27.3 93 141-235 425-525 (894)
350 TIGR02561 HrpB1_HrpK type III 83.4 22 0.00049 28.7 12.8 52 464-517 22-74 (153)
351 KOG4570 Uncharacterized conser 83.0 26 0.00056 32.2 11.1 49 362-410 115-163 (418)
352 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 16 0.00036 26.8 9.9 65 502-567 22-86 (103)
353 PF07721 TPR_4: Tetratricopept 82.7 2 4.3E-05 22.6 2.8 21 100-120 5-25 (26)
354 PF13174 TPR_6: Tetratricopept 82.5 2.6 5.7E-05 23.4 3.5 27 525-551 3-29 (33)
355 PF08424 NRDE-2: NRDE-2, neces 82.3 46 0.001 31.6 17.9 120 434-556 48-189 (321)
356 PF13174 TPR_6: Tetratricopept 82.1 2.1 4.4E-05 23.9 2.9 24 102-125 6-29 (33)
357 TIGR03504 FimV_Cterm FimV C-te 80.9 4 8.7E-05 25.0 3.9 23 528-550 5-27 (44)
358 COG2909 MalT ATP-dependent tra 80.4 88 0.0019 33.6 32.8 223 217-442 425-684 (894)
359 COG3947 Response regulator con 80.1 33 0.00071 31.3 10.6 60 169-235 282-341 (361)
360 PF10345 Cohesin_load: Cohesin 80.0 84 0.0018 33.1 41.2 443 95-550 29-605 (608)
361 KOG4570 Uncharacterized conser 78.2 16 0.00034 33.6 8.2 109 86-196 54-165 (418)
362 KOG4077 Cytochrome c oxidase, 77.9 20 0.00043 27.9 7.5 47 470-516 67-113 (149)
363 KOG0376 Serine-threonine phosp 77.8 3.6 7.7E-05 39.9 4.5 105 463-572 15-120 (476)
364 PF09986 DUF2225: Uncharacteri 77.6 49 0.0011 29.1 11.2 64 489-552 120-195 (214)
365 PF14853 Fis1_TPR_C: Fis1 C-te 77.6 14 0.00031 23.7 5.9 23 528-550 7-29 (53)
366 COG0790 FOG: TPR repeat, SEL1 77.2 63 0.0014 30.1 24.6 83 222-307 128-221 (292)
367 TIGR03504 FimV_Cterm FimV C-te 76.9 6.2 0.00013 24.2 3.9 24 213-236 5-28 (44)
368 KOG4507 Uncharacterized conser 76.4 8.6 0.00019 38.4 6.6 101 427-529 617-717 (886)
369 PRK10941 hypothetical protein; 76.0 48 0.001 30.4 11.0 79 491-570 185-264 (269)
370 PF07163 Pex26: Pex26 protein; 75.7 45 0.00098 30.2 10.3 87 249-335 90-181 (309)
371 PF07163 Pex26: Pex26 protein; 75.7 63 0.0014 29.4 13.9 89 282-370 88-181 (309)
372 KOG0128 RNA-binding protein SA 75.7 1.2E+02 0.0025 32.4 35.0 371 130-521 112-531 (881)
373 KOG4507 Uncharacterized conser 75.5 23 0.0005 35.5 9.2 105 106-218 617-721 (886)
374 KOG1308 Hsp70-interacting prot 75.0 4 8.7E-05 37.7 3.9 117 428-549 125-242 (377)
375 KOG4077 Cytochrome c oxidase, 74.6 23 0.00049 27.6 7.0 60 506-566 68-127 (149)
376 PF04190 DUF410: Protein of un 73.7 72 0.0016 29.1 18.3 107 108-230 2-113 (260)
377 PRK11619 lytic murein transgly 71.9 1.4E+02 0.003 31.6 40.7 78 293-373 295-372 (644)
378 PF13929 mRNA_stabil: mRNA sta 71.5 84 0.0018 28.9 13.6 62 274-335 199-261 (292)
379 PF13929 mRNA_stabil: mRNA sta 70.7 87 0.0019 28.8 13.4 62 344-405 199-261 (292)
380 PF00244 14-3-3: 14-3-3 protei 70.3 65 0.0014 28.9 10.4 40 318-357 7-46 (236)
381 smart00028 TPR Tetratricopepti 70.2 8.9 0.00019 20.3 3.5 26 99-124 4-29 (34)
382 KOG1308 Hsp70-interacting prot 69.9 4.2 9E-05 37.6 2.8 107 463-574 125-232 (377)
383 KOG1464 COP9 signalosome, subu 69.6 86 0.0019 28.3 24.7 189 179-370 40-254 (440)
384 KOG0128 RNA-binding protein SA 69.3 1.6E+02 0.0036 31.4 34.8 377 95-485 112-530 (881)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 69.2 55 0.0012 25.8 9.8 44 505-548 81-125 (126)
386 COG0790 FOG: TPR repeat, SEL1 68.8 1E+02 0.0022 28.7 25.0 150 178-342 53-221 (292)
387 PRK10941 hypothetical protein; 68.2 79 0.0017 29.0 10.6 57 423-480 187-243 (269)
388 PF00637 Clathrin: Region in C 68.0 2.4 5.3E-05 34.4 1.0 84 102-192 13-96 (143)
389 PF10579 Rapsyn_N: Rapsyn N-te 66.7 8.8 0.00019 27.0 3.2 46 499-544 18-65 (80)
390 PF10579 Rapsyn_N: Rapsyn N-te 66.0 24 0.00052 24.9 5.2 46 464-509 18-65 (80)
391 PF12862 Apc5: Anaphase-promot 64.8 45 0.00097 24.6 7.1 53 498-550 9-69 (94)
392 PF14689 SPOB_a: Sensor_kinase 64.1 21 0.00045 23.9 4.6 29 521-549 22-50 (62)
393 PF07575 Nucleopor_Nup85: Nup8 62.1 2.1E+02 0.0045 29.9 21.5 76 402-479 390-465 (566)
394 KOG3364 Membrane protein invol 61.0 84 0.0018 25.1 9.2 65 485-550 30-99 (149)
395 PRK12798 chemotaxis protein; R 60.5 1.7E+02 0.0037 28.5 21.3 84 290-375 125-213 (421)
396 cd08819 CARD_MDA5_2 Caspase ac 59.6 65 0.0014 23.3 6.8 65 150-226 21-85 (88)
397 KOG0376 Serine-threonine phosp 59.3 21 0.00046 34.9 5.4 104 389-497 11-115 (476)
398 KOG1586 Protein required for f 58.6 1.3E+02 0.0029 26.6 19.4 20 252-271 164-183 (288)
399 PF11817 Foie-gras_1: Foie gra 58.2 52 0.0011 29.8 7.7 61 208-268 179-244 (247)
400 PF02184 HAT: HAT (Half-A-TPR) 58.2 16 0.00035 20.5 2.6 23 46-71 2-24 (32)
401 KOG0551 Hsp90 co-chaperone CNS 57.5 1.1E+02 0.0024 28.6 9.3 91 458-549 87-180 (390)
402 PF11846 DUF3366: Domain of un 57.5 57 0.0012 28.1 7.6 32 519-550 141-172 (193)
403 PF12862 Apc5: Anaphase-promot 57.2 76 0.0016 23.4 7.3 24 492-515 46-69 (94)
404 PF14853 Fis1_TPR_C: Fis1 C-te 57.2 50 0.0011 21.3 5.9 31 491-523 5-35 (53)
405 PF09670 Cas_Cas02710: CRISPR- 57.0 2E+02 0.0043 28.1 13.0 57 354-411 138-198 (379)
406 PF14689 SPOB_a: Sensor_kinase 56.6 31 0.00066 23.1 4.4 30 165-194 22-51 (62)
407 KOG4521 Nuclear pore complex, 56.4 3.4E+02 0.0073 30.6 14.7 159 99-266 923-1126(1480)
408 KOG0686 COP9 signalosome, subu 55.9 2E+02 0.0044 27.9 14.7 62 97-158 151-214 (466)
409 KOG3807 Predicted membrane pro 55.8 1.8E+02 0.0039 27.2 14.1 58 246-305 279-339 (556)
410 KOG0686 COP9 signalosome, subu 55.7 2E+02 0.0044 27.9 15.3 43 450-494 304-351 (466)
411 PF09670 Cas_Cas02710: CRISPR- 55.3 1.8E+02 0.0038 28.5 11.2 57 214-271 138-198 (379)
412 COG5159 RPN6 26S proteasome re 55.1 1.7E+02 0.0037 26.8 22.0 30 248-277 9-38 (421)
413 PF11848 DUF3368: Domain of un 53.9 53 0.0011 20.6 5.2 33 533-565 13-45 (48)
414 KOG2908 26S proteasome regulat 53.3 1.8E+02 0.004 27.4 9.9 58 423-480 81-143 (380)
415 PF04762 IKI3: IKI3 family; I 51.6 2.1E+02 0.0046 31.9 12.2 216 94-337 693-926 (928)
416 PF04910 Tcf25: Transcriptiona 50.9 2.4E+02 0.0052 27.3 20.5 124 204-340 37-167 (360)
417 COG0735 Fur Fe2+/Zn2+ uptake r 50.8 1.2E+02 0.0027 24.6 8.0 63 511-574 10-72 (145)
418 KOG2422 Uncharacterized conser 50.1 3E+02 0.0065 28.2 18.5 157 220-376 251-448 (665)
419 KOG0292 Vesicle coat complex C 49.7 3.8E+02 0.0082 29.2 20.4 56 502-557 1062-1119(1202)
420 cd00280 TRFH Telomeric Repeat 49.7 1.3E+02 0.0028 25.6 7.6 22 459-480 118-139 (200)
421 PF10255 Paf67: RNA polymerase 49.6 1.2E+02 0.0025 29.8 8.7 102 414-515 72-192 (404)
422 KOG1839 Uncharacterized protei 49.4 2.6E+02 0.0057 31.8 12.0 163 102-264 938-1121(1236)
423 PF09986 DUF2225: Uncharacteri 49.2 1.9E+02 0.004 25.5 11.1 26 281-306 169-194 (214)
424 KOG2063 Vacuolar assembly/sort 49.0 4E+02 0.0087 29.3 18.1 38 217-254 601-638 (877)
425 cd00280 TRFH Telomeric Repeat 48.3 1.5E+02 0.0033 25.1 7.9 23 423-445 117-139 (200)
426 PF11817 Foie-gras_1: Foie gra 48.1 99 0.0021 28.0 7.8 56 492-547 183-243 (247)
427 PF11846 DUF3366: Domain of un 47.6 73 0.0016 27.4 6.7 34 483-516 140-173 (193)
428 PRK13800 putative oxidoreducta 47.6 4.5E+02 0.0097 29.5 29.9 139 415-566 754-893 (897)
429 KOG0890 Protein kinase of the 46.7 6.6E+02 0.014 31.1 35.1 322 212-552 1388-1732(2382)
430 PF03745 DUF309: Domain of unk 46.5 62 0.0013 21.7 4.6 54 41-119 9-62 (62)
431 PF00244 14-3-3: 14-3-3 protei 46.2 2.2E+02 0.0048 25.5 11.2 36 249-284 8-43 (236)
432 COG5159 RPN6 26S proteasome re 45.9 2.4E+02 0.0053 25.9 21.5 52 212-263 8-66 (421)
433 PRK10564 maltose regulon perip 45.4 45 0.00097 30.7 5.0 42 485-526 254-296 (303)
434 KOG2062 26S proteasome regulat 45.0 4.1E+02 0.0089 28.3 34.0 27 210-236 213-239 (929)
435 PRK13800 putative oxidoreducta 44.8 5E+02 0.011 29.2 28.7 127 380-516 754-881 (897)
436 KOG1114 Tripeptidyl peptidase 44.7 4.7E+02 0.01 28.8 13.9 50 487-536 1231-1281(1304)
437 PF15297 CKAP2_C: Cytoskeleton 44.5 2.9E+02 0.0062 26.3 10.0 64 504-569 120-187 (353)
438 PF09477 Type_III_YscG: Bacter 44.1 1.4E+02 0.0031 22.7 8.3 86 434-527 23-108 (116)
439 COG4941 Predicted RNA polymera 43.8 2.9E+02 0.0063 26.2 16.5 177 42-236 207-394 (415)
440 COG5108 RPO41 Mitochondrial DN 43.7 1.8E+02 0.004 30.1 9.1 74 171-251 33-112 (1117)
441 COG0735 Fur Fe2+/Zn2+ uptake r 43.4 1.2E+02 0.0026 24.7 6.8 59 232-291 11-69 (145)
442 PF11848 DUF3368: Domain of un 42.9 83 0.0018 19.7 5.0 32 142-173 13-44 (48)
443 COG5108 RPO41 Mitochondrial DN 42.7 1.5E+02 0.0031 30.8 8.3 73 457-532 33-113 (1117)
444 COG5191 Uncharacterized conser 42.7 85 0.0018 29.0 6.2 80 92-173 103-183 (435)
445 KOG3364 Membrane protein invol 42.3 1.8E+02 0.0039 23.3 9.9 67 449-516 29-100 (149)
446 COG4259 Uncharacterized protei 41.3 1.5E+02 0.0032 22.1 6.3 52 507-560 57-108 (121)
447 TIGR02508 type_III_yscG type I 41.0 1.5E+02 0.0033 22.2 9.5 59 460-525 47-105 (115)
448 PF04190 DUF410: Protein of un 40.9 2.9E+02 0.0062 25.3 18.6 27 415-441 88-114 (260)
449 PF14561 TPR_20: Tetratricopep 40.6 1.4E+02 0.0031 21.8 9.7 32 165-196 21-52 (90)
450 KOG2908 26S proteasome regulat 40.2 3.3E+02 0.0072 25.8 10.1 64 459-522 82-155 (380)
451 PRK10564 maltose regulon perip 39.8 76 0.0016 29.3 5.5 44 519-562 253-297 (303)
452 PF11663 Toxin_YhaV: Toxin wit 39.2 29 0.00063 27.4 2.5 36 39-77 103-138 (140)
453 COG4941 Predicted RNA polymera 38.7 3.5E+02 0.0076 25.6 12.9 117 432-551 271-394 (415)
454 PF14561 TPR_20: Tetratricopep 38.5 1.6E+02 0.0034 21.6 9.9 54 128-181 19-73 (90)
455 PF01475 FUR: Ferric uptake re 38.1 94 0.002 24.2 5.4 48 527-574 12-59 (120)
456 PF10255 Paf67: RNA polymerase 37.7 2.6E+02 0.0055 27.5 9.0 100 381-480 74-192 (404)
457 COG4259 Uncharacterized protei 37.7 1.7E+02 0.0037 21.8 6.5 45 151-195 57-101 (121)
458 smart00777 Mad3_BUB1_I Mad3/BU 37.4 2.1E+02 0.0045 22.6 9.2 43 504-546 80-123 (125)
459 PF04910 Tcf25: Transcriptiona 36.8 4E+02 0.0087 25.8 22.0 57 354-410 110-167 (360)
460 cd07153 Fur_like Ferric uptake 36.8 1.1E+02 0.0025 23.4 5.7 46 494-539 7-52 (116)
461 KOG0292 Vesicle coat complex C 36.7 3.8E+02 0.0083 29.1 10.3 131 105-271 652-782 (1202)
462 PRK13184 pknD serine/threonine 35.5 6.8E+02 0.015 28.1 29.5 109 26-160 470-581 (932)
463 PRK09462 fur ferric uptake reg 34.8 2.5E+02 0.0054 22.9 7.8 37 502-538 32-68 (148)
464 PF10366 Vps39_1: Vacuolar sor 34.6 84 0.0018 24.0 4.4 26 490-515 42-67 (108)
465 PF11663 Toxin_YhaV: Toxin wit 34.5 35 0.00076 27.0 2.3 32 532-565 105-136 (140)
466 PHA02875 ankyrin repeat protei 34.3 4.7E+02 0.01 25.8 11.2 17 173-189 72-88 (413)
467 PF07720 TPR_3: Tetratricopept 33.6 1E+02 0.0022 17.9 3.7 23 524-546 3-25 (36)
468 PRK11639 zinc uptake transcrip 32.9 3E+02 0.0064 23.1 8.2 45 495-539 33-77 (169)
469 PF10366 Vps39_1: Vacuolar sor 32.8 1.3E+02 0.0028 23.0 5.1 27 244-270 41-67 (108)
470 KOG1839 Uncharacterized protei 32.7 7.4E+02 0.016 28.5 12.3 27 311-337 972-998 (1236)
471 COG5191 Uncharacterized conser 32.3 1.3E+02 0.0028 27.9 5.7 65 486-551 106-171 (435)
472 KOG2063 Vacuolar assembly/sort 32.0 7.4E+02 0.016 27.4 19.8 38 286-323 600-637 (877)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 32.0 2.6E+02 0.0055 22.1 8.8 44 184-232 81-124 (126)
474 KOG4567 GTPase-activating prot 31.7 3E+02 0.0065 25.7 7.8 43 438-480 264-306 (370)
475 PRK13342 recombination factor 31.2 5.3E+02 0.012 25.6 19.4 32 360-391 243-274 (413)
476 PRK11639 zinc uptake transcrip 31.2 2.9E+02 0.0064 23.2 7.5 59 124-183 19-77 (169)
477 KOG4567 GTPase-activating prot 31.1 4.5E+02 0.0097 24.6 9.4 88 472-568 263-360 (370)
478 KOG2422 Uncharacterized conser 31.0 6.1E+02 0.013 26.2 18.3 163 179-341 251-448 (665)
479 PF09454 Vps23_core: Vps23 cor 30.2 1.8E+02 0.0039 19.8 5.1 48 485-533 6-53 (65)
480 PF13934 ELYS: Nuclear pore co 30.0 4E+02 0.0087 23.7 15.6 168 294-474 27-198 (226)
481 cd07153 Fur_like Ferric uptake 30.0 1.5E+02 0.0033 22.7 5.4 47 137-183 6-52 (116)
482 PF06957 COPI_C: Coatomer (COP 29.2 5.8E+02 0.013 25.3 12.4 99 23-125 110-233 (422)
483 PRK09857 putative transposase; 29.1 4.4E+02 0.0095 24.6 8.9 63 493-556 212-274 (292)
484 COG5116 RPN2 26S proteasome re 28.8 5.2E+02 0.011 26.5 9.5 78 186-271 159-237 (926)
485 COG4976 Predicted methyltransf 28.1 1.5E+02 0.0033 26.2 5.2 56 356-412 4-59 (287)
486 KOG4279 Serine/threonine prote 28.0 7.8E+02 0.017 26.4 14.4 112 225-341 181-316 (1226)
487 PRK13184 pknD serine/threonine 27.8 9.1E+02 0.02 27.1 29.7 60 456-515 808-868 (932)
488 KOG1166 Mitotic checkpoint ser 27.1 3.5E+02 0.0075 30.3 8.8 75 499-573 90-165 (974)
489 PF15297 CKAP2_C: Cytoskeleton 26.9 5.7E+02 0.012 24.5 9.9 62 328-391 119-184 (353)
490 cd08819 CARD_MDA5_2 Caspase ac 26.8 2.5E+02 0.0055 20.4 7.0 9 328-336 52-60 (88)
491 COG4976 Predicted methyltransf 26.7 1.3E+02 0.0029 26.6 4.6 56 391-447 4-59 (287)
492 PF05944 Phage_term_smal: Phag 26.3 3.4E+02 0.0074 21.7 8.7 67 493-565 54-121 (132)
493 KOG0551 Hsp90 co-chaperone CNS 26.1 5.4E+02 0.012 24.5 8.5 99 96-195 81-182 (390)
494 PF01475 FUR: Ferric uptake re 25.7 2.3E+02 0.0049 22.0 5.7 48 135-182 11-58 (120)
495 PF02607 B12-binding_2: B12 bi 25.5 1.4E+02 0.003 20.9 4.0 34 535-568 14-47 (79)
496 PF09868 DUF2095: Uncharacteri 25.4 3.1E+02 0.0067 21.1 5.6 36 533-569 72-107 (128)
497 PRK12798 chemotaxis protein; R 25.3 6.7E+02 0.014 24.8 23.0 87 144-234 125-212 (421)
498 PRK13342 recombination factor 25.1 6.8E+02 0.015 24.8 19.0 21 431-451 244-264 (413)
499 KOG2168 Cullins [Cell cycle co 24.4 9.5E+02 0.021 26.2 20.6 20 286-305 477-496 (835)
500 COG2256 MGS1 ATPase related to 24.4 6.9E+02 0.015 24.6 15.6 51 276-326 245-298 (436)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-65 Score=534.53 Aligned_cols=512 Identities=19% Similarity=0.295 Sum_probs=481.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--HHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--RLNATGLFPNLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
..+++.|++++|+++|++|.+.+..+++...++.++.+|.+.|...+ .+......||..+|+.++.+|++.|+++.|.
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 34577899999999999999988765678888999999999999887 3444444599999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh--CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040027 197 GEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD--ENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ 274 (595)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 274 (595)
+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.|+.+|++.|++++|.++|+.|.+.|+.
T Consensus 538 ------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 538 ------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 889999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040027 275 PSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILI 354 (595)
Q Consensus 275 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (595)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040027 355 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYII 434 (595)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 434 (595)
.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHhcccCCCCCCHHHHH
Q 040027 435 EAVELFRTLRILKCELDIQAYNCLIDGLCK----S-------------------GRLKFAWELFCSLPHGVLVPNVVTYN 491 (595)
Q Consensus 435 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~ 491 (595)
+|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.||..||+
T Consensus 772 ~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~ 851 (1060)
T PLN03218 772 VGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 999999999999999999999999876432 1 12467999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDAS 558 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 558 (595)
.++.+++..+....+..+++.|...+..|+..+|+.+++++.+. .++|..++++|...|+.|+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99988888899999999999998888889999999999988332 368999999999999999864
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-66 Score=552.05 Aligned_cols=517 Identities=23% Similarity=0.334 Sum_probs=453.5
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT------RLNATGLFPNLYTYNILINCFCKIGRV 112 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 112 (595)
..|.+.|+++.|+++|+++. . ++..+|+.++.+|.+.|++++ +|...|+.||..+|+.++.+|...+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 34567788888888888772 2 577788888888888888776 566778888888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 113 SLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEM 192 (595)
Q Consensus 113 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 192 (595)
..+.+++..+.+.|+.||..+++.++.+|.+.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888886 457788888888888888888888888888
Q ss_pred HhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040027 193 ANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG 272 (595)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 272 (595)
...+ +.||..+|+.++.++.+.|+.+.|.+++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|++|.
T Consensus 280 ~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--- 350 (857)
T PLN03077 280 RELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--- 350 (857)
T ss_pred HHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Confidence 8877 7888888888888888888888888888888888888888889999999999999999999988885
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040027 273 VQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNI 352 (595)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (595)
.||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.++..+++.
T Consensus 351 -~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred -CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3688889999999999999999999999998888889999999999999999999999999999988888888889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040027 353 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY 432 (595)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 432 (595)
++.+|.+.|++++|.++|++|.+ ++..+|+.++.+|.+.|+.++|..+|++|.. ++.||..+|..++.+|++.|+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 99999999999999999988864 4778899999999999999999999999976 488999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 433 IIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLD 512 (595)
Q Consensus 433 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (595)
++.+.+++..+.+.|+.++..+++.++.+|.+.|++++|..+|+.+ .||..+|+.++.+|++.|+.++|+++|++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887 47999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCccc---ccchHHHHhh
Q 040027 513 MEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK-EKKVMPDASIVSIVVDLLVKNEISL---KSLPSFLVQE 584 (595)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~---~~i~~~~~~~ 584 (595)
|.+.|+.||..||..++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++++|.++|+++ +++++||.+|
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999 6799999999999999999999999 7777776443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-63 Score=517.08 Aligned_cols=510 Identities=17% Similarity=0.267 Sum_probs=472.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh------HHhhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 47 PNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT------RLNATGL-FPNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
...++...++.... .++...+..++..+.+.|++.+ .|...++ .++...++.++..|.+.|..++|..+|
T Consensus 353 ~~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf 429 (1060)
T PLN03218 353 EENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFA 429 (1060)
T ss_pred hhhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33444444444333 2467788888899999999887 6777775 468888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 040027 120 GRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEI 199 (595)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 199 (595)
+.|.. |+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|+.++|.++|++|...+
T Consensus 430 ~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--- 502 (1060)
T PLN03218 430 KLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--- 502 (1060)
T ss_pred HHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---
Confidence 98874 89999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCH
Q 040027 200 GVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMD--QGVQPSV 277 (595)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 277 (595)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||.
T Consensus 503 ---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 503 ---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred ---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 78999999999999999999999999999999999999999999999999999999999999999986 5789999
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040027 278 VTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGY 357 (595)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (595)
.+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040027 358 CKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAV 437 (595)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 437 (595)
.+.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----c-------------
Q 040027 438 ELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN----D------------- 500 (595)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------- 500 (595)
++|++|...|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 501 ------GQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 501 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
+..++|..+|++|.+.|+.||..+|..++.+++..+..+.+..+++.|...+..|+..+|..+++.+.+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 224679999999999999999999999998888889999999999999888888999999999998854
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-64 Score=537.28 Aligned_cols=510 Identities=19% Similarity=0.310 Sum_probs=486.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHHHHHHHHHHHhcC
Q 040027 37 TREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT------RLNATGLFPNLYTYNILINCFCKIG 110 (595)
Q Consensus 37 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g 110 (595)
...+|.+.|++++|+++|++|.+.+.. |+..+|+.++.++.+.+.... .+...|+.||+.+++.++..|.+.|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~-Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 345668899999999999999998877 899999999999999888765 6788999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFE 190 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (595)
+++.|..+|++|. .+|..+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.++.+.|+.+.+.+++.
T Consensus 237 ~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 237 DVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 9999999999986 568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 191 EMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
.+.+.+ ..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 313 ~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 313 YVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999988 889999999999999999999999999999964 6889999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 040027 271 QGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSY 350 (595)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 350 (595)
.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+ +|..+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~ 458 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISW 458 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 578899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 351 NILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKN 430 (595)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 430 (595)
+.++.+|.+.|+.++|+.+|++|.. ++.||..||..++.+|.+.|+.+.+.+++..+.+.|+.++..+++.++.+|++.
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 431 GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLF 510 (595)
Q Consensus 431 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 510 (595)
|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|
T Consensus 538 G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHH
Confidence 9999999999886 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 511 LDME-ENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 511 ~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
++|. +.|+.|+..+|..++.+|.+.|++++|.+++++|. +.||..+|.+++.+|...|+.+
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 9999 67999999999999999999999999999999984 7899999999999888877776
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-59 Score=485.30 Aligned_cols=469 Identities=18% Similarity=0.264 Sum_probs=444.5
Q ss_pred CCHhhHHHHHHHHHcCCCchh------HHhhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 040027 65 PPVSSFNILLASLAKNKHYDT------RLNAT-GLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSL 137 (595)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 137 (595)
.+..+|+.++.++.+.|++.+ .|... +..||..+|+.++.+|.+.++++.+.+++..+.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456799999999999999888 44444 36799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHH
Q 040027 138 IKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGL 217 (595)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (595)
+.+|.+.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|..++.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHH
Confidence 999999999999999999996 4799999999999999999999999999999887 789999999999999
Q ss_pred HHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 040027 218 CKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEAS 297 (595)
Q Consensus 218 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 297 (595)
.+.|..+.+.+++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999854 68999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 040027 298 RLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKG 377 (595)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 377 (595)
++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+.+.|++++..+++.++.+|++.|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCcCHHHHH
Q 040027 378 IKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRI-LKCELDIQAYN 456 (595)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 456 (595)
||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 689999999999999999999999999999999999999999999999999999999999999986 68899999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 040027 457 CLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN 536 (595)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 536 (595)
.++.+|.+.|++++|.++++++. +.|+..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|++.|
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCC
Confidence 99999999999999999999875 68999999999999999999999999999998754 335679999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCC
Q 040027 537 EPSKVNELLHKMKEKKVMP 555 (595)
Q Consensus 537 ~~~~A~~~~~~~~~~~~~p 555 (595)
++++|.+++++|.+.|+..
T Consensus 543 ~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred CHHHHHHHHHHHHHcCCcc
Confidence 9999999999999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.5e-58 Score=476.33 Aligned_cols=476 Identities=20% Similarity=0.277 Sum_probs=448.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHH
Q 040027 92 LFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSC-FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYN 170 (595)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (595)
...+..+|+.++..+.+.|++++|+.+|+.|...+ +.||..+|+.++.++.+.++++.|.+++..|.+.|+.||..+++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999998764 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 040027 171 TLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIH 250 (595)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 250 (595)
.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 999999999999999999999963 6789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040027 251 GLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINR 330 (595)
Q Consensus 251 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (595)
+|...|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999964 588999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040027 331 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 410 (595)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~- 387 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP- 387 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc-CCCCCCHHH
Q 040027 411 DGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH-GVLVPNVVT 489 (595)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~ 489 (595)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .++.|+..+
T Consensus 388 ---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 388 ---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred ---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 4688999999999999999999999999999999999999999999999999999999999999986 689999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLV 568 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 568 (595)
|+.++.+|++.|++++|.+++++| +..|+..+|..++.+|...|+++.|..+++++.+ +.| +..+|..++++|.
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN 539 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence 999999999999999999998876 5689999999999999999999999999999985 456 4789999999999
Q ss_pred hcCccc---ccchHHHHhhhhcccc
Q 040027 569 KNEISL---KSLPSFLVQERQGEVG 590 (595)
Q Consensus 569 ~~g~~~---~~i~~~~~~~~~~~~~ 590 (595)
+.|+++ ++.+.|....-+++++
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCC
Confidence 999999 6667776554444444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-34 Score=314.87 Aligned_cols=515 Identities=12% Similarity=0.038 Sum_probs=375.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT------RLNATGLFPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
.+.|++++|.+.|+++++.+|. ++..|..+...+...|++.+ ...... +.+...+..++..+.+.|++++|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPE--NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 4445555555555555555444 44444455555555555443 111111 11223344455555556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
..+++++.... +.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.|+++...
T Consensus 451 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 451 LAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666655542 4456667777777777777777777777776653 335556666777777777777777777777765
Q ss_pred CCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040027 196 NGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP 275 (595)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 275 (595)
. +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+. .+.
T Consensus 529 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 599 (899)
T TIGR02917 529 D-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APD 599 (899)
T ss_pred C-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCC
Confidence 4 4556677777777777788888888877776653 335666777777888888888888888887764 344
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040027 276 SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILIN 355 (595)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (595)
+...|..++.++...|++++|...|+.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 66778888888888888888888888887753 3356667778888888888888888888887764 455677888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040027 356 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIE 435 (595)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 435 (595)
.+...|++++|..+++.+.+..+ .+...+..+...+...|++++|.+.++.+...+ |+..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 88888888888888888877653 366677778888888899999999998888763 444677778888888999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 436 AVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 436 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
|...++++.+.. +.+...+..++..|...|++++|...|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 999999888765 6678888889999999999999999999988752 3467788888999999999 889999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccchHH
Q 040027 516 NAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~i~~~ 580 (595)
.. +.+..++..++.++...|++++|.++++++.+.+ +.++.++..++.+|.+.|+.+++++.+
T Consensus 832 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 832 LA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 63 4566777888899999999999999999999865 338899999999999999998655543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-33 Score=306.91 Aligned_cols=518 Identities=12% Similarity=0.057 Sum_probs=267.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--H---HhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--R---LNATGLFPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
+...|++++|...|+++++..|. ++..+..+...+.+.|++++ . -.....+.++..+..+...+.+.|++++|
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPN--SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45667777777777777777766 66666777777777777766 1 11112234566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
..+|+++.+.. +.+...+..+...+...|++++|++.++.+...... .......++..+.+.|++++|..+++.+...
T Consensus 383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77777777653 335556666666666677777777777666654321 2333344455555555555555555555543
Q ss_pred CCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040027 196 NGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP 275 (595)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 275 (595)
. +.++.++..+..++...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.|+++.... +.
T Consensus 461 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 461 Q-------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred C-------CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 2 3344555555555555555555555555555432 2234444445555555555555555555555432 12
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040027 276 SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILIN 355 (595)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (595)
+..++..+...+...|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..++.
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34444445555555555555555555554432 1233344444444455555555555555444332 333444444455
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----------------------
Q 040027 356 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG----------------------- 412 (595)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 412 (595)
++...|++++|+..|+++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555554444321 133344444444444445555555444444431
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 040027 413 ----------VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGV 482 (595)
Q Consensus 413 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 482 (595)
.+.+...+..+...+...|++++|...++++.... |+..++..++.++...|++++|...++++.+.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~- 765 (899)
T TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT- 765 (899)
T ss_pred HHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 13333444444444444455555555554444432 22234444444455555555555555544442
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 483 LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSI 562 (595)
Q Consensus 483 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 562 (595)
.+.+...+..++..|...|++++|...|+++.+.. +++..++..++..+...|+ .+|..+++++.+.. +-++.++..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHH
Confidence 12234444445555555555555555555555443 3344445555555555555 44555555555421 123444555
Q ss_pred HHHHHHhcCcccccchHH
Q 040027 563 VVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 563 l~~~~~~~g~~~~~i~~~ 580 (595)
++.++.+.|++++++..+
T Consensus 843 ~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 555555555555444443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=3.1e-26 Score=251.32 Aligned_cols=527 Identities=14% Similarity=0.058 Sum_probs=370.4
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHH----------------H
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT------RLNATGLFPNLYT----------------Y 99 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~----------------~ 99 (595)
...++.+.|.+.+++++..+|+ ++..+..++..+...|+.++ ++.... +.++.. .
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~ 115 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQA 115 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhH
Confidence 5679999999999999999999 89999999999999999888 222222 223333 2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 100 NILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSL-IKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
..+++.+.+.|++++|+..|+++.+.. +++...-... .......|+.++|++.++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445567889999999999999999874 3343321112 222234699999999999999875 4477788899999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCC------------cccc--------------CcHH----H-----------------HH
Q 040027 179 TGHTMIALNLFEEMANGNGEIG------------VVCK--------------PNTV----T-----------------YS 211 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~------------~~~~--------------~~~~----~-----------------~~ 211 (595)
.|+.++|+..++++........ .... |+.. . ..
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 9999999999999865321000 0000 0000 0 01
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH----------
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP-SVVTF---------- 280 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~---------- 280 (595)
.....+...|++++|+..|++..+.. +.+...+..|...+.+.|++++|+..|++.++..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 12445677899999999999998864 3378889999999999999999999999998753221 11111
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH----
Q 040027 281 --NVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILI---- 354 (595)
Q Consensus 281 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 354 (595)
......+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 123456778999999999999999874 3356677788999999999999999999998764 23333333332
Q ss_pred --------------------------------------HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040027 355 --------------------------------------NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH 396 (595)
Q Consensus 355 --------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 396 (595)
..+...|++++|++.|+++++..+. +...+..+...+...|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3344578888888888888876443 5566777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------
Q 040027 397 QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL------------------------------ 446 (595)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------ 446 (595)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 8888888888887652 334433333333333444444444443332100
Q ss_pred ---------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 447 ---------KCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 447 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
..+.+...+..+...+.+.|++++|+..|+++.+. .| +...+..++..|...|++++|++.++.+.+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 11445556677777888888888888888888873 44 4677888888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCcccccchHHH
Q 040027 517 AAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKV--MP---DASIVSIVVDLLVKNEISLKSLPSFL 581 (595)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~~i~~~~ 581 (595)
. +.+..++..+..++...|++++|.++++++....- .| +..++..+..++.+.|+.++++..+.
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 34456667777888888888888888888876421 12 23466667888888888886665544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.1e-25 Score=242.54 Aligned_cols=500 Identities=14% Similarity=0.058 Sum_probs=368.8
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhH----------------HHHHHHHHcCCCchh-----HHhhCCCCCCHH
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSF----------------NILLASLAKNKHYDT-----RLNATGLFPNLY 97 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~-----~~~~~~~~~~~~ 97 (595)
..+++.|++++|.+.++++++.+|+ ++..+ ..+...+...|++++ .....+.+|+..
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~ 147 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELD 147 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChH
Confidence 3447889999999999999999998 55443 334557888999888 122233344433
Q ss_pred HHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC--------------
Q 040027 98 TYN-ILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGC-------------- 162 (595)
Q Consensus 98 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------- 162 (595)
.-. .........|++++|+..++++.+.. +.+...+..+...+...|++++|++.++++.....
T Consensus 148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 148 LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 211 12222334699999999999999985 55777888999999999999999999998754311
Q ss_pred ----C--------------CCHhhH---------------------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccc
Q 040027 163 ----E--------------PNVITY---------------------NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVC 203 (595)
Q Consensus 163 ----~--------------~~~~~~---------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (595)
. |+.... ......+...|++++|+..|++..+.+
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~------- 299 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN------- 299 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 0 000000 012445667899999999999999875
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCC-CHhHH------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINP-DVVTY------------NSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
|.+..++..+..++.+.|++++|+..|++..+..... ....| ..+...+.+.|++++|...|+++++
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988764221 11112 1234567889999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---------------------------------
Q 040027 271 QGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNT--------------------------------- 317 (595)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------- 317 (595)
.. +.+...+..+..++...|++++|.+.|+++.+.... +...+..
T Consensus 380 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 380 VD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 63 335667788899999999999999999999876322 2222222
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 318 ---------LMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTL 388 (595)
Q Consensus 318 ---------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 388 (595)
+...+...|++++|+..|++..+.. +.+...+..+...|.+.|++++|...++++.+..+. +...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 2334556799999999999998874 456778888999999999999999999999875432 33333333
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC---------------------------------------CCCCCHHHHHHHHHHHHh
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRD---------------------------------------GVAADTRTYTTFIDGLCK 429 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~ 429 (595)
...+...++.++|...++.+... ..+.+...+..+...+.+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 33333444444444443322100 124566677788889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARD 508 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 508 (595)
.|++++|+..|+++++.. +.+...+..++.++...|++++|+..++.+.. ..| +...+..+..++...|++++|.+
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999876 67889999999999999999999999999887 344 45667778899999999999999
Q ss_pred HHHHHHHcCC--CC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCC
Q 040027 509 LFLDMEENAA--AP---DVITFDMLIHGFIRINEPSKVNELLHKMKE-KKVMP 555 (595)
Q Consensus 509 ~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 555 (595)
++++++.... +| +...+..+...+...|++++|...|+++.. .|+.|
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999987531 12 224566678889999999999999999974 34443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-26 Score=215.54 Aligned_cols=444 Identities=14% Similarity=0.099 Sum_probs=363.6
Q ss_pred hcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh-----HHhhCCCCCCHHHHHHHHHH
Q 040027 31 HFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT-----RLNATGLFPNLYTYNILINC 105 (595)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~ 105 (595)
...++.+++++-+.|+++.|.+...-+-+.+|. +......+-..+.+..+.+. ..-..-.+.-.++|+-+...
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANI 125 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHH
Confidence 344556778888999999999999999999987 55555566667777777776 11122233456888889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCChhH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNV-ITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 184 (595)
+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|...++. .|+. .....+...+-..|+..+
T Consensus 126 ~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccch
Confidence 999999999999999999985 447889999999999999999999999999887 4443 344556666677899999
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPD-VVTYNSLIHGLCHANDWNEAKR 263 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~ 263 (595)
|...+.+..... +.-..+|..|...+...|+...|++.|++.++.+ |+ ...|..|...|...+.+++|..
T Consensus 203 a~~cYlkAi~~q-------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 203 AKACYLKAIETQ-------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hHHHHHHHHhhC-------CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHH
Confidence 999999988864 3336789999999999999999999999998863 43 5678899999999999999999
Q ss_pred HHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040027 264 LFIEMMDQGVQP-SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMG 342 (595)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (595)
.|...... .| ....+..+.-.|..+|.++-|++.|++.++.... -+..|+.+..++...|+..+|.+.|.+.+...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99988775 34 4567888888899999999999999999986322 36789999999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 040027 343 CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAAD-TRTYT 421 (595)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 421 (595)
+....+.+.|...|...|.+++|..+|....+-.+. -....+.+...|-..|++++|+..|++.++- .|+ ...++
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~ 426 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALS 426 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHH
Confidence 556778899999999999999999999998875322 3456788888999999999999999999874 454 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHH
Q 040027 422 TFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLC 498 (595)
Q Consensus 422 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 498 (595)
.+...|...|+...|.+.+.+++..+ +.-...++.|...|...|+..+|+.-|++.+. ++|| +..+..++.++-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 89999999999999999999999765 55577889999999999999999999999988 7887 567777776554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.6e-23 Score=217.84 Aligned_cols=504 Identities=13% Similarity=0.043 Sum_probs=331.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--HHhhC--CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--RLNAT--GLFP-NLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
...|++++|+..|+.+++.+|+ ++.++..+..+|...|+.++ ..... ...| |...+..+ ... +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHH
Confidence 4459999999999999999999 79999999999999999998 22222 2233 44444444 222 8999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH-HHHHHhcCChhHHHH
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKG--------LHAESRIMEAAALFTKLKAFGCEPNVITYNTL-INGLCRTGHTMIALN 187 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 187 (595)
.+++++.... +-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999884 3345555555544 4444 44444444 3333233344444444 778888888888888
Q ss_pred HHHHHHhcCCCCCccccCcHHHHHHHHHHHHH-cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 188 LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK-EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFI 266 (595)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 266 (595)
++.++.+.+ +.+......+..+|.. .++ +++..+++.. .+.+...+..++..|.+.|+.++|.+++.
T Consensus 204 lL~~L~k~~-------pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 204 LYNEARQQN-------TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888887765 3334444445455554 244 4444443321 11245555555555555555555555554
Q ss_pred HHHHCCCC-C----------------------------------------------------------------------
Q 040027 267 EMMDQGVQ-P---------------------------------------------------------------------- 275 (595)
Q Consensus 267 ~~~~~~~~-~---------------------------------------------------------------------- 275 (595)
++...-.. |
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 44321000 0
Q ss_pred -----------------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---
Q 040027 276 -----------------------SVVTFNVIMDELCKNRKMDEASRLLDLMVQR--GVRPNACTYNTLMDGFCLMGK--- 327 (595)
Q Consensus 276 -----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--- 327 (595)
+......+.....+.|+.++|.++++..... +...+......++..|.+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 1111111222233455666666666655542 112233344456666666544
Q ss_pred HHHHHHH-------------------------HHHHHhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 040027 328 INRAEEL-------------------------FGSMESMGCKH--DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 380 (595)
Q Consensus 328 ~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 380 (595)
..++..+ +..+... .++ +...|..+..++.. ++.++|+..+.+..... |
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C
Confidence 2222222 1111111 133 56677777777776 78888999888877663 4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 040027 381 TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLID 460 (595)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 460 (595)
+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++++++.. +.+...+..+..
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 5444444455556899999999999987654 4555556677778888999999999999998765 444444445555
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 540 (595)
.....|++++|...+++..+ +.|+...+..+..++.+.|++++|+..++++++.. +.+...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 55566999999999999988 56788888899999999999999999999999875 5567788888889999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccccchHH
Q 040027 541 VNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 541 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~~i~~~ 580 (595)
|...++++.+. .| ++..+..++.++...|++++++..+
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999974 35 6788999999999999999555544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-25 Score=206.45 Aligned_cols=479 Identities=15% Similarity=0.086 Sum_probs=381.6
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 040027 52 CIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA 131 (595)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 131 (595)
+.|...+..+++ ...-+.++.-+.+.... ......+..-..+.|++.+|++.-..+-+.+ +.+.
T Consensus 19 ~~~~~~ld~~~~---s~~s~~v~qq~~~t~~~------------~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~ 82 (966)
T KOG4626|consen 19 EAFSRKLDQSVS---SSGSSSVLQQFNKTHEG------------SDDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNT 82 (966)
T ss_pred HHHHHHhccCcc---cccchHHHHHhccCCcc------------chhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcc
Confidence 666777766664 22233444433333221 1124567777888999999999887776664 3333
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHH
Q 040027 132 ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYS 211 (595)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (595)
.....+-..+.+..+.+....--....+.. +.-.++|..+...+-..|++++|+..++.+.+.. +.....|.
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~i 154 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYI 154 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHh
Confidence 443444455677777776665544444442 4467899999999999999999999999999875 45688999
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHh
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKDENINPDVVTY-NSLIHGLCHANDWNEAKRLFIEMMDQGVQPS-VVTFNVIMDELCK 289 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 289 (595)
.+..++...|+.+.|.+.|.+..+. .|+.... ..+...+...|+.++|...|.+.+.. .|. ...|..+.-.+..
T Consensus 155 nla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNA 230 (966)
T ss_pred hHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhh
Confidence 9999999999999999999998885 4554443 34556666789999999999998875 333 5678899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 040027 290 NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSL 369 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (595)
+|+...|+..|++.++.+.. -...|..|...|...+.++.|...|.+..... +.....+..+...|...|..+-|+..
T Consensus 231 ~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred cchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHH
Confidence 99999999999999986322 35678889999999999999999999988763 45566888888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 040027 370 YREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCE 449 (595)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 449 (595)
|++.++..+. -...|+.+..++-..|++.+|...|.+.+... +......+.+...|...|.+++|..+|....+.. +
T Consensus 309 Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p 385 (966)
T KOG4626|consen 309 YKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-P 385 (966)
T ss_pred HHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-h
Confidence 9999987443 46789999999999999999999999999873 5566788899999999999999999999998764 4
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD-VITFDM 527 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 527 (595)
.-...++.|...|-.+|++++|+..|++.++ +.|+ ...++.+...|-..|+.+.|+..+.+++.. .|. ...++.
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsN 461 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSN 461 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhh
Confidence 4467889999999999999999999999998 8888 578999999999999999999999999985 455 578899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 040027 528 LIHGFIRINEPSKVNELLHKMKEKKVMPD-ASIVSIVVDLLVK 569 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 569 (595)
|...|-.+|+..+|++-|++.++ ++|| +..+.-++.++.=
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHH
Confidence 99999999999999999999997 5676 4555555555443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.6e-24 Score=206.53 Aligned_cols=508 Identities=14% Similarity=0.071 Sum_probs=397.4
Q ss_pred hhhcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh-----HHhhCC---CCCCHHHHH
Q 040027 29 LVHFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT-----RLNATG---LFPNLYTYN 100 (595)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~ 100 (595)
...-.+.++++++.+.|+.+.|+..|.++++++|. ++.++-.|...-....+.+. .+.... -.-+|.+.+
T Consensus 197 ~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~--~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~ 274 (1018)
T KOG2002|consen 197 CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT--CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN 274 (1018)
T ss_pred cCCCccchhhhHHHhccchhhHHHHHHHHHhcChh--hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH
Confidence 34445567889999999999999999999999997 66666555555555554443 111111 235888899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFT--PNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
.|...|...|++..+..+...+...... .-...|..+.++|...|++++|...|-+..+....-....+..++..+..
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 9999999999999999999999886311 22445888999999999999999999998877432224456678899999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC----CHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG----FVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
.|+.+.+...|+.+.... |.+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+..
T Consensus 355 ~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 999999999999999875 667888888888888875 5677888888877763 4578889888888777
Q ss_pred cCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCC------CHHHHHHHHHH
Q 040027 255 ANDWNEAKRLFIEMM----DQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR---GVRP------NACTYNTLMDG 321 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~ 321 (595)
.+-+.. +..|..+. ..+.++.+...|.+...+...|+++.|...|...... ...+ +..+-..+.++
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 665555 77776554 3455577889999999999999999999999988765 1122 22344557777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 040027 322 FCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA 401 (595)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 401 (595)
.-..++.+.|.+.|..+.+.. |.-+..|..++.+....++..+|...+.+.....- .++..+..+...+.....+..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhccc
Confidence 888899999999999998863 22334555555444556788999999999887543 3667777777788888889888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 040027 402 LKLFDEMQRD-GVAADTRTYTTFIDGLCK------------NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 402 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (595)
.+-|..+.+. ...+|......|...|.+ .+..++|+++|.++++.. |.|..+-+.++-+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCc
Confidence 8877777654 234677777777776653 345788999999999877 77889999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN-AAAPDVITFDMLIHGFIRINEPSKVNELLHK 547 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (595)
.+|..+|.+..+.. ..+..+|..++.+|...|+|..|+++|+..... ....+......|..++.+.|.+.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999998853 235678999999999999999999999998875 3345678889999999999999999999999
Q ss_pred HHHC
Q 040027 548 MKEK 551 (595)
Q Consensus 548 ~~~~ 551 (595)
+...
T Consensus 742 a~~~ 745 (1018)
T KOG2002|consen 742 ARHL 745 (1018)
T ss_pred HHHh
Confidence 8864
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=5.1e-21 Score=200.71 Aligned_cols=314 Identities=12% Similarity=0.046 Sum_probs=234.4
Q ss_pred HHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHhcCC---hHHH----------------------HHHHHHHH
Q 040027 252 LCHANDWNEAKRLFIEMMDQ-G-VQPSVVTFNVIMDELCKNRK---MDEA----------------------SRLLDLMV 304 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a----------------------~~~~~~~~ 304 (595)
..+.|+.++|.++|...... + -.++......++..|...+. ...+ ...++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 34566777777777776652 1 12233344466777776655 2222 22222222
Q ss_pred HC-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 040027 305 QR-G-VRP--NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 380 (595)
Q Consensus 305 ~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 380 (595)
.. + .++ +...+..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 21 1 133 56677888888776 8888999988888766 355544444556667899999999999998665 34
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 040027 381 TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLID 460 (595)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 460 (595)
....+..+...+...|+.++|...+++..+.+ +.....+..+...+...|++++|...++++++.. |+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 55556777788899999999999999999864 3344444444445556799999999999999874 56889999999
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPS 539 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 539 (595)
++.+.|++++|+..+++... ..|+ ...++.+..++...|++++|+..++++++.. +.+...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998 4565 6788889999999999999999999999974 557788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCcccccch
Q 040027 540 KVNELLHKMKEKKVMPD-ASIVSIVVDLLVKNEISLKSLP 578 (595)
Q Consensus 540 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~~i~ 578 (595)
+|...++++.+. .|+ ..+....++.+.+..+++.+.+
T Consensus 695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 999999999974 464 4677777777777776664433
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.1e-21 Score=200.52 Aligned_cols=428 Identities=11% Similarity=-0.013 Sum_probs=306.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
+...+..+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.+++.++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677888899999999999999887 5677888888899999999999999999998874 3367788889999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCH
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDW 258 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 258 (595)
.|++++|+..|..+...+ +.+......++..+.. ..+........... +++...+..+...+ .....
T Consensus 207 lg~~~eA~~~~~~~~~~~-------~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~ 273 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-------GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRP 273 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccC
Confidence 999999998887766543 1122222222222211 12233333333321 22222333333222 21111
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHH---HHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040027 259 NEAKRLFIEMMDQGVQPS-VVTFNVIMDE---LCKNRKMDEASRLLDLMVQRG--VRPNACTYNTLMDGFCLMGKINRAE 332 (595)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 332 (595)
.....-+....+ ..+. ...+..+... ....+++++|.+.|+.+...+ .+.....+..+..++...|++++|+
T Consensus 274 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 274 KPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred Ccchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 111111211111 1111 1111111111 123478999999999998764 2234566788888899999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 333 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
..+++..+.. +.....|..+...+...|++++|+..|+++++..+. +...+..+...+...|++++|...|++.++..
T Consensus 352 ~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 352 ADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999998874 344668888999999999999999999999887433 67788889999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH-H---
Q 040027 413 VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV-V--- 488 (595)
Q Consensus 413 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~--- 488 (595)
+.+...+..+..++.+.|++++|+..+++.++.. +.+...++.+..++...|++++|+..|++... +.|+. .
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~ 505 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYM 505 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccc
Confidence 5567778888889999999999999999998765 66788999999999999999999999999887 33321 1
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 489 ----TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 489 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
.++..+..+...|++++|..+++++++.. +.+...+..++.++...|++++|.++|+++.+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222233445699999999999998864 445667888999999999999999999999875
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.2e-21 Score=188.23 Aligned_cols=520 Identities=13% Similarity=0.057 Sum_probs=344.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--HHhhC--CCCC-CHHHHHHHHHHHHh---cCChh
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--RLNAT--GLFP-NLYTYNILINCFCK---IGRVS 113 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~--~~~~-~~~~~~~l~~~~~~---~g~~~ 113 (595)
-+.|+|..|+.+|..++..+|. ..+...-.+..++++.|.... ..+.. .+.| ++..+..|...-.. ...+.
T Consensus 175 ynkkdY~~al~yyk~al~inp~-~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPA-CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcc-cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 4556777777777777766665 223333334455566665554 11111 1222 22222222222111 23345
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040027 114 LGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCE--PNVITYNTLINGLCRTGHTMIALNLFEE 191 (595)
Q Consensus 114 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 191 (595)
.++.++.++.... +.++.+.+.|...+...|++..+..+...+...... .-...|..+.++|...|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5666666666553 446677777777777778888888777777654211 1234467777888888888888888877
Q ss_pred HHhcCCCCCccccCc-HHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHH
Q 040027 192 MANGNGEIGVVCKPN-TVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN----DWNEAKRLFI 266 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~ 266 (595)
..+.+ +.+ ...+..+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.
T Consensus 333 s~k~~-------~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 333 SLKAD-------NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHccC-------CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 77654 122 3445567777888888888888888777653 335666666666666654 4456666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 040027 267 EMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMV----QRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESM- 341 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 341 (595)
+..+.- +.|...|..+...+....- ..++.+|..+. ..+..+.+...+.++..+...|++..|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 665542 3356666666665554433 33366665444 3444466777888888888888888888888877644
Q ss_pred --CCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 040027 342 --GCKHDD------VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGV 413 (595)
Q Consensus 342 --~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 413 (595)
...++. .+-..+..++-..++.+.|.+.|..+.+..+. -+..|..++......+...+|...++.+...+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 112222 23445666677777888888888888776322 33445555434444577788888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHh------------cCChHHHHHHHHhccc
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILK-CELDIQAYNCLIDGLCK------------SGRLKFAWELFCSLPH 480 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~ 480 (595)
..++..++.+...+.+...+..|..-|+.+.+.. ..+|+.+...|++.|.. .+..++|+++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 5566677777778888888888888777666432 13577777788876653 3457789999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHH
Q 040027 481 GVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKV-MPDASI 559 (595)
Q Consensus 481 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~ 559 (595)
. -+-|...-|.+..+++..|++.+|..+|.+..+.. .....+|..++++|..+|+|..|.++|+...+.-. .-+..+
T Consensus 641 ~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 N-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred c-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4 23366777888899999999999999999999874 34667899999999999999999999999986533 347899
Q ss_pred HHHHHHHHHhcCcccccc
Q 040027 560 VSIVVDLLVKNEISLKSL 577 (595)
Q Consensus 560 ~~~l~~~~~~~g~~~~~i 577 (595)
...|.+++.+.|++.+..
T Consensus 719 l~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 999999999999988333
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=8.4e-20 Score=188.62 Aligned_cols=424 Identities=13% Similarity=0.021 Sum_probs=306.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHH
Q 040027 133 TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYST 212 (595)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (595)
.+......+.+.|++++|+..|++.+.. .|+...|..+..+|...|++++|+..++...+.+ +.+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHH
Confidence 3456677889999999999999999876 5678889999999999999999999999999876 556889999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 040027 213 IIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRK 292 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (595)
+..+|...|++++|...|..+...+.. +......++..+.. ..+........+.. +++...+..+...+ ....
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~ 272 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFR 272 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHcc
Confidence 999999999999999988776554211 22212222222221 22233333333321 22333333333322 2212
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhCCCHHHH
Q 040027 293 MDEASRLLDLMVQRGVRPN-ACTYNTLMDGF---CLMGKINRAEELFGSMESMG--CKHDDVSYNILINGYCKNKEVEEA 366 (595)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 366 (595)
......-+...... .+. ...+..+...+ ...+++++|...|+...+.+ .+.....+..+..++...|++++|
T Consensus 273 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 273 PKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred CCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 22222222221111 111 11111111111 23478999999999998764 133445788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040027 367 LSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL 446 (595)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 446 (595)
+..+++.++..+. ....|..+...+...|++++|...++++++.. +.+..++..+...+...|++++|...|++.++.
T Consensus 351 ~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 351 LADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999986432 46678888889999999999999999998874 566888999999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--
Q 040027 447 KCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVI-- 523 (595)
Q Consensus 447 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 523 (595)
. +.+...+..+..++.+.|++++|+..|++.... .| +...++.+..++...|++++|++.|+++++.....+..
T Consensus 429 ~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 429 D-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred C-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 6 667888889999999999999999999999873 45 47889999999999999999999999999863211111
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccccchHHH
Q 040027 524 ----TFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISLKSLPSFL 581 (595)
Q Consensus 524 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~~i~~~~ 581 (595)
.+...+..+...|++++|.++++++++. .| +...+..++.++.+.|+++++++.+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1122222334469999999999999875 35 45678899999999999997666554
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.7e-21 Score=191.33 Aligned_cols=312 Identities=15% Similarity=0.129 Sum_probs=215.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 040027 250 HGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPN---ACTYNTLMDGFCLMG 326 (595)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 326 (595)
..+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666666542 22344566666666666666666666666665422111 234566677777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHH
Q 040027 327 KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV----VTYNTLFLGLFEIHQVEHAL 402 (595)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 402 (595)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 7777777777776642 345566777777777777777777777777765433221 13445566677788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 040027 403 KLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGV 482 (595)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 482 (595)
..++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 8888887653 3445667777788888888888888888888654222245677888888888999999999888887
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHH
Q 040027 483 LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIR---INEPSKVNELLHKMKEKKVMPDASI 559 (595)
Q Consensus 483 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~ 559 (595)
..|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 4567666778888888899999999999888875 5777777777776664 458888999999888877777766
Q ss_pred HHHHHHHHHhcCccc
Q 040027 560 VSIVVDLLVKNEISL 574 (595)
Q Consensus 560 ~~~l~~~~~~~g~~~ 574 (595)
.+|..+|...
T Consensus 355 -----~~c~~cg~~~ 364 (389)
T PRK11788 355 -----YRCRNCGFTA 364 (389)
T ss_pred -----EECCCCCCCC
Confidence 3355555543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.5e-20 Score=188.06 Aligned_cols=356 Identities=12% Similarity=0.044 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
.....++..+.+.|++++|..+++..+... +.+...+..++.+....|++++|+..|+++.... +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334456667778888888888888887774 3345556666667777888888888888888764 33566777778888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 256 (595)
...|++++|+..++++.... |.+...+..++.++...|++++|...++.+...... +...+..+ ..+...|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g 191 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKS 191 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcC
Confidence 88888888888888888764 455777777888888888888888888877655322 33333333 3467778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HH
Q 040027 257 DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINR----AE 332 (595)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 332 (595)
++++|...++.+++....++......++..+...|++++|...++++...+ +.+...+..+..++...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 888888888887765333334444555667778888888888888887764 3356667777788888888775 67
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 333 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
..++++.+.. |.+...+..+...+...|++++|+..++++....+. +...+..+...+...|++++|...++.+.+.+
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7888777664 445667777788888888888888888887776433 45566667777778888888888888777652
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 413 VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 413 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+.+...+..+..++...|+.++|...|+++.+.. |+.. ...+++|...+.+..+
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEEGLLALDGQIS 402 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHHHHHHHHHHHH
Confidence 2222333344566777888888888888877653 2211 2344556666665555
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3.7e-19 Score=187.09 Aligned_cols=419 Identities=12% Similarity=0.014 Sum_probs=215.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 180 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (595)
-.+.+....|+.++|+.+|.++.... +.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33444444555555555555554321 2333344455555555555555555555544442 223444444444555555
Q ss_pred ChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHH
Q 040027 181 HTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNE 260 (595)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 260 (595)
++++|+..++++.... |.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+..++
T Consensus 98 ~~~eA~~~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred CHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 5555555555554443 23333 4444445555555555555555554432 1133333344444444455555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCH---HHHH
Q 040027 261 AKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC-----LMGKI---NRAE 332 (595)
Q Consensus 261 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a~ 332 (595)
|+..++.+.. .|+... +. .......+++... ..+++ ++|+
T Consensus 169 Al~~l~~~~~---~p~~~~---------------------------~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 169 ALGAIDDANL---TPAEKR---------------------------DL--EADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHHhCCC---CHHHHH---------------------------HH--HHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 5544443332 111000 00 0000111111111 11122 5566
Q ss_pred HHHHHHHhc-CCCCCHH-HH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Q 040027 333 ELFGSMESM-GCKHDDV-SY----NILINGYCKNKEVEEALSLYREMVSKGIK-PTVVTYNTLFLGLFEIHQVEHALKLF 405 (595)
Q Consensus 333 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 405 (595)
..++.+.+. ...|+.. .+ ...+..+...+++++|+..|+.+.+.+.+ |+. ....+...+...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666665533 1111111 11 11122334556777777777776665422 221 1222355666677777777777
Q ss_pred HHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhcCCh
Q 040027 406 DEMQRDGVAA---DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC-----------ELD---IQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 406 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~ 468 (595)
+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..++..+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 7666532110 123344455556677777777777776665420 112 23445566677778888
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
++|+.+++++... .+.+...+..++..+...|++++|++.++++++.. |.+...+...+..+...|++++|..+++++
T Consensus 376 ~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 376 PQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888887763 22245677777777778888888888888887754 444566666677777788888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q 040027 549 KEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 549 ~~~~~~p~~~~~~~l~~~~ 567 (595)
++. .|+......+-..+
T Consensus 454 l~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 454 VAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHh--CCCCHHHHHHHHHH
Confidence 863 46655555555544
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.5e-19 Score=185.80 Aligned_cols=357 Identities=9% Similarity=-0.020 Sum_probs=283.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCCchh-----HHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPP-PVSSFNILLASLAKNKHYDT-----RLNATGLFPNLYTYNILINCFCKIGRVSL 114 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 114 (595)
++++.+++.---+|...-+.+.... +..-....+..+.+.|++.+ .......+.++..+..++......|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 4566777776666665544433211 23445567788899999887 22333344456667777788888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 115 GFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 115 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (595)
|+..++++.... |.+...+..+...+...|++++|+..++++.... +.+...+..++..+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999985 5577888899999999999999999999999874 44677888999999999999999999998877
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040027 195 GNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ 274 (595)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 274 (595)
.. +.+...+..+ ..+...|++++|...++.+......++...+..++..+...|++++|...++++.... +
T Consensus 173 ~~-------P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 173 EV-------PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred hC-------CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 64 3344455444 3478899999999999998876433445555666788999999999999999999864 3
Q ss_pred CCHhhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 040027 275 PSVVTFNVIMDELCKNRKMDE----ASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSY 350 (595)
Q Consensus 275 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 350 (595)
.+...+..+...+...|++++ |...|+++.+.. +.+...+..+...+...|++++|+..++++.... +.+...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 367788889999999999986 899999999874 3367788899999999999999999999999874 4566778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 351 NILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
..+..++.+.|++++|+..|+++...++. +...+..+..++...|++++|...|+++.+.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999886432 2233444567788999999999999999876
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=5.8e-19 Score=185.60 Aligned_cols=432 Identities=9% Similarity=-0.016 Sum_probs=262.9
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh---HHhhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 040027 52 CIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT---RLNAT--GLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSC 126 (595)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 126 (595)
..++. -+.+|. ++.-..-.+.+..-.|+.++ ..... .-+.+...+..+...+...|++++|..+|+++++..
T Consensus 3 ~~~~~-~~~~~~--~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 3 SWLRQ-ALKSAL--SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred hhhhh-hhccCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34444 344444 55555555666777888777 11111 123455678999999999999999999999999884
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCc
Q 040027 127 FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPN 206 (595)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 206 (595)
+.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+
T Consensus 80 -P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~ 149 (765)
T PRK10049 80 -PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQT 149 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC
Confidence 5567788888899999999999999999999874 34566 8889999999999999999999999976 566
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHh------HHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-
Q 040027 207 TVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVV------TYNSLIHGLCH-----ANDW---NEAKRLFIEMMDQ- 271 (595)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~-----~~~~---~~A~~~~~~~~~~- 271 (595)
...+..+..++...+..++|.+.++.+.. .|+.. ....++..... .+++ ++|+..++.+.+.
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 77778888889899999999999987764 23310 11111111111 1122 4455555555432
Q ss_pred CCCCCHh-hHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 040027 272 GVQPSVV-TFN----VIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKH- 345 (595)
Q Consensus 272 ~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 345 (595)
...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+..+|...|++++|+.+|+++.+.....
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 1111111 110 0122233445555555555555444321011111123444555555555555555544331000
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 040027 346 --DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAAD---TRTY 420 (595)
Q Consensus 346 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 420 (595)
.......+..++...|++++|...++.+....+. ....+. .. ...|+ ...+
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~---------------------~~--~~~p~~~~~~a~ 362 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG---------------------SP--TSIPNDDWLQGQ 362 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC---------------------CC--CCCCCchHHHHH
Confidence 0122333344444555555555555544443110 000000 00 00122 1244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHh
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCN 499 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 499 (595)
..+...+...|++++|+.+++++.... |.+...+..++..+...|++++|++.++++.. +.|+ ...+..++..+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHH
Confidence 556667777888888888888887765 66677888888888888888888888888877 4565 5566667777778
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040027 500 DGQMDKARDLFLDMEENAAAPDVITFDML 528 (595)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 528 (595)
.|++++|+.+++++++. .|+......+
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88888888888888875 3444433333
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.3e-20 Score=185.19 Aligned_cols=304 Identities=15% Similarity=0.061 Sum_probs=145.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCC
Q 040027 105 CFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN---VITYNTLINGLCRTGH 181 (595)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 181 (595)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445556666666666665553 23344555555555555666666655555554321111 1234444555555555
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040027 182 TMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEA 261 (595)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 261 (595)
+++|..+|+++.+.. +.+..++..++.++...|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------
Confidence 555555555555432 23344455555555555555555555555544321111000
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040027 262 KRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESM 341 (595)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 341 (595)
....+..++..+.+.|++++|...++++.+.. +.+...+..++..+...|++++|.++++++.+.
T Consensus 179 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 179 --------------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred --------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00122333444444555555555555544432 112334444455555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040027 342 GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYT 421 (595)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 421 (595)
+.......+..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 21111233445555555555555555555555544 233333455555555555555555555555543 34555555
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcCCCcCH
Q 040027 422 TFIDGLCK---NGYIIEAVELFRTLRILKCELDI 452 (595)
Q Consensus 422 ~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 452 (595)
.++..+.. .|+.+++..+++++.+.++.|++
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44444432 33555555555555544433333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.1e-17 Score=172.24 Aligned_cols=423 Identities=10% Similarity=0.017 Sum_probs=226.9
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHcCCCchh--HHhhCCCCCC---HHHHHHHHHHHHhcCChhHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPV-SSFNILLASLAKNKHYDT--RLNATGLFPN---LYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 115 (595)
.+.|+++.|+..|+++++.+|. ++ ..+ -++..+...|+..+ ......+.|+ ......++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~--~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPL--QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCcc--chhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7889999999999999999998 43 333 66667777777776 2222222332 22223335567777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
+.+|+++++.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 88888888775 335666667777777788888888888887765 444444444444444455665688888888776
Q ss_pred CCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHH------HHHHHHH---H--hcCC---HHHH
Q 040027 196 NGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTY------NSLIHGL---C--HAND---WNEA 261 (595)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~~~---~~~A 261 (595)
+ |.+...+..+..++.+.|-...|.++..+-... +.+....+ ..+++.- . ...+ .+.|
T Consensus 199 ~-------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 199 A-------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred C-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 5 456777777777777777777777666554322 11111111 0001000 0 0111 2334
Q ss_pred HHHHHHHHHC-CCCCCH-h----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040027 262 KRLFIEMMDQ-GVQPSV-V----TFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELF 335 (595)
Q Consensus 262 ~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (595)
+.-++.+... +..|.. . .....+-++...|++.++++.|+.+...+.+....+-..++.+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4444444332 111211 1 111233455556666666666666665554444445555666666666666666666
Q ss_pred HHHHhcCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHccC
Q 040027 336 GSMESMGC-----KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGI-----------KP--TV-VTYNTLFLGLFEIH 396 (595)
Q Consensus 336 ~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~~~~~~ 396 (595)
+.+..... +++......|..+|...+++++|..+++++.+..+ .| +- .....++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 66544320 11222234555666666666666666666655211 01 11 11222333344445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040027 397 QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFC 476 (595)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (595)
+..+|++.++.+... .|-+......+...+...|.+.+|...++.+.... +.+..+....+.++...+++++|..+.+
T Consensus 431 dl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 431 DLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555555555554443 24444444444444455555555555554444332 3334444444444444455555544444
Q ss_pred hccc
Q 040027 477 SLPH 480 (595)
Q Consensus 477 ~~~~ 480 (595)
.+.+
T Consensus 509 ~l~~ 512 (822)
T PRK14574 509 DVIS 512 (822)
T ss_pred HHHh
Confidence 4444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.6e-17 Score=169.51 Aligned_cols=449 Identities=12% Similarity=0.029 Sum_probs=326.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA--ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
+.+.-.-+-...+.|+++.|+..|+++++.. |+. .++ .++..+...|+.++|+..+++..... +........++
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3333344445778999999999999999884 443 344 88888888999999999999998321 22333344446
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
..+...|++++|+++|+++.+.+ |.++..+..++..+...++.++|++.++++... .|+...+..++..+.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 68888999999999999999986 566788888889999999999999999999886 455555655555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH---H-
Q 040027 254 HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACT------YNTLMDGF---C- 323 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~- 323 (595)
..++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+.... ....++.- .
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677767999999999873 336777788889999999999888777653321 1111100 11111110 0
Q ss_pred -hcCC---HHHHHHHHHHHHhc-CCCCCH-H----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 324 -LMGK---INRAEELFGSMESM-GCKHDD-V----SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLF 393 (595)
Q Consensus 324 -~~~~---~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (595)
...+ .+.|..-++.+... +..|.. . ...-.+.++...+++.++++.|+.+...+.+....+...+..+|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1122 34455555555542 111221 1 223446677889999999999999998876655567888999999
Q ss_pred ccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CcC---HHH
Q 040027 394 EIHQVEHALKLFDEMQRDG-----VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC-----------ELD---IQA 454 (595)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~ 454 (595)
..+++++|..+|..+.... .+++......|.-+|...+++++|..+++++.+... .|+ ...
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999987642 123444457788889999999999999999987321 112 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
+..++..+...|++.+|++.++++... .| |......+...+...|.+.+|...++.+.... +.+..+....+.++.
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al 495 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHH
Confidence 455677788999999999999999874 44 67888999999999999999999997777763 555677788889999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 534 RINEPSKVNELLHKMKEKKVMPDASIVSIVV 564 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 564 (595)
..|++.+|..+.+.+.+. .|+......+-
T Consensus 496 ~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 496 ALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred hhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 999999999999999874 46554444433
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.5e-17 Score=156.37 Aligned_cols=515 Identities=12% Similarity=0.054 Sum_probs=413.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 46 TPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATG---LFPNLYTYNILINCFCKIGRVSLGFIAFGRI 122 (595)
Q Consensus 46 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 122 (595)
+...=.++++++++..|. ++..|...... .......-|.... .+.+...|.+ +.+..-|+.|..++..+
T Consensus 361 ~~~~K~RVlRKALe~iP~--sv~LWKaAVel--E~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNka 432 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPR--SVRLWKAAVEL--EEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKA 432 (913)
T ss_pred HHHHHHHHHHHHHHhCCc--hHHHHHHHHhc--cChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 345556899999999998 88999876642 1111111333333 2345666664 45567789999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH----HHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040027 123 LRSCFTPNAATFNSLIKGLHAESRIMEAAALFTK----LKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGE 198 (595)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (595)
.+. ++.+..+|......--.+|+.+...++.++ +...|+..+...|..=...+-..|..-.+..++...+..+.+
T Consensus 433 Re~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 433 REI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred Hhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 887 577899998888877889999999988776 445688889999999999999999999999999988876622
Q ss_pred CCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 040027 199 IGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVV 278 (595)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 278 (595)
-.....+|..-...|.+.+.++-|..+|....+. ++-+...|......--..|..++...++++.... .+....
T Consensus 512 ----eed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~ 585 (913)
T KOG0495|consen 512 ----EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEI 585 (913)
T ss_pred ----cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchh
Confidence 1233678999999999999999999999999886 3457778888888888889999999999999987 344666
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040027 279 TFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYC 358 (595)
Q Consensus 279 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (595)
.|......+...|+...|..++..+.+.+. .+...+...+..-....+++.|..+|.+.... .++...|..-+..--
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 788888888999999999999999998753 37888888899999999999999999998876 577778887787777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040027 359 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVE 438 (595)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 438 (595)
-.++.++|++++++.++.- +.-...|..+.+.+.+.++.+.|...|..-.+. ++.....|..+...--+.|.+-+|..
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHH
Confidence 8899999999999998862 324567888889999999999999999887776 46666777777777788899999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 040027 439 LFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA 518 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (595)
++++....+ |.+...|...+++-.+.|+.+.|..+..++++. .+.+...|..-|....+.++-....+.+++.
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc----- 813 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----- 813 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----
Confidence 999999877 788999999999999999999999999998875 4445678888888888887766666655544
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCccc---ccchHH-HHhhhhccc
Q 040027 519 APDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD-ASIVSIVVDLLVKNEISL---KSLPSF-LVQERQGEV 589 (595)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~---~~i~~~-~~~~~~~~~ 589 (595)
..|+.....+...|....++++|.++|++.++.+ || -.+|..+...+.+.|.-+ ++++++ ..+|+.|+.
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~ 887 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGEL 887 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcH
Confidence 3466777788888899999999999999999754 64 588888899999999665 555554 355555543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=2.7e-17 Score=160.82 Aligned_cols=361 Identities=14% Similarity=0.127 Sum_probs=268.5
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh----HHhhCCCC-CCHHHHHHHHHHHHhcCC
Q 040027 37 TREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT----RLNATGLF-PNLYTYNILINCFCKIGR 111 (595)
Q Consensus 37 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~l~~~~~~~g~ 111 (595)
.+.-+-.+|++++|.+++.++++.+|. ++..|..|..+|-..|+... .+....+. .|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 333444559999999999999999998 99999999999999998887 44445544 488999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHH----HHHHHHHhcCChhHHHH
Q 040027 112 VSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYN----TLINGLCRTGHTMIALN 187 (595)
Q Consensus 112 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 187 (595)
+++|+-.|.++++.. +++....-.-...|-+.|+...|.+.|.++.....+.|..-.. ..+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999996 4555555566778899999999999999999885433333333 34556677888899999
Q ss_pred HHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC---------------------------CCC
Q 040027 188 LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN---------------------------INP 240 (595)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~ 240 (595)
.++....... -..+...++.++..+.+...++.+........... ..+
T Consensus 302 ~le~~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 302 ALEGALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999887432 13445678889999999999999988887776621 122
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 241 DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG--VQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTL 318 (595)
Q Consensus 241 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 318 (595)
+... ..++-++.+.+..+....+...+.... +..+...|..+..++...|++.+|+++|..+......-+..+|..+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122334444444444444444444444 3345667888999999999999999999999987655678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHH
Q 040027 319 MDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK--------GIKPTVVTYNTLFL 390 (595)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~ 390 (595)
+.+|...|.++.|++.|+.++... |.+...-..|...+.+.|+.++|.+.+..+... +..|+.........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999998874 556667788888999999999999999886532 22333334444445
Q ss_pred HHHccCCHHHHHHHHHH
Q 040027 391 GLFEIHQVEHALKLFDE 407 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~ 407 (595)
.+...|+.++-..+...
T Consensus 535 ~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 535 ILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 55666666554444333
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.8e-17 Score=146.06 Aligned_cols=438 Identities=11% Similarity=0.090 Sum_probs=325.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.+...|...+.+-.+....+.|+.+|++++..- |.-...|-..+-+--..|++..|.++|++.... .|+..+|.+.+
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI 181 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFI 181 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 466778888888888899999999999998873 333345555555556679999999999998876 78999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-CC-CCCHhHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-NI-NPDVVTYNSLIHG 251 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~ 251 (595)
..-.+...++.|..++++.+- +.|+...|......-.++|...-|..+|+...+. |- ..+...+.+....
T Consensus 182 ~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999876 5688999988888888999999999999887764 10 1123345555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHH--------HHHHHHCCCCCCHHHHHHHHHH
Q 040027 252 LCHANDWNEAKRLFIEMMDQGVQPS--VVTFNVIMDELCKNRKMDEASRL--------LDLMVQRGVRPNACTYNTLMDG 321 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~ 321 (595)
-..+..++.|.-+|+-.+++ ++.+ ...|..+...--+-|+.....+. |+.+++.+ +.|-.+|...++.
T Consensus 254 Ee~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL 331 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHH
Confidence 56678889999999888876 3323 33455555444455665544333 44555543 4477788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHH--------HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 322 FCLMGKINRAEELFGSMESMGCKHDDV--SYNILING--------YCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 391 (595)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (595)
-...|+.+...++|++++.. ++|-.. .|...|.. -....+.+.+.++|+..++. ++....||..+--.
T Consensus 332 ~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLM 409 (677)
T ss_pred HHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHH
Confidence 88889999999999998875 344221 23222221 23478899999999998884 55566666555444
Q ss_pred H----HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 040027 392 L----FEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 392 ~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (595)
| .++.++..|.+++...+. .-|...++...|..-.+.++++.+..+|++.++.+ |.+..+|......-...|+
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhh
Confidence 4 467889999999988875 47888999999999999999999999999999887 7788999999988889999
Q ss_pred hHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HcC-----
Q 040027 468 LKFAWELFCSLPHGV-LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI-----RIN----- 536 (595)
Q Consensus 468 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g----- 536 (595)
.+.|..+|.-+++.. +......|-+.|..-...|.++.|..+++++++. .+....|.....--. ..+
T Consensus 487 tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~ 564 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAE 564 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhh
Confidence 999999999988742 1223456777777777899999999999999986 344455655543222 233
Q ss_pred ------ChhHHHHHHHHHHHC
Q 040027 537 ------EPSKVNELLHKMKEK 551 (595)
Q Consensus 537 ------~~~~A~~~~~~~~~~ 551 (595)
....|.++|+++...
T Consensus 565 ~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 565 LEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhcchhHHHHHHHHHHHHHHH
Confidence 467888999988743
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.2e-18 Score=156.86 Aligned_cols=473 Identities=15% Similarity=0.118 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhcCCCCC----HhhHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFN-SLIKGLHAESRIMEAAALFTKLKAFGCEPN----VITYN 170 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~ 170 (595)
-.+...|...|.......+|+..|+-+++...-|+..... .+...+.+..++..|++.|+..+..-+..+ ..+.+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3444556677777888999999999999887777766553 455778899999999999998887632222 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCC-----------
Q 040027 171 TLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENIN----------- 239 (595)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------- 239 (595)
.+...+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+.++..+.|.+|...-..
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 66667889999999999999998865 77666666777777889999999999999764222
Q ss_pred -CCHhHHHHHH-----HHHHhc--CCHHHHHHHHHHHHHCCCCCCHhh---HH------------------HHHHHHHhc
Q 040027 240 -PDVVTYNSLI-----HGLCHA--NDWNEAKRLFIEMMDQGVQPSVVT---FN------------------VIMDELCKN 290 (595)
Q Consensus 240 -~~~~~~~~ll-----~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~---~~------------------~l~~~~~~~ 290 (595)
|+....+.-+ ...-+. .+-++++-.-.+++.--+.|+-.. |. .-...+.+.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 2222222222 111111 122233322222322222233110 10 112346789
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 040027 291 RKMDEASRLLDLMVQRGVRPNACTYNTLMDGF-CL-MGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALS 368 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (595)
|+++.|.+++.-..+.+-+.-....+.+...+ .+ ..++..|.++-+..+..+ ..+......-...-..+|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999999887764333333333333332 22 346788888777776543 3444444444455566899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 040027 369 LYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC 448 (595)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 448 (595)
.|++.+..+.. -...+..+...+...|+.++|+..|-++..- +..+..++..+...|-...+...|++++.+.... +
T Consensus 512 ~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 99999986332 2233334445677899999999999887653 3456778888889999999999999999998765 3
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDML 528 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 528 (595)
+.|+.+...|...|-+.|+-.+|.+.+-.--+. ++.|..+...|...|....-+++|+.+|+++.- +.|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 889999999999999999999999987666553 566889999999999999999999999999876 68999999877
Q ss_pred HHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc--ccchHHHHhh
Q 040027 529 IHG-FIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL--KSLPSFLVQE 584 (595)
Q Consensus 529 ~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~~i~~~~~~~ 584 (595)
+.. +.+.|++++|..+|+....+ ++.|..++..+++++..-|..+ +..+++.+..
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 654 45789999999999999874 6779999999999999999887 5555444333
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=1.5e-16 Score=149.87 Aligned_cols=507 Identities=11% Similarity=0.023 Sum_probs=398.4
Q ss_pred hhhhcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh-----HHhhCCCCCCHHHHHHH
Q 040027 28 LLVHFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT-----RLNATGLFPNLYTYNIL 102 (595)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l 102 (595)
+--.+.+..++-.-+..-+.++|+.++.++.+.-|. +...|.++.+ ...+.. --....++-++..|.+.
T Consensus 373 Le~iP~sv~LWKaAVelE~~~darilL~rAveccp~--s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWita 446 (913)
T KOG0495|consen 373 LEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQ--SMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITA 446 (913)
T ss_pred HHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccc--hHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHH
Confidence 333444555566666777888899999999999887 7777765543 222222 11234566789999998
Q ss_pred HHHHHhcCChhHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--CHhhHHHHHHHH
Q 040027 103 INCFCKIGRVSLGFIAFGRIL----RSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP--NVITYNTLINGL 176 (595)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 176 (595)
...--+.|+.+...++..+.+ ..|+.-+...|..=...|-..|..-.+..+....+..|++- -..+|..-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 888888999999988888754 35778888999888888988999999999999888887663 246788888899
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 256 (595)
.+.+.++-|..+|...++.. +.+...|...+..--..|..+.-..+|+++... ++-....|......+-..|
T Consensus 527 ~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 99999999999999998874 566788888888888889999999999998876 3445666777778888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 257 DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFG 336 (595)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 336 (595)
+...|..++....+... .+...|...+.......+++.|..+|.+.... .++..+|..-+..-.-.+..++|+++++
T Consensus 599 dv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 99999999999888633 36778888888889999999999999988764 5677788777777777889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 040027 337 SMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAAD 416 (595)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 416 (595)
+.++. ++.-...|-.+...+.+.++.+.|.+.|..-.+. ++.....|..+...-.+.|++-.|..+++...-.+ +.+
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 88876 2334457888888999999999999988876654 44456677777777778889999999999887764 667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 040027 417 TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQG 496 (595)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 496 (595)
...|...|++-.+.|..+.|..+..++++.- +.+...|..-|....+.++-......+++.. -|+++...+...
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~l 826 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKL 826 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHH
Confidence 8889999999999999999999999888754 6677788888888777777666666666554 377777788888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040027 497 LCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD-ASIVSIV 563 (595)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 563 (595)
+....++++|.+.|.+.++.+ +.+-.+|..+...+...|.-++-.+++.+.... .|. -..|.++
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 888899999999999999875 455678888888889999888888888888753 453 2444443
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=7.7e-16 Score=139.74 Aligned_cols=449 Identities=10% Similarity=0.071 Sum_probs=350.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...|...++--..++++..|+.+|++++... ..+...|...+.+-.+++.+..|..++++.... .+.-...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 66778888888888999999999999999876 568889999999999999999999999999886 2334456677777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
.--..|+...|.++|++.... .|+..+|...|..-.+-+.++.|..+|++.+-. .|+..+|......-.+
T Consensus 150 mEE~LgNi~gaRqiferW~~w--------~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--------EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 777899999999999999985 599999999999999999999999999998874 6899999999999999
Q ss_pred cCCHHHHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 040027 255 ANDWNEAKRLFIEMMDQ-GV-QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPN--ACTYNTLMDGFCLMGKINR 330 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 330 (595)
.|....+..+|...++. |- ..+...+.+....-..+..++.|.-+|.-.++. ++.+ ...|......--+.|+...
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhh
Confidence 99999999999988764 21 112334555555666788899999999998886 3333 4455555555556677544
Q ss_pred HHHH--------HHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH--------HHH
Q 040027 331 AEEL--------FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVV--TYNTLF--------LGL 392 (595)
Q Consensus 331 a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~--------~~~ 392 (595)
..+. ++.+++.+ +.|..+|-..++.-...|+.+...++|++++.. ++|-.. .|...+ -.-
T Consensus 299 IEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 299 IEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4433 34444443 678889999999999999999999999999986 444221 222222 112
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 040027 393 FEIHQVEHALKLFDEMQRDGVAADTRTYTTFID----GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (595)
....+.+.+.++|+..++. +|....|+..+-- .-.++.++..|.+++..++ |.-|...+|...+..-.+.+++
T Consensus 377 le~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhH
Confidence 3578999999999999985 5555555554433 3457889999999999988 4478899999999999999999
Q ss_pred HHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040027 469 KFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA-APDVITFDMLIHGFIRINEPSKVNELLH 546 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 546 (595)
+.+..++++.++. .| |-.+|...+..-...|+.+.|..+|.-+++... ......|...++.=...|.++.|..+|+
T Consensus 454 DRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 454 DRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 9999999999984 45 568898888888899999999999999988531 1123455666666678999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH
Q 040027 547 KMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 547 ~~~~~~~~p~~~~~~~l~~ 565 (595)
++++.. +...+|-.+..
T Consensus 532 rlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 532 RLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHhc--ccchHHHhHHH
Confidence 999753 44445555444
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.3e-17 Score=146.37 Aligned_cols=426 Identities=15% Similarity=0.107 Sum_probs=304.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPN----AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
+...+.+..++.+|++.|+-++..-+..+ ....+.+...+.+.|+++.|+..|+...+. .|+..+-..|+..+.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 55677888899999999999887632222 234555666688999999999999998876 678888778888888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcc--c----cCcHHHHHHH-----HHHHHHcC--CHhHHHHHHHHHhhCCCCCCHhH
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVV--C----KPNTVTYSTI-----IDGLCKEG--FVDKAKALFLQMKDENINPDVVT 244 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l-----~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~ 244 (595)
..|+.++..+.|.++....+..... . .|+....+.. +.-+-+.+ +.++++-.--++...-+.|+...
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 8999999999999998765432211 1 1222222222 22222221 22333322223332222233110
Q ss_pred -------------HHH--------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCChHHHHHHHH
Q 040027 245 -------------YNS--------LIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK--NRKMDEASRLLD 301 (595)
Q Consensus 245 -------------~~~--------ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 301 (595)
+.. -..-+.++|+++.|.++++-..+..-+.-...-+.+-..+.. -+++..|..+-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 111 123477899999999999888765333223333333333333 457888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 040027 302 LMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 381 (595)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (595)
..+..+ .-++.....-.+.....|++++|.+.|++.+..+. ........+.-.+...|+.++|++.|-++... +..+
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn 557 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNN 557 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhh
Confidence 776642 33444444445555678999999999999987531 12223334455677899999999999877653 2237
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 040027 382 VVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDG 461 (595)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (595)
...+..+...|....+...|++++-+.... ++.|+.+++.+...|-+.|+-..|.+.+-.--+ -++.+..+...|...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHH
Confidence 778888888999999999999999888876 788999999999999999999999988765443 347788999999999
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 040027 462 LCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGL-CNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINE 537 (595)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 537 (595)
|....-+++++.+|++..- +.|+..-|..++..| .+.|++.+|.++++....+ ++-|...+..|++.+...|-
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999999999876 789999999888555 5789999999999999876 57788999999998887773
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=4e-15 Score=145.88 Aligned_cols=362 Identities=15% Similarity=0.132 Sum_probs=277.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 040027 213 IIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRK 292 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (595)
........|++++|.+++.++++.. +.+...|.+|...|-..|+.+++...+-.+-.. .+.|...|..+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhccc
Confidence 3344455699999999999999875 447889999999999999999999988666544 34477889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhCCCHHHHHH
Q 040027 293 MDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDV----SYNILINGYCKNKEVEEALS 368 (595)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~ 368 (595)
+++|.-+|.++++... ++...+..-...|-+.|+...|...|.++.....+.+.. .....+..+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999853 355555666788999999999999999999875322222 23344666777888899999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------------------------CCCCHHHH
Q 040027 369 LYREMVSKG-IKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG---------------------------VAADTRTY 420 (595)
Q Consensus 369 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 420 (595)
.+......+ -..+...++.++..+.+..+++.+........... ..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 998887732 22355667888888999999999998887776511 12222221
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 040027 421 TTFIDGLC--KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLC 498 (595)
Q Consensus 421 ~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 498 (595)
. +.-++. +.+...+++..+-......+..+...|..+..+|...|++.+|+.+|..+......-+...|..++.+|.
T Consensus 382 r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 R-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred h-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1 111222 3344444444433333322445678899999999999999999999999998544446789999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhc
Q 040027 499 NDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK--------EKKVMPDASIVSIVVDLLVKN 570 (595)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~ 570 (595)
..|.+++|++.|+..+... +.+...-..|...+...|+.++|.+.++.+. ..+..|+..+.....+.|...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999974 5566777889999999999999999999953 335677888899999999999
Q ss_pred CcccccchH
Q 040027 571 EISLKSLPS 579 (595)
Q Consensus 571 g~~~~~i~~ 579 (595)
|+.|++|+.
T Consensus 540 gk~E~fi~t 548 (895)
T KOG2076|consen 540 GKREEFINT 548 (895)
T ss_pred hhHHHHHHH
Confidence 999966554
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.6e-13 Score=123.40 Aligned_cols=306 Identities=18% Similarity=0.277 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHH-HHHHHHHHhcCC----------
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKG--LHAESRIMEA-AALFTKLKAFGC---------- 162 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~---------- 162 (595)
+++=+.|+. ....|...++.-+|++|...|++.+...-..+++. |....++--| .+.|-.|...|-
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344444444 45678999999999999999888887776666543 3333332211 122333333221
Q ss_pred ---------CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 040027 163 ---------EPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQM 233 (595)
Q Consensus 163 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 233 (595)
+-...++..+|.++++--..+.|.+++++..... .+.+..++|.+|.+-.-..+ .++..+|
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~~~----K~Lv~EM 264 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYSVG----KKLVAEM 264 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhhcc----HHHHHHH
Confidence 1233444445555554444455555554444333 23344444444443222111 3444444
Q ss_pred hhCCCCCCHhHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHHC--
Q 040027 234 KDENINPDVVTYNSLIHGLCHANDWNE----AKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDE-ASRLLDLMVQR-- 306 (595)
Q Consensus 234 ~~~~~~~~~~~~~~ll~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~-- 306 (595)
....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++..+ +..+..++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 444444555555555555555554432 23344444444555555555554444444443322 22222222211
Q ss_pred --CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040027 307 --GVR---P-NACTYNTLMDGFCLMGKINRAEELFGSMESMG----CKHDD---VSYNILINGYCKNKEVEEALSLYREM 373 (595)
Q Consensus 307 --~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (595)
..+ | +...|...+..|.+..+.+.|.++..-+.... +.++. .-|..+....++....+.-...|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1 12223333444444444444444433322110 11111 12233333344444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 374 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
+-.-.-|+..+...++++....+.++-.-++|.+++..|
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 444344444444444454444455555555554444443
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.6e-14 Score=124.78 Aligned_cols=442 Identities=15% Similarity=0.136 Sum_probs=229.8
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHcCCCch--h-----HHhhCCCCCCHHHHHHHHHHHHh
Q 040027 38 REGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLAS--LAKNKHYD--T-----RLNATGLFPNLYTYNILINCFCK 108 (595)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~--~-----~~~~~~~~~~~~~~~~l~~~~~~ 108 (595)
...++.+|.++++.-+|++|.+.+.. .++..-..+++. |..+.+.. + .|...| ..+..+| +
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------K 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------c
Confidence 45668889999999999999998876 566554444432 22222211 1 111111 0111222 1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 040027 109 IGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNL 188 (595)
Q Consensus 109 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 188 (595)
.|... .-+|+. . +....++..+|.++++--..++|.++|++........+..+++.+|.+-.-... .++
T Consensus 192 ~G~vA--dL~~E~-~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 192 SGAVA--DLLFET-L----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred cccHH--HHHHhh-c----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 12221 122221 1 234455556666666666666666666665555555566666666554432222 455
Q ss_pred HHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHH----HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHH-HHH
Q 040027 189 FEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKA----KALFLQMKDENINPDVVTYNSLIHGLCHANDWNE-AKR 263 (595)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-A~~ 263 (595)
+.+|.+.. ..||..++|+++.+..+.|+++.| .+++.+|++.|+.|...+|..++..+.+.++..+ +..
T Consensus 261 v~EMisqk------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 261 VAEMISQK------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred HHHHHHhh------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 55555554 456666666666666666655433 3445555556666666666666665555555433 333
Q ss_pred HHHHHHHC--C--CC----CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCH
Q 040027 264 LFIEMMDQ--G--VQ----PSVVTFNVIMDELCKNRKMDEASRLLDLMVQRG----VRPN---ACTYNTLMDGFCLMGKI 328 (595)
Q Consensus 264 ~~~~~~~~--~--~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~ 328 (595)
++.++... | ++ .|...|...+..|....+.+-|.++...+.... +.|+ ...|..+..+.++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 33443322 1 11 133344555555555566555555544443211 1111 12334444455555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------------
Q 040027 329 NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH------------ 396 (595)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------ 396 (595)
+.....|+.++-.-.-|+..+...++++..-.+.++-.-+++.+++..|..........++..+++..
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 66666666665444445555555555555556666555555555555443322222222222222211
Q ss_pred --------CH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHHH
Q 040027 397 --------QV-EHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC----ELDIQAYNCLIDGLC 463 (595)
Q Consensus 397 --------~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 463 (595)
++ +.....-.++.+. .......+.++-.+.+.|+.++|.+++..+.+.+- .|...+...+++.-.
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 01 1111111223333 44556677777788899999999999998865432 233444446667777
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARD 508 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 508 (595)
..++...|...++-+...+...-...-+.+...|.-+..-.+|+.
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 788899999999988775433222233444455544433334433
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.4e-14 Score=130.74 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPN-AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
+-...+.|.+.|.+++|++.|..++.. .|+ +..|.....+|...|+++++++--.+.++.+. .-+.++..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHH
Confidence 344566788899999999999999987 566 77788888899999999999998888887642 23556666677778
Q ss_pred hcCChhHHHHH
Q 040027 178 RTGHTMIALNL 188 (595)
Q Consensus 178 ~~g~~~~A~~~ 188 (595)
+.|++++|+.-
T Consensus 195 ~lg~~~eal~D 205 (606)
T KOG0547|consen 195 QLGKFDEALFD 205 (606)
T ss_pred hhccHHHHHHh
Confidence 88888887653
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3e-14 Score=130.15 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=173.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 284 MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 284 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
...+.-.|+...+..-|+..+.....+ ...|..+..+|....+.++....|......+ +.++.+|..-..++.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 334556788888999999888875443 3337777888889999999999999988876 56777888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTL 443 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 443 (595)
++|..-|++.++..+. +...|..+.-+..+.++++++...|++.++. +|..+..|+...+.+..++++++|.+.|+..
T Consensus 411 e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999998887443 5566777777777888999999999998887 6778889999999999999999999999988
Q ss_pred HHcCCCc-----C--HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 444 RILKCEL-----D--IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 444 ~~~~~~~-----~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+...... + +.+...++..- -.+++..|..+++++.+ +.|- ...+..|...-.+.|+.++|+++|++...
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8653110 1 11112222222 23888889999988887 5554 46788888888888999999999988766
Q ss_pred c
Q 040027 516 N 516 (595)
Q Consensus 516 ~ 516 (595)
.
T Consensus 566 l 566 (606)
T KOG0547|consen 566 L 566 (606)
T ss_pred H
Confidence 3
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.6e-12 Score=114.40 Aligned_cols=256 Identities=13% Similarity=0.082 Sum_probs=115.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCH
Q 040027 251 GLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVR--PNACTYNTLMDGFCLMGKI 328 (595)
Q Consensus 251 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 328 (595)
++....+.++++.-.......|++-+...-+....+.....++++|+.+|+++.+.++- -|..+|..++.+-......
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33334444555555545544444444433344444444555555555555555554210 1233333332221111111
Q ss_pred HHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040027 329 NRAEELFGS-MESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDE 407 (595)
Q Consensus 329 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 407 (595)
..+.. ....+ +.-+.+...+.+-|.-.++.++|+..|++.++.++. ....|+.+..-|...++...|...|+.
T Consensus 316 ----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 ----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred ----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11111 00000 122234444444455555555555555555554322 333444444455555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH
Q 040027 408 MQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV 487 (595)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 487 (595)
+++-+ |.|-..|-.+.++|.-.+...-|+-.|+++.... |.|...|.+|+.+|.+.++.++|+..|......|- .+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cch
Confidence 55442 3444555555555555555555555555555443 44555555555555555555555555555544321 133
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
..+..++..|-+.++.++|...|++.++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555555555555555554443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-12 Score=117.85 Aligned_cols=365 Identities=11% Similarity=0.040 Sum_probs=263.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT 207 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
.-|...+-.....+.+.|....|++.|......- +-...+|..|..... + ++......... +.+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~~l-------~~~~ 225 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVVGL-------PSDM 225 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHhcC-------cccc
Confidence 4444444444455667889999999998887652 445566665554432 2 22222222211 1111
Q ss_pred --HHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHH
Q 040027 208 --VTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ--PSVVTFNVI 283 (595)
Q Consensus 208 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l 283 (595)
..-.-+..++....+.+++..-.+.....|++.+...-+....+.....|++.|+.+|+++.+...- .|..+|..+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 1112244566666788888888888888888766666666667788899999999999999987311 155667666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 284 MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 284 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
+-. +..+.. +.++..-...-.+.-+.|...+++-|.-.++.++|...|++.++.+ +....+|+.+..-|....+.
T Consensus 306 LYv--~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYV--KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHH--HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhccc
Confidence 543 322221 1112111111123345677788899999999999999999999986 44566899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTL 443 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 443 (595)
..|++.|+.+++-.+. |...|..+.++|.-.+.+.=|+-.|++.... .|.|+..|.++.++|.+.++.++|+..|+++
T Consensus 381 ~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999997555 8899999999999999999999999999987 3789999999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc----CC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 444 RILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH----GV-LVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
...+ ..+...+..|++.|-+.++..+|...|.+.++ .| +.|. .....-|...+.+.+++++|..+......
T Consensus 459 i~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 459 ILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred Hhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9987 66779999999999999999999999988766 22 2221 22223355666677888877665555443
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.71 E-value=1.9e-11 Score=115.81 Aligned_cols=524 Identities=12% Similarity=0.097 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC---chh-------HHhhCCC---CCCHHHHHHHHHHHHhcCChhH
Q 040027 48 NEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKH---YDT-------RLNATGL---FPNLYTYNILINCFCKIGRVSL 114 (595)
Q Consensus 48 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~-------~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 114 (595)
+.-.-+|+++++.-|. +--.|..-+..=...-+ ... .....++ .--+..|...++.+..+|+...
T Consensus 43 k~~~~lYERal~~lp~--sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~ 120 (835)
T KOG2047|consen 43 KQRNLLYERALKELPG--SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITR 120 (835)
T ss_pred HHHHHHHHHHHHHCCC--chHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHH
Confidence 4456788999999887 77788777643222111 111 1111111 1356788889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040027 115 GFIAFGRILRS-CFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMA 193 (595)
Q Consensus 115 A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (595)
.+..|++++.. .+.....+|...+......+-++-++.+|++.++. ++......+..++..+++++|.+.+..++
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 99999999876 33445668999999888999999999999999976 45557888999999999999999999988
Q ss_pred hcCCCCCccccCcHHHHHHHHHHHHHcCCHh---HHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 194 NGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD---KAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
..+.-.+.-.+.+...|..+-....+.-+.- ...++++.+..+-..--...|.+|...|.+.|.+++|.++|++.+.
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6553333223556667777777666654432 3344455544431111245689999999999999999999998877
Q ss_pred CCCCCCHhhHHHHHHHHHh----------------cC------ChHHHHHHHHHHHHCCC-----------CCCHHHHHH
Q 040027 271 QGVQPSVVTFNVIMDELCK----------------NR------KMDEASRLLDLMVQRGV-----------RPNACTYNT 317 (595)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~----------------~g------~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ 317 (595)
.- ....-|..+..+|.. .+ +++-....|+.+..... +.+...|..
T Consensus 277 ~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 277 TV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred hh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 52 122223333333321 11 12233344444443211 122333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 040027 318 LMDGFCLMGKINRAEELFGSMESMGCKH------DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT---VVTYNTL 388 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l 388 (595)
-.. ...|+..+-...|.++.+. +.| -...|..+...|-..|+.+.|..+|++..+-..+-- ..+|...
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW 431 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 222 2356677777788877654 122 224688889999999999999999999887543311 2345555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRDGVAA-----------------DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELD 451 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 451 (595)
...-.++.+++.|+++++........| +..+|...+..--..|-++....+|++++...+ .+
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aT 510 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-AT 510 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CC
Confidence 566677888999999888776431111 234556666666678899999999999998774 35
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCH-HHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV-VTYNIMIQGLCN---DGQMDKARDLFLDMEENAAAPDV-ITFD 526 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 526 (595)
+.+.......+-...-++++.+++++-+..--.|++ ..|+..+.-+.+ ...++.|..+|+++++ |-+|.. .++.
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiy 589 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 666666666677778899999999987775344664 678887766653 2378999999999999 445543 2222
Q ss_pred HH-HHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHh-c------CcccccchHHHHhhh
Q 040027 527 ML-IHGFIRINEPSKVNELLHKMKEKKVMPD--ASIVSIVVDLLVK-N------EISLKSLPSFLVQER 585 (595)
Q Consensus 527 ~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-~------g~~~~~i~~~~~~~~ 585 (595)
.+ ...=-+-|....|..+++++... +++. -..|+..+.--.. - +-++++|+++|....
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 22 22223458888999999998753 3432 2444444432211 2 234478887775543
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=9.8e-17 Score=148.95 Aligned_cols=262 Identities=15% Similarity=0.112 Sum_probs=94.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 040027 282 VIMDELCKNRKMDEASRLLDLMVQRG-VRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN 360 (595)
Q Consensus 282 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (595)
.+...+...|++++|+++++...... .+.+...+..+.......++++.|+..++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34556667777777777775544332 23344445555556666777777777777776654 2244455555555 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 361 KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG-VAADTRTYTTFIDGLCKNGYIIEAVEL 439 (595)
Q Consensus 361 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 439 (595)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776655542 345556666667777777777777777766432 345666677777777777888888888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 040027 440 FRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAA 519 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 519 (595)
++++++.. |.+......++..+...|+.+++.+++....... +.|+..|..+..+|...|+.++|+..|++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88777765 4567777777777777777777777777666531 3345566777777778888888888888877754 5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 520 PDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.|+.....++.++...|+.++|.++.+++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5677777777788888888888777776653
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.8e-13 Score=130.66 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=109.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH
Q 040027 320 DGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV-------VTYNTLFLGL 392 (595)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 392 (595)
..+...|+++.|...++++.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .++..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444332 223334444444444444444444444444443222111 1112222222
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH
Q 040027 393 FEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAW 472 (595)
Q Consensus 393 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (595)
....+.+...++|+.+.+. .+.++.....+...+...|+.++|..++++..+. +++..... +.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHH
Confidence 2233344444444444332 2345555556666666666666666666666552 33432221 22223446666666
Q ss_pred HHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 473 ELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 473 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+..+...+. .| |+..+..+...+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 315 ~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666553 23 3445556666666666666666666666663 46666666666666666666666666666543
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-12 Score=121.79 Aligned_cols=462 Identities=11% Similarity=0.021 Sum_probs=320.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+..-+..+.+-+..+.++..|..+-+++...+ .|+.....+++++.-.|++.+|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 55566677777777888888888888887774 45555556777788888888887776654332 346777777778
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC-------CccccCc-----------HHHHHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEI-------GVVCKPN-----------TVTYSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
.+.+..++++|..++.......... +....++ ...+-.-...|......++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 8888888888888877221100000 0000011 111111123455566777888888777654
Q ss_pred CCCCCHhHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHH-----------------CCCCCCHhhHHH
Q 040027 237 NINPDVVTYNSLIHGLCH-----------------ANDWNEAKRLFIEMMD-----------------QGVQPSVVTFNV 282 (595)
Q Consensus 237 ~~~~~~~~~~~ll~~~~~-----------------~~~~~~A~~~~~~~~~-----------------~~~~~~~~~~~~ 282 (595)
.+. ....+..|+....- .+...+-++.+-++.. .+...+......
T Consensus 171 D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred chh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 222 22222222222111 1111111222111110 011223344445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 040027 283 IMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 362 (595)
Q Consensus 283 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (595)
...-+...+++.+..++.+.+.+.. ++....+..-+.++...|+..+-..+=.++++.- |..+.+|..+.--|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 5666778899999999999998873 4455566666778888898888777777777763 6667799999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 363 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRT 442 (595)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 442 (595)
..+|.+.|.+....+.. -...|..+..++.-.+..++|...|..+.+. ++....-+.-+.--|.+.++++.|.+.|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998776433 3467888999999999999999999888875 222333333445568889999999999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCC---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 443 LRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG--VLV---P-NVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+.... |.|+...+.+.-.....+.+.+|...|+..+.. ... + -..+++.|+.+|.+.+.+++|+..+++.+..
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99766 778899999988888899999999999987731 011 1 2356889999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 517 AAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
. +.+..++..++-.|...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 4 77899999999999999999999999999996 67887666666554444
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4e-13 Score=130.55 Aligned_cols=283 Identities=13% Similarity=0.067 Sum_probs=156.2
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH--HHHHHHHHHc
Q 040027 144 ESRIMEAAALFTKLKAFGCEPNVITYNTL-INGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY--STIIDGLCKE 220 (595)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~ 220 (595)
.|+++.|.+.+....+.. +++..+..+ ..+..+.|+++.|...++++.+.. |+.... ......+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHC
Confidence 466666665555544431 122222222 233355666666666666665532 232211 1224555666
Q ss_pred CCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCCh
Q 040027 221 GFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV-------VTFNVIMDELCKNRKM 293 (595)
Q Consensus 221 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~ 293 (595)
|++++|.+.++++.+.. +-+......+...|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 167 g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 167 NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 66666666666665553 224555555666666666666666666666655433211 1222233333333444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040027 294 DEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 373 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (595)
+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++.+++++..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 5555555554332 2335556666666777777777777777666653 3443221 223333446677777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 374 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRI 445 (595)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 445 (595)
.+..+. |...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 665333 5555666666777777777777777777664 56666666677777777777777777776654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=4.8e-13 Score=130.76 Aligned_cols=290 Identities=11% Similarity=0.062 Sum_probs=170.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040027 253 CHANDWNEAKRLFIEMMDQGVQPS-VVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRA 331 (595)
Q Consensus 253 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 331 (595)
...|+++.|.+.+.+..+.. |+ ...+-....++...|+++.+.+++.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 34566666666666655532 22 2233344555666677777777776665542222222333345666667777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHH
Q 040027 332 EELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYN----TLFLGLFEIHQVEHALKLFDE 407 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 407 (595)
...++.+.+.. |.+...+..+...+.+.|++++|.+.+..+.+.++. +...+. .........+..+.....+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777766654 445556666667777777777777777777666443 222221 111111222222222333333
Q ss_pred HHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHhcccCC
Q 040027 408 MQRDG---VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQA--YNCLIDGLCKSGRLKFAWELFCSLPHGV 482 (595)
Q Consensus 408 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 482 (595)
+.+.. .+.+...+..+...+...|+.++|..++++..+.. +.+... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 33321 12366777777778888888888888888887754 222211 111111223346777788888777763
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 483 LVPN-V--VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 483 ~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
.|+ + ....++.+.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++..
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444 3 45567788888888888888888853333346777777788888888888888888888765
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=6.8e-13 Score=129.72 Aligned_cols=295 Identities=9% Similarity=-0.015 Sum_probs=138.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCC
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAND 257 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 257 (595)
..|+++.|.+.+.+..+.. +.....+-....++...|+.+.|.+.+.+..+....+...........+...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 4566666666666555432 111223333445555566666666666665543211111223333555566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHH
Q 040027 258 WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGF---CLMGKINRAEEL 334 (595)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~ 334 (595)
++.|...++.+.+.. +-+...+..+...+...|+++++.+.+..+.+.+..++.........++ ...+..+...+.
T Consensus 169 ~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 169 LHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 666666666666543 2244455566666666666666666666666654332211111111111 111111212222
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 335 FGSMESMGC---KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 335 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
+..+.+... +.+...+..++..+...|+.++|.+++++..+..+......+.
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~------------------------- 302 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP------------------------- 302 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-------------------------
Confidence 222222210 1244444445555555555555555555554432211100000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH
Q 040027 412 GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDI--QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVT 489 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 489 (595)
.+ ........++.+.+.+.+++..+.. +.|+ ....+++..+.+.|++++|.+.|+........|+...
T Consensus 303 -------~l--~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 303 -------LC--LPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred -------HH--HHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 00 0011122344555555565555543 3344 4555666666666666666666663222214566655
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+..+...+.+.|+.++|.+++++...
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666543
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=5.1e-16 Score=144.16 Aligned_cols=261 Identities=16% Similarity=0.135 Sum_probs=73.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSC-FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (595)
.+...+.+.|++++|..++++..... .+.+...|..+.......++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44555666666666666665444332 2333444444444555566666666666666655322 34444445444 456
Q ss_pred CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC-CCCCHhHHHHHHHHHHhcCCH
Q 040027 180 GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN-INPDVVTYNSLIHGLCHANDW 258 (595)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~ 258 (595)
+++++|.++++...+.. +++..+...+..+...++++++.++++.+.... .+.+...|..+...+.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccc--------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 66666666665554332 334445555555666666666666666654321 223455555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 259 NEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
++|++.|++.++.. +.|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|...+++.
T Consensus 163 ~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 66666666665542 1134455555556666666666555555554442 233444555556666666666666666665
Q ss_pred HhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 040027 339 ESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMV 374 (595)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (595)
.+.. +.|+.....+..++...|+.++|..+.+++.
T Consensus 241 ~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccc-ccccccccccccccccccccccccccccccc
Confidence 5542 3355555555666666666666665555443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=2.8e-14 Score=135.76 Aligned_cols=282 Identities=13% Similarity=0.060 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 257 DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGV--RPNACTYNTLMDGFCLMGKINRAEEL 334 (595)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 334 (595)
+..+|+..|.++..+ +.-.......+.++|...+++++|.++|+.+.+... ..+..+|...+..+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345555555553332 221223344455555555555555555555544310 1133334333332211 111222
Q ss_pred HHH-HHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 040027 335 FGS-MESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGV 413 (595)
Q Consensus 335 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 413 (595)
+.+ +.+. -+..+.+|..+..+|.-+++.+.|++.|++.++.+.. ...+|+.+..-+.....+|.|...|+..+..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 211 1111 1334445555555555555555555555555543221 33444444444444445555555555444321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHH
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNI 492 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 492 (595)
+-+-..|..+...|.+.++++.|.-.|+++.+.+ |.+......++..+.+.|+.++|+.+++++... .| |+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHH
Confidence 1122233344444555555555555555555443 334444444444455555555555555554442 22 2333333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 493 MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+..+...+++++|+..++++.+. ++.+...|..++..|.+.|+.+.|+.-|--|.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 334444445555555555554443 222334444444555555555555544444443
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=1.9e-12 Score=116.05 Aligned_cols=287 Identities=12% Similarity=0.108 Sum_probs=201.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 255 ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEEL 334 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 334 (595)
.|+|..|.+...+-.+.+.. ....|..-.++.-..|+.+.+-+++.++.+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665544 23445556666777777777777777777654445555666666777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 040027 335 FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV-------VTYNTLFLGLFEIHQVEHALKLFDE 407 (595)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 407 (595)
+.++.+.+ +.++........+|.+.|++.+...++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 456667777777888888888888888887777655443 2455555555555555555566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH
Q 040027 408 MQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV 487 (595)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 487 (595)
..+. ...++..-..++.-+.+.|+.++|.++.++..+.+.++.. ...-.+.+-++.+.-++..++.... .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 6554 3556677777888888888888888888888887655551 1222345667777766666666553 23345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
..+.+|...|.+++.|.+|...|+..++. .|+..+|..+.+++.+.|+..+|.++.++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77788888888888999998888887774 688888888888888889888888888887743
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.9e-12 Score=119.73 Aligned_cols=474 Identities=12% Similarity=0.046 Sum_probs=306.0
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh---HHhhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 040027 40 GDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT---RLNATG-LFPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 40 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
..+.+.++..|.-+-+++.... . +|..-..+..++.-.|.+.. .+.... ...|..+...+...+.+..++++|
T Consensus 25 ~~l~q~~y~~a~f~adkV~~l~-~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~a 101 (611)
T KOG1173|consen 25 DALMQHRYKTALFWADKVAGLT-N--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQA 101 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHhcc-C--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888777 3 44444456777777777666 222222 235777777788888888899999
Q ss_pred HHHHHHHHhC--CC-----------CCCHHH-----------HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHH
Q 040027 116 FIAFGRILRS--CF-----------TPNAAT-----------FNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNT 171 (595)
Q Consensus 116 ~~~~~~~~~~--~~-----------~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (595)
..++.+.... ++ .+|..- +-.-...|....++++|...|.+.....+. ..+.+..
T Consensus 102 l~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~ 180 (611)
T KOG1173|consen 102 LLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEK 180 (611)
T ss_pred HHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHH
Confidence 8888833110 00 000000 000012233445666677677666654221 1222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHG 251 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 251 (595)
++....- .+.+.++.+...+-. .....+......+.....-...-+.....-++..-.+..-+......-..-
T Consensus 181 lvs~~ml-----t~~Ee~~ll~~l~~a--~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 181 LVSAHML-----TAQEEFELLESLDLA--MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred HHHHHhc-----chhHHHHHHhcccHH--hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 2222211 121222222221100 000111111111111110000000000000000011223345555566677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040027 252 LCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRA 331 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 331 (595)
+...+++.+..++.+.+.+. .++....+..-+.++.+.|+..+-..+=.++++. .+..+.+|..++--|...|+.++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 88899999999999999886 3456666777777899999998888888888886 455778899999889899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 332 EELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
.+.|.+....+ +.=...|-.+...|.-.+..++|+..|..+-+.-.. ....+..+..-|.+.++.+.|.+.|.+....
T Consensus 332 Rry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 332 RRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999987664 223457889999999999999999999888765222 3333444556688899999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC
Q 040027 412 GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL----K--CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP 485 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 485 (595)
.|.|+...+.+.-.....+.+.+|..+|+..+.. . ......+++.|+.+|.+.+.+++|+..+++.+.. .+.
T Consensus 410 -~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k 487 (611)
T KOG1173|consen 410 -APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPK 487 (611)
T ss_pred -CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCC
Confidence 4677888888887777889999999999987721 1 0124567899999999999999999999998874 244
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGF 532 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (595)
+..++.+++-.|...|+++.|++.|.+.+.. .|+..+...++..+
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 7889999999999999999999999999884 67765555555433
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.6e-12 Score=110.81 Aligned_cols=422 Identities=14% Similarity=0.090 Sum_probs=223.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 105 CFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
-+....++..|+.+++-....+-.....+-..+..++...|++++|...|..+.... .++...+..|.-.+.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344455666666666655544322222233334445555666666666666655532 4455555555555555666666
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
|..+-.+. +.++..-..+.....+.++-++-..+.+.+.. +...-.+|.......-.+++|+++
T Consensus 110 A~~~~~ka-----------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 110 AKSIAEKA-----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHhhC-----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 65554443 22333334444445555555554444444432 223333444445555556666666
Q ss_pred HHHHHHCCCCCCHhhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C---------------
Q 040027 265 FIEMMDQGVQPSVVTFNVIM-DELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM--G--------------- 326 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--------------- 326 (595)
|...+.. .|.-...+..+ -+|.+..-++-+.++++--++. ++.++...+..+....+. |
T Consensus 174 YkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 6665543 12333333322 2444555555555555544443 222222222222211111 1
Q ss_pred ------------------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 327 ------------------KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTL 388 (595)
Q Consensus 327 ------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 388 (595)
.-+.|.+++-.+.+. -+.+-..++--|.+.+++.+|..+.+++.-. ++.-|..-
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilK 322 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILK 322 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHH
Confidence 123333333333322 1233445566678888888888887765321 33333322
Q ss_pred HHHHHccCC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 040027 389 FLGLFEIHQ-------VEHALKLFDEMQRDGVAADT-RTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLID 460 (595)
Q Consensus 389 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 460 (595)
.-.+...|+ ..-|.+.|...-..+..-|. ..-..+..++.-...+++.+-.++.+..--.. |...-..+.+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQ 401 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQ 401 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHH
Confidence 233344443 23344444333333322222 12234445555566788888888777764423 3333345788
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCh
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVPNVVTYN-IMIQGLCNDGQMDKARDLFLDMEENAAAPDV-ITFDMLIHGFIRINEP 538 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 538 (595)
+++..|++.+|+++|-++....++ |..+|. .|.++|.+++.++-|.+++-++-. +.+. .....+...|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888764343 445554 556888899999988776655432 2222 3345566788889988
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH
Q 040027 539 SKVNELLHKMKEKKVMPDASIVS 561 (595)
Q Consensus 539 ~~A~~~~~~~~~~~~~p~~~~~~ 561 (595)
--|.+.|+.+.. ..|+++-|.
T Consensus 478 yyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHhhhHHHc--cCCCccccC
Confidence 888888888775 457777765
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.1e-13 Score=131.82 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=161.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 040027 292 KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGC--KHDDVSYNILINGYCKNKEVEEALSL 369 (595)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (595)
+..+|...|..+... +.-+..+...++++|...+++++|+.+|+.+.+... -.+...|...+..+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345666666664443 333445555666677777777777777776655420 1133344444433321 112222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 040027 370 Y-REMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC 448 (595)
Q Consensus 370 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 448 (595)
+ +.++... +-.+.+|..+...|.-.++++.|++.|++.++.+ +-...+|+.+..-+....++|+|...|+.++...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2333322 2255667777777777777777777777766652 2255666666666666667777777777666433
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDM 527 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 527 (595)
+.+-.+|-.++..|.++++++.|+-.|+++.+ +.|. ......+...+-+.|+.++|+++++++...+ +.|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 33344455566666777777777777777666 4443 3444555566666677777777777776654 334444444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccccchHHHHh
Q 040027 528 LIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISLKSLPSFLVQ 583 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~~i~~~~~~ 583 (595)
-+..+...+++++|+..++++++. .| +..++..++.+|.+.|+.+.++.++...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 555666667777777777777663 34 4566666677777777776555555433
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=1.2e-09 Score=103.92 Aligned_cols=509 Identities=12% Similarity=0.096 Sum_probs=315.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh-------HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 47 PNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT-------RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
++..-..|++++..-.. -|..|..-+..+.++|+... .+...-+......|...+......|-++-+..++
T Consensus 84 ~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 33444445555542222 45688888888888888776 3444445556778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC------CCCCHhhHHHHHHHHHhcC---ChhHHHHHHH
Q 040027 120 GRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG------CEPNVITYNTLINGLCRTG---HTMIALNLFE 190 (595)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 190 (595)
++.++. ++..-...+..+...++.++|.+.+..+.... .+.+-..|..+....++.- ..-....+++
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 999976 45557888899999999999999998876531 1224455666666555533 2233445555
Q ss_pred HHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhc---------------
Q 040027 191 EMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHA--------------- 255 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------- 255 (595)
.+...- ...-...|+.|...|.+.|.+++|..+|++....- .+..-|+.+.+.|..-
T Consensus 238 ~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 238 GGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred hhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 555543 11125679999999999999999999999987641 2333344444443321
Q ss_pred -C------CHHHHHHHHHHHHHCCC-----------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------
Q 040027 256 -N------DWNEAKRLFIEMMDQGV-----------QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPN------ 311 (595)
Q Consensus 256 -~------~~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------ 311 (595)
+ +++-.+..|+.+...+. +.+...|..-+. ...|+..+....|.++++. +.|.
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~ 386 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSP 386 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCCh
Confidence 1 23333444555444321 112333433332 3456777888888888775 3322
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--------
Q 040027 312 ACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHD---DVSYNILINGYCKNKEVEEALSLYREMVSKGIKP-------- 380 (595)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 380 (595)
...|..+...|-..|+++.|..+|++..+...+.- ..+|.....+-.+..+++.|+++.++.....-.|
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 34677888999999999999999999887643322 2356666677778889999999988876431111
Q ss_pred ---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 040027 381 ---------TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELD 451 (595)
Q Consensus 381 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 451 (595)
+...|...+......|-++....+|+.+++..+. ++.+.......+-.+.-++++.++|++-+..--.|+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 2334555566666678888888888888876432 333333333334455567777777776665433344
Q ss_pred -HHHHHHHHHHHHhc---CChHHHHHHHHhcccCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHHc---------
Q 040027 452 -IQAYNCLIDGLCKS---GRLKFAWELFCSLPHGVLVPNVVTYNIMI--QGLCNDGQMDKARDLFLDMEEN--------- 516 (595)
Q Consensus 452 -~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~--------- 516 (595)
...|+..+.-+.+. ..++.|..+|+++++ +.+|...-+-.|+ ..--..|-...|+.+++++...
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34566655555432 346777777777776 3444322111111 1111335555555555543221
Q ss_pred ------------CCCCCHHHHHHHH----------------HHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 040027 517 ------------AAAPDVITFDMLI----------------HGFIRINEPSKVNELLHKMKEK-KVMPDASIVSIVVDLL 567 (595)
Q Consensus 517 ------------~~~~~~~~~~~l~----------------~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 567 (595)
|++..-..|...| ..=.+.|..+.|..++.-..+. .-+.+...|..+-..=
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FE 704 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFE 704 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHH
Confidence 2222222222222 2224678888888888877764 2233678899998888
Q ss_pred HhcCccc
Q 040027 568 VKNEISL 574 (595)
Q Consensus 568 ~~~g~~~ 574 (595)
.+.|+-+
T Consensus 705 vrHGned 711 (835)
T KOG2047|consen 705 VRHGNED 711 (835)
T ss_pred HhcCCHH
Confidence 8999854
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=2.5e-12 Score=111.71 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=166.2
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCh
Q 040027 220 EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV------VTFNVIMDELCKNRKM 293 (595)
Q Consensus 220 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 293 (595)
.++.++|.++|-+|.+.. +.+..+..+|.+.|.+.|..+.|+++.+.+.+. ||. .....+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888887753 235556667778888888888888888877765 332 2233455566667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHH
Q 040027 294 DEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDD----VSYNILINGYCKNKEVEEALSL 369 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 369 (595)
+.|.++|..+.+.+ ..-......++..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 77777777776643 223445666677777777777777777766665433221 1344445555556666666766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 040027 370 YREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCE 449 (595)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 449 (595)
+.+..+.+.+ .+..-..+.......|+++.|.+.|+.+.+.+..--+.+...+..+|.+.|+.++....+.++.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 6666665433 3344444555666666666666666666666444444556666666666666666666666666543
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN---DGQMDKARDLFLDMEE 515 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 515 (595)
+....-..+...-....-.+.|...+.+-+. -.|+...+..++..... .|...+-...++.|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 2222333333333333334444444444333 25666666666554442 2334444445555543
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=3.4e-12 Score=110.94 Aligned_cols=291 Identities=15% Similarity=0.136 Sum_probs=186.7
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCH
Q 040027 144 ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFV 223 (595)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 223 (595)
..+.++|+++|-+|.+.. +.+..+...|.+.|-+.|..+.|+.+-+.+..+.+ .+......+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd---lT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD---LTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHhhhh
Confidence 466788888888888753 22455667788888888888888888888776531 00111233455667778888888
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHH
Q 040027 224 DKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV----VTFNVIMDELCKNRKMDEASRL 299 (595)
Q Consensus 224 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 299 (595)
|.|+++|..+.+.+. --......|+..|-...+|++|+++-.++.+.+-++.. ..|.-+...+....+++.|...
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888888877532 24556777888888888888888888877776544322 2345555556666777777888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 040027 300 LDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIK 379 (595)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 379 (595)
+.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+...-+.+...|..+|.+.|+.++....+..+.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~- 280 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT- 280 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 7777776422 44445556777777888888888888877765444445667777788888888888877777776532
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 040027 380 PTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK---NGYIIEAVELFRTLR 444 (595)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 444 (595)
....-..+........-.+.|...+.+-++. .|+...+..++..... .|...+-..+++.|.
T Consensus 281 -g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 -GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333333444334444445555554444443 5677777777665443 233444444555544
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=8.8e-12 Score=111.89 Aligned_cols=287 Identities=11% Similarity=0.070 Sum_probs=156.9
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCH
Q 040027 144 ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFV 223 (595)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 223 (595)
.|++.+|.++..+..+.+-. ....|..-+++-.+.|+.+.+-.++.++.+.. -.++....-.........|++
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHhCCCc
Confidence 46666666666665554322 22333334444555666666666666665542 123344444455555566666
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCChHHH
Q 040027 224 DKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV-------VTFNVIMDELCKNRKMDEA 296 (595)
Q Consensus 224 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a 296 (595)
+.|..-.+.+.+.+ +-++........+|.+.|++.+...++.++.+.+.-.+. .+|..++.-....+..+.-
T Consensus 170 ~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 170 PAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 66666666555543 224455555556666666666666666666665543332 2344455555555555554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 040027 297 SRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 376 (595)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (595)
...++..... .+.++.....++.-+.++|+.++|.++..+..+.+..+. -.....+.+.++...-++..++..+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 4555554443 333455555566666666666666666666666543333 11122234455555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 040027 377 GIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL 446 (595)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 446 (595)
.+. ++..+..+...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++....
T Consensus 324 h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 222 4455666666666666666666666665554 566666666666666677777666666665543
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.6e-10 Score=101.93 Aligned_cols=430 Identities=12% Similarity=0.139 Sum_probs=239.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 181 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (595)
+..++...|++++|..++..+.+.. .++...+..+..++.-.|.+.+|..+-.+..+ ++-....++..-.+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 4555666677777777776666543 55566666666666666666666665544322 22222333344444454
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHH-HHHHHHhcCCHHH
Q 040027 182 TMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNS-LIHGLCHANDWNE 260 (595)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~ 260 (595)
-++-...-+.+.. ...--..|.+.....-.+++|++++.++...+ |+....+. +.-+|.+..-++-
T Consensus 137 Ek~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 137 EKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhh
Confidence 4444333333221 11222233333333334566666666655532 23333332 2234455555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----------------------------------CChHHHHHHHHHHHH
Q 040027 261 AKRLFIEMMDQGVQPSVVTFNVIMDELCKN-----------------------------------RKMDEASRLLDLMVQ 305 (595)
Q Consensus 261 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------------------g~~~~a~~~~~~~~~ 305 (595)
+.++++-.+++ ++.+....+..+....+. ++-+.|++++--+.+
T Consensus 204 sqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 204 SQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 55555555443 222222333222221111 122333333333332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCC
Q 040027 306 RGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE-------VEEALSLYREMVSKGI 378 (595)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~ 378 (595)
. . +..-..++--|.+.++.++|..+.+++. |.++.-|-.-.-.+...|+ ..-|.+.|+-.-+.+.
T Consensus 283 ~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 H--I--PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred h--C--hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 1 1 1223345556788999999998887764 3344444333333333333 4455555554444433
Q ss_pred CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 040027 379 KPTV-VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNC 457 (595)
Q Consensus 379 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 457 (595)
.-|. .....+...+.-..++++++..++.+... +..|......+.++++..|++.+|.++|-++....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 2222 22344555566667889999888888876 344555555678899999999999999988875544434444456
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 040027 458 LIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNI-MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN 536 (595)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 536 (595)
+.++|.+.+.++.|+.++-++.. +.+..+... +..-|.+.+.+--|.+.|..+... .|++..|. |
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------G 499 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------G 499 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------C
Confidence 77889999999999988776653 223344433 346778889998899999888775 56766664 3
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCccc
Q 040027 537 EPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 537 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 574 (595)
+-.....+|..+....-.| .....+-++..+...+..+
T Consensus 500 KRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq 538 (557)
T KOG3785|consen 500 KRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQ 538 (557)
T ss_pred ccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCch
Confidence 3344455666666443334 3466777777777777665
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=5.1e-10 Score=106.70 Aligned_cols=451 Identities=14% Similarity=0.106 Sum_probs=298.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--HHhhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--RLNATGL---FPNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
++|...++..+.+++..|. ++.+.......+...|+-.+ ..+..|+ ..+.+.|..++-.+....++++|+..|
T Consensus 21 kQYkkgLK~~~~iL~k~~e--HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPE--HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCc--cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 6788888999999999998 55555555555666777666 4444444 357888998888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 040027 120 GRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEI 199 (595)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 199 (595)
+.++..+ +.|...|.-+.-.-.+.|+++........+.+.. +.....|..++.++.-.|+...|..+++...+...
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-- 174 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-- 174 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 9999986 5578888888777788899998888888887763 33566788888999999999999999999887652
Q ss_pred CccccCcHHHHHHH------HHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040027 200 GVVCKPNTVTYSTI------IDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV 273 (595)
Q Consensus 200 ~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 273 (595)
..++...+... .......|..++|.+.+...... +......-..-...+.+.++.++|..+|..++..
T Consensus 175 ---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 175 ---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 13444444332 24456678888888877665443 1112223334557788999999999999999986
Q ss_pred CCCHhhHHHH-HHHHHhcCChHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 040027 274 QPSVVTFNVI-MDELCKNRKMDEAS-RLLDLMVQRGVRPNACTYNTL-MDGFCLMGKINRAEELFGSMESMGCKHDDVSY 350 (595)
Q Consensus 274 ~~~~~~~~~l-~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 350 (595)
.||...|... ..++.+-.+..++. .+|....+. ++ .......+ +.......-.+..-.++....+.|+++ ++
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 3565555544 44444333333444 666666553 11 11111111 111111222334445666667777544 34
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 040027 351 NILINGYCKNKEVEEALSLYREMVS----KG----------IKPTVVTY--NTLFLGLFEIHQVEHALKLFDEMQRDGVA 414 (595)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 414 (595)
..+...|-.....+-..++...+.. .| -+|+...| ..+.+.+-..|+++.|...++..+.+ .
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T 401 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T 401 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C
Confidence 4444444332222211111111111 11 14455444 45667788999999999999999876 4
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC--CC----H
Q 040027 415 AD-TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLV--PN----V 487 (595)
Q Consensus 415 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~ 487 (595)
|+ ...|..-.+.+...|++++|..++++..+.+ .+|..+-..-+.-..++.+.++|.++.....+.|.. -| .
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mq 480 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQ 480 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhh
Confidence 44 3556666678889999999999999999887 666666557777788999999999999988876531 11 1
Q ss_pred HHHHHH--HHHHHhcCChhHHHHHHHHHHH
Q 040027 488 VTYNIM--IQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 488 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
-+|..+ +.+|.+.|++..|++-|..+..
T Consensus 481 cmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 481 CMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 133332 3567888888888877666544
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=5.7e-10 Score=108.56 Aligned_cols=434 Identities=13% Similarity=0.040 Sum_probs=284.7
Q ss_pred HHhcCChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040027 106 FCKIGRVSLGFIAF----GRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 181 (595)
Q Consensus 106 ~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (595)
+.-..+.+++.... .++....+..|+..|..+.-++...|+++.+.+.|++....-+. ..+.|..+...|...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhcc
Confidence 34444555554333 33333345678889999999999999999999999998765333 67789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH-cCCHhHHHHHHHHHhhC--CC--CCCHhHHHHHHHHHHhc-
Q 040027 182 TMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK-EGFVDKAKALFLQMKDE--NI--NPDVVTYNSLIHGLCHA- 255 (595)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~- 255 (595)
...|..+++....... .++++..+...-..|.. .+..++++++..++... +. ......|..+.-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~-----~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSE-----QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred chHHHHHHHhhccccc-----CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 9999999988776541 13445555444454544 46777777777776652 11 11344455555444432
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 256 ----------NDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM 325 (595)
Q Consensus 256 ----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (595)
....++++.+++..+.+.. |+.....+.--|...++++.|.+...+..+.+...+...|..+...+...
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~ 526 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ 526 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 1245677888888776432 33333444456788899999999999999986677888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHH------HHHHHHHHHccCC
Q 040027 326 GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK--GIKPTVVT------YNTLFLGLFEIHQ 397 (595)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~------~~~l~~~~~~~~~ 397 (595)
+++.+|+.+.+.....- +.|-.....-+..-...++.++++.....+... ...+-..+ ...-.......++
T Consensus 527 kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred hhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence 99999999998876541 122222222233334466666666655544321 00000000 0000000000111
Q ss_pred HHHHHHHHHHH-----------------HHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 040027 398 VEHALKLFDEM-----------------QRDGVA--AD------TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDI 452 (595)
Q Consensus 398 ~~~a~~~~~~~-----------------~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 452 (595)
..++.+....+ ...... |+ ...|......+.+.+..++|...+.++.+.. +...
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~ 684 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSA 684 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhH
Confidence 11111111111 000011 12 1344556667788888999998888887765 6667
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCHHHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARD--LFLDMEENAAAPDVITFDMLI 529 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~ 529 (595)
..|...+..+...|.+++|.+.|..... +.|+ +....+++.++...|+..-|.. ++..+++.+ +.+...|..++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 7788888888889999999999998887 6776 5678888999999998887777 899999876 66789999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 040027 530 HGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
..+.+.|+.++|.+.|....+.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999988863
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=2e-09 Score=102.74 Aligned_cols=450 Identities=14% Similarity=0.072 Sum_probs=276.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIA 185 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 185 (595)
+...+++...+...+.+++. .+-...+.....-.+...|+.++|....+...+..+ .+...|+.+...+-...++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHH
Confidence 44567888888888888774 333444443333345566888888887777776543 3667777777777778888888
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLF 265 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 265 (595)
++.|..+...+ +.|...|.-+.-.-++.|+++........+.+.. +.....|..+..++.-.|+...|..+.
T Consensus 95 iKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 95 IKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred HHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888775 5667777777777777788877777776666642 224566777777777888888888888
Q ss_pred HHHHHCC-CCCCHhhHHHH------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 266 IEMMDQG-VQPSVVTFNVI------MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 266 ~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
+...+.. ..|+...+... .....+.|..+.|++.+...... +......-..-...+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 8777653 23444433321 23455677777777776655443 2212223334456677888888888888888
Q ss_pred HhcCCCCCHHHHHHH-HHHHHhCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCC
Q 040027 339 ESMGCKHDDVSYNIL-INGYCKNKEVEEAL-SLYREMVSKGIKPTVVTYNTLFLGLFE-IHQVEHALKLFDEMQRDGVAA 415 (595)
Q Consensus 339 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 415 (595)
+.. .||...|... ..++.+-.+.-+++ .+|....+. .|.......+-..... ..-.+...+++....+.|+++
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 876 3555554443 34443333333444 556655543 1222211111111111 222344455566666777654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----H----cC----------CCcCHHHHH--HHHHHHHhcCChHHHHHHH
Q 040027 416 DTRTYTTFIDGLCKNGYIIEAVELFRTLR----I----LK----------CELDIQAYN--CLIDGLCKSGRLKFAWELF 475 (595)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~~----------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 475 (595)
-. ..+...|-.-...+ +++++. . .+ -+|....|. .++..+-..|+++.|...+
T Consensus 322 vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 322 VF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred hh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 32 22322222211111 222221 0 00 145544443 4566678899999999999
Q ss_pred HhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 040027 476 CSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVM 554 (595)
Q Consensus 476 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 554 (595)
+.+++ ..|+ +..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-+.-..++++.++|.++.......|..
T Consensus 395 d~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 395 DLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 99988 4666 4566666788899999999999999998875 455544445666777889999999999888876642
Q ss_pred C--CHH----HHHH--HHHHHHhcCcccccchHH
Q 040027 555 P--DAS----IVSI--VVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 555 p--~~~----~~~~--l~~~~~~~g~~~~~i~~~ 580 (595)
. +-. .|.. -+.+|.|.|++-.+++++
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 1 111 1111 255677777766555544
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.3e-09 Score=94.42 Aligned_cols=301 Identities=13% Similarity=0.028 Sum_probs=224.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040027 252 LCHANDWNEAKRLFIEMMDQ-GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINR 330 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (595)
.+..++...+...+-.+... .++.|......+...+...|+..+|...|+.....+.. +..........+.+.|+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhh
Confidence 33445555555554444333 35667788889999999999999999999998775311 22333333445567888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040027 331 AEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 410 (595)
...+...+.... +.....|..-+......+++..|+.+-++.++.+.. +...+..-...+...+++++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 888888876542 234445555556666788999999999998886444 556666666788899999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHhc-CChHHHHHHHHhcccCCCCCC-H
Q 040027 411 DGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLI-DGLCKS-GRLKFAWELFCSLPHGVLVPN-V 487 (595)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~~~~p~-~ 487 (595)
.. |-+..+|..++..|...|++.+|..+-+...+.- +.+..+...++ ..+.-. .--++|..++++... +.|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccH
Confidence 62 5678999999999999999999998888776542 55666666553 333322 335789999999887 6787 4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD-ASIVSIV 563 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 563 (595)
...+.+...+...|..+.++.++++.+.. .||....+.|++.+...+.+++|...|..++.. .|. ..+..-+
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~~sl~Gl 511 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CccchHHHHHH
Confidence 56778888999999999999999999884 688899999999999999999999999999974 464 4444443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1e-11 Score=126.18 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=169.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILR 124 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (595)
+++++|...|+++++.+|+ ++..|..+..++...+.. | .+...+++++|...++++++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~-------g-------------~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQM-------G-------------IFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHc-------C-------------CcccchHHHHHHHHHHHHHh
Confidence 4466788888888888877 666665555443322110 0 01134567889999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccc
Q 040027 125 SCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCK 204 (595)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 204 (595)
.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..++++.+.+ |
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P 403 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------P 403 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C
Confidence 85 5577788888888888899999999999988875 3367778888888889999999999999988876 3
Q ss_pred CcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040027 205 PNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIM 284 (595)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 284 (595)
.+...+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++... .+.+....+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~ 482 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLY 482 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHH
Confidence 3333444445556667888889888888776532224555677777888888888888888877654 111233444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040027 285 DELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESM 341 (595)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 341 (595)
..+...| +.+...++.+.+..-. ...........|.-.|+-+.+..+ +++.+.
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 5566666 4666666665553110 111111133444455665555554 555543
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2.1e-12 Score=112.15 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=196.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040027 316 NTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 395 (595)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (595)
+.+.++|.+.|-+.+|...++..++. .|-+.+|..|..+|.+..++..|+.++.+-++. .+.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788999999999999999988876 677889999999999999999999999988876 333555566677788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 040027 396 HQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELF 475 (595)
Q Consensus 396 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (595)
++.+++.++|+...+.. +.+.+....+...|.-.++++-|+..|++++..| ..++..|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998873 5666777777778888999999999999999998 568999999999999999999999999
Q ss_pred HhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 040027 476 CSLPHGVLVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKV 553 (595)
Q Consensus 476 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 553 (595)
+++...--.|+ ..+|..+.......||+.-|.+.|+-.+..+ +.+...++.|.-.-.+.|+.++|..++..+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-- 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV-- 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--
Confidence 98877433344 5789999988889999999999999998875 556788888888888999999999999998863
Q ss_pred CCC
Q 040027 554 MPD 556 (595)
Q Consensus 554 ~p~ 556 (595)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 455
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=8.6e-12 Score=108.48 Aligned_cols=230 Identities=15% Similarity=0.019 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHH
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTII 214 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (595)
+.+..+|.+.|.+.+|.+.++..++. .|-+.+|..|...|.+..+...|+.+|.+.++.. |.++.......
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------CchhhhhhhhH
Confidence 46778888888888888888887776 5566777888888888888888888888877753 55555566677
Q ss_pred HHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 040027 215 DGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMD 294 (595)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 294 (595)
+++-..++.++|.++|+...+.. +.+++....+...|.-.++++-|+.+|+.+++.|+. ++..|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77778888888888888877653 335666666666777778888888888888888776 7777888888888888888
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 040027 295 EASRLLDLMVQRGVRP--NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 372 (595)
Q Consensus 295 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (595)
-++..|.+....--.| -..+|..+.......||+..|.+.|+..+..+ +.....++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 8888888777653222 24567777777777888888888888877664 34556778887777888888888888877
Q ss_pred HHHC
Q 040027 373 MVSK 376 (595)
Q Consensus 373 ~~~~ 376 (595)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7654
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.4e-09 Score=96.56 Aligned_cols=400 Identities=14% Similarity=0.092 Sum_probs=259.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc-CCHhHHHHHHHHHhhCCCCCCHh
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE-GFVDKAKALFLQMKDENINPDVV 243 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 243 (595)
+.......+..|...++.+.|+.++.+.+... ..+. .+.++..+.+. ++-.++.--+.+.+.. .+.-..
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~--------r~p~-inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~ 165 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL--------RSPR-INLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQ 165 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc--------cchh-HHHHHHHHHhccccccHHHHhhhHHHHh-cchHHH
Confidence 44455667778888888888888877765432 1122 23333333332 2222232223333222 111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--HhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDEL--CKNRKMDEASRLLDLMVQR-GVRPNACTYNTLMD 320 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 320 (595)
....++..-.+ | .+.+ -..|-...++|........+.++ +..++...+...+-.+... -.+-|......+..
T Consensus 166 ~i~~ll~l~v~-g-~e~~---S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak 240 (564)
T KOG1174|consen 166 VIEALLELGVN-G-NEIN---SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGK 240 (564)
T ss_pred HHHHHHHHhhc-c-hhhh---hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhh
Confidence 11111111111 1 1111 11122222344444444444433 3444444444444333332 36678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 040027 321 GFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEH 400 (595)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 400 (595)
++...|+.++|+..|++..-.+ +.+..........+.+.|+++....+...+.... +-+...|..-+......++++.
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999988663 2333344445556678899999988888887642 1234445555566677889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 401 ALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 401 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
|+.+-++.++.+ +-+...+..-...+...|+.++|.-.|+.+.... |-+...|..|+..|...|++.+|.-.-+....
T Consensus 319 AL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 319 ALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 999999888764 4455666666778889999999999999998775 67899999999999999999999888776655
Q ss_pred CCCCCCHHHHHHHH-HHHH-hcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 040027 481 GVLVPNVVTYNIMI-QGLC-NDGQMDKARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDA 557 (595)
Q Consensus 481 ~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 557 (595)
. +..+..+...+. ..+. .-.--++|.+++++.+.. .|+ ......+...+...|+++++..++++.+. ..||.
T Consensus 397 ~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~ 471 (564)
T KOG1174|consen 397 L-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDV 471 (564)
T ss_pred H-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hcccc
Confidence 2 233455554442 3333 233457899999988875 465 45667788889999999999999999996 67999
Q ss_pred HHHHHHHHHHHhcCcccccchHHHHhhhhcc
Q 040027 558 SIVSIVVDLLVKNEISLKSLPSFLVQERQGE 588 (595)
Q Consensus 558 ~~~~~l~~~~~~~g~~~~~i~~~~~~~~~~~ 588 (595)
.....+++++...+.+++..+.+...-+..+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 9999999999999999977777665554443
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=4.6e-11 Score=108.41 Aligned_cols=203 Identities=11% Similarity=0.045 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345667777777777888888888888777663 3456666677777777777777777777777654 23556666677
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
..+...|++++|.+.++++..... .+.....+..+..++...|++++|...+++..... +.+...+..+...+.
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 777777777777777777765321 12234455666666777777777777777766543 224455666666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 254 HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
..|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777777766654 233444555555666666666666666655543
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-09 Score=104.30 Aligned_cols=416 Identities=12% Similarity=0.013 Sum_probs=281.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC-HhhHH
Q 040027 92 LFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN-VITYN 170 (595)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 170 (595)
+.-++..|..+.-+...+|++..+.+.|++..... .-....|..+.-.|...|.-..|+.+++........|+ ...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34688999999999999999999999999998764 33677889999999999999999999998776643343 33333
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHhhCCC
Q 040027 171 TLINGLC-RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE-----------GFVDKAKALFLQMKDENI 238 (595)
Q Consensus 171 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 238 (595)
.....|. +.+..++++....++....+.-. -...+..+..+.-+|... ....++.+.+++..+.+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333 46788888888777776321100 122345555555555432 124577888888887643
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 239 NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTL 318 (595)
Q Consensus 239 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 318 (595)
. |+.....+.--|+..++...|.+...+.++.+-..+...|..+...+...+++.+|+.+.+.....- ..|......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 2 3444444555678889999999999999998666789999999999999999999999999887641 1122222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-CCCHH-------HHHHHHHHHHhCCCHHHHHHHHHH-----------------H
Q 040027 319 MDGFCLMGKINRAEELFGSMESMGC-KHDDV-------SYNILINGYCKNKEVEEALSLYRE-----------------M 373 (595)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~-----------------~ 373 (595)
+..-...++.+++......+...=- .+... ....-.......++..++.+..+. +
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 2333335565555544443321100 00000 000000000001111111111111 1
Q ss_pred HHCCCCCCH--------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 374 VSKGIKPTV--------VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRI 445 (595)
Q Consensus 374 ~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 445 (595)
....+.|.. ..|......+...+..+++...+.+..+. .+.....|......+...|...+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 111111111 23445556677888899999888888776 366677788888888999999999999999998
Q ss_pred cCCCcCHHHHHHHHHHHHhcCChHHHHH--HHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 446 LKCELDIQAYNCLIDGLCKSGRLKFAWE--LFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
.+ |.++....++..++.+.|+...|.. ++..+.+ +.| +...|..+...+.+.|+.++|.+.|..+.+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 76 6678899999999999999888888 9999998 455 5899999999999999999999999999875
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=9e-11 Score=119.38 Aligned_cols=269 Identities=15% Similarity=0.070 Sum_probs=189.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 040027 128 TPNAATFNSLIKGLHA-----ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR---------TGHTMIALNLFEEMA 193 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 193 (595)
+.+...|...+.+... .+.+++|++.|++..+... -+...+..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 5567766666655322 2456789999999998742 245566666655442 345789999999999
Q ss_pred hcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040027 194 NGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV 273 (595)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 273 (595)
+.+ |.+..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.++...
T Consensus 332 ~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 876 5678888888889999999999999999998875 33567788888999999999999999999988643
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 040027 274 QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNIL 353 (595)
Q Consensus 274 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (595)
. +...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++.... +.+....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 2 2233334455567789999999999998876433355567778888899999999999998876552 2334455666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 354 INGYCKNKEVEEALSLYREMVSKG-IKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
...|...| +.|...++.+.+.. ..+....+ +...+.-.|+.+.+... +++.+.+
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66777777 47777777766531 11222222 33445556666666655 7776653
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-08 Score=96.29 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
..+=++.+...|++++|.+...+++..+ +.+..++..=+.++.+.+++++|+.+.+.-... ..+..-+..-+-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 3345566778899999999999999876 567777777788899999999999665543321 1111111222334447
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHhcCC
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHG-LCHAND 257 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~ 257 (595)
.+..++|+..++... +.+..+...-...+.+.|++++|.++|+.+.+.+.+ + +...+.+ +...+-
T Consensus 92 lnk~Dealk~~~~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA 157 (652)
T ss_pred cccHHHHHHHHhccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH
Confidence 899999999988332 233456666778888999999999999999876432 2 2211111 111111
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHH---HHHHHHhcCChHHHHHHHHHHHHCC-------CCCC------H-HHHHHHHH
Q 040027 258 WNEAKRLFIEMMDQGVQPSVVTFNV---IMDELCKNRKMDEASRLLDLMVQRG-------VRPN------A-CTYNTLMD 320 (595)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~------~-~~~~~l~~ 320 (595)
-..+. + +......| ..+|.. ..-.+...|++.+|+++++...+.+ -.-+ . ..-..+..
T Consensus 158 ~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 158 ALQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred hhhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 11111 1 22222222 223333 3345678899999999998883211 1101 1 12233455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 040027 321 GFCLMGKINRAEELFGSMESMG 342 (595)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~ 342 (595)
++-..|+.++|..++..+++..
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc
Confidence 6677899999999999888775
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.9e-10 Score=104.32 Aligned_cols=199 Identities=13% Similarity=0.060 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 347 DVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDG 426 (595)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 426 (595)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555566666666666666666666554322 34455556666666666666666666666543 3344555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChh
Q 040027 427 LCKNGYIIEAVELFRTLRILKC-ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMD 504 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 504 (595)
+...|++++|...++++..... +.....+..+..++...|++++|...+++.... .| +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 6677777777777777665321 223445666677777777777777777777663 33 3556667777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+|...++++.+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888777652 44556666667777777888888777777654
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.4e-08 Score=94.60 Aligned_cols=457 Identities=12% Similarity=0.072 Sum_probs=246.1
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhH--HhhCCC--CCCHHHHHHHHHHHHhcCChhHH
Q 040027 40 GDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTR--LNATGL--FPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 40 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
.....|++++|.+.-++++...|+ +...+..-+-++.+.++|++. .+.... .-+...+..-+.++.+.+..++|
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 445679999999999999999998 888888888889999998882 222111 11222222345566788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-NVITYNTLINGLCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (595)
+..++-+. +.+..+...-...+.+.|++++|.++|+.+.+.+.+. +......++..-. ...+. +.+....
T Consensus 99 lk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 99 LKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPE 169 (652)
T ss_pred HHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccC
Confidence 99888322 2233355556677888899999999999997764321 1122222222111 11111 2222221
Q ss_pred cCCCCCccccC-cHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC-------CCCCH-------hHHHHHHHHHHhcCCHH
Q 040027 195 GNGEIGVVCKP-NTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN-------INPDV-------VTYNSLIHGLCHANDWN 259 (595)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~ 259 (595)
++. +-..+......++..|++.+|+++++...+.+ -.-+. ..-..|...+...|+.+
T Consensus 170 --------v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 170 --------VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred --------CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111 23334445566777899999999988873321 00000 01222334455667777
Q ss_pred HHHHHHHHHHHCCCCCCHhhH----HHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 260 EAKRLFIEMMDQGVQPSVVTF----NVIMDELCKNRKMDE-ASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEEL 334 (595)
Q Consensus 260 ~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 334 (595)
+|..+|...++... +|.... |.++..-....-++. ++..++... ...+...
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~-----------------------~~l~~~~ 297 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV-----------------------FKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHH-----------------------HHhHHHH
Confidence 77777766666532 233221 111111100000110 000111000 0001111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHCC
Q 040027 335 FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLF--EIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 412 (595)
+..+.... ......-+.++..| .+..+.+.++...... ..|.. .+..++..+. +...+..+..++...-+..
T Consensus 298 l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 298 LSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 11111100 00111112222223 2333344443333222 12222 2233333222 2224667777777666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCC--
Q 040027 413 VAADTRTYTTFIDGLCKNGYIIEAVELFR--------TLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGV-- 482 (595)
Q Consensus 413 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 482 (595)
......+....++.....|+++.|.+++. .+.+.+ -.+.+...++..+.+.++.+.|..++.+.+..-
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 22334556666677778888888888888 444433 334556667777777777777777777665410
Q ss_pred CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 483 LVPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 483 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
..+. ..+|..++..-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+.
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1111 2233344444557799999999999999975 77888888899888776 4788877766654
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.9e-09 Score=106.32 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGV--LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA-APD-VITFDML 528 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l 528 (595)
..|..+++.+......+.|..+.+++.... +.-|..-+..+.....+.+....+..++.++.+.-. .|+ ..++..+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 345555666666666666666666654421 222344555666666777777777777777665311 221 3344455
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCC
Q 040027 529 IHGFIRINEPSKVNELLHKMKEKKV 553 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~~~~ 553 (595)
+......|+.+...++.+-+...|+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhh
Confidence 5555566666666666555554443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.40 E-value=1.7e-10 Score=95.97 Aligned_cols=200 Identities=15% Similarity=0.031 Sum_probs=143.1
Q ss_pred hcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcC
Q 040027 31 HFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIG 110 (595)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 110 (595)
...++..+.+|+++|++..|.+.++++++.+|+ +..+|..+...|.+.|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-------------------------------~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-------------------------------YYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-------------------------------cHHHHHHHHHHHHHcC
Confidence 334556777888888888888888888888887 3444556666677778
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG-CEPNVITYNTLINGLCRTGHTMIALNLF 189 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (595)
+.+.|.+.|++++... +.+..+.|.....++.+|++++|...|++....- ...-..+|..+..+..+.|+++.|...|
T Consensus 84 e~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 84 ENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred ChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 8888888888888774 4466777777777888888888888888776641 1123456777777777778888888888
Q ss_pred HHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 190 EEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMM 269 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 269 (595)
++.+..+ +..+.+...+.......|++-.|...++.....+. ++..+.-..+..-...|+.+.+.++=..+.
T Consensus 163 ~raL~~d-------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 163 KRALELD-------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhC-------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8777765 34456666677777777777777777777776654 666666666777777777777666655554
Q ss_pred H
Q 040027 270 D 270 (595)
Q Consensus 270 ~ 270 (595)
+
T Consensus 235 r 235 (250)
T COG3063 235 R 235 (250)
T ss_pred H
Confidence 4
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.7e-09 Score=97.29 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=81.0
Q ss_pred cccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh----HHhhCCCCCC-HHHHHHHHHHHHhcCChhH
Q 040027 40 GDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT----RLNATGLFPN-LYTYNILINCFCKIGRVSL 114 (595)
Q Consensus 40 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 114 (595)
+....|+++.|+..|-.++.++|. +...|..-..+|+..|++.+ ......+.|+ +.-|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 346679999999999999999997 88999999999999999998 2333445554 5778999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040027 115 GFIAFGRILRSCFTPNAATFNSLIKGL 141 (595)
Q Consensus 115 A~~~~~~~~~~~~~~~~~~~~~l~~~~ 141 (595)
|+..|.+-++.. +.+...++.+..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999999999874 44555667777666
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=2.6e-08 Score=97.95 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAA-TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
........+...|++++|+..++..... -+|.. ........+.+.|+.++|..+|..++..++ .+..-|..+..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence 3344455677889999999988876655 33444 445667778888999999999999988853 2444555555554
Q ss_pred Hhc-----CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh-HHHHHHHHHhhCCCCCCHhHHHHHHH
Q 040027 177 CRT-----GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD-KAKALFLQMKDENINPDVVTYNSLIH 250 (595)
Q Consensus 177 ~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~ 250 (595)
... .+.+...++++++.... |...+...+.-.+.....+. .+..++..+...|++ .+|..|-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~ 151 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKP 151 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Confidence 222 24667778888777654 22222222222222212232 344556666677754 34555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----C----------CCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040027 251 GLCHANDWNEAKRLFIEMMDQ----G----------VQPSVV--TFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACT 314 (595)
Q Consensus 251 ~~~~~~~~~~A~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (595)
.|.......-..+++...... + -+|+.. ++..+...|...|++++|+.+.++.+... +..+..
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~el 230 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVEL 230 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 565554444445555554432 1 123332 34556677888899999999999888873 224677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH--------HH
Q 040027 315 YNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVT--------YN 386 (595)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~ 386 (595)
|..-++++-..|++.+|.+.++.....+ .-|...-+..+..+.+.|+.++|.+++....+.+..|.... ..
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 7888888889999999999998888775 34666667777888889999999998888877654332221 13
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 040027 387 TLFLGLFEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 387 ~l~~~~~~~~~~~~a~~~~~~~~~ 410 (595)
....+|.+.|++..|++.|..+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445678888888888887776654
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.7e-08 Score=94.71 Aligned_cols=434 Identities=12% Similarity=0.042 Sum_probs=248.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCh
Q 040027 104 NCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN-VITYNTLINGLCRTGHT 182 (595)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 182 (595)
.+.+..|+++.|+..|-+++... +++...|..-..+|...|++++|.+=-.+-.+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999999986 558888998999999999999999877776665 445 45788889999999999
Q ss_pred hHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHH---HHHHHHHhhC---CCCCCHhHHHHHHHHHHhcC
Q 040027 183 MIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKA---KALFLQMKDE---NINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~ 256 (595)
++|+..|.+-++.+ +.+...+..+..++.......+. -.++..+... ........|..++..+-+.-
T Consensus 87 ~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999876 56677777777776211100000 0111111110 00001112222222221110
Q ss_pred -------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 040027 257 -------DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK-NRKMD----EASRLLDLMVQ-RGVRPNACTYNTLMDGFC 323 (595)
Q Consensus 257 -------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 323 (595)
.........-.+...+. ..+......... ..... .......+..+ .....-..-...++++..
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDE----LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCcc----ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 00000000000000000 000000000000 00000 00000000000 000001123445677777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHccC
Q 040027 324 LMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNT-------LFLGLFEIH 396 (595)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~ 396 (595)
+..+++.+++.+....+.. .+..-++....+|...|.+........+.++.|.. ...-++. +..++.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHH
Confidence 7788888888888887764 45566677777888888888777777776665432 2222332 333555667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040027 397 QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFC 476 (595)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (595)
+++.++..|.+.+.....|+. ..+....+++....+...-.+... ..-...-+..+.+.|++..|+..|.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 788888888776654333221 122333444444444443332111 2222233566778888888888888
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 477 SLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 477 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
+++... +-|...|.....+|.+.|.+..|+.-.+..++.+ ++....|..-+.++....+|++|.+.|++.++.+ |+
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~ 458 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PS 458 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ch
Confidence 888753 2246778888888888888888888888887764 4456667777777777788888888888888754 54
Q ss_pred -HHHHHHHHHHHH
Q 040027 557 -ASIVSIVVDLLV 568 (595)
Q Consensus 557 -~~~~~~l~~~~~ 568 (595)
......+.+++.
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 444455555444
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=6.7e-09 Score=102.00 Aligned_cols=296 Identities=17% Similarity=0.137 Sum_probs=208.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHH
Q 040027 210 YSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVT-FNVIMDELC 288 (595)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 288 (595)
..-...++...|++++|.+.++.-... +.............+.+.|+.++|..+|..+++.+ |+... |..+..+..
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 334456678899999999999886654 33345566677899999999999999999999975 44444 444444442
Q ss_pred h-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 040027 289 K-----NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKI-NRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 362 (595)
Q Consensus 289 ~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (595)
- ..+.+....+|+++...- |.......+.-.+.....+ ..+..++......|+| .+|..+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2 235678888999887753 2222222222222221222 3455666677777754 356666666765555
Q ss_pred HHHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 363 VEEALSLYREMVSK----G----------IKPTVV--TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDG 426 (595)
Q Consensus 363 ~~~A~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 426 (595)
.+-...++...... + -+|+.. ++..+.+.|...|++++|+..+++.++.. |..+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 55555565555432 1 123332 44666788889999999999999999873 4447788888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH--H----HH--HHHHHHHH
Q 040027 427 LCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV--V----TY--NIMIQGLC 498 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~----~~--~~l~~~~~ 498 (595)
+-..|++.+|...++.+...+ .-|..+-+..+..+.+.|+.++|..++......+..|-. . .| ...+.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 667788888889999999999999999998876543322 1 33 34457888
Q ss_pred hcCChhHHHHHHHHHHH
Q 040027 499 NDGQMDKARDLFLDMEE 515 (595)
Q Consensus 499 ~~g~~~~A~~~~~~~~~ 515 (595)
+.|++..|++.|....+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998877765
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.35 E-value=6.2e-09 Score=104.08 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=120.2
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh----HHhhCCCCC---CHHHHHHHHHHHHhcC
Q 040027 38 REGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT----RLNATGLFP---NLYTYNILINCFCKIG 110 (595)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~l~~~~~~~g 110 (595)
++-|+...+...|.+.|+.+.+.++. +..++..+...|++..+++. .+......| -...|..+.-.|...+
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCcc
Confidence 34445556889999999999999998 99999999999999999988 111111111 2334555555678889
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFE 190 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (595)
+..+|+..|+.+.+.. |.|...|..+..+|...|++..|.++|.++.... +.+...........+..|++.+|+..+.
T Consensus 577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999885 6689999999999999999999999999998763 2233344445556678999999999998
Q ss_pred HHHhc
Q 040027 191 EMANG 195 (595)
Q Consensus 191 ~~~~~ 195 (595)
.+...
T Consensus 655 ~ii~~ 659 (1238)
T KOG1127|consen 655 LIIYA 659 (1238)
T ss_pred HHHHH
Confidence 88753
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=3.2e-09 Score=88.55 Aligned_cols=200 Identities=13% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
....|.-.|.+.|++..|..-++++++.. +.+..+|..+...|.+.|..+.|.+.|++..... +-+..+.+.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556667777777777777777777764 4456677777777777777777777777777764 335667777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCC
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAND 257 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 257 (595)
..|++++|...|++...... ...-..+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.....+.|+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD 188 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc
Confidence 77777777777777766431 23335667777777777777777777777776653 2244556666677777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 258 WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 258 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
+-.|...++.....+. ++..+....++.....|+.+.+.++=..+.+.
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777777666544 56666666677777777776666655555443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=6.2e-10 Score=107.72 Aligned_cols=243 Identities=18% Similarity=0.127 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhc-----CCC-
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRS-----CF-TPNAA-TFNSLIKGLHAESRIMEAAALFTKLKAF-----GCE- 163 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~- 163 (595)
.+...+...|...|+++.|..+++.+++. |. -|... ..+.+...|...+++++|+.+|+++... |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556899999999999999999999876 11 22233 3445778899999999999999998753 211
Q ss_pred -CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCc-HHHHHHHHHHHHHcCCHhHHHHHHHHHhhC---CC
Q 040027 164 -PNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPN-TVTYSTIIDGLCKEGFVDKAKALFLQMKDE---NI 238 (595)
Q Consensus 164 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 238 (595)
.-..++..|..+|...|++++|...++++...-........+. ...++.++..+...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1245678888899999999999998888765432111011222 334666777788888888888888765542 01
Q ss_pred CC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--CC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 040027 239 NP----DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG----V--QP-SVVTFNVIMDELCKNRKMDEASRLLDLMVQR- 306 (595)
Q Consensus 239 ~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 306 (595)
.+ -..+++.|...|.+.|++++|.++|++++... - .+ ....++.+...|.+.+.+.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 23467777777777777777777777765431 1 11 1234556666666666666666666554321
Q ss_pred ---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 307 ---G--VRPNACTYNTLMDGFCLMGKINRAEELFGSME 339 (595)
Q Consensus 307 ---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 339 (595)
| .+-...+|..|+..|.+.|+++.|+++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 11123455566666666666666666655543
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.9e-08 Score=97.29 Aligned_cols=441 Identities=12% Similarity=0.094 Sum_probs=266.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGR 121 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 121 (595)
-++++++--...++..++.+.. ++.+++++...|...++-.++......--| +..+..|+...++.-|.-.|++
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~--d~a~hnAlaKIyIDSNNnPE~fLkeN~yYD----s~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQ--DPATHNALAKIYIDSNNNPERFLKENPYYD----SKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCc--chHHHhhhhheeecCCCChHHhcccCCcch----hhHHhhhhcccCCceEEEeecc
Confidence 4678888888899999999877 999999999999999987775544432222 2344455555555444433332
Q ss_pred HHhC----CCCCCHHHHHHHHHHHHhcCCHhH-----------HHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChhH
Q 040027 122 ILRS----CFTPNAATFNSLIKGLHAESRIME-----------AAALFTKLKAFGCE--PNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 122 ~~~~----~~~~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 184 (595)
-... ++....+.|....+.+.+..+.+- -.++.+...+.+++ .|+......+.++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1100 012223334444444444333321 12344555444332 356667777888888888888
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
-+++++++.-.+.. +..+...-+.|+-...+ -+..+..++.+++-.-+. |+ +...+...+-+++|..+
T Consensus 1003 LIELLEKIvL~~S~----Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~i 1070 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSV----FSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAI 1070 (1666)
T ss_pred HHHHHHHHhcCCcc----cccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHH
Confidence 88888888765422 12233334444444444 345566677766654321 12 34456667778888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040027 265 FIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCK 344 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (595)
|++.- .+....+.++. .-+..+.|.++-++.- .+.+|..+..+-.+.|...+|++-|-+.
T Consensus 1071 fkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1071 FKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred HHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 87643 24445555543 3455666666555432 4567888888888888888887766442
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 345 HDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFI 424 (595)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 424 (595)
.|+..|...+....+.|.|++-.+.+....+..-.|... ..++-+|++.++..+.++.+ ..|+......+.
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVG 1201 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHh
Confidence 366678888888888888888888777766654444443 55677788877776655443 246666667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 040027 425 DGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMD 504 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 504 (595)
.-|...|.++.|.-+|.. ...|..+...+...|++..|...-+++. +..+|-.+-.+|...+.+.
T Consensus 1202 drcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhh
Confidence 777777777777766653 3345566666666777777666555443 3456666666666555443
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
-| +|...++-....-...++..|...|-+++-..+++..+
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 33 23333333344445556666666666666666655544
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=4.4e-09 Score=97.87 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040027 315 YNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE 394 (595)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (595)
+..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|...|++.++..+. +..++..+...+..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4444445555555555555555554442 233445555555555555555555555555443222 23344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 040027 395 IHQVEHALKLFDEMQR 410 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~ 410 (595)
.|++++|.+.++...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555554444
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=7.4e-09 Score=96.36 Aligned_cols=94 Identities=14% Similarity=-0.049 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 350 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK 429 (595)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 429 (595)
|..+...|...|++++|...|++.++..+. +...|..+...+...|++++|...|+..++.. +.+...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444444444444555554444444443222 33444444444444455555554444444432 2223344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 040027 430 NGYIIEAVELFRTLRI 445 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~ 445 (595)
.|++++|.+.+++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555444444
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=1.6e-09 Score=104.90 Aligned_cols=247 Identities=20% Similarity=0.187 Sum_probs=164.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-----C-CCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCC-C
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAF-----G-CEPNVITY-NTLINGLCRTGHTMIALNLFEEMANGNGE-I 199 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 199 (595)
|.-..+...+...|..+|+++.|..+++...+. | ..|...+. ..+...|...+++.+|..+|+++...... .
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445666889999999999999999988764 2 12333333 34778899999999999999998864321 1
Q ss_pred CccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----CC-CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 040027 200 GVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----NI-NPD-VVTYNSLIHGLCHANDWNEAKRLFIEMMDQ- 271 (595)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~- 271 (595)
|...+.-..+++.|..+|.+.|++++|...+++..+. +. .|. ...++.+...+...+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2222334667888999999999999999888876542 11 112 223555667788888888888888766542
Q ss_pred --CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 272 --GVQPS----VVTFNVIMDELCKNRKMDEASRLLDLMVQRG----V---RPNACTYNTLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 272 --~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
-+.++ ..+++.+...|...|++++|.++++.++... . .-....++.+...|.+.+++..|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11111 3467778888888888888888887776531 1 112345566677777777777777776654
Q ss_pred Hhc----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 040027 339 ESM----G--CKHDDVSYNILINGYCKNKEVEEALSLYREMV 374 (595)
Q Consensus 339 ~~~----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (595)
... | .+....+|..|...|...|+++.|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 321 1 12223466677777777777777777666554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.6e-08 Score=87.40 Aligned_cols=420 Identities=15% Similarity=0.120 Sum_probs=244.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHH-HHHHHHH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYN-TLINGLC 177 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 177 (595)
+.+++..+.+..++++|++++..-.++. +.+......+..+|....++..|.+.|+++... .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4466667788899999999999988884 336666777778888899999999999999876 44444443 3456677
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCC
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAND 257 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 257 (595)
+.+.+..|+.+...|.... .....+...-..+....+|+..+..+.++....| +..+.+...-...+.|+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 8899999999988876421 0111222222334456789999999998887543 45555566666788999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHH
Q 040027 258 WNEAKRLFIEMMDQ-GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTY----NTLMDGFCLMGKINRAE 332 (595)
Q Consensus 258 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~ 332 (595)
++.|.+-|+...+. |.. ....|+..+ ++.+.|++..|++...+++.+|++..+..- .-.+.+ ...|+. .
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~ 233 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L 233 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H
Confidence 99999999998876 454 345566444 677889999999999999998865322210 000000 000110 0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 333 ELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK-GIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
.+.... -...+|.-...+.+.++++.|.+.+.+|.-+ .-..|+.|...+.-.- ..+++....+-+.-++..
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000000 1224455555677788888888887777533 1233555555443222 234444445555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH
Q 040027 412 GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC-ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTY 490 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 490 (595)
+ |-...|+..++-.||+..-++-|-.++.+-..... -.+...|+.+=..-......++|.+-++.+... +.-.....
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRkl 383 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKL 383 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3 34557777788888888888888777754332111 122333333222222345566666665554331 00000011
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 491 NIMIQGLCNDGQM---DKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 491 ~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
..-+.--...++- ..|++-+++.++. -......-.+.|++..++..+.+.|+.-.+.
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111111111 1222333333332 1122334456677888888888888877753
No 87
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=9e-09 Score=101.79 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 344 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTF 423 (595)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 423 (595)
.+++.++...+.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+++-|...|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 366667777777777777777777777777777766666655555544 56666666666666677777777776666
Q ss_pred HHHHHhcCC
Q 040027 424 IDGLCKNGY 432 (595)
Q Consensus 424 ~~~~~~~g~ 432 (595)
+..+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 655555443
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.22 E-value=5.2e-07 Score=79.88 Aligned_cols=192 Identities=8% Similarity=0.048 Sum_probs=94.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 284 MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 284 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
+..+...|+...++.....+++.. +-+...+..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 334455666666666666666642 2255555556666666777776666666655543 33444555556666666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-H---HH---H------HHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVT-Y---NT---L------FLGLFEIHQVEHALKLFDEMQRDGVAADT---RTYTTFIDGL 427 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~-~---~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 427 (595)
+.++...++.++. .|+... | .. + +......++|.+++...+...+....... ..+..+-.++
T Consensus 240 ~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 240 ENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 7666666666654 233211 1 00 0 01112233444444444444443211111 1122222333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
...|.+.+|++...+++... +.|..++..-..+|.-...++.|+.-|+.+.+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44455555555555555432 22344555555555555555555555555554
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=2.1e-07 Score=93.51 Aligned_cols=501 Identities=12% Similarity=-0.015 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh--HHh--hCCCC-CCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT--RLN--ATGLF-PNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~--~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
.+...|+..|-++++.++. =...|..+...|...-+-.. ... .-.+. .+...+..+...|.+..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4466666777777777665 44455555555444331111 111 11111 24555666666666666666666663
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040027 120 GRILRSCFTPN--AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNG 197 (595)
Q Consensus 120 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 197 (595)
-+.-+.. +.- ...|-...-.|.+.++...|+..|+...+.. +-|...|..++.+|...|++..|+++|.++...+
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr- 626 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR- 626 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-
Confidence 3333221 111 1122223334556666666666666666654 2366666677777777777777777776666543
Q ss_pred CCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH----
Q 040027 198 EIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE------NINPDVVTYNSLIHGLCHANDWNEAKRLFIE---- 267 (595)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~---- 267 (595)
|.+...-.-.....+..|.+.+|...+..+... +...-..++..+...+...|-..++.+++++
T Consensus 627 ------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 627 ------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred ------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 112222222233344556666666666655432 0111122333333333333333333333322
Q ss_pred ---HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHH
Q 040027 268 ---MMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKI---N---RAEELFGSM 338 (595)
Q Consensus 268 ---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~ 338 (595)
...+....+...|-.+.. +..+|-... .+ .|+......+..-....+.. + -+.+.+-.-
T Consensus 701 f~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 222211112222222221 111222211 00 11222222111111111111 1 011111111
Q ss_pred HhcCCCCCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040027 339 ESMGCKHDDVSYNILINGYCK--------NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 410 (595)
.+. ..+..+|..++..|.+ ..+...|+..+.+.++..-. +..+|+.+.-. ...|++.-+...|-+-..
T Consensus 769 lsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 769 LSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 111 1123344444444433 12234677777777664222 45555555443 666777777777666554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc----CCCCCC
Q 040027 411 DGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH----GVLVPN 486 (595)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 486 (595)
. .+....+|..+...+.+..+++-|...|....... |.+...|..........|+.-++..+|..-.. .|-.|+
T Consensus 845 s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 S-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred c-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 4 25556677777777888888888888888888765 55666666666666677887777777776221 223344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCC
Q 040027 487 VVTYNIMIQGLCNDGQMDKARDLFLDMEE---------NAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK-KVMPD 556 (595)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~ 556 (595)
..-|.........+|+.++-+...+.+.. .+.+.....|...+...-+.+.+..|.....++... -...|
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44554444555566666654443333221 133445567777777777778887777777766511 01123
Q ss_pred HHH----HHHHHHHHHhcCccc
Q 040027 557 ASI----VSIVVDLLVKNEISL 574 (595)
Q Consensus 557 ~~~----~~~l~~~~~~~g~~~ 574 (595)
... -...+..+...|.+|
T Consensus 1003 ~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchh
Confidence 333 334555666677776
No 90
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.21 E-value=3.2e-06 Score=79.75 Aligned_cols=434 Identities=10% Similarity=0.075 Sum_probs=234.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
|..+|+.|++-+..+ -.++++..++++... ++..+..|..-+..-...++++...++|.+.+.. ..+...|...+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 555566666555444 667777777777655 3555666777777777777777777777776654 234444444433
Q ss_pred HHHh-cCChh----HHHHHHHHHHhcCCCCCccccCcHHHHHHHHH---------HHHHcCCHhHHHHHHHHHhhCCCCC
Q 040027 175 GLCR-TGHTM----IALNLFEEMANGNGEIGVVCKPNTVTYSTIID---------GLCKEGFVDKAKALFLQMKDENINP 240 (595)
Q Consensus 175 ~~~~-~g~~~----~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~g~~~~A~~~~~~~~~~~~~~ 240 (595)
---+ .|+.. .-.+.|+-.....+ + -..+...|+..+. -|....+++...++|+++...-+..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig---~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIG---M-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhc---c-CcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2211 22222 22233443333221 0 0112233333332 2333446667777777776542111
Q ss_pred CHhHHH------HHHHH-------HHhcCCHHHHHHHHHHHHHC--CCCCCHh---------------hHHHHHHHHHhc
Q 040027 241 DVVTYN------SLIHG-------LCHANDWNEAKRLFIEMMDQ--GVQPSVV---------------TFNVIMDELCKN 290 (595)
Q Consensus 241 ~~~~~~------~ll~~-------~~~~~~~~~A~~~~~~~~~~--~~~~~~~---------------~~~~l~~~~~~~ 290 (595)
=...|+ .=++. --+...+..|.++++++... |...... .|..+|..-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111221 11111 11234577788887777542 3221111 133333221111
Q ss_pred CC--------hHHHHHHHHHHHHC-CCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCCCHHH
Q 040027 291 RK--------MDEASRLLDLMVQR-GVRPNACTY-----NTLMDGFCLMGK-------INRAEELFGSMESMGCKHDDVS 349 (595)
Q Consensus 291 g~--------~~~a~~~~~~~~~~-~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 349 (595)
+- -....-++++.+.. +..|+.... ......+...|+ -+++..++++....-...+...
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 01122223332221 222222110 111223333343 3556666666554322223334
Q ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040027 350 YNILINGYCKN---KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAA-DTRTYTTFID 425 (595)
Q Consensus 350 ~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 425 (595)
|..+...--.. +..+.....++++......--..+|..++....+..-++.|..+|.++.+.+..+ +..+..+++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 43333321111 2356666777776654322233567777777778888899999999988876555 6667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCCh
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 503 (595)
.|| .++.+-|.++|+--++.- ..++.-....+..+...++-..+..+|++....++.|+ ...|..++..-..-|++
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 666 578888999998766543 45566667778888888999999999999888766665 57899999888889999
Q ss_pred hHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCh
Q 040027 504 DKARDLFLDMEENA---AAPDVITFDMLIHGFIRINEP 538 (595)
Q Consensus 504 ~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 538 (595)
..+.++-+++...- ..+....-..+++-|.-.+.+
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 99888887776531 111112233445555555554
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.1e-07 Score=91.58 Aligned_cols=479 Identities=14% Similarity=0.073 Sum_probs=246.4
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCC--------------C-CCCH
Q 040027 32 FRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATG--------------L-FPNL 96 (595)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~-~~~~ 96 (595)
....=..+.|+--|+.|.|.+--... .+...|..+.+.+.+..+.+-.++..| . .|+
T Consensus 729 Rkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 729 RKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred HHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 33333566778889999998766655 255789999999999999886222222 1 122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
+.--.+.......|.+++|..+|++.... ..|=..|...|.+++|.++-+.-.+.. =..+|......+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHH
Confidence 22233444456779999999999988753 334455677899999998876644332 235677777777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCC-------------ccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-------
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIG-------------VVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE------- 236 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 236 (595)
...++.+.|++.|++.-....+.. .-...+...|.-....+-..|+.+.|+.+|......
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 778889888888876522110000 000123333444444555567777777777665431
Q ss_pred ---C----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--------------
Q 040027 237 ---N----------INPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK-------------- 289 (595)
Q Consensus 237 ---~----------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------- 289 (595)
| -.-|....-.|.+.|-..|++.+|...|.+.... ...|+.|-.
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf---------snAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF---------SNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCHHHHHHHHHhhc
Confidence 0 0112223333455555555555555555443221 111111111
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHh--cCCCCCHHHHHHHHHHHH
Q 040027 290 -NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGS--------MES--MGCKHDDVSYNILINGYC 358 (595)
Q Consensus 290 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~ 358 (595)
..+.-.|.++|++.-- -+......|-+.|.+.+|+++--+ ++. .....|+...+.....+.
T Consensus 1020 ~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1111122222222110 011122334455555554443111 111 122345566666667777
Q ss_pred hCCCHHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHHHccCCHHHHHHHHHHH
Q 040027 359 KNKEVEEALSLYREMVS----------KG----------------IKPTV----VTYNTLFLGLFEIHQVEHALKLFDEM 408 (595)
Q Consensus 359 ~~~~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 408 (595)
...++++|..++-...+ ++ -.|+. ..+..+...|.+.|.+..|.+-|-+.
T Consensus 1092 ~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 77777777665543322 11 12222 23455566777888877776655332
Q ss_pred ----------HHCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----
Q 040027 409 ----------QRDGVA----------ADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCK---- 464 (595)
Q Consensus 409 ----------~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 464 (595)
++.|-. -...+| ++..-|.+.-++.+--++++.+... -.....+..|...|..
T Consensus 1172 GdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cAqi 1248 (1416)
T KOG3617|consen 1172 GDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCAQI 1248 (1416)
T ss_pred hhHHHHHHHHHhcCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHHHh
Confidence 222210 011112 2223344444444444444444321 1122233333333221
Q ss_pred -----------cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-----------hcCChhHHHHHHHHHHHcCCCC--
Q 040027 465 -----------SGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLC-----------NDGQMDKARDLFLDMEENAAAP-- 520 (595)
Q Consensus 465 -----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~-- 520 (595)
.|-.++|-..+.++..++ .....++.|-.-.. -..|....++-...|++...-|
T Consensus 1249 Eiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~ 1326 (1416)
T KOG3617|consen 1249 EIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDI 1326 (1416)
T ss_pred hHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCc
Confidence 233444444444444332 11222322222111 1225555666666666653333
Q ss_pred --CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 521 --DVITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 521 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
-...|..++..+....+|+.|.+.+++|..+-
T Consensus 1327 Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1327 IRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred chhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 24678899999999999999999999999753
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2.5e-07 Score=89.80 Aligned_cols=202 Identities=10% Similarity=-0.024 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCF-TPNAA-TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
.+..|..+...+...|+.+.+...+.+..+... ..+.. ........+...|++++|.+.++++.... +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 455566677777777888887777777666532 11221 22222344567889999999988888763 334434432
Q ss_pred HHHHH----hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHH
Q 040027 173 INGLC----RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSL 248 (595)
Q Consensus 173 ~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 248 (595)
...+. ..+....+.+.++..... .+........+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE-------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 22222 244455555555442111 23334455566677888899999999998888764 3356677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 249 IHGLCHANDWNEAKRLFIEMMDQGVQ-PSV--VTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
...+...|++++|..++++....... ++. ..|..+...+...|++++|..+++++...
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888899999999888887765321 222 23446777888888888888888887543
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.4e-07 Score=89.88 Aligned_cols=264 Identities=11% Similarity=0.016 Sum_probs=158.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLH----AESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
....+...|++++|...++++.+.. |.+...+.. ...+. ..+..+.+.+.++.... ..+........+...+.
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHH
Confidence 3445677899999999999999874 445545442 22222 24555555555554211 11223344456677888
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC-CCCH--hHHHHHHHHHHh
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI-NPDV--VTYNSLIHGLCH 254 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~ 254 (595)
..|++++|...+++..+.. +.+...+..+..++...|++++|...+++...... .++. ..|..+...+..
T Consensus 126 ~~G~~~~A~~~~~~al~~~-------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999976 56677888999999999999999999999877532 1222 345578889999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHhhH-H--HHHHHHHhcCChHHHHHH--H-HHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 040027 255 ANDWNEAKRLFIEMMDQGV-QPSVVTF-N--VIMDELCKNRKMDEASRL--L-DLMVQRGV-RPNACTYNTLMDGFCLMG 326 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~ 326 (595)
.|++++|..++++...... .+..... + .++..+...|....+.++ + ........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 9999999999999864322 1111111 1 223333344433333332 1 11111100 111111224555666777
Q ss_pred CHHHHHHHHHHHHhcCCC---C-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 327 KINRAEELFGSMESMGCK---H-----DDVSYNILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
+.+.|...++.+...... . .........-.+...|++++|.+.+.....
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888877776543211 0 011112223334556677777666666554
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=5.4e-09 Score=98.76 Aligned_cols=250 Identities=17% Similarity=0.104 Sum_probs=161.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHH
Q 040027 285 DELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVE 364 (595)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (595)
.-+.+.|++.+|.-.|+..++.+.. +...|..|.......++-..|+..+++.++.. +.+..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 3456777788888888877776433 66777777777777777778888888887774 445667777777788888777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH----HHH---HHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040027 365 EALSLYREMVSKGIKPTVVTYN----TLF---LGLFEIHQVEHALKLFDEMQR-DGVAADTRTYTTFIDGLCKNGYIIEA 436 (595)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~~~~----~l~---~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 436 (595)
.|+..+++-+...++ -..... ... ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++|
T Consensus 371 ~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888887777654211 000000 000 011112223344444444443 33346777777777777777888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 437 VELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
...|+.++... |.|..+||.|+..++...+.++|+..|+++++ +.|+ +.+...|...|...|.+.+|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888887765 66777888888888888888888888888877 6776 45677777788888888888887776654
Q ss_pred cC---------CCCCHHHHHHHHHHHHHcCChhH
Q 040027 516 NA---------AAPDVITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 516 ~~---------~~~~~~~~~~l~~~~~~~g~~~~ 540 (595)
.. ..++..+|..|=.++...++.+-
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 21 01123455555555555555543
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=9.9e-08 Score=82.63 Aligned_cols=262 Identities=15% Similarity=0.127 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFN-SLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
....+.+..+|....++..|...++++... -|...-|. .-...+.+.+.+..|+.+...|.... ..-......-..
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaA 120 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAA 120 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHH
Confidence 334445555666666666666777666655 33344343 23455566667777777666665420 001111111222
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
...+.+++..+..++++....+ +..+.+...-...+.|+++.|.+-|+...+.+--.....|+.. -++.+
T Consensus 121 IkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~ 190 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYS 190 (459)
T ss_pred HhcccccCcchHHHHHhccCCC---------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHh
Confidence 3335666666666666655322 3444444555556677777777777766654322234445433 34556
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-------------C---------------HhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 255 ANDWNEAKRLFIEMMDQGVQP-------------S---------------VVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~~~~~-------------~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
.+++..|++...+++++|++. | ...+|.-...+.+.|+++.|.+.+-+|.-+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 667777777777776665431 1 122334444556677777777777666543
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 040027 307 G-VRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 372 (595)
Q Consensus 307 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (595)
. ...|+.|...+.-.- ..+++....+-+.-+...+ |....+|..++-.|+++.-++-|..++.+
T Consensus 271 aE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 271 AEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 2 234555554433221 1233444444444444443 34556777777777777777777666543
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.3e-09 Score=98.32 Aligned_cols=236 Identities=16% Similarity=0.041 Sum_probs=149.1
Q ss_pred hhhhhhcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHH
Q 040027 26 SSLLVHFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINC 105 (595)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (595)
++-.-++.+.-.+..+++-|++.+|.-.|+.+++.+|. + .+.|..|..+
T Consensus 280 Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~--h-----------------------------aeAW~~LG~~ 328 (579)
T KOG1125|consen 280 NPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ--H-----------------------------AEAWQKLGIT 328 (579)
T ss_pred CcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChH--H-----------------------------HHHHHHhhhH
Confidence 45555666666777778889999999999999999887 4 4445556666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH---------HHH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI---------NGL 176 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---------~~~ 176 (595)
....++-..|+..++++++.. +.+..+.-.|...|...|.-.+|.+.++..+...++ - .|.... ..+
T Consensus 329 qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-y--~~l~~a~~~~~~~~~~s~ 404 (579)
T KOG1125|consen 329 QAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK-Y--VHLVSAGENEDFENTKSF 404 (579)
T ss_pred hhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-c--hhccccCccccccCCcCC
Confidence 667777778888888888885 456777788888888888888888888887665321 0 000000 001
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 256 (595)
.....+....++|-++....+ ...|+.....|...|.-.|++++|.+.|+.+.... +-|...||.|...+....
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGN 478 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCc
Confidence 111122233444444443331 23566666666666666777777777777666643 225566777777777767
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040027 257 DWNEAKRLFIEMMDQGVQPS-VVTFNVIMDELCKNRKMDEASRLLDLMV 304 (595)
Q Consensus 257 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 304 (595)
+.++|+..|.+.++. +|+ +.+...+.-.|...|.+++|...|-.++
T Consensus 479 ~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 479 RSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 777777777766653 443 2244445556666677776666665544
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.13 E-value=1.5e-05 Score=80.03 Aligned_cols=526 Identities=14% Similarity=0.137 Sum_probs=293.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhH-----HhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTR-----LNATGLFPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
.+..++++.|....+++++.+|+.+..-++.++ .+.+.|+.++. ....-..-|..+...+-.+|.+.|++++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 356789999999999999999994444444444 46788887771 11111223778888888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----------hhHH
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH----------TMIA 185 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A 185 (595)
..+|+++.+. .|+......+..+|.+.+++.+-.++--++.+. ++-++..+-+++..+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999988 566777788888899888876655444444432 34466666677776655321 2235
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHH-HHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFL-QMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
.+.++.+....|. -.+..-...-...+-..|.+++|.+++. ...+.-.+.+...-+.-+..+...++|.+..++
T Consensus 174 ~~m~~~~l~~~gk-----~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 174 EKMVQKLLEKKGK-----IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHhccCCc-----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 6667777665421 1122223334455667889999999984 444443333444555667888889999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHH----------------HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hc
Q 040027 265 FIEMMDQGVQPSVVTFNVIMDE----------------LCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC---LM 325 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~----------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 325 (595)
-.++...|.. | |...+.. +...+..+...+...+...... -..|.+-+.++. ..
T Consensus 249 ~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 249 SSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLI 321 (932)
T ss_pred HHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhccc
Confidence 8888887533 2 2222211 1112223333333333332211 122333333333 45
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHH---HHHHHHHHHccC----
Q 040027 326 GKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT--VVT---YNTLFLGLFEIH---- 396 (595)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~---~~~l~~~~~~~~---- 396 (595)
|+.+++...|-+-. |-.| .+..=+..|...=..+.-..++........... ... +...+..-...|
T Consensus 322 gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 322 GDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred CChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 77777655443322 2112 222223333333333333444444333211100 000 011111111112
Q ss_pred -CHHHHHHHHHHHH---HCC------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcCHHH
Q 040027 397 -QVEHALKLFDEMQ---RDG------VAADT---------RTYTTFIDGLCKNGYII---EAVELFRTLRILKCELDIQA 454 (595)
Q Consensus 397 -~~~~a~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 454 (595)
.-+....++.+.. +.| .-|+. -+.+.++..+.+.++.. +|+-+++...... +.|..+
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~ 475 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQT 475 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHH
Confidence 1122222222221 111 12222 23456677788877765 4555555555544 556777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV-ITFDMLIHGFI 533 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 533 (595)
--.++..|.-.|-+..|.++|..+.-+.+..|...| .+..-+...|++..+...+......- ..+. .+-.....+ .
T Consensus 476 KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy-~~~~kE~~eyI~~A-Y 552 (932)
T KOG2053|consen 476 KLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFY-DSSLKETPEYIALA-Y 552 (932)
T ss_pred HHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHH-hhhhhhhHHHHHHH-H
Confidence 778899999999999999999988765555444333 23345566788888888887776531 1111 222223333 4
Q ss_pred HcCChhHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCccc---ccchHHHHhhhhcccccc
Q 040027 534 RINEPSKVNELL---HKMKEKKVMPDASIVSIVVDLLVKNEISL---KSLPSFLVQERQGEVGES 592 (595)
Q Consensus 534 ~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~~i~~~~~~~~~~~~~~~ 592 (595)
+.|.+++..++. +++....-.--..+-+..++.+...++.+ +.+..|..++.-+++++.
T Consensus 553 r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I~w~ 617 (932)
T KOG2053|consen 553 RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRIQWV 617 (932)
T ss_pred HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhcccc
Confidence 667776655443 23321111122445566777788888877 556666666666666653
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=1.1e-06 Score=85.66 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 040027 319 MDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV 398 (595)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 398 (595)
+.+.....+|.+|+.+++.+... +.-..-|..+...|...|+++.|.++|.+.- .++..+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 44445556667777777666654 2233345556666677777777776665431 234455666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 040027 399 EHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSL 478 (595)
Q Consensus 399 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 478 (595)
+.|.++-.+... .......|..-..-+-++|++.+|.++|-.+- .|+. .+.+|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 776666555432 23333444444444556666666666554332 2332 244555555555555554442
Q ss_pred ccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 479 PHGVLVPN--VVTYNIMIQGLCNDGQMDKARDLFLD 512 (595)
Q Consensus 479 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (595)
- |+ ..|...+..-|-..|+...|...|-+
T Consensus 877 h-----~d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 877 H-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred C-----hhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 2 12 23333444444455555555544433
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=1.8e-06 Score=95.00 Aligned_cols=338 Identities=12% Similarity=0.014 Sum_probs=216.1
Q ss_pred HHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HhhHHHHHHH
Q 040027 215 DGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV------QPS--VVTFNVIMDE 286 (595)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------~~~--~~~~~~l~~~ 286 (595)
......|+++.+..+++.+.......+..........+...|+++++..++......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211111222333445566788999999999987754311 111 1122233456
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHH
Q 040027 287 LCKNRKMDEASRLLDLMVQRGVRPNA----CTYNTLMDGFCLMGKINRAEELFGSMESMGC---KHD--DVSYNILINGY 357 (595)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~ 357 (595)
+...|++++|...++.........+. .....+...+...|+++.|...+.+...... .+. ...+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763111121 2345566677889999999999988764311 111 23455667788
Q ss_pred HhCCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 040027 358 CKNKEVEEALSLYREMVSK----GIK--P-TVVTYNTLFLGLFEIHQVEHALKLFDEMQRD--GVAA--DTRTYTTFIDG 426 (595)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~ 426 (595)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998886652 211 1 1223445556677789999999999887653 1112 12334445667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc-CHHHH-----HHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHH
Q 040027 427 LCKNGYIIEAVELFRTLRILKCEL-DIQAY-----NCLIDGLCKSGRLKFAWELFCSLPHGVLVPN---VVTYNIMIQGL 497 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 497 (595)
+...|++++|...+.++....... ....+ ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998886431111 11111 1122444568999999999887665211111 11235667788
Q ss_pred HhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 498 CNDGQMDKARDLFLDMEEN----AAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
...|++++|...++++... |...+ ..+...+..++...|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998763 32222 2456677888999999999999999998653
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.9e-06 Score=82.96 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=143.9
Q ss_pred CHhhHHHHHH--HHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCCCHHHH
Q 040027 66 PVSSFNILLA--SLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSC---------FTPNAATF 134 (595)
Q Consensus 66 ~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~ 134 (595)
|+.+-..++. .|..-|+-+.....-.+--+-.+|..+...|.+..+++-|.-.+..|.... -.++ ..-
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~e 803 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDE 803 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chh
Confidence 4444444432 344445544422222233467889999999999998888877766554321 0111 222
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHH
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTII 214 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 214 (595)
..+.......|.+++|..+|++..+. ..|-..|...|.|++|+++-+.--+.. -..+|....
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA 865 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYA 865 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHH
Confidence 23334456779999999999998864 345567778999999998866543321 235666677
Q ss_pred HHHHHcCCHhHHHHHHHHHhhC----------C---------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040027 215 DGLCKEGFVDKAKALFLQMKDE----------N---------INPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP 275 (595)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~~~~~----------~---------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 275 (595)
.-+-..+|.+.|++.|++.... . -..+...|.-....+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777788999999888765321 0 011333444445555566777777777765543
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 276 SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
|..+++..+-+|+.++|.++-++- -|......+.+.|...|++.+|..+|.+.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334445555566666666554432 14445555666666667766666666554
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.1e-06 Score=96.57 Aligned_cols=337 Identities=11% Similarity=-0.011 Sum_probs=214.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC------CCC--HhHHH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI------NPD--VVTYN 246 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~ 246 (595)
.+...|++..+...++.+.... ...++.........+...|+++++..+++.....-- .+. .....
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEV------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHH------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 3445677777666666542211 011222334445556678999999999987754310 111 11222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHH
Q 040027 247 SLIHGLCHANDWNEAKRLFIEMMDQGVQPSV----VTFNVIMDELCKNRKMDEASRLLDLMVQR----GVR-PNACTYNT 317 (595)
Q Consensus 247 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 317 (595)
.+...+...|++++|...++.....-...+. ...+.+...+...|++++|...+++.... |.. ....+...
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 3345667899999999999988763111121 23455666788899999999999888753 111 11234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC--CHHHHH
Q 040027 318 LMDGFCLMGKINRAEELFGSMESM----GCKH---DDVSYNILINGYCKNKEVEEALSLYREMVSKG--IKP--TVVTYN 386 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~ 386 (595)
+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+++..... ..+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 677888999999999998886542 2111 12234456667778899999999998876531 111 233444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---HHHHHH
Q 040027 387 TLFLGLFEIHQVEHALKLFDEMQRDG--VAADTR--T--YTTFIDGLCKNGYIIEAVELFRTLRILKCELD---IQAYNC 457 (595)
Q Consensus 387 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 457 (595)
.+...+...|+++.|...+....... ...... . ....+..+...|+.+.|..++........... ...+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56667788999999999998875421 111111 1 11122445568999999999877654221111 112356
Q ss_pred HHHHHHhcCChHHHHHHHHhcccC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 040027 458 LIDGLCKSGRLKFAWELFCSLPHG----VLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENA 517 (595)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (595)
+..++...|++++|...++++... +..++ ..+...+..++...|+.++|...+.++.+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777888999999999999987652 22222 3456677788899999999999999998864
No 102
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=4e-10 Score=72.78 Aligned_cols=49 Identities=41% Similarity=0.867 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 485 PNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 485 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=9.9e-09 Score=93.88 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=75.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH----hcC
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC----KSG 466 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 466 (595)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.+.+.+ .| .+...+..++. ...
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455666555554321 234445555556666666666666666665432 22 22222332222 122
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHH
Q 040027 467 RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEP-SKVNELL 545 (595)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 545 (595)
.+.+|.-+|+++.+. ..+++.+.+.++.++...|++++|.+++.++.+.+ +.++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665543 34555666666666666666666666666665543 33455555555555566655 4455566
Q ss_pred HHHHH
Q 040027 546 HKMKE 550 (595)
Q Consensus 546 ~~~~~ 550 (595)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 65554
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=2.8e-06 Score=75.40 Aligned_cols=320 Identities=10% Similarity=0.023 Sum_probs=184.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHh-hHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVI-TYNTL 172 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 172 (595)
.++.-...+...+...|++.+|+.-|-.+++.. +.+-.++..-...|...|+..-|+.=+++.++. .||-. +...-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 356667778888888899999999998888763 222233344456688888888888888888876 55533 23344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHH------------HHHHHHHHcCCHhHHHHHHHHHhhCCCCC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYS------------TIIDGLCKEGFVDKAKALFLQMKDENINP 240 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 240 (595)
...+.++|++++|..-|+.+++.+...+ .....+. ..+..+...||...|++....+.+.. +.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~----~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNG----LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 5667788999999999988887652111 0111111 11222333455555555555555432 33
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 241 DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMD 320 (595)
Q Consensus 241 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 320 (595)
+...|..-..+|...|++..|+.-++...+... .+...+..+...+...|+.+.++...++.++. .||......
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~--- 261 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP--- 261 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---
Confidence 455555555555555555555555444443321 23344444444555555555555555555543 233221110
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCC
Q 040027 321 GFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV---VTYNTLFLGLFEIHQ 397 (595)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 397 (595)
.|-+ +.+....++. +......++|-++++..+...+..+.... ..+..+-.++...++
T Consensus 262 ~YKk---lkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 262 FYKK---LKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHH---HHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 0000 0111111111 12234456677777777777765433112 233445556667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040027 398 VEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILK 447 (595)
Q Consensus 398 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 447 (595)
+.+|++...+++... +.|..++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 323 ~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888888887652 3447778778888888888888888888888765
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.04 E-value=1.9e-05 Score=74.67 Aligned_cols=432 Identities=11% Similarity=0.089 Sum_probs=261.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT 207 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
+-|..+|+.|++-+..+ .++++.+.++++... ++-....|...+.......+++....+|.+-+..- .+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--------Lnl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--------LNL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------hhH
Confidence 77999999999987766 999999999999876 35567889999999999999999999999988643 557
Q ss_pred HHHHHHHHHHHH-cCCHhH----HHHHHHHHhh-CCCCC-CHhHHHHHHHH---------HHhcCCHHHHHHHHHHHHHC
Q 040027 208 VTYSTIIDGLCK-EGFVDK----AKALFLQMKD-ENINP-DVVTYNSLIHG---------LCHANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 208 ~~~~~l~~~~~~-~g~~~~----A~~~~~~~~~-~~~~~-~~~~~~~ll~~---------~~~~~~~~~A~~~~~~~~~~ 271 (595)
..|..-++.-.+ .|+... ..+.|+-... .|+.+ +...|+..+.. +..+.+.+...++|++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 777776654333 233333 2334444333 34322 23345444432 33445677788888888764
Q ss_pred CCCCCHhhHHH------HHHHH-------HhcCChHHHHHHHHHHHH--CCCCCC------HHH---------HHHHHHH
Q 040027 272 GVQPSVVTFNV------IMDEL-------CKNRKMDEASRLLDLMVQ--RGVRPN------ACT---------YNTLMDG 321 (595)
Q Consensus 272 ~~~~~~~~~~~------l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~------~~~---------~~~l~~~ 321 (595)
.+.-=...|+. -++.. -+...+..|.++++++.. .|.... ..| |..+|.-
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 22211112221 12111 133456677777777754 232211 111 2222221
Q ss_pred HHhcCCHH---------HHHHHHHHHH-hcCCCCCHHHHHHHH-------HHHHhCCC-------HHHHHHHHHHHHHCC
Q 040027 322 FCLMGKIN---------RAEELFGSME-SMGCKHDDVSYNILI-------NGYCKNKE-------VEEALSLYREMVSKG 377 (595)
Q Consensus 322 ~~~~~~~~---------~a~~~~~~~~-~~~~~~~~~~~~~l~-------~~~~~~~~-------~~~A~~~~~~~~~~~ 377 (595)
-+.+-.. ...-++++.. -.+. .+..|.... ..+...|+ -+++..+++..+..-
T Consensus 247 -EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~--~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 247 -EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY--HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred -HhcCCcccccccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 1111111 1111222221 1222 222222211 12333333 456666666665532
Q ss_pred CCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHH
Q 040027 378 IKPTVVTYNTLFLGLFEI---HQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCEL-DIQ 453 (595)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 453 (595)
..-+..+|..+...-... ...+.....+++++......-.-+|..++..-.+...+..|..+|.++.+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 222333333333221111 1356666677776654222223456777777778888999999999999876665 677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 040027 454 AYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD--VITFDMLIHG 531 (595)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 531 (595)
+..+++..|+ .++.+.|.++|+-=... ...++.-....+..+...++-..|..+|++.+..+++++ ..+|..++.-
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 7777777665 68889999999875553 233445556777888889999999999999998866665 4688988888
Q ss_pred HHHcCChhHHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcCccc
Q 040027 532 FIRINEPSKVNELLHKMKEK-K--VMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
=..-|+...+.++-+++... . ..+.......+++-|.=.|.+.
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 88889999999998888753 1 2233445566677676666665
No 106
>PF13041 PPR_2: PPR repeat family
Probab=99.04 E-value=8.9e-10 Score=71.14 Aligned_cols=50 Identities=30% Similarity=0.602 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 520 PDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||..++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.3e-05 Score=79.42 Aligned_cols=325 Identities=14% Similarity=0.154 Sum_probs=186.4
Q ss_pred HhhCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 040027 87 LNATGLF--PNLYTYNILINCFCKIGRVSLGFIAFGRILRSC--FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGC 162 (595)
Q Consensus 87 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 162 (595)
.+..+++ .||+.-+..+.++...+-..+.++++++++-.+ +.-+...-+.++-...+ -+..+..+..+++...+.
T Consensus 973 Vv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa 1051 (1666)
T KOG0985|consen 973 VVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA 1051 (1666)
T ss_pred HHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc
Confidence 3344443 577777788888888888888888888877542 11222333444433333 334556666666655431
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCH
Q 040027 163 EPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDV 242 (595)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 242 (595)
+ .+.......+-+++|+.+|++.. .+..+.+.|+.- -+..+.|.+.-++.- .+
T Consensus 1052 ~-------~ia~iai~~~LyEEAF~ifkkf~-----------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1052 P-------DIAEIAIENQLYEEAFAIFKKFD-----------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred h-------hHHHHHhhhhHHHHHHHHHHHhc-----------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------Ch
Confidence 1 23445556677778888877653 344555555443 355666666555442 45
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 243 VTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 243 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++....+..-.|... ..++-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 67888888888888888887776443 366677888888888888888888887777765555443 3567777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 040027 323 CLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHAL 402 (595)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 402 (595)
++.++..+.++++. .|+......+..-|...+.++.|.-+|.. +..|..+...+...|++..|.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHH
Confidence 77777666554431 24444444445555555555555444432 222333444444444444433
Q ss_pred HHHHH------------------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 040027 403 KLFDE------------------------MQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCL 458 (595)
Q Consensus 403 ~~~~~------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 458 (595)
..-++ |-..++-....-...++..|...|-+++.+.+++..+... ......|+.+
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTEL 1319 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTEL 1319 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHH
Confidence 32221 2222223334445556666666666666666666655332 2334455555
Q ss_pred HHHHHh
Q 040027 459 IDGLCK 464 (595)
Q Consensus 459 ~~~~~~ 464 (595)
.-.|.+
T Consensus 1320 aiLYsk 1325 (1666)
T KOG0985|consen 1320 AILYSK 1325 (1666)
T ss_pred HHHHHh
Confidence 555544
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=3e-08 Score=90.75 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=137.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 103 INCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
++.+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344555678887776666 222221223334455667777777766543 3332222 45555554444444333444
Q ss_pred hHHHHHHHHHHhcCCCCCcccc-CcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040027 183 MIALNLFEEMANGNGEIGVVCK-PNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEA 261 (595)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 261 (595)
+.++.-+++..... .. .+.........++...|++++|.+++... .+.......+..|.+.++++.|
T Consensus 83 e~~l~~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 83 ESALEELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp HCHHHHHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 45555444433322 11 22222223334455567777777766543 2566666667777778888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 262 KRLFIEMMDQGVQPSVVTFNVIMDELC----KNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGS 337 (595)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (595)
.+.++.|.+. ..| .+...+..++. ....+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+
T Consensus 151 ~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8887777664 222 33333433332 233577777777776654 455667777777777777777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 040027 338 MESMGCKHDDVSYNILINGYCKNKEV-EEALSLYREMVSK 376 (595)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 376 (595)
....+ +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 76554 34555666666666666665 4555666666553
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=4.7e-07 Score=88.32 Aligned_cols=233 Identities=14% Similarity=0.102 Sum_probs=181.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 314 TYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLF 393 (595)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (595)
.-..+...+...|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +|++..|..+.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34556777888888899998887754 5777889999999999999998888874 678888888888777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 040027 394 EIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWE 473 (595)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (595)
...-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|..
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777778888887765432 11122222334789999999999988876 7778899999999999999999999
Q ss_pred HHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 474 LFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 474 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
.|..... +.|| ...||++..+|.+.|+..+|...+.++.+-+ ..+...|........+.|.+++|.+.+.++.+..
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999988 6776 5799999999999999999999999999876 5566677777777889999999999999998532
Q ss_pred C-CCCHHHHHHHHHHHH
Q 040027 553 V-MPDASIVSIVVDLLV 568 (595)
Q Consensus 553 ~-~p~~~~~~~l~~~~~ 568 (595)
. ..|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 1 125555555544443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.8e-06 Score=90.18 Aligned_cols=214 Identities=10% Similarity=0.041 Sum_probs=148.2
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 040027 87 LNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSC-FTP---NAATFNSLIKGLHAESRIMEAAALFTKLKAFGC 162 (595)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 162 (595)
+.-.+-+-+...|...+..+...++.+.|+.++++++..- +.- -...|.++++.-..-|.-+...++|+++.+.
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-- 1526 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-- 1526 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--
Confidence 3334445577888888888888999999999999888752 111 2335666666666667777777888887765
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCC-CC
Q 040027 163 EPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENIN-PD 241 (595)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 241 (595)
--.-.+|..|...|.+.+++++|.++|+.|.+.- ......|...+..+.++++.+.|..++.+..+.-.+ -.
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 2234556777778888888888888888887763 345677888888888888888888888777664111 02
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040027 242 VVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRP 310 (595)
Q Consensus 242 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 310 (595)
.......+..-.+.|+.+.+..+|+..+.. .+--...|+.++..-.+.|+.+.+..+|+++...++.+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333344455566778888888888777765 22345677778887788888888888888877766554
No 111
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=7.4e-06 Score=76.21 Aligned_cols=216 Identities=10% Similarity=0.045 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES-RIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
.++..+-..+...++.++|+.+.+++++.. +-+..+|+.-...+...| ++++++..++++..... -+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 344555556666788888999988888874 445667776666666666 57888888888887643 355667766555
Q ss_pred HHhcCCh--hHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 176 LCRTGHT--MIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 176 ~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
+.+.|+. ++++..++++.+.+ +.+..+|....-++...|+++++++.++++++.++. +...|+.....+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 5566653 66788888888776 567788888888888888888888888888877543 6666766655554
Q ss_pred hc---CC----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 254 HA---ND----WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKN----RKMDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 254 ~~---~~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
+. |. .++.+....+++... +-+...|+.+...+... +...++...+.+..+.++ .+...+..++..|
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~ 265 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLL 265 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHH
Confidence 43 22 245666665666542 23566676666666552 334556666666655432 2455566666666
Q ss_pred Hh
Q 040027 323 CL 324 (595)
Q Consensus 323 ~~ 324 (595)
+.
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 54
No 112
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=4.1e-06 Score=77.88 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH--HHH
Q 040027 325 MGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK-EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV--EHA 401 (595)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 401 (595)
.+..++|+..+.++++.+ +.+..+|+....++...+ ++++++..++++.+..++ +..+|..-...+.+.++. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 344555555555555543 233344554444455555 456666666666655433 334444444344444432 455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCh----HHHHHH
Q 040027 402 LKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS---GRL----KFAWEL 474 (595)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 474 (595)
...++.+++.+ +-+..+|.....++...|+++++++.++++++.+ +.+..+|+....++.+. |.. ++++.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66666666543 4455666666666666666777777777766655 44555666555554443 222 345666
Q ss_pred HHhcccCCCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------------
Q 040027 475 FCSLPHGVLVP-NVVTYNIMIQGLCND----GQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN------------- 536 (595)
Q Consensus 475 ~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 536 (595)
..+++. ..| |...|+.+...+... ++..+|.+.+.+..+.+ +.+......|++.|+...
T Consensus 206 ~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 206 TIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 655555 234 456677666666652 33456777777766643 345566677777776532
Q ss_pred -----ChhHHHHHHHHHH
Q 040027 537 -----EPSKVNELLHKMK 549 (595)
Q Consensus 537 -----~~~~A~~~~~~~~ 549 (595)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2356777777774
No 113
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=2.5e-05 Score=76.56 Aligned_cols=316 Identities=17% Similarity=0.155 Sum_probs=168.4
Q ss_pred hHHHHHHHHHcCCCchh--HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040027 69 SFNILLASLAKNKHYDT--RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESR 146 (595)
Q Consensus 69 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 146 (595)
.-++.++++...|.... ++.... .| -.+.|+.|.+.|.+..|.+....=... ..|......+..++.+..-
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk~sd--gd---~laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELKESD--GD---GLAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhcccc--Cc---cHHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHH
Confidence 45567778888887665 222111 11 235678899999988887665432222 3456666666666666555
Q ss_pred HhHHHHHHHHHHhc----------------------CCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccc
Q 040027 147 IMEAAALFTKLKAF----------------------GCEPNVITY-NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVC 203 (595)
Q Consensus 147 ~~~A~~~~~~~~~~----------------------~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (595)
++.|-.+|+++... .++...... ......+.+.|+++.|+.-|-+..
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------- 733 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------- 733 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------
Confidence 66666666655431 001000000 111222233333333333332221
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVI 283 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 283 (595)
.....+.+......+.+|+.+++.+..... -..-|..+...|...|+++.|.++|.+. ..++..
T Consensus 734 -----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 122234445555667777777776665432 2334555666777777777777776442 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 284 MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 284 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
+.+|.+.|++++|.++-.+.. |.......|..-..-.-..|++.+|.++|-.+. .|+ ..|.+|-+.|..
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ 866 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLD 866 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcc
Confidence 667777777777777665543 223344445444555556677777766653332 222 235667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELF 440 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 440 (595)
+..+++..+-... .-..|...+..-+...|+...|...|-+..+ |...+.+|...+-+++|.++-
T Consensus 867 ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 867 DDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 7766666553321 1234455556666667777777666544322 334444555555555555443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=3.7e-07 Score=78.28 Aligned_cols=178 Identities=14% Similarity=0.030 Sum_probs=116.3
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh---HHh--hCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT---RLN--ATGLFPNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
.+...+...+-+....+|. +... ..+...+.-.|+.+. .+. ....+.|.......+....+.|++..|+..+
T Consensus 47 ~q~~~a~~al~~~~~~~p~--d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPE--DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HhhhHHHHHHHHHHhcCcc--hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344466666666666676 4444 555666666666555 111 1223345556666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 040027 120 GRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEI 199 (595)
Q Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 199 (595)
+++.... ++|...|+.+..+|.+.|++++|...|.+..+.. .-++...+.+.-.+.-.|+.+.|..++.......
T Consensus 124 rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--- 198 (257)
T COG5010 124 RKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--- 198 (257)
T ss_pred HHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---
Confidence 7777664 6677777777777777777777777777777663 3356666777777777777777777777776654
Q ss_pred CccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHh
Q 040027 200 GVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMK 234 (595)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 234 (595)
+.+...-..+.......|+++.|..+...-.
T Consensus 199 ----~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 199 ----AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred ----CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 3356666677777777777777776665443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=8.2e-07 Score=76.75 Aligned_cols=123 Identities=13% Similarity=0.079 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHH-HhcCC--hhH
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGL-CNDGQ--MDK 505 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~ 505 (595)
.++.+++...+++.++.+ +.+...|..++..|...|++++|...|++... +.| +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455666666677666655 66777777777777777777777777777776 344 456666666653 55565 477
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 040027 506 ARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDA 557 (595)
Q Consensus 506 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 557 (595)
|.++++++++.+ +.+...+..++..+...|++++|...|+++++.. +|+.
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 777777777764 4456677777777777777777777777777643 3443
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=3.4e-06 Score=71.76 Aligned_cols=187 Identities=13% Similarity=0.127 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040027 361 KEVEEALSLYREMVSK---G-IKPTVV-TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIE 435 (595)
Q Consensus 361 ~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 435 (595)
.+.++.++++..+... | ..++.. .+..++-+....|+.+.|..+++.+... ++.+..+...-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 3455555555555432 2 222322 3344445555666666666666666655 34344333333333445666777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 436 AVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 436 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
|.++++.+++.+ |.|..++..=+...-..|+.-+|++-+....+. +.-|...|..+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777666655 555566655555555666666666666666554 344666777777777777777777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHC
Q 040027 516 NAAAPDVITFDMLIHGFIRIN---EPSKVNELLHKMKEK 551 (595)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 551 (595)
.. |-++..|..+...+.-.| +++-+.++|.+.++.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 43 445555566666655544 445666666666653
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=3.6e-06 Score=87.97 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040027 279 TFNVIMDELCKNRKMDEASRLLDLMVQR-GVRP---NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILI 354 (595)
Q Consensus 279 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (595)
.|-..|......++.+.|.++.++++.. ++.- -...|.++++.-...|.-+...++|+++.+.. .....|..|.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHH
Confidence 4444444455555555555555554432 1100 11233344444334444444444555444431 1223444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 040027 355 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAA--DTRTYTTFIDGLCKNGY 432 (595)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 432 (595)
..|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.++++. .+. ........+..-.+.|+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcCC
Confidence 44555555555555555544431 123344444444444444444444444444432 111 11222233333334444
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 040027 433 IIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG 481 (595)
Q Consensus 433 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 481 (595)
.+.+..+|+..+... |.....|+.+++.-.++|+.+.++.+|+++...
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 444444444444332 333344444444444444444444444444443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=1.2e-06 Score=75.21 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=107.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 040027 386 NTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS 465 (595)
Q Consensus 386 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (595)
..+...+...|+-+....+....... .+.+.......+....+.|++..|...++++.... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555566666666666665554432 24455556666777777777777777777777665 67777777777777777
Q ss_pred CChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040027 466 GRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNEL 544 (595)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 544 (595)
|+++.|..-|.+..+ +.|+ +..++.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777777777776 4443 5666777777777777777777777777654 33555666677777777777777776
Q ss_pred HHHHH
Q 040027 545 LHKMK 549 (595)
Q Consensus 545 ~~~~~ 549 (595)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 55544
No 119
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.82 E-value=0.00024 Score=71.76 Aligned_cols=122 Identities=15% Similarity=0.034 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLK---FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHG 531 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (595)
.+.+++.+.+.++.. +|+-+++.-... -+-|..+-..+++.|.-.|-+..|.++|..+--+++.-|...|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 456778888888865 455555555542 12245556678899999999999999999987666666654443 3455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccchH
Q 040027 532 FIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKSLPS 579 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~i~~ 579 (595)
+...|++..+...+...... +..+-.-..-++..-.+.|.++++.+-
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEM 563 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHH
Confidence 66788999999888888763 223333344455556677888854443
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=2.3e-06 Score=77.43 Aligned_cols=187 Identities=8% Similarity=-0.085 Sum_probs=133.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHh--
Q 040027 93 FPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA---ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVI-- 167 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 167 (595)
...+..+..++..+...|+++.|...|+++.... +.+. .++..+..++.+.|++++|+..++++.+.... +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH
Confidence 4577888889999999999999999999998874 2222 46778889999999999999999999987432 222
Q ss_pred -hHHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC
Q 040027 168 -TYNTLINGLCRT--------GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI 238 (595)
Q Consensus 168 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 238 (595)
++..+..++... |++++|.+.|+++.... |.+...+..+...... .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~----~~------~~----- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYL----RN------RL----- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHH----HH------HH-----
Confidence 456666666654 78899999999998865 3333333222211110 00 00
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 239 NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV--QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 239 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
......+...+.+.|++++|...+...++... +.....+..+..++...|++++|..+++.+...
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122456678888999999999988887521 123467788888999999999999988887765
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=4.7e-07 Score=88.30 Aligned_cols=216 Identities=13% Similarity=0.091 Sum_probs=179.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040027 280 FNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 359 (595)
Q Consensus 280 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (595)
-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+. +|++..|..+......
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3456778889999999999998764 4566788999999999999999988875 7899999999888877
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 360 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVEL 439 (595)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 439 (595)
..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|....-+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77789999888765332 22233333455789999999999888764 56778888888889999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 440 FRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
|....... +.+...||++-.+|.+.++-.+|...+.++.+.+ .-+...|.+.+....+.|.+++|++.+.++.+.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99998875 6678899999999999999999999999999876 446678888888899999999999999998763
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=2.2e-06 Score=77.45 Aligned_cols=187 Identities=10% Similarity=-0.019 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccc
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN---VITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCK 204 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 204 (595)
+.....+..+...+...|++++|...|+++...... + ..++..+..++...|++++|+..++++.+.. |
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------P 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------c
Confidence 345667888888999999999999999999886322 2 2467888999999999999999999999865 2
Q ss_pred CcH---HHHHHHHHHHHHc--------CCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040027 205 PNT---VTYSTIIDGLCKE--------GFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV 273 (595)
Q Consensus 205 ~~~---~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 273 (595)
.+. .++..+..++... |+.++|.+.|+.+...... +...+..+..... ... ..
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~----- 165 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL----- 165 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH-----
Confidence 222 2466666666654 7788999999998876321 2223322221111 000 00
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040027 274 QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGV--RPNACTYNTLMDGFCLMGKINRAEELFGSMESM 341 (595)
Q Consensus 274 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 341 (595)
......+...+.+.|++.+|...++.+.+... +.....+..++.++...|++++|..+++.+...
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122566778999999999999999988632 224568889999999999999999999988765
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=7.9e-06 Score=84.75 Aligned_cols=220 Identities=9% Similarity=0.069 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC---------
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP--------- 164 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 164 (595)
.+...|..|+..+...|++++|..+.+...+.. +.....|-.+...+.+.++.+.+.-+ .+... +..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 467788888888888899999999988777763 22333343343456666666655544 22221 011
Q ss_pred ----------CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHh
Q 040027 165 ----------NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMK 234 (595)
Q Consensus 165 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 234 (595)
+..++..++.+|-+.|+.++|..+++++.+.+ +.|+.+.|.+...|... ++++|.+++.+.+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 12344555555555566666666666666554 34555556665555555 5666665555554
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 040027 235 DENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR-GVRPNAC 313 (595)
Q Consensus 235 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 313 (595)
.. +...+++..+.++|.++..... .+++.-..+.+.+... |..--..
T Consensus 177 ~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 177 YR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhhccchhHH
Confidence 42 3444455555555555544311 1122222223333222 2222334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 040027 314 TYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYC 358 (595)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (595)
++..+-..|...++++++..+++.+.+.. +.|..+...++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 45555566777778888888888888775 445566777777765
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1e-06 Score=76.14 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HhHHHHHHHHHHhcCCCCCHhhHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGL-HAESR--IMEAAALFTKLKAFGCEPNVITYNT 171 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (595)
|+..|..+...|...|++++|...|+++.+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 67777788888889999999999999999986 55788888888764 66677 58999999999988633 7888899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
+...+...|++++|+..++++.+..
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999998876
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=1.1e-06 Score=71.75 Aligned_cols=112 Identities=10% Similarity=-0.059 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
++..+..+...+...|++++|...|++++... +.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34345567778899999999999999999885 5688899999999999999999999999999875 458889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIID 215 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (595)
++...|++++|+..|+...... +.++..+.....
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~-------p~~~~~~~~~~~ 134 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS-------YADASWSEIRQN 134 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHH
Confidence 9999999999999999999875 445555544433
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=2e-05 Score=81.81 Aligned_cols=239 Identities=10% Similarity=0.098 Sum_probs=127.3
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVI 283 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 283 (595)
+.+...+..|+..+...+++++|.++.+...... +-....|-.++..+.+.++.+++..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 4446667777777777777777777777555542 11233333333455555554443333 1 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 284 MDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 284 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
+.......++..+..++..+... ..+...+..++.+|-+.|+.+++..+++++++.+ +.++.+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22222233333333333344432 2233456666777777777777777777777665 55666777777777766 77
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTL 443 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 443 (595)
++|.+++.+++.. +...+++..+..+|.++.... +.+...+..+.+ .+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~----------------ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIER----------------KV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHH----------------HH
Confidence 7777776665543 445556667777777766652 222222222221 12
Q ss_pred HHc-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHH
Q 040027 444 RIL-KCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLC 498 (595)
Q Consensus 444 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 498 (595)
... +...-..++..+...|...++++++..+++.+++. .| |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 111 11222344445555566666677777777777663 33 3444555555554
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=2.4e-06 Score=69.82 Aligned_cols=93 Identities=11% Similarity=-0.090 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
+..+...+...|++++|...|+.+.. +.| +...|..+..++...|++++|+..|+++.+.+ +.+...+..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33445555566666666666666655 233 34555666666666666666666666666543 445555666666666
Q ss_pred HcCChhHHHHHHHHHHH
Q 040027 534 RINEPSKVNELLHKMKE 550 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~ 550 (595)
..|++++|...|++..+
T Consensus 104 ~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666665
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=4.7e-05 Score=65.60 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 251 GLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK----NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMG 326 (595)
Q Consensus 251 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (595)
.+.+..+++-|.+.+++|.+. .+..+.+.+..++.+ .+.+.+|.-+|+++-+. .+|+..+.+..+.++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344444455555555555442 133333333333322 22344444444444443 3344444444444444445
Q ss_pred CHHHHHHHHHHHHhc
Q 040027 327 KINRAEELFGSMESM 341 (595)
Q Consensus 327 ~~~~a~~~~~~~~~~ 341 (595)
++++|..+++.....
T Consensus 222 ~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 222 RYEEAESLLEEALDK 236 (299)
T ss_pred CHHHHHHHHHHHHhc
Confidence 555555555444443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=2e-05 Score=81.09 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 040027 381 TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLID 460 (595)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 460 (595)
+...+..|.....+.|.+++|..+++.+.+.. |-+......++..+.+.+++++|...+++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 56666666667777777777777777776652 3334455556666667777777777777776655 555666666666
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFD 526 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 526 (595)
++...|++++|..+|+++... .| +..++..+..++...|+.++|...|+++.+.. .+....|+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 777777777777777777652 23 35666666677777777777777777776652 33444444
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=9.5e-05 Score=63.76 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=41.9
Q ss_pred HHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 040027 215 DGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKN 290 (595)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (595)
.++.+..+++-|.+.+++|.+.. +..+.+.|..++.+ .+...+|.-+|++|-+. .+|+..+.+-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 33444445555555555555432 33344444443332 23345555555555432 344444555555555555
Q ss_pred CChHHHHHHHHHHHHC
Q 040027 291 RKMDEASRLLDLMVQR 306 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~ 306 (595)
|++++|..+++.++..
T Consensus 221 ~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDK 236 (299)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5555555555555544
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=1.9e-05 Score=81.29 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.++..+..|.+...+.|++++|..+++.+.+.. |-+...+..++..+.+.+++++|...+++..... +-+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 344444444444444555555555555544442 2223333444444444455555555544444442 11333444444
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
.++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555444422 22344444444444444555555554444443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=3e-06 Score=68.96 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 451 DIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
+......++..+...|++++|...|+.+...+ +.+...|..+..++...|++++|...+++..+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34445555566666666666666666665521 2245566666666666666666666666666553 444556666666
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 040027 531 GFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+|...|++++|...+++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666653
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00014 Score=62.26 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHC---C-CCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040027 257 DWNEAKRLFIEMMDQ---G-VQPSVV-TFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRA 331 (595)
Q Consensus 257 ~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 331 (595)
+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+... ++-+..+...-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 445555555554432 2 223332 2334444555666666666666666655 232333333333344456666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 332 EELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
+++++.+++.+ |.|..++..-+...-..|+.-+|++-+.+..+.. ..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66666666654 4444455544444455555556666666655542 336666666666666666666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 040027 412 GVAADTRTYTTFIDGLCKNG---YIIEAVELFRTLRILK 447 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 447 (595)
. |.++..+..+...+.-.| +.+-+.+.|.+.++..
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 2 333333444444433222 4455566666666543
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.0001 Score=69.27 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=98.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (595)
...+...|+++.|+..+..+++. .+.++.......+.+.+.++.++|.+.++++.... +........+..+|.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 33455667777888888777765 35566666666777778888888888888877664 33366667777778888888
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
.+|+.+++..... .+-|+..|..|..+|...|+..+|..... ..|...|++++|...+..+
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 8888888777664 33457778888888887777776654333 3345667777777777777
Q ss_pred HHC
Q 040027 549 KEK 551 (595)
Q Consensus 549 ~~~ 551 (595)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.4e-05 Score=65.08 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=82.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 040027 404 LFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL 483 (595)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 483 (595)
.++.+.... +.+......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...+++....+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344555442 2244555666677788888888888888887765 5677888888888888888888888888877642
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 040027 484 VPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENA 517 (595)
Q Consensus 484 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (595)
+.+...+..+..+|...|++++|+..|++.++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3346777778888888888888888888888853
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.39 E-value=5.3e-07 Score=52.00 Aligned_cols=32 Identities=47% Similarity=0.845 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 482 VLVPNVVTYNIMIQGLCNDGQMDKARDLFLDM 513 (595)
Q Consensus 482 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (595)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00027 Score=66.62 Aligned_cols=146 Identities=13% Similarity=0.087 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 350 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK 429 (595)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 429 (595)
.......+...|++++|+..++.++...+ -|+..+......+...++.++|.+.++.+.... +........+..+|.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 33334445556666666666666665522 244444555556666667777777666666652 2224445556666677
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDL 509 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 509 (595)
.|++.+|+..++...... +.|+..|..|..+|...|+..++.... ...|...|++++|+..
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHH
Confidence 777777777777666554 566677777777777777666554432 2344556777777777
Q ss_pred HHHHHHc
Q 040027 510 FLDMEEN 516 (595)
Q Consensus 510 ~~~~~~~ 516 (595)
+..+.+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 7666665
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00044 Score=63.62 Aligned_cols=274 Identities=13% Similarity=0.041 Sum_probs=146.4
Q ss_pred cccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHH----hhCCCCC-CHHHHHHHHHHHHhcC
Q 040027 36 TTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRL----NATGLFP-NLYTYNILINCFCKIG 110 (595)
Q Consensus 36 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~g 110 (595)
.....+.+..+|.+|+..+..+++..|. ++..|..-+..+.--|++++.. ....+.| .+.......+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 5667788889999999999999999998 7888888888888888888711 1111222 2233444445555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCCHhhHHHH-HHHHHhcCChhHHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGC-EPNVITYNTL-INGLCRTGHTMIALNL 188 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~ 188 (595)
+..+|...++. ...+ ....++..++.+..... +|.-..+..+ ...+.-.|+.++|.++
T Consensus 132 ~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 55555554441 1111 11112222222222111 1222233322 2233445666666666
Q ss_pred HHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhH-------------HHHHHHHHHhc
Q 040027 189 FEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVT-------------YNSLIHGLCHA 255 (595)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~ 255 (595)
--.+.+.+ +.+......-..++...++.+.+..-|++.+..+ |+... +..=.+-..+.
T Consensus 192 a~~ilkld-------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 192 AIDILKLD-------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHhcc-------cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 55555543 2233333222334444556666666666655542 22211 11122345566
Q ss_pred CCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040027 256 NDWNEAKRLFIEMMDQ---GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAE 332 (595)
Q Consensus 256 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 332 (595)
|.+..|.+.|.+.+.. .+.++...|........+.|+..+|+.-.+...+.+.. -...+..-.+++...++|++|.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776653 23334445555566666677777777766666654110 1122333344555666677777
Q ss_pred HHHHHHHhc
Q 040027 333 ELFGSMESM 341 (595)
Q Consensus 333 ~~~~~~~~~ 341 (595)
+-++...+.
T Consensus 342 ~d~~~a~q~ 350 (486)
T KOG0550|consen 342 EDYEKAMQL 350 (486)
T ss_pred HHHHHHHhh
Confidence 776666554
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.31 E-value=9.8e-07 Score=50.87 Aligned_cols=34 Identities=32% Similarity=0.653 Sum_probs=31.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 516 NAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=5.3e-05 Score=62.22 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC--HhhHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN---AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN--VITYNT 171 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 171 (595)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......++ ......
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4455666655 4788999999999998874 223 23344566778889999999999999998753332 234566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQM 233 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 233 (595)
+...+...|++++|+..++..... ...+..+.....++.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788888999999999999775432 345667778889999999999999998764
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=3.9e-05 Score=63.02 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCCh
Q 040027 429 KNGYIIEAVELFRTLRILKCELD---IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 503 (595)
..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......+...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3566666666666666543 323 22333455666677777777777777776432222 12334456666677777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
++|+..++..... ......+...+.+|.+.|++++|...|++.
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777553322 233445566677777777777777777654
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=0.0053 Score=60.52 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPH-GVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDM 513 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (595)
..|..+.+--...|..+.|+..--.+.+ ..+-|....|..++.+-+....+...-+.|-++
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 3444444445556666666655444433 123455555555554444444444444433333
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=9.4e-05 Score=70.35 Aligned_cols=125 Identities=11% Similarity=0.032 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
-..++..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++.+..... +.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666677777777777777652 33 33446666666666677777777766542 3355555666666667
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
.++++.|+++.+++.... |.+..+|..|..+|...|+++.|.-.++.+..
T Consensus 247 k~~~~lAL~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777777777777653 44556777777777777777777766666543
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00013 Score=69.32 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 349 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLC 428 (595)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 428 (595)
....++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++.+.++. .+.+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 33445555666677777777777777663 33 3344666666667777777777777754 2445666666666677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 429 KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+.++++.|..+.+++.... |.+..+|..|+.+|...|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7788888888888877764 55566788888888888888888877777653
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.0022 Score=59.15 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040027 356 GYCKNKEVEEALSLYREMVSKG---IKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY 432 (595)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 432 (595)
-..+.|++..|.+.|.+.+... ..++...|.....+..+.|+..+|+.--+...+.+ +.=...+..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776642 33444555555666677777777777766666431 0011222233344555677
Q ss_pred HHHHHHHHHHHHHc
Q 040027 433 IIEAVELFRTLRIL 446 (595)
Q Consensus 433 ~~~A~~~~~~~~~~ 446 (595)
+++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777777654
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.03 E-value=0.00028 Score=56.68 Aligned_cols=95 Identities=7% Similarity=-0.112 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040027 454 AYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGF 532 (595)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (595)
..-.+...+...|++++|..+|+.+.. +.| +..-|..|..++-..|++++|+..|..+...+ +.|+..+..+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334445555667777777777777766 344 35566677777777777777777777777765 45666777777777
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 040027 533 IRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 533 ~~~g~~~~A~~~~~~~~~~ 551 (595)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777653
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=5.6e-05 Score=66.55 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=74.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCCh
Q 040027 425 DGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 503 (595)
.-+.+.+++.+|+..|.++++.. +.|+..|..-..+|.+.|.++.|++-.+..+. +.|+ ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 34567788888888888888776 66777777778888888888888888888777 5665 46788888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPDVITFDM 527 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~~~~~~~ 527 (595)
++|++.|++.++. .|+..+|..
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHH
Confidence 8888888888874 566555543
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00047 Score=61.29 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhcCCCCCHhhHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAE---SRIMEAAALFTKLKAFGCEPNVITYNT 171 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (595)
|+..|-.|..+|...|++..|...|.++.+.. ++++..+..+..++... ....++..+|+++...+ +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 77778888888999999999999999999885 56777777777776543 34467889999999875 337788888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
|...+...|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888999999999999999999875
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00025 Score=56.04 Aligned_cols=100 Identities=15% Similarity=0.013 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--CCHhhHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFT--PNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCE--PNVITYNTL 172 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 172 (595)
.++..++..+.+.|++++|...|+.+...... .....+..+...+.+.|++++|.+.|+.+...... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999999986421 12456777889999999999999999999876322 125668888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
..++...|++++|...++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 899999999999999999999875
No 150
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.99 E-value=0.015 Score=54.63 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHH----HHHh---cCChHHHHHHHHhcccCCCCCC----HHHHHHHH
Q 040027 427 LCKNGY-IIEAVELFRTLRILKCELDIQAYNCLID----GLCK---SGRLKFAWELFCSLPHGVLVPN----VVTYNIMI 494 (595)
Q Consensus 427 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~ 494 (595)
+-+.|. -++|..+++.+++.. +-|...-+.+.. +|.. ...+..-..+-+-+.+.|+.|- ...-|-|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 344454 677777777777643 334443333222 2221 1223333344344445556552 33444444
Q ss_pred HH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 495 QG--LCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSI 562 (595)
Q Consensus 495 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 562 (595)
.+ +..+|++.++.-.-.-..+ +.|++.+|..++-++....+|++|..++..+ +|+..+++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 33 4468888888776666655 5788899998888888899999999988765 456555554
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00027 Score=55.82 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAA--PDVITFDML 528 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 528 (595)
+..++..+.+.|++++|...|+.+... .|+ ...+..++.++...|++++|...|+++...... ....++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344444555555555555555555442 121 233444555555556666666666655543211 113344555
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC
Q 040027 529 IHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+.++...|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666665553
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.1e-05 Score=58.95 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040027 465 SGRLKFAWELFCSLPHGVL-VPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNE 543 (595)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 543 (595)
.|+++.|+.+++++.+... .++...+..++.+|.+.|++++|..++++ .+.+ +.+......++.+|...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666655211 01233444456666666666666666655 2221 1122333444666666666666666
Q ss_pred HHHH
Q 040027 544 LLHK 547 (595)
Q Consensus 544 ~~~~ 547 (595)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.97 E-value=0.0011 Score=59.54 Aligned_cols=179 Identities=15% Similarity=0.035 Sum_probs=103.8
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 37 TREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 37 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
.+..+...|++++|++.|+.++...|. ++..-.. ...++.++.+.++++.|+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a--------------------------~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQV--------------------------QLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHH--------------------------HHHHHHHHHhcCCHHHHH
Confidence 345557789999999999999999998 4433322 225777888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---HhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKGLHA--E---------------SR---IMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---------------g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
..+++.++..+......+...+.+++. . .+ ...|++.|+.+++. -|+.
T Consensus 90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S---------- 157 (243)
T PRK10866 90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS---------- 157 (243)
T ss_pred HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC----------
Confidence 999999988543323333333333221 1 11 23455566666654 2332
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC--CCCCCHhHHHHHHHHHHh
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE--NINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~ 254 (595)
.-..+|...+..+...- ...-..+...|.+.|.+..|..-++.+.+. +.+........+..+|..
T Consensus 158 ---~ya~~A~~rl~~l~~~l----------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 158 ---QYTTDATKRLVFLKDRL----------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred ---hhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 22233333333332210 111124455566666666666666666553 444455566666666777
Q ss_pred cCCHHHHHHHHHHH
Q 040027 255 ANDWNEAKRLFIEM 268 (595)
Q Consensus 255 ~~~~~~A~~~~~~~ 268 (595)
.|..++|..+...+
T Consensus 225 lg~~~~a~~~~~~l 238 (243)
T PRK10866 225 LQLNAQADKVAKII 238 (243)
T ss_pred cCChHHHHHHHHHH
Confidence 77766666655444
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00046 Score=55.47 Aligned_cols=101 Identities=8% Similarity=-0.090 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.+....-.+...+...|++++|..+|+.+.... +.+..-|..|..++-..|++++|+..|.......+ -|+..+..+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 344556667778889999999999999999885 44677788888889999999999999999999874 4889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 040027 174 NGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.++...|+.+.|.+.|+..+..-
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00018 Score=54.13 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
+..++..+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++..+.. +.+..++..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 344555566667777777777666552 23 23556666666667777777777777766653 334456666666777
Q ss_pred HcCChhHHHHHHHHHHH
Q 040027 534 RINEPSKVNELLHKMKE 550 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~ 550 (595)
..|++++|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77777777777776654
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00021 Score=60.48 Aligned_cols=121 Identities=8% Similarity=-0.065 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP--NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLI 529 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 529 (595)
...+..++..+...|++++|+..|++.......| ...+|..+..++...|++++|+..++++.... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666777777777777777776532121 13467777777888888888888888877653 33345555566
Q ss_pred HHHH-------HcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCcc
Q 040027 530 HGFI-------RINEPSKVNELLHKMKEK---KVMPDASIVSIVVDLLVKNEIS 573 (595)
Q Consensus 530 ~~~~-------~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 573 (595)
..+. ..|++++|...+++.... .+..++..+..+...+...|++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 6665 677777555555544311 1223443344444555555554
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.029 Score=55.61 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH----------HHHhcCChhHHHHHHHHHHhcCC
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN----------GLCRTGHTMIALNLFEEMANGNG 197 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~~~~~~~ 197 (595)
.|.+..|..+.....+.-.++-|...|-+.... +.......|-. .-.--|++++|.+++-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 678889998888887777888888777665432 12211111111 1122477777777776665432
Q ss_pred CCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040027 198 EIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-NINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPS 276 (595)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 276 (595)
..+..+.+.||+-...++++.--.. .-..-...|+.+...+.....|++|.+.|..-..
T Consensus 765 --------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------ 824 (1189)
T KOG2041|consen 765 --------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------ 824 (1189)
T ss_pred --------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3456666777777776666542211 0011245677788888888888888887765422
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040027 277 VVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILING 356 (595)
Q Consensus 277 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (595)
....+.++.+..++++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+.. .| ...+..
T Consensus 825 ---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~t 887 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHT 887 (1189)
T ss_pred ---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHH
Confidence 123455666666666555444433 3345556667777777787777776654321 11 123455
Q ss_pred HHhCCCHHHHHHHHHHH
Q 040027 357 YCKNKEVEEALSLYREM 373 (595)
Q Consensus 357 ~~~~~~~~~A~~~~~~~ 373 (595)
|...++|.+|.++-++.
T Consensus 888 Cv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 66677777777766543
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00042 Score=61.20 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=110.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (595)
..-+.+.+++.+|+..|.++++.. +.+...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 344678899999999999999974 6677888889999999999999999999999875 55678999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHH-HHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMI-QGLCNDGQMD---KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNEL 544 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 544 (595)
++|++.|++.++ +.|+..+|-.=+ .+-.+.+... .+..-++.....|..|+...... ...-.......+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-----~~l~nnp~l~~~ 238 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-----GDLMNNPQLMQL 238 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-----cccccCHHHHHH
Confidence 999999999999 889877664433 3333344433 44444555445554455433221 122233444555
Q ss_pred HHHHHH
Q 040027 545 LHKMKE 550 (595)
Q Consensus 545 ~~~~~~ 550 (595)
...|..
T Consensus 239 ~~~m~~ 244 (304)
T KOG0553|consen 239 ASQMMK 244 (304)
T ss_pred HHHHhh
Confidence 555654
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.0056 Score=50.06 Aligned_cols=128 Identities=14% Similarity=0.033 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHH
Q 040027 129 PNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTV 208 (595)
Q Consensus 129 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (595)
|.+..-..+..++...|+..+|...|++...--+.-|......+..+....+++..|...++++.+.+. ...++.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-----a~r~pd 161 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-----AFRSPD 161 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-----ccCCCC
Confidence 344444455555666666666666666655433334555555555666666666666666666555431 111233
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040027 209 TYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKR 263 (595)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 263 (595)
....+.+.+...|...+|+..|+..... -|+...-..-...+.++|+.+++..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555556666666666666655553 2333333333334445554444433
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=0.0042 Score=55.75 Aligned_cols=66 Identities=8% Similarity=-0.077 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAAT---FNSLIKGLHAESRIMEAAALFTKLKAFG 161 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (595)
++..+-.....+...|++++|+..|+.+...-+. +... ...++.++.+.+++++|+..+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444444555666677888888888877776321 2222 2345566677777777777777777663
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00036 Score=66.79 Aligned_cols=90 Identities=13% Similarity=-0.023 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCC
Q 040027 424 IDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 424 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 502 (595)
...+...|++++|+..|+++++.. +.+...+..+..+|...|++++|+..+++++. +.| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 344455666666666666666654 44566666666666666666666666666665 334 34556666666666666
Q ss_pred hhHHHHHHHHHHHc
Q 040027 503 MDKARDLFLDMEEN 516 (595)
Q Consensus 503 ~~~A~~~~~~~~~~ 516 (595)
+++|+..|+++++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666664
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.0037 Score=51.07 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=111.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC-CCHh
Q 040027 89 ATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCE-PNVI 167 (595)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 167 (595)
.....|++.....|..+....|++.+|...|++...--+..|......+.++....+++..|...++++-+.... .++.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 344568888889999999999999999999999998767788999999999999999999999999998876321 2345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 040027 168 TYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQM 233 (595)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 233 (595)
....+.+.+...|+.+.|...|+.....- |+..........+.++|+.+++..-+..+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 56778899999999999999999999854 66666566667778888777665544443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00076 Score=57.28 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHH
Q 040027 420 YTTFIDGLCKNGYIIEAVELFRTLRILKCELD--IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQG 496 (595)
Q Consensus 420 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 496 (595)
+..+...+...|++++|...++++.+....+. ...+..++.++.+.|++++|...+++..+ ..| +...+..+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 44444455555555555555555554321111 23445555555555555555555555554 222 23344444444
Q ss_pred HHhcCChh
Q 040027 497 LCNDGQMD 504 (595)
Q Consensus 497 ~~~~g~~~ 504 (595)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 44444433
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=5e-05 Score=55.46 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=20.1
Q ss_pred CCHhHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040027 145 SRIMEAAALFTKLKAFGCE-PNVITYNTLINGLCRTGHTMIALNLFEE 191 (595)
Q Consensus 145 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 191 (595)
|+++.|+.+++++...... ++...+..+..++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444455555444444211 1223333344445555555555555544
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00032 Score=52.68 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
.+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35667788889999999999999998874 4455778888899999999999999999998875 335578888899999
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 040027 178 RTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~ 196 (595)
..|+++.|...++......
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999999887643
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.83 E-value=0.00068 Score=64.89 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=83.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTG 180 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (595)
.-+..+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 34566778899999999999999985 5578889999999999999999999999999885 347788999999999999
Q ss_pred ChhHHHHHHHHHHhcC
Q 040027 181 HTMIALNLFEEMANGN 196 (595)
Q Consensus 181 ~~~~A~~~~~~~~~~~ 196 (595)
++++|+..|++....+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 167
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00038 Score=66.62 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 040027 379 KPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD--GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYN 456 (595)
Q Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 456 (595)
+.+......++..+....+.+.+..++-+.... ....-+.+..++++.|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555556555556666666666555543 111112233466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 040027 457 CLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLC 498 (595)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 498 (595)
.+++.+.+.|++..|.++...|...+...+..|+.-.+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666665554443344444433333333
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0014 Score=58.48 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=74.6
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCCHHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCND---GQMDKARDLFLDMEENAAAPDVITF 525 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (595)
+.|...|..|..+|...|+++.|...|.+..+. ..+|+..+..+..++... .+..++..+|++++..+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 667888888888888888888888888888773 223466666666665532 24557788888888765 5566777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 526 DMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 526 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
..|...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777888888888888888888888753
No 169
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.77 E-value=5.4e-05 Score=44.34 Aligned_cols=33 Identities=45% Similarity=0.902 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD 521 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 521 (595)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.76 E-value=0.038 Score=51.95 Aligned_cols=129 Identities=17% Similarity=0.162 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH-HHHHHH
Q 040027 418 RTYTTFIDGLCKNGYIIEAVELFRTLRILK-CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVT-YNIMIQ 495 (595)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~ 495 (595)
..|...+.+..+...++.|..+|.++.+.+ +.+++.++++++..+ ..|+...|..+|+-=... -||... .+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 344555565566666777788887777766 456666777777654 367777777777764442 344433 345555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 496 GLCNDGQMDKARDLFLDMEENAAAPD--VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+...++-+.|..+|+..+.. +..+ ..+|..++.-=..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 666777777777777766553 2223 45677777766677777777777777765
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0025 Score=63.84 Aligned_cols=142 Identities=10% Similarity=-0.039 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CChHHHHHHHHhccc
Q 040027 414 AADTRTYTTFIDGLCK--N---GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS--------GRLKFAWELFCSLPH 480 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 480 (595)
+.+...|..++++... . +....|..+|+++++.. |.....+..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4455555555554322 1 22556666666666553 33344444433333221 112333444444333
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 040027 481 GV-LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASI 559 (595)
Q Consensus 481 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 559 (595)
.. ...+...+..+.......|++++|...++++++.+ |+...|..++.++...|+.++|...++++... .|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 11 12234566666666666777788888777777754 56677777777777778888887777777763 354334
Q ss_pred H
Q 040027 560 V 560 (595)
Q Consensus 560 ~ 560 (595)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0013 Score=60.52 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCccccCcHHHHH
Q 040027 133 TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR-TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYS 211 (595)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (595)
+|..++....+.+..+.|.++|.+..+.+ ..+..+|...+..-.. .++.+.|.++|+...+. ++.+...|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~~ 74 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHHH
Confidence 34445555555555555555555554321 2233334433333222 34444466666655554 244555555
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhhCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKDENINPD---VVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
..+..+...|+.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+..+.+.+.+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555666666666666665543 1111 12555555555555666655555555554
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.74 E-value=0.036 Score=51.14 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=148.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHH
Q 040027 288 CKNRKMDEASRLLDLMVQRGVRPNACT--YNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 365 (595)
Q Consensus 288 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (595)
.-.|+++.|.+-|+.|... |.... +..|.-...+.|+.+.|..+-+.....- +.-...+...+...+..|+|+.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3456666666666666642 11111 1112222235666777776666665542 3334566667777777777777
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHH---HccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 040027 366 ALSLYREMVSKG-IKPTVVT--YNTLFLGL---FEIHQVEHALKLFDEMQRDGVAADTR-TYTTFIDGLCKNGYIIEAVE 438 (595)
Q Consensus 366 A~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 438 (595)
|+++++.-.... +.++..- -..|+.+- .-..+...|...-.+..+. .|+.. .-.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 777776655432 2222211 11121111 1123455565555555543 44432 22334567889999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc-CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 439 LFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH-GVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+++.+-+. .|.+.++..+ .+.+.|+ .+..-+++... ..++|| ..+...+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~--ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKA--EPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhc--CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 99999876 4555544332 2334454 33333333322 114555 56667777888889999988887777766
Q ss_pred CCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCC
Q 040027 517 AAAPDVITFDMLIHGFIRI-NEPSKVNELLHKMKEKKVMP 555 (595)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p 555 (595)
..|....|..+.+.-... |+-.++..++-+.++..-.|
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 368888888887776554 99999999999998654344
No 174
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.73 E-value=6.8e-05 Score=43.91 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999997
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.0022 Score=54.43 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN--VITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTV 208 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (595)
...+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|+..+++..+.. +.+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 107 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PKQPS 107 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHH
Confidence 33455666667777888888887777776532222 3567777777788888888888888877754 34566
Q ss_pred HHHHHHHHHHHcCCHhHHHH
Q 040027 209 TYSTIIDGLCKEGFVDKAKA 228 (595)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~ 228 (595)
.+..+..++...|+...+..
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHHHHcCChHhHhh
Confidence 66667777777666544443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0012 Score=55.91 Aligned_cols=114 Identities=16% Similarity=0.050 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHH
Q 040027 112 VSLGFIAFGRILR-SCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP--NVITYNTLINGLCRTGHTMIALNL 188 (595)
Q Consensus 112 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 188 (595)
+..+...+..+.+ .+.......|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444544432 2222234556777777888899999999999887653222 234788888889999999999999
Q ss_pred HHHHHhcCCCCCccccCcHHHHHHHHHHHH-------HcCCHhHHHHHHHH
Q 040027 189 FEEMANGNGEIGVVCKPNTVTYSTIIDGLC-------KEGFVDKAKALFLQ 232 (595)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 232 (595)
+++..... +.....+..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99988764 344556666666666 56666654444433
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.71 E-value=0.00042 Score=63.58 Aligned_cols=285 Identities=14% Similarity=0.078 Sum_probs=143.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHH--HHHC--CCC-CCHHHHHHHHH
Q 040027 250 HGLCHANDWNEAKRLFIEMMDQGVQPSV----VTFNVIMDELCKNRKMDEASRLLDL--MVQR--GVR-PNACTYNTLMD 320 (595)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~--~~~-~~~~~~~~l~~ 320 (595)
.-+++.|+......+|+..++.|.. |. ..|..+..+|.-.+++++|+++... .+.+ |-+ -.......+.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4577888888888888888887654 33 3455666777777778877776532 1111 111 01222334455
Q ss_pred HHHhcCCHHHHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 040027 321 GFCLMGKINRAEELFGSM----ESMGCK-HDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI 395 (595)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (595)
.+--.|.+++|.-...+- .+.|-. .....+..+...|...|+.-.... -.+.|-.+... -
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-T---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-H----------
Confidence 555566666665543332 222211 112244445555554443100000 00000000000 0
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CcCHHHHHHHHHHHHhc
Q 040027 396 HQVEHALKLFDEMQR----DGV-AADTRTYTTFIDGLCKNGYIIEAVELFRTLR----ILKC-ELDIQAYNCLIDGLCKS 465 (595)
Q Consensus 396 ~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~ 465 (595)
..++.|.+.|.+-++ .|- ......|..+...|.-.|+++.|+...+.-+ +.|- .....++..+..+++-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 011223333322111 110 0112344455555556677777776655432 2221 11234566677777777
Q ss_pred CChHHHHHHHHhccc----CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHc
Q 040027 466 GRLKFAWELFCSLPH----GV-LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN-----AAAPDVITFDMLIHGFIRI 535 (595)
Q Consensus 466 g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 535 (595)
|+++.|.+.|+.... .| -.....+..+|..+|.-..++++|+.++.+-+.- +..-....+..|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777765432 11 1122345556777777777778888777665431 1122345667777888888
Q ss_pred CChhHHHHHHHHHHH
Q 040027 536 NEPSKVNELLHKMKE 550 (595)
Q Consensus 536 g~~~~A~~~~~~~~~ 550 (595)
|..++|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777766653
No 178
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=8.4e-05 Score=43.14 Aligned_cols=32 Identities=34% Similarity=0.607 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAP 520 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 520 (595)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444555555555555555544444443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0056 Score=61.40 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 207 TVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
+..+..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.|.+...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444555555555555555543 3455555555555555666665555555554
No 180
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.69 E-value=8.4e-05 Score=43.14 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 040027 523 ITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP 555 (595)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 555 (595)
.+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999999987
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=0.00019 Score=50.05 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN-EPSKVNELLHKMKE 550 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 550 (595)
+..+|..++..+...|++++|+..|+++++.+ +.+...|..++.+|...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45667777777788888888888888887764 445667777777888887 67888888877765
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0016 Score=60.10 Aligned_cols=130 Identities=17% Similarity=0.095 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 040027 384 TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK-NGYIIEAVELFRTLRILKCELDIQAYNCLIDGL 462 (595)
Q Consensus 384 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (595)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+.- +.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555666666666677777776666432 2233444443333222 455555777777766543 55666677777777
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNV---VTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
...++.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777664 22222 36667776666777777777777777664
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0064 Score=56.34 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHH
Q 040027 251 GLCHA-NDWNEAKRLFIEMMDQ----GVQP-SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRP-----NAC-TYNTL 318 (595)
Q Consensus 251 ~~~~~-~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l 318 (595)
.|... |++++|++.|.+..+. +.+. -..++..+...+.+.|++++|..+|+++....... +.. .+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5555555555554332 1000 01233444455555555555555555554432111 111 11222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 040027 319 MDGFCLMGKINRAEELFGSMES 340 (595)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~ 340 (595)
+-++...||...|...+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3344445555555555555543
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0029 Score=49.07 Aligned_cols=56 Identities=21% Similarity=0.057 Sum_probs=25.9
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 460 DGLCKSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
.++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555544443322 22333444445555555555555555444
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0027 Score=58.81 Aligned_cols=137 Identities=13% Similarity=0.088 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc----CCC-CCH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCF---TPN--AATFNSLIKGLHAESRIMEAAALFTKLKAF----GCE-PNV 166 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 166 (595)
..|......|...|++++|...|.++..... .+. ...|......| +..++++|++.+++.... |-. .-.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5677888888888999999999888755311 111 11233333333 344777777777766542 210 012
Q ss_pred hhHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 167 ITYNTLINGLCRT-GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 167 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
..+..+...|... |++++|++.|++....-...+. ...-..++..++..+.+.|++++|.++|+++..
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-PHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2344555555555 6666666666655432100000 000123344455555556666666666655544
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00013 Score=50.67 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=26.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 108 KIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
+.|++++|+..|+++.... +.+..++..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555543 234445555555555555555555555555544
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.0043 Score=48.18 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=8.4
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 040027 106 FCKIGRVSLGFIAFGRILRS 125 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~ 125 (595)
+-..|+.++|+.+|+++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~ 30 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAA 30 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHc
Confidence 33344444444444444443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.61 E-value=0.00025 Score=48.76 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 493 MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
++..+...|++++|++.|+++++.. +.+...+..++.++...|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666653 33455666666666666666666666666665
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.0084 Score=52.39 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
..+-..+..+...|++.+|+..|+.+...-+ +--..+...++.++.+.|+++.|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455566667777777777777776521 112334555666677777777777777776665
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0013 Score=63.11 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH
Q 040027 412 GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL--KCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVT 489 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 489 (595)
+.+.+...+..++..+....+.+.+..++.+.... ....-+.+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667777777787777777788888888877754 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRI 535 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (595)
++.|+..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887766666667776666666555
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0017 Score=59.83 Aligned_cols=288 Identities=16% Similarity=0.097 Sum_probs=146.6
Q ss_pred HHHHHcCCHhHHHHHHHHHhhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHH--HHC--CCC-CCHhhHHHHHH
Q 040027 215 DGLCKEGFVDKAKALFLQMKDENINPD----VVTYNSLIHGLCHANDWNEAKRLFIEM--MDQ--GVQ-PSVVTFNVIMD 285 (595)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~~--~~~--~~~-~~~~~~~~l~~ 285 (595)
.-+++.|+......+|+..++.|.. | ...|..|..+|.-.+++++|+++...= +.. |-+ -...+...+..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4588999999999999999998743 3 345777888888899999999875321 111 111 11223344566
Q ss_pred HHHhcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH
Q 040027 286 ELCKNRKMDEASRLLDLMV----QRGVR-PNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDV--SYNILINGYC 358 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 358 (595)
.+-..|.+++|+-...+-+ +.|-+ .....+..+...|...|+--....- .+.|-.+... .+...+..|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHHHHHHHHHHHHHH
Confidence 6667788888776554332 22211 1234555567777665542110000 0001001000 1111111111
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCH
Q 040027 359 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQR----DGV-AADTRTYTTFIDGLCKNGYI 433 (595)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~ 433 (595)
+-+++.+++-.. ..--..|..+...|.-.|+++.|+...+.-+. .|- ......+..+..++.-.|++
T Consensus 180 ------eNL~l~~~lgDr--~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 180 ------ENLELSEKLGDR--LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred ------HHHHHHHHhhhH--HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 111111111110 00123344555555566666666655443221 111 11234455666666667777
Q ss_pred HHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc----CC-CCCCHHHHHHHHHHHHhcCCh
Q 040027 434 IEAVELFRTLRIL----K-CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH----GV-LVPNVVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 434 ~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~ 503 (595)
+.|.+.|+..... + .........+|..+|.-..++++|+.++.+-+. .+ ..-....+.+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 7777776654322 2 122334445566666666677777776665322 00 111234555667777777777
Q ss_pred hHHHHHHHHHHH
Q 040027 504 DKARDLFLDMEE 515 (595)
Q Consensus 504 ~~A~~~~~~~~~ 515 (595)
++|+.+.+..++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 777766655543
No 192
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.075 Score=54.14 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN--AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
.....-+..+.+...++-|+.+.+.-.. +++ ..........+.+.|++++|...|-+.+.. ++| ..++.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 3444566777788888888887765331 222 223344455567889999999988887653 232 24556
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
-|....+..+-..+++.+.+.+ -.+...-..|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 6666667777778888888776 3445566789999999999998887776654 2211 1123456677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040027 255 ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLM 303 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 303 (595)
.+-.++|..+-..... ...... -.+-..+++++|+++++.+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 7777777766554432 222222 3345678899999888765
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00057 Score=47.45 Aligned_cols=59 Identities=27% Similarity=0.189 Sum_probs=35.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH
Q 040027 429 KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTY 490 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 490 (595)
+.|++++|...|+++.... |.+...+..++.+|.+.|++++|..+++++.. ..|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHH
Confidence 4566666666666666554 44666666666666666666666666666665 34453333
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.51 E-value=0.12 Score=50.93 Aligned_cols=183 Identities=8% Similarity=0.028 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 040027 383 VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGL 462 (595)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (595)
.+|...+.--...|+.+.+.-+++...-. +..=...|-..+.-....|+.+-|..++.+..+...+..+.+...-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 34555555555556666655555554421 11112333333333344466666665555555433332222222222223
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChhHHH---HHHHHHHHcCCCCCHHHHHHHH----H-HHH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNV-VTYNIMIQGLCNDGQMDKAR---DLFLDMEENAAAPDVITFDMLI----H-GFI 533 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~----~-~~~ 533 (595)
-..|+++.|..+++.+.+. . |+. ..-..-+....+.|+.+.+. .++...... .-+..+...+. + .+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHH
Confidence 3445666666666666553 2 432 12122223333455555554 222222211 11111111111 1 122
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 534 RINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
-.++.+.|..++.++.+. ++++...|..+++...-.+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 345556666666666653 3444555555555444443
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.032 Score=48.78 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
...+..+...|++.+|++.|+.+....+. .+.-..+...++.++.+.|+++.|...+++..+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566666666666666554310 1112334445555566666666666666665543
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00055 Score=47.71 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhc
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES-RIMEAAALFTKLKAF 160 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 160 (595)
++..|..++..+...|++++|+..|+++++.. +.+..+|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677777777778888888888888877774 445667777777777777 677777777777654
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00069 Score=46.49 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=39.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
++..+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556667777777777777777664 335666667777777777777777777777655
No 198
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0032 Score=46.90 Aligned_cols=69 Identities=22% Similarity=0.471 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 254 HANDWNEAKRLFIEMMDQGV-QPSVVTFNVIMDELCKNR--------KMDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
..+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-..+.+|++|+..+++|+..+|+.++..+
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 33444444444444444444 444444444444333321 1223444555555555555555555554443
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0036 Score=46.67 Aligned_cols=79 Identities=16% Similarity=0.343 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHhhCCC-CCCHhHHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHhhHH
Q 040027 211 STIIDGLCKEGFVDKAKALFLQMKDENI-NPDVVTYNSLIHGLCHAND--------WNEAKRLFIEMMDQGVQPSVVTFN 281 (595)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~ 281 (595)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++....+..- .-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 8999999999988776532 345678999999999999999999
Q ss_pred HHHHHHHh
Q 040027 282 VIMDELCK 289 (595)
Q Consensus 282 ~l~~~~~~ 289 (595)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.41 E-value=0.12 Score=48.82 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGV-LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF-DMLI 529 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 529 (595)
..+|..++..-.+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+...|-.+|+--+.. -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777778888999999999999877 5567788888887665 68899999999987765 3454444 5667
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCccc
Q 040027 530 HGFIRINEPSKVNELLHKMKEKKVMPD--ASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 574 (595)
.-+...|+-+.|..+|++.+++ +..+ ..+|..+++-=+.-|.+.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 7778899999999999988754 3344 678899988888888875
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.11 Score=48.21 Aligned_cols=286 Identities=11% Similarity=0.070 Sum_probs=148.5
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHH--HHHHHHHHHH
Q 040027 144 ESRIMEAAALFTKLKAFGCEPNVITYNTLING--LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVT--YSTIIDGLCK 219 (595)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 219 (595)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtRllGLRgLyleAqr 166 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---------PETRLLGLRGLYLEAQR 166 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------hHHHHHhHHHHHHHHHh
Confidence 45666666655554322 12233333333332 23467777777777777642 11111 1222222335
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhH--HHHHHH--H-HhcCCh
Q 040027 220 EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG-VQPSVVTF--NVIMDE--L-CKNRKM 293 (595)
Q Consensus 220 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~--~~l~~~--~-~~~g~~ 293 (595)
.|+.+.|..+-+..-..- +--...+...+...+..|+|+.|+++.+.-.... +.++..-- -.++.+ . .-.-+.
T Consensus 167 ~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 677777777666655432 2234556666777777777777777776654432 22332211 111111 1 112244
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 040027 294 DEASRLLDLMVQRGVRPNACT-YNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 372 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (595)
..|.+.-.+..+. .|+... .....+++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+ .++.-+++
T Consensus 246 ~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 246 ASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKR 317 (531)
T ss_pred HHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHH
Confidence 5555555544443 333222 2233566777778888878877777663 3333332 222334443 33333332
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCC
Q 040027 373 MVSK-GIKP-TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLC-KNGYIIEAVELFRTLRILKCE 449 (595)
Q Consensus 373 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~ 449 (595)
.... ..+| +..+...+..+-...|++..|..--+...+. .|....|..+...-. ..|+-.++..++.+..+...+
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2211 1222 4455566666777777777777666666553 566666666666543 348888888888877765433
Q ss_pred c
Q 040027 450 L 450 (595)
Q Consensus 450 ~ 450 (595)
|
T Consensus 396 P 396 (531)
T COG3898 396 P 396 (531)
T ss_pred C
Confidence 3
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.079 Score=46.21 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH-----HHHHHH
Q 040027 386 NTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQA-----YNCLID 460 (595)
Q Consensus 386 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~~ 460 (595)
+.++..+.-.+.+.-....+.+.++...+.++...+.++..-.+.|+.+.|...|++..+..-..+... ......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444555556666666666777776665556666667777777777777777777776554322222222 222233
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
.|.-++++..|...++++...+ +.|+...|.-+.+..-.|+...|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445566666666666666531 123444455455555566667777777766664
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0065 Score=54.97 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV----VTYNIMIQGLCNDGQMDKARDLFLDMEENA--AAPDVITFDML 528 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 528 (595)
|...+....+.|++++|+..|+.++.. .|+. ..+..++.+|...|++++|...|+.+++.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344333344556677777777666652 3332 355566667777777777777777776541 11124445555
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 040027 529 IHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+.++...|++++|.++|+++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6666677777777777777765
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.29 E-value=0.00039 Score=39.21 Aligned_cols=29 Identities=41% Similarity=0.799 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENA 517 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (595)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555543
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.27 E-value=0.04 Score=54.19 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 314 TYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
+...+..-+.+...+..|.++|..|-.. ..++..+...++|++|..+-+...+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3444444444555566666666655321 2345556666777777766655443
No 206
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.27 E-value=0.23 Score=49.00 Aligned_cols=400 Identities=10% Similarity=-0.004 Sum_probs=185.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCChhHHHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC-RTGHTMIALNLF 189 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~ 189 (595)
..+.+..++..++.. .|.--.-|......=.+.|..+.+.++|++.+. +++.+...|......+. ..|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 335555566666543 122223445555555566777788888887765 35666666665555443 356666777777
Q ss_pred HHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH---hc------CCHHH
Q 040027 190 EEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC---HA------NDWNE 260 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~ 260 (595)
+.+....|. --.....|...|..-...+++.....+++++.+. ....++....-|. +. ...++
T Consensus 138 e~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 138 ERAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHH
Confidence 777665321 1123456777777777777788888888877763 1222222222221 11 12222
Q ss_pred HHHHHHHHHHC---C-CCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040027 261 AKRLFIEMMDQ---G-VQPSVVTFNVIMDELC-KNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELF 335 (595)
Q Consensus 261 A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (595)
+.++-...... + ..+....+...+.-.. ..+..+++...+.+... ..-.++-..-.....+..+
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhh
Confidence 22222221110 0 0000000000000000 00011111111111100 0001111112222222233
Q ss_pred HHHHhcC-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040027 336 GSMESMG-------CKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEM 408 (595)
Q Consensus 336 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 408 (595)
+.-.+.- .+.....|...+..-...|+++.+.-+|++..-. +..-...|-..+.-....|+.+-+..++...
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 3222210 0123345666666677777777777777766531 1112233444444444457777777666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH---HHHHhcccCCCCC
Q 040027 409 QRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAW---ELFCSLPHGVLVP 485 (595)
Q Consensus 409 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p 485 (595)
.+-..+..+.+-..-....-..|++..|..+++.+...- +--...-..-+....+.|+.+.+. .++........
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~-- 434 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE-- 434 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--
Confidence 554322222222111122234567777777777777643 222222233344455666766666 44443333211
Q ss_pred CHHHHHHHHH-----HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 040027 486 NVVTYNIMIQ-----GLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN 536 (595)
Q Consensus 486 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 536 (595)
+......+.. .+.-.++.+.|..++.++.+. ++++...|..+++.+...+
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1111211111 122356777777777777775 3556666666666555444
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.0021 Score=45.35 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=38.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 495 QGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
..|.+.+++++|.+++++++..+ |.+...+...+.++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777764 445566666777777777777777777777764
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.0034 Score=51.63 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK-----EKKVMPDASIVSIV 563 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 563 (595)
....++..+...|++++|+.+.++++... |-+...|..++.+|...|+..+|.++|+++. +.|+.|++.+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 44556667778889999999998888875 6677888888999999999999988888875 45888888776554
Q ss_pred H
Q 040027 564 V 564 (595)
Q Consensus 564 ~ 564 (595)
-
T Consensus 143 ~ 143 (146)
T PF03704_consen 143 R 143 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.0071 Score=54.72 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC--CCCHhhHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN--AATFNSLIKGLHAESRIMEAAALFTKLKAFGC--EPNVITYNTL 172 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l 172 (595)
..|...+....+.|++++|+..|+.+++.-+... +.++..+...|...|++++|+..|+.+...-. +....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4455555555778999999999999999832211 35788899999999999999999999987621 1235566677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
+.++...|+.++|..+|+.+.+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888889999999999999999865
No 210
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.19 E-value=0.00054 Score=38.61 Aligned_cols=30 Identities=23% Similarity=0.591 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKEKKV 553 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 553 (595)
+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999998774
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0065 Score=51.48 Aligned_cols=105 Identities=14% Similarity=0.273 Sum_probs=54.4
Q ss_pred CcCHHHHHHHHHHHHh-----cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 040027 449 ELDIQAYNCLIDGLCK-----SGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVI 523 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 523 (595)
..+..+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3456666666666653 24555555556666666666666666666665553 2211 00 0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEI 572 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 572 (595)
.+.....-| -.+.+-|++++++|...|+-||.+++..+++++++.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000000000 01224566666666666666666666666666666554
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.24 Score=46.41 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=52.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040027 353 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY 432 (595)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 432 (595)
-+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++..+.... .-++..|..++.+|.+.|.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555544432 23555555556666666666555443221 1123445555666666666
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 040027 433 IIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLP 479 (595)
Q Consensus 433 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 479 (595)
..+|..++.++ +. ..-+..|.+.|++.+|.+.--+..
T Consensus 253 ~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 66665555541 11 223445555566655555544433
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.17 Score=44.27 Aligned_cols=141 Identities=14% Similarity=0.041 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q 040027 350 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG-----VAADTRTYTTFI 424 (595)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 424 (595)
.+.++.++.-.+.+.-....+.+.++...+-++.....+++.-.+.|+.+.|...|++..+.. ............
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555666666777777777777776555566666777777777777777777777665431 222222233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 040027 425 DGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIM 493 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 493 (595)
..|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|++.++.+.+ ..|.+.+-+++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 44566778888888888887765 55666666666666667889999999998888 45655544433
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.09 E-value=0.17 Score=44.55 Aligned_cols=77 Identities=22% Similarity=0.199 Sum_probs=56.4
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040027 38 REGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFI 117 (595)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 117 (595)
+..-++.|++++|.+.|+.+...+|. ++.+ ..+...++.++.+.+++++|+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~--s~~~--------------------------~qa~l~l~yA~Yk~~~y~~A~~ 92 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPF--SPYS--------------------------EQAQLDLAYAYYKNGEYDLALA 92 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--Cccc--------------------------HHHHHHHHHHHHhcccHHHHHH
Confidence 33446779999999999999998887 4332 3444467888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 040027 118 AFGRILRSCFTPNAATFNSLIKGLH 142 (595)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (595)
..++....-+......|...+.++.
T Consensus 93 ~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 93 YIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhCCCCCChhHHHHHHHHH
Confidence 9999988855444455655565554
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.08 E-value=0.25 Score=46.77 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 522 VITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
.-.+..++.++.-.|++++|.+.+++|.+.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 334456677777778888888888888764
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.014 Score=49.49 Aligned_cols=123 Identities=25% Similarity=0.318 Sum_probs=85.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040027 402 LKLFDEMQRDGVAADTRTYTTFIDGLCK-----NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFC 476 (595)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (595)
...|+.... -..+..++..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|++++=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 344444432 25688999999999875 47788888889999999999999999999998754 3322 111111
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 477 SLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 477 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
.+ ..- .-.+-+-|++++++|...|+-||..++..++..+.+ ...+.+-+.+|
T Consensus 110 ~~---------------F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~---~s~p~~K~~rm 161 (228)
T PF06239_consen 110 AE---------------FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR---KSHPMKKYRRM 161 (228)
T ss_pred HH---------------hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc---ccHHHHHHHHH
Confidence 11 111 123456789999999999999999999999999844 44444444444
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.05 E-value=0.31 Score=46.34 Aligned_cols=448 Identities=11% Similarity=0.089 Sum_probs=236.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHH------HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH--H
Q 040027 105 CFCKIGRVSLGFIAFGRILRSCFTPNAAT------FNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING--L 176 (595)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~ 176 (595)
.+.+++++.+|..+|.++.+.. ..++.. .+.++++|.. .+.+.....+..+.+. .| ...|..+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3457899999999999998763 223222 2345566554 4555555555555554 22 3344444443 3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcc-c-------cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC----CCCCCHhH
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVV-C-------KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE----NINPDVVT 244 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~ 244 (595)
.+.+.+.+|++.+......-.....+ . -++...-+..++++...|++.+++.+++++... ....+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 47889999999988776541100000 0 001112244677888999999999998887764 33467888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 245 YNSLIHGLCHANDWNEAKRLFIEMMDQ---GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDG 321 (595)
Q Consensus 245 ~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (595)
|+.++-.+.+ ..|-++.+. .+-|+ .|. ++-.|.+.=+.-+.. -|+ .+.|.......++..
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pd--yYe-milfY~kki~~~d~~-~Y~-----k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPD--YYE-MILFYLKKIHAFDQR-PYE-----KFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChH--HHH-HHHHHHHHHHHHhhc-hHH-----hhCcHHHHHHHHHHH
Confidence 8876655543 233343322 12222 232 333332221111110 001 122333333333332
Q ss_pred HHhc--CCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHc
Q 040027 322 FCLM--GKINRAEELFGSMESMGCKHDDV-SYNILINGYCKNKEVEEALSLYREMVSKGIKP----TVVTYNTLFLGLFE 394 (595)
Q Consensus 322 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~ 394 (595)
..-. ....--++++......-+.|+.. ....+..-+.+ +.+++..+.+.+....+.+ -..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 12233344444444443444433 33344444443 4455555444443321111 23467777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH----hcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHH
Q 040027 395 IHQVEHALKLFDEMQRDGVAADTRTYTT-------FIDGLC----KNGYIIEAVELFRTLRILKCELD--IQAYNCLIDG 461 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 461 (595)
.++...|.+.+..+... .|+...-.. +.+..+ ..-+..+=+.+|+.+...++... +.....-+.-
T Consensus 311 ~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKH 388 (549)
T ss_pred HHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 88888888888877654 333221111 111112 11123334455555554432211 1112222334
Q ss_pred HHhcCC-hHHHHHHHHhcccCCCCC-CHHHHHHHH----HHHHh---cCChhHHHHHHHHHHHcCCCCC----HHHHHHH
Q 040027 462 LCKSGR-LKFAWELFCSLPHGVLVP-NVVTYNIMI----QGLCN---DGQMDKARDLFLDMEENAAAPD----VITFDML 528 (595)
Q Consensus 462 ~~~~g~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 528 (595)
+.+.|. -++|+++++.+.. +.| |...-|.+. .+|.+ ...+.+-..+-+-..+.|++|- ...-+.|
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 566666 8899999999987 444 333333322 22322 1223333333344445677664 2333444
Q ss_pred HH--HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccchHHHH
Q 040027 529 IH--GFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKSLPSFLV 582 (595)
Q Consensus 529 ~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~i~~~~~ 582 (595)
.+ -+...|++.++.-+-.-+.+ +.|++.+|+.++-++....+++++.+-+..
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 33 45678999999988888876 779999999999999999999855554443
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.022 Score=46.84 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh-----CCCCCCHh
Q 040027 169 YNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD-----ENINPDVV 243 (595)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 243 (595)
...++..+...|++++|+...+.+...+ |.+...|..++.+|...|+...|.+.|+.+.. .|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4455566666777777777777777665 55666777777777777777777777766543 25555554
Q ss_pred H
Q 040027 244 T 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 138 ~ 138 (146)
T PF03704_consen 138 T 138 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.97 E-value=0.012 Score=47.73 Aligned_cols=104 Identities=12% Similarity=-0.049 Sum_probs=84.2
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhh
Q 040027 90 TGLFPN-LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVIT 168 (595)
Q Consensus 90 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 168 (595)
.|++++ ....-.....+...|++++|..+|+-+...+ .-+..-|..|..++...+++++|+..|......+. -|+..
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p 107 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRP 107 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCc
Confidence 344432 2334456666788999999999999999876 44677788888888999999999999999887764 37777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 169 YNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
+......+...|+.+.|...|+.....
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 788899999999999999999999874
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0063 Score=42.84 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 104 NCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
..|.+.++++.|..++++++..+ |.++..|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777764 446666667777777777777777777777765
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.068 Score=43.53 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=45.7
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 040027 392 LFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFA 471 (595)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (595)
+...|++++|..+|.-+...+ +.+..-+..+..++...+++++|...|....... ..|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 344556666666655555443 3334444555555555555666666555554433 23344444455555555555555
Q ss_pred HHHHHhccc
Q 040027 472 WELFCSLPH 480 (595)
Q Consensus 472 ~~~~~~~~~ 480 (595)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 555555554
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0023 Score=45.89 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccC-cHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 167 ITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKP-NTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
.++..+...|...|++++|++.|++..+.....+. ..+ ...++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677888888888888888888887754211111 112 256788888999999999999999988654
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.28 Score=44.01 Aligned_cols=146 Identities=15% Similarity=0.077 Sum_probs=85.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDK 505 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 505 (595)
.....|++.+|...|+.+.... +.+......++.+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777776654 444566666777777777777777777776543111112222223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCccc
Q 040027 506 ARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVM-PDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 506 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~ 574 (595)
...+-.+.-.. +.|...-..+...+...|+.++|.+.+=.++.++.. -|...-..+++.+.--|..+
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 44444444432 335556666777777777777777776666654322 25566666777776666555
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.47 Score=44.96 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC---CCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhhH
Q 040027 207 TVTYSTIIDGLCKEGFVDKAKALFLQMKDEN---INPDVVTYNSLIHGLCH---ANDWNEAKRLFIEMMDQGVQPSVVTF 280 (595)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~ 280 (595)
+.+...++-.|....+++..+++.+.+...- +.-....-...+-++.+ .|+.++|++++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444556666888888888888888887641 11122222233345555 78888888888886665566677778
Q ss_pred HHHHHHHH
Q 040027 281 NVIMDELC 288 (595)
Q Consensus 281 ~~l~~~~~ 288 (595)
..+++.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77776654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0037 Score=44.75 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEEN--AAAPD----VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+++.+...|...|++++|++.|+++++. ...++ ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677777777777777777777777642 11111 34567777788888888888888877653
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.33 Score=48.13 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH---------HHHHHCCCCCCHhhHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLF---------IEMMDQGVQPSVVTFNVIMDELCKNRKM--DEASRLLDLMVQRGVRPNA 312 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~ 312 (595)
.+.+=+..|...|.+.+|.++- +.+... ..+...++..=.+|.+..+. -+..--++++.++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444455677788887776542 111100 01122233333344443332 2233334555666665665
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 313 CTYNTLMDGFCLMGKINRAEELFGS 337 (595)
Q Consensus 313 ~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (595)
.. +...++-.|++.+|.++|.+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHH
Confidence 43 34455556777777776654
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.78 E-value=0.1 Score=50.05 Aligned_cols=113 Identities=13% Similarity=0.035 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 040027 431 GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDL 509 (595)
Q Consensus 431 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 509 (595)
.+..+|.++.+++.+.+ +.|+.+...++.+....++++.|...|++... +.|| ..+|......+...|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567778888888877 77888888888888888889999999999888 6777 46777777778888999999999
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 510 FLDMEENAAAPD---VITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 510 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
+++..+.. |. .......++.|+..+ .++|.++|-+-.
T Consensus 395 i~~alrLs--P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 395 IDKSLQLE--PRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred HHHHhccC--chhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 99987753 43 334445555676665 677777766544
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.63 E-value=0.022 Score=54.37 Aligned_cols=66 Identities=15% Similarity=-0.012 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDI---QAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+.+...+..+..+|...|++++|+..|++.++.+ +.+. .+|..+..+|...|+.++|+..++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666553 2222 2366666666666666666666666665
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.33 Score=42.04 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHH
Q 040027 133 TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYST 212 (595)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (595)
.|.....+|...+++++|...+.+..+. .+.+...|+ ....++.|.-+.+++.... .-...+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--------Evvdl~eK 96 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--------EVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--------HHHHHHHH
Confidence 3444445555566666666655555432 121221111 1222334444444444321 12334455
Q ss_pred HHHHHHHcCCHhHHHHHHHHHh
Q 040027 213 IIDGLCKEGFVDKAKALFLQMK 234 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~ 234 (595)
....|...|..+.|-..+++..
T Consensus 97 As~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHH
Confidence 5556666666666666555543
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=1.1 Score=46.21 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
......+..+.+.|++++|...|-+.+..- .| ..++.-+....+..+-...++.+.+.|.. +......|+.+|
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncY 441 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHH
Confidence 344555666778999999999999887652 22 23445556666667777888999998876 666678899999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 256 (595)
.+.++.++-.+.++... .+. ...| ....+..+.+.+-.++|.-+-.+... +...... .+-..+
T Consensus 442 iKlkd~~kL~efI~~~~-~g~-----~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ 504 (933)
T KOG2114|consen 442 IKLKDVEKLTEFISKCD-KGE-----WFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLH 504 (933)
T ss_pred HHhcchHHHHHHHhcCC-Ccc-----eeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhc
Confidence 99999988777766554 220 1112 34566777777777777766555433 2333333 345568
Q ss_pred CHHHHHHHHHHH
Q 040027 257 DWNEAKRLFIEM 268 (595)
Q Consensus 257 ~~~~A~~~~~~~ 268 (595)
++++|++.+..+
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 899999988765
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.35 Score=41.91 Aligned_cols=210 Identities=14% Similarity=0.115 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...|.....+|....++++|...+.++.+- .. +...|..... -++.|..+.+++... +--...+......
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yE-nnrslfhAAK------ayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YE-NNRSLFHAAK------AYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HH-hcccHHHHHH------HHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 456777888888889999999988888753 12 2222322332 335556666666554 2233455666777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcH--HHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNT--VTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
|...|..+.|-..+++.-+.-.. +.|+. ..|..-+......++...|.++ +......+.
T Consensus 101 Y~E~GspdtAAmaleKAak~len----v~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lV 161 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALEN----VKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLV 161 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhh
Confidence 88888888887777766442100 12221 1222222222222333333332 333334555
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhc
Q 040027 254 HANDWNEAKRLFIEMMDQ----GVQPSV-VTFNVIMDELCKNRKMDEASRLLDLMVQRG---VRPNACTYNTLMDGFCLM 325 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 325 (595)
+...+.+|-..+.+-... .--++. ..+...+-.+.-..++..|...++..-+.+ -.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 556666655444332111 001111 223444445556667777777777654432 122344555566555 45
Q ss_pred CCHHHHHHHH
Q 040027 326 GKINRAEELF 335 (595)
Q Consensus 326 ~~~~~a~~~~ 335 (595)
|+.+++..++
T Consensus 241 gD~E~~~kvl 250 (308)
T KOG1585|consen 241 GDIEEIKKVL 250 (308)
T ss_pred CCHHHHHHHH
Confidence 6666555444
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.54 E-value=0.032 Score=53.29 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=67.2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV----VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVIT 524 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 524 (595)
+.+...++.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 55677888888888888888888888888887 56764 358888888888888888888888888752 12 1
Q ss_pred HHHHHH--HHHHcCChhHHHHHHHHHHHCCC
Q 040027 525 FDMLIH--GFIRINEPSKVNELLHKMKEKKV 553 (595)
Q Consensus 525 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 553 (595)
|..+.. .+....+..+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 211110 11122233466666666666554
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=96.52 E-value=0.12 Score=49.58 Aligned_cols=115 Identities=8% Similarity=-0.051 Sum_probs=82.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 040027 110 GRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLF 189 (595)
Q Consensus 110 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (595)
....+|.+..+++++.+ +.|+.+...+..++.-.++++.|..+|++....+ +-...+|........-.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45567888888888886 6688888888888888888999999999999875 335667777777777899999999999
Q ss_pred HHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 040027 190 EEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQ 232 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (595)
++..+.++ ...........+..|+.. ..+.|+++|-+
T Consensus 396 ~~alrLsP-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEP-----RRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCc-----hhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 99887651 111223333344455544 46677776644
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.15 Score=45.60 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=15.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
|...-..+...+...|+.++|++.+-.+.+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444455555555555555544444443
No 235
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.77 Score=43.05 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 040027 384 TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC 463 (595)
Q Consensus 384 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (595)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-..+... .-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455566667788777777765553 46778888888888888888877765432 224466777888888
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLD 512 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (595)
+.|+..+|..+..++. + ..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888877732 1 3446677888888888765443
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.48 E-value=0.11 Score=51.75 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCCCCHhHH
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENINPDVVTY 245 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 245 (595)
..++....-.|+-+.+++.+.+..+.++-.++....-.-.|...+..++. ..+.+.|.++++.+..+ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555678999999998887764421110000011223333333332 34567788888888776 3555555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 040027 246 NSL-IHGLCHANDWNEAKRLFIEMMDQG---VQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTL-MD 320 (595)
Q Consensus 246 ~~l-l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~ 320 (595)
... .+.+...|++++|++.|+...... .+.....+.-++..+.-..++++|...+..+.+..-. +...|..+ +.
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence 443 366777888888888888655321 0112233444556666777777777777777765322 23333322 23
Q ss_pred HHHhcCCH-------HHHHHHHHHHH
Q 040027 321 GFCLMGKI-------NRAEELFGSME 339 (595)
Q Consensus 321 ~~~~~~~~-------~~a~~~~~~~~ 339 (595)
++...++. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34445555 55555555543
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.054 Score=50.59 Aligned_cols=125 Identities=18% Similarity=0.109 Sum_probs=93.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-----CCC---------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhh
Q 040027 103 INCFCKIGRVSLGFIAFGRILRSC-----FTP---------NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVIT 168 (595)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 168 (595)
...+.+.|++..|..-|++++..- .++ -..+++.+..++.+.+.+..|++.-++.+..+ +.|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 447888999999999999976531 111 23457778888899999999999999999886 558888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhH-HHHHHHHHhh
Q 040027 169 YNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDK-AKALFLQMKD 235 (595)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 235 (595)
...-..++...|+++.|+..|+++.+.. |.|..+-+.++.+--+.....+ ..++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888899999999999999999999875 4555555566655555444433 3567777654
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.069 Score=49.89 Aligned_cols=124 Identities=21% Similarity=0.065 Sum_probs=68.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-----CC---------CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH
Q 040027 425 DGLCKNGYIIEAVELFRTLRIL-----KC---------ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTY 490 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~-----~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 490 (595)
..|.+.|++..|...|+++... .. ..-..++..+..++.+.+++..|+..-++.+... ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3455555666555555554321 00 1123345666667777777777777777766631 2345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHH
Q 040027 491 NIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEP-SKVNELLHKMKE 550 (595)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 550 (595)
..-..+|...|+++.|+..|+++++.. |.|..+-..++..-.+..++ +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666677777777777777777777743 22333333333333333333 334666666663
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.38 Score=48.12 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=71.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHHhcCChHHHHHHHHhcccCC-CCC--CHHHHHHHHHHHHhcCChhH
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAY-NCLIDGLCKSGRLKFAWELFCSLPHGV-LVP--NVVTYNIMIQGLCNDGQMDK 505 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~ 505 (595)
....+.|.++++.+.+.- |+...| ..-.+.+...|++++|++.|++..... .-| ....+--++.++....+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 345677777777777652 343333 333455667788888888887655411 011 23345566677778888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCh-------hHHHHHHHHHH
Q 040027 506 ARDLFLDMEENAAAPDVITFDML-IHGFIRINEP-------SKVNELLHKMK 549 (595)
Q Consensus 506 A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~ 549 (595)
|.+.|.++.+.. ..+..+|..+ +-++...|+. ++|.+++++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888888764 3344444333 3344456776 77777777775
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.06 Score=47.68 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=58.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 37 TREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 37 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
-+..+++.|++.+|...|...++.-|+ ++. .+..+-.|...+...|++++|.
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~--s~~--------------------------~~nA~yWLGe~~y~qg~y~~Aa 198 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPN--STY--------------------------TPNAYYWLGESLYAQGDYEDAA 198 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--Ccc--------------------------cchhHHHHHHHHHhcccchHHH
Confidence 344446667777777777777777766 211 1222334666777777777777
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 117 IAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 117 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
.+|..+.+.-+ +.-+..+..+.....+.|+.++|..+|+++.+.
T Consensus 199 ~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 199 YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777766521 122445566666666667777777777776665
No 241
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.20 E-value=1 Score=41.63 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=63.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhcC-CHhHHHHHHHHHHhc----C----CCCCH----
Q 040027 107 CKIGRVSLGFIAFGRILRSCFTPNAATFN-------SLIKGLHAES-RIMEAAALFTKLKAF----G----CEPNV---- 166 (595)
Q Consensus 107 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 166 (595)
.+.|+.+.|..++.++.......++.... .+.....+.+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888888888877643122222222 2223334455 777777777665443 1 11121
Q ss_pred -hhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 167 -ITYNTLINGLCRTGHTM---IALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 167 -~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
.+...++.+|...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445555555555433 3344444443322 223444444555555566666666666666654
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.8 Score=44.17 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCND 500 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 500 (595)
+.-+.-+...|...+|.++-.+.+ -||...|..-+.++...+++++-+++-+... .+.-|.....+|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333344445556666655555544 4555555555555666666655554444332 133344455556666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040027 501 GQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNEL 544 (595)
Q Consensus 501 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 544 (595)
|+.++|.+++.+... .. -...+|.+.|++.+|.+.
T Consensus 758 ~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 666666665554432 11 234445555555555544
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.17 Score=45.94 Aligned_cols=157 Identities=16% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCccccCcHHHHHHHHHHHHH
Q 040027 141 LHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANG-NGEIGVVCKPNTVTYSTIIDGLCK 219 (595)
Q Consensus 141 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 219 (595)
+..+|++-+|...++++++. .+.|..++...=.++...|+...-...++++... +.. .|-.........-++..
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d----lp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD----LPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC----CcHHHHHHHHHHhhHHH
Confidence 34566666666666666654 3445555555556666666666666666666544 200 11112222233344455
Q ss_pred cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCChHHH
Q 040027 220 EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ---PSVVTFNVIMDELCKNRKMDEA 296 (595)
Q Consensus 220 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 296 (595)
.|-+++|++.-++..+.+ +-|...-.++...+-..+++.++.+...+-.+.--. .-..-|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 666777777666666654 235555555666666666666666665443222101 1122233334455566777777
Q ss_pred HHHHHHH
Q 040027 297 SRLLDLM 303 (595)
Q Consensus 297 ~~~~~~~ 303 (595)
+.+|+.-
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 7777643
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.18 Score=45.69 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHH
Q 040027 325 MGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVV----TYNTLFLGLFEIHQVEH 400 (595)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 400 (595)
.|++.+|-..++++++. .|.|..++...=.+|.-.|+.+.-...+++++.. ..++.. .-..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34444444444444433 2334444444444555555555555445444432 111221 11222223344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 401 ALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRT 442 (595)
Q Consensus 401 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 442 (595)
|++.-++..+.+ +.|.....+....+.-.|+..++.++..+
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444432 33333444444444445555555544443
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.12 E-value=0.24 Score=39.39 Aligned_cols=84 Identities=10% Similarity=-0.008 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
++..+-.-.....+.|++++|+..|+.+..+-+ +-...+...++.+|.+.+++++|+..+++.++..+.....-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444555566677788999999999999998732 223456678889999999999999999999998654333444444
Q ss_pred HHHHHh
Q 040027 173 INGLCR 178 (595)
Q Consensus 173 ~~~~~~ 178 (595)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 444443
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.99 E-value=0.28 Score=38.65 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 040027 417 TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQG 496 (595)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 496 (595)
..++..++.++++.|+.+....+++..-. +..+... ..+. --....+.|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566666666666766666666654432 1111100 0000 11223356788888888888
Q ss_pred HHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 040027 497 LCNDGQMDKARDLFLDMEEN-AAAPDVITFDMLIHGFI 533 (595)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 533 (595)
|+.+|++..|+++.+...+. +++.+..+|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888887764 56666777777765443
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.17 Score=39.86 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcC---------CCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-
Q 040027 167 ITYNTLINGLCRTGHTMIALNLFEEMANGN---------GEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE- 236 (595)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 236 (595)
.++..++.++++.|+.+....+++..=..+ ...+.+..|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555554432211 0111224567777777777777777777777777776554
Q ss_pred CCCCCHhHHHHHHHHHH
Q 040027 237 NINPDVVTYNSLIHGLC 253 (595)
Q Consensus 237 ~~~~~~~~~~~ll~~~~ 253 (595)
+++.+...|..|+.-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45555667777775433
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.93 E-value=0.028 Score=34.62 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSL 137 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 137 (595)
.+|..+...|.+.|++++|+.+|+++++.. +-|...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 355666667777777777777777777663 3345555444
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.93 E-value=1.1 Score=39.58 Aligned_cols=77 Identities=10% Similarity=-0.069 Sum_probs=45.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
.-+..-.+.|++++|...|+.+....+ +-...+...++-++.+.+++++|+...++..+.-.......|...+.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 334445566788888888887776521 22334445556666777777777777777776643323333444444443
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.42 Score=47.08 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=69.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 040027 107 CKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIAL 186 (595)
Q Consensus 107 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 186 (595)
.-.|+++.+.++.+.-.-. +.-+....+.++..+.+.|..+.|+++-.. +.+ -.....+.|+.+.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHH
Confidence 3456666655555411111 011233445566666666666666654322 211 123334566666665
Q ss_pred HHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 187 NLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFI 266 (595)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 266 (595)
++.++. .+...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+
T Consensus 339 ~~a~~~------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 339 EIAKEL------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHCCCC------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHhc------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 543222 2355666666666666666666666655432 3445555555666555555554
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 040027 267 EMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLD 301 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 301 (595)
.....| -++....++.-.|+.++..+++.
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 444432 13334444445555555555544
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.68 E-value=0.036 Score=34.18 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
|..+..+|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444555555555555554444
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.67 E-value=0.74 Score=45.38 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=85.2
Q ss_pred HHhCCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040027 357 YCKNKEVEEALSLYR--EMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYII 434 (595)
Q Consensus 357 ~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 434 (595)
..-.++++++.+..+ ++... + .......++.-+.+.|-++.|+.+.. |+.+ -.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHH
Confidence 344566666655554 11111 1 23345566666667777777766532 2221 123345677777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040027 435 EAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDME 514 (595)
Q Consensus 435 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (595)
.|.++.++ ..+...|..|......+|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 77666543 23666788888888888888888888777664 4556666777777777777766666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 515 ENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 515 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
..| . ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred Hcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 654 1 334444555667777666665443
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.66 E-value=0.22 Score=38.41 Aligned_cols=89 Identities=18% Similarity=0.056 Sum_probs=37.7
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChh
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV---ITFDMLIHGFIRINEPS 539 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 539 (595)
...|+.+.|++.|.+.+.. .+.+...||.-..++.-.|+.++|++-++++++..-+... ..|..-...|...|+-+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3444555555555444441 1123444455555555555555555555544443111111 11222233344445555
Q ss_pred HHHHHHHHHHHCC
Q 040027 540 KVNELLHKMKEKK 552 (595)
Q Consensus 540 ~A~~~~~~~~~~~ 552 (595)
.|..-|+.+.+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555444443
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.96 Score=37.05 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=22.0
Q ss_pred HcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 219 KEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 219 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
..|.+++.....+.+...+-+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443333222233333344444444555555555544443
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.58 E-value=1.6 Score=38.94 Aligned_cols=200 Identities=20% Similarity=0.099 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 040027 313 CTYNTLMDGFCLMGKINRAEELFGSMESM-GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL- 390 (595)
Q Consensus 313 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 390 (595)
.........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444445555555555555555554431 112333344444455555555555555555555432221 111111112
Q ss_pred HHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCC
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGV--AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCEL-DIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 467 (595)
.+...|+++.+...+........ ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 44555555555555555533210 0112222222223444555555655555555443 22 24445555555555555
Q ss_pred hHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 468 LKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 468 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
++.|...+..... ..|+ ...+..+...+...+..+.+...+.+....
T Consensus 218 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555554 2222 223333333333444455555555555543
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.55 E-value=0.43 Score=43.95 Aligned_cols=228 Identities=12% Similarity=0.121 Sum_probs=135.3
Q ss_pred HHHcCCHhHHHHHHHHHhhCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC---CHhhHHHHHHHHHh
Q 040027 217 LCKEGFVDKAKALFLQMKDEN--INPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQ--GVQP---SVVTFNVIMDELCK 289 (595)
Q Consensus 217 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~ 289 (595)
+....+.++|+..|.+...+- ...-..++..+..+..+.|.+++++..--..++- .... --..|..+.+.+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777776655431 1112345566667778888877766543221110 0011 12345566666666
Q ss_pred cCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhC
Q 040027 290 NRKMDEASRLLDLMVQR-GVRP---NACTYNTLMDGFCLMGKINRAEELFGSMESMGCK-----HDDVSYNILINGYCKN 360 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 360 (595)
.-++.+++.+-..-... |..+ .-.....+..++...+.++++.+.|+...+.... ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777766655543 2222 1233445777888888899999999887653211 1224678888999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHHH-----HHHHHHHHHccCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHH
Q 040027 361 KEVEEALSLYREMVSK----GIKPTVVT-----YNTLFLGLFEIHQVEHALKLFDEMQR----DGVA-ADTRTYTTFIDG 426 (595)
Q Consensus 361 ~~~~~A~~~~~~~~~~----~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~ 426 (595)
.++++|.-...+..+. ++..-... ...+.-++...|....|.+.-++..+ .|-. ........+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999988777665442 22211111 22333456667777777777666544 2322 122345566778
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 040027 427 LCKNGYIIEAVELFRTLR 444 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~ 444 (595)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888899999888888765
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.54 E-value=1.7 Score=42.29 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 417 TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCE-LDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
..+-..+..++.+.|+.++|++.++++.+.... ....+...|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333344555566677777777777777654311 1334566677777777777777777777654
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.53 E-value=0.36 Score=44.38 Aligned_cols=229 Identities=12% Similarity=0.070 Sum_probs=140.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHh
Q 040027 252 LCHANDWNEAKRLFIEMMDQG--VQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQ----R-GVRPNACTYNTLMDGFCL 324 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~ 324 (595)
+....+.++|+..|.+.+..- ...-..++..+..+..+.|.+++++..--..++ . .-..--..|..+.+.+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788887777665531 111233556667778888888877654322111 1 001112345556666666
Q ss_pred cCCHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHcc
Q 040027 325 MGKINRAEELFGSMESM-GCKH---DDVSYNILINGYCKNKEVEEALSLYREMVSKG-----IKPTVVTYNTLFLGLFEI 395 (595)
Q Consensus 325 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 395 (595)
..++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+...+.- .......+..+...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777666554432 1111 11234456778888889999999999877631 112335677788888999
Q ss_pred CCHHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CcCHHHHHHHHHH
Q 040027 396 HQVEHALKLFDEMQR----DGVAADTRTY-----TTFIDGLCKNGYIIEAVELFRTLRIL----KC-ELDIQAYNCLIDG 461 (595)
Q Consensus 396 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~ 461 (595)
.|++++.-......+ .++..-..-| ..+.-++...|++-.|.+.-++..+. |- .........+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999877665543 2322222222 23344567788888888888877643 31 2234455677888
Q ss_pred HHhcCChHHHHHHHHhccc
Q 040027 462 LCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~ 480 (595)
|...|+.+.|+.-|+++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999888887543
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.34 Score=43.09 Aligned_cols=90 Identities=17% Similarity=0.060 Sum_probs=43.3
Q ss_pred hcCCHhHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc
Q 040027 143 AESRIMEAAALFTKLKAFGCE--PNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE 220 (595)
Q Consensus 143 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (595)
+.|++..|...|...++.... -...++.=|..++...|+++.|..+|..+.+..+. .+.-+..+..|..+..+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~----s~KApdallKlg~~~~~l 228 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK----SPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC----CCCChHHHHHHHHHHHHh
Confidence 344455555555555544211 11223333455555555555555555555544321 122234455555555555
Q ss_pred CCHhHHHHHHHHHhhC
Q 040027 221 GFVDKAKALFLQMKDE 236 (595)
Q Consensus 221 g~~~~A~~~~~~~~~~ 236 (595)
|+.++|..+|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 5555555555555554
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=1.2 Score=36.50 Aligned_cols=137 Identities=14% Similarity=0.085 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHh---hH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAAT-FNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVI---TY 169 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 169 (595)
.+...|...+. +.+.|..++|+.-|..+.+.|...-+.. ...+.....+.|+...|+..|+++-.....|-.. ..
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556665554 5677899999999999999876543332 2344555778999999999999998753333222 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN 237 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 237 (595)
..-.-.+...|.++......+-+...+ .+.....-..|.-+-.+.|++.+|.++|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~------n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDG------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCC------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 222334567899998888888776554 34445666778888889999999999999988753
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.41 E-value=1 Score=36.76 Aligned_cols=104 Identities=19% Similarity=0.137 Sum_probs=47.4
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNVVTY-NIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
...++.+++..+++.+.- +.|..... ..-...+...|+|.+|+.+|+++.+.. |....-..|+..|.....-..-
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHH
Confidence 345566666666666655 44543222 222344556666666666666655542 2222222333333322222233
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040027 542 NELLHKMKEKKVMPDASIVSIVVDLLVKNEI 572 (595)
Q Consensus 542 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 572 (595)
..+-+++.+.+ +|+.+...+-..+.+.+.
T Consensus 97 r~~A~evle~~--~d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 97 RRYADEVLESG--ADPDARALVRALLARADL 125 (160)
T ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHhccc
Confidence 33344444433 444444444444444443
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.30 E-value=0.93 Score=36.17 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 318 LMDGFCLMGKINRAEELFGSMESMGC--KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGL 392 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (595)
-.....+.|++++|++.|+.+...-. +....+-..++.+|.+.+++++|+..+++.++..+.....-|...+.++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 34444556666666666666654410 1122344555666666666666666666666654433333344344333
No 263
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=4 Score=41.79 Aligned_cols=108 Identities=8% Similarity=0.099 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGF 532 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (595)
.+.+.-+..+...|+..+|.++-.+.. -||...|-.-+.+++..++|++-+++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344555666777888888888877776 3677777777888888888887665544332 234566677888
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccchH
Q 040027 533 IRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKSLPS 579 (595)
Q Consensus 533 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~i~~ 579 (595)
.+.|+.++|.+++-+... .+ -.+.+|.+.|.+.++++.
T Consensus 755 ~~~~n~~EA~KYiprv~~--l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--LQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhcccHHHHhhhhhccCC--hH-------HHHHHHHHhccHHHHHHH
Confidence 888888888888877642 11 456667777776655544
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.27 E-value=2 Score=38.23 Aligned_cols=223 Identities=19% Similarity=0.074 Sum_probs=157.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 040027 325 MGKINRAEELFGSMESMGCK-HDDVSYNILINGYCKNKEVEEALSLYREMVSK-GIKPTVVTYNTLFLGLFEIHQVEHAL 402 (595)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 402 (595)
.+....+...+......... ............+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665554211 12567777888888999999999988887752 22335566677777778888899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 040027 403 KLFDEMQRDGVAADTRTYTTFID-GLCKNGYIIEAVELFRTLRILKC--ELDIQAYNCLIDGLCKSGRLKFAWELFCSLP 479 (595)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 479 (595)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888753332 122222233 68899999999999999866321 1234444455555677899999999999988
Q ss_pred cCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 480 HGVLVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 480 ~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
.. .++ ...+..+...+...++++.|...+....... +.....+..+...+...+..+++...+++....
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74 333 5778888888899999999999999998863 222455555666666777899999999988864
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.21 E-value=1.7 Score=37.10 Aligned_cols=85 Identities=15% Similarity=0.027 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 040027 110 GRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLF 189 (595)
Q Consensus 110 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (595)
|-+..|+.-|.+.+... |.-+.+||.+.-.+...|+++.|.+.|+...+.+.. ...++..-..++.--|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHH
Confidence 44444445555555442 223556666666667777777777777777766422 2223333333334567777777766
Q ss_pred HHHHhcC
Q 040027 190 EEMANGN 196 (595)
Q Consensus 190 ~~~~~~~ 196 (595)
...-+.+
T Consensus 157 ~~fYQ~D 163 (297)
T COG4785 157 LAFYQDD 163 (297)
T ss_pred HHHHhcC
Confidence 6666554
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.21 E-value=0.57 Score=45.37 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCE-PNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
..+-..+..++.+.|+.++|++.++++.+.... ....+...|+..+...+.+.++..++.+..+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 334456777778899999999999999875322 234577889999999999999999999976543
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1.4 Score=35.76 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=57.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 502 (595)
++..+...+.+.....+++.+...+ ..+....+.++..|++.. ..+....+.. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444455555555555555544 344555555555555432 2333344332 0122223334555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 503 MDKARDLFLDMEENAAAPDVITFDMLIHGFIRI-NEPSKVNELLHKMKEKKVMPDASIVSIVVDLLV 568 (595)
Q Consensus 503 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 568 (595)
++++.-++.++-. +...+..+... ++++.|.+++++- .++..|..++..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 6666555554421 11122222222 5566666655541 24556666655544
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.12 E-value=0.3 Score=44.14 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK-----EKKVMPDASIVSIV 563 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 563 (595)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+++. +.|+.|.+.+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666654 4566666666667777776666666666665 34666666666666
Q ss_pred HHH
Q 040027 564 VDL 566 (595)
Q Consensus 564 ~~~ 566 (595)
.++
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.97 E-value=0.51 Score=36.47 Aligned_cols=91 Identities=20% Similarity=0.037 Sum_probs=63.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCC
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN---VVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 502 (595)
++...|+++.|++.|.+.+..- +.....||.-..++.-+|+.++|+.-+++.++..-... -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566788888888888877654 56777888888888888888888888887776211111 1234444456677888
Q ss_pred hhHHHHHHHHHHHcC
Q 040027 503 MDKARDLFLDMEENA 517 (595)
Q Consensus 503 ~~~A~~~~~~~~~~~ 517 (595)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888887766
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.89 E-value=3.2 Score=38.42 Aligned_cols=169 Identities=7% Similarity=-0.042 Sum_probs=99.3
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIG-RVSLGFIAFG 120 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~ 120 (595)
.++|+.+.|...|.++-...+. .++.....+...|..-| ......+ +++.|...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~-~~~~~~~~La~~~yn~G----------------------~~l~~~~~~~~~a~~wL~ 60 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS-LDPDMAEELARVCYNIG----------------------KSLLSKKDKYEEAVKWLQ 60 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc-CCcHHHHHHHHHHHHHH----------------------HHHHHcCCChHHHHHHHH
Confidence 4679999999999999776632 35555544544333322 2233344 7777777776
Q ss_pred HHHhC----C----CCCCH-----HHHHHHHHHHHhcCCHh---HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 121 RILRS----C----FTPNA-----ATFNSLIKGLHAESRIM---EAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 121 ~~~~~----~----~~~~~-----~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
++.+. + ..++. .++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.++
T Consensus 61 ~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 61 RAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred HHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhH
Confidence 65543 1 12222 35667778888777655 4555666665442 3235566566777777899999
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHH---HHcCCHhHHHHHHHHHhhCCCCCCH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGL---CKEGFVDKAKALFLQMKDENINPDV 242 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 242 (595)
+.+++.+|...- ......+..++..+ ... ....+...++.+....+.|..
T Consensus 140 ~~~~L~~mi~~~-------~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 140 YEEILMRMIRSV-------DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhc-------ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 999999998763 21233444444443 333 334555555555444344443
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.71 E-value=7.9 Score=42.12 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 040027 388 LFLGLFEIHQVEHALKLFDEMQRDGVAADTR----TYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC 463 (595)
Q Consensus 388 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (595)
.+...-++|.+.+|+.++ .|+.. +|.+....+...+.+++|.-+|+..-+. ...+.+|.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333344555555555543 33443 3444444455566777776666654321 23356677
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPNVV--TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
.+|+|++|..+..++.. .-+.. +-..|+.-+...++.-+|-++..+.... |. ..+..|++...|++|
T Consensus 977 ~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHH
Confidence 77888888877777653 11221 2245666677777777777777766542 11 233345566667777
Q ss_pred HHHHHHHH
Q 040027 542 NELLHKMK 549 (595)
Q Consensus 542 ~~~~~~~~ 549 (595)
.++.....
T Consensus 1046 lrva~~~~ 1053 (1265)
T KOG1920|consen 1046 LRVASKAK 1053 (1265)
T ss_pred HHHHHhcc
Confidence 66655443
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.66 E-value=1.9 Score=34.87 Aligned_cols=126 Identities=14% Similarity=0.118 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040027 100 NILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (595)
..++..+.+.+........++.+...+ ..++...+.++..|++.+. ....+.++. ..+......++..+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 356667777778888888888887776 3566777788887776532 333333331 11233344566666667
Q ss_pred CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc-CCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 180 GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE-GFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
+.++++.-++.++.. +...+..+... ++++.|.+.+.+. .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 777777766666522 12233333333 6666666666541 145566666655543
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.61 E-value=2.6 Score=36.11 Aligned_cols=163 Identities=18% Similarity=0.069 Sum_probs=95.8
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCCHhhH
Q 040027 92 LFP-NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGC-EPNVITY 169 (595)
Q Consensus 92 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 169 (595)
+.| -+.+||.+.--+...|+++.|...|+...+..+.-+-...|.-|. +.--|++.-|.+-+...-+.+. +|-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 344 467888888889999999999999999999864433333343333 3345889999887777766532 2222333
Q ss_pred HHHHHHHHhcCChhHHHHHHH-HHHhcCCCCCccccCcHHHHHHHHH-HHHHcCCHhHHHHHHHHHhhCCCC------CC
Q 040027 170 NTLINGLCRTGHTMIALNLFE-EMANGNGEIGVVCKPNTVTYSTIID-GLCKEGFVDKAKALFLQMKDENIN------PD 241 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~------~~ 241 (595)
..+.. +.-++.+|..-+. +.... +..-|...|. .|...=..+ .+++.+...... .-
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~----------d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~L 236 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKS----------DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHL 236 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhc----------cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHH
Confidence 33322 4456667765443 33332 3344443332 232222222 233333321100 01
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040027 242 VVTYNSLIHGLCHANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 242 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 271 (595)
+.||--|...+...|+.++|..+|+-.+..
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 456777788888888888888888877764
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.50 E-value=0.072 Score=30.52 Aligned_cols=30 Identities=13% Similarity=0.396 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh
Q 040027 54 FDYMLRMHPSPPPVSSFNILLASLAKNKHYDT 85 (595)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (595)
|+++++.+|+ ++.+|+.+...|...|++++
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHh
Confidence 7788999998 88888888888777777653
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.48 E-value=0.51 Score=42.68 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cCCCCCHhhHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKA-----FGCEPNVITYNT 171 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 171 (595)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345567777788888888888888888875 56788888888888888888888888888765 467777666655
Q ss_pred HHHH
Q 040027 172 LING 175 (595)
Q Consensus 172 l~~~ 175 (595)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 276
>PRK09687 putative lyase; Provisional
Probab=94.36 E-value=4.2 Score=37.50 Aligned_cols=203 Identities=11% Similarity=0.047 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHCCCCCC
Q 040027 346 DDVSYNILINGYCKNKEV----EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQV-----EHALKLFDEMQRDGVAAD 416 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 416 (595)
+...-...+.++.+.|+. +++...+..+... .++.......+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555555332 23444444444444433211 122222222222 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 040027 417 TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSG-RLKFAWELFCSLPHGVLVPNVVTYNIMIQ 495 (595)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 495 (595)
..+-...+.++.+.++ .++...+-.+.+ .++.......+.++...+ +...+...+..+.. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5566666677776665 455666666554 445556666666666543 24456666666664 456666667777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 496 GLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|...+..+.+. .||..+....++++.+
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 7777777 46677666666643 2 234567777777774 688888888763 3577777777766653
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.34 E-value=5.3 Score=38.60 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 105 CFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
.+...|.++.+.+.+..+.+. ......+...+++...+.|++++|..+-+-|+...++ ++++........-+.|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666666554443 1223444455666666666666666666666655444 33333322223334455566
Q ss_pred HHHHHHHHHhcC
Q 040027 185 ALNLFEEMANGN 196 (595)
Q Consensus 185 A~~~~~~~~~~~ 196 (595)
+.-.++++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 666666655544
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.97 E-value=0.6 Score=41.46 Aligned_cols=106 Identities=13% Similarity=0.219 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHh-----cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 040027 450 LDIQAYNCLIDGLCK-----SGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVIT 524 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 524 (595)
-|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..-. |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HH
Confidence 345555555555542 244555555556666666666666666666554322110 10 11
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 525 FDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 525 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
|....--|-+ .-+-+.+++++|..+|+-||.++-..++.++.+.|-.-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 1111111111 12446677777777777777777777777776666544
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.72 E-value=13 Score=40.69 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhcCCCCCHhhHH----HH
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRS-C--FTPNAATFNSLIKGLHAE-SRIMEAAALFTKLKAFGCEPNVITYN----TL 172 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~----~l 172 (595)
.-++.+...+++.+|..+.++-.-. + +.-++..+..-+.++.+. ++.+--..++..+...++. ...|. +-
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvt--k~~y~~~~~s~ 759 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVT--KTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhh--hhhcccccccc
Confidence 4566677788888888887765422 1 122344555555555553 4444444444444432211 11111 11
Q ss_pred HHHHHhc----CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC--CHhHHHHHHHHHhh
Q 040027 173 INGLCRT----GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG--FVDKAKALFLQMKD 235 (595)
Q Consensus 173 ~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 235 (595)
...|... .+.+...+.+.....+. .|+ .....++..|.+.+ .++.+.....+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~~-------~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALERR-------APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhhc-------Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 0111111 22333444444444443 344 44556777888876 56666666666553
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.68 E-value=0.094 Score=30.03 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=17.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040027 510 FLDMEENAAAPDVITFDMLIHGFIRINEPSKVN 542 (595)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (595)
|+++++.. |.+...|..++..|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 445566666666666666666554
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.49 E-value=1.8 Score=36.68 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-CHhhHH--
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN--AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-NVITYN-- 170 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-- 170 (595)
...+..++..|.+.|+.+.|++.|.++......+. ...+..+++.....+++..+.....++...-... |....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677899999999999999999999988754433 4467888999999999999998888776542121 222221
Q ss_pred HH--HHHHHhcCChhHHHHHHHHHHhc
Q 040027 171 TL--INGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 171 ~l--~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
.. ...+...+++..|-+.|-.....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 11 22334578999999988777644
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.27 E-value=1.2 Score=37.78 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHH--H
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAA-PDVITFD--M 527 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~--~ 527 (595)
..+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++...-.. .|...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456677777777777777777777776544433 345566777777777887777777766543111 1111111 1
Q ss_pred H--HHHHHHcCChhHHHHHHHHHH
Q 040027 528 L--IHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 528 l--~~~~~~~g~~~~A~~~~~~~~ 549 (595)
. +-.+...+++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 223356778888887776665
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.14 E-value=0.23 Score=28.88 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
+|..++..|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888855
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.11 E-value=0.33 Score=44.24 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=35.8
Q ss_pred HHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 040027 462 LCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 540 (595)
|.++|.+++|+..|..... ..| |+.++..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|+..+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4444555555555444443 233 44444444444444444444444444443321 1112223333333333444444
Q ss_pred HHHHHHHHHH
Q 040027 541 VNELLHKMKE 550 (595)
Q Consensus 541 A~~~~~~~~~ 550 (595)
|.+-++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 4444444443
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.05 E-value=3.5 Score=32.24 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTL 443 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~ 443 (595)
....+..+|.+.|+..++.+++.++
T Consensus 122 ~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 122 FLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3333333333333333333333333
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.99 E-value=0.24 Score=28.77 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888899999999999888553
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.74 E-value=14 Score=38.27 Aligned_cols=177 Identities=12% Similarity=0.009 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHhHHHHHHHHHHh-------cCCCCCHhhHHHHHHHHHhc
Q 040027 112 VSLGFIAFGRILRSCFTPNAATFNSLIKG-----LHAESRIMEAAALFTKLKA-------FGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 112 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 179 (595)
...|...++...+.| +......+..+ +....+.+.|+..|..+.. .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888877765 33332222222 3345678888888887766 44 334556666666653
Q ss_pred C-----ChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc---CCHhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 040027 180 G-----HTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE---GFVDKAKALFLQMKDENINPDVVTYNSLIHG 251 (595)
Q Consensus 180 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 251 (595)
. +.+.|+.++.+....+ .|+.. ..+..++... .+...|.++|....+.|. ...+-.+..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~ 369 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALC 369 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHH
Confidence 3 5566777777777665 23332 2233333322 356778888888777763 2222223322
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040027 252 LCH----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGV 308 (595)
Q Consensus 252 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 308 (595)
|.. ..+...|..++.+..+.|. |........+..+.. +.++.+.-.+..+...|.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 222 3367777777777777652 221111222223333 666666666665555543
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.46 E-value=0.34 Score=27.59 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+|..++.+|...|++++|...++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.42 E-value=9.2 Score=35.55 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCC--
Q 040027 259 NEAKRLFIEMMDQGVQPSVVTFNVIMDELCK--NR----KMDEASRLLDLMVQRGVR---PNACTYNTLMDGFCLMGK-- 327 (595)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 327 (595)
++.+.+++.+.+.|+.-+..++......... .. ....+..+|+.|.+...- ++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4445666777777776665555443322222 11 245577777777775321 223333333222 2233
Q ss_pred --HHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 328 --INRAEELFGSMESMGCKHDDV--SYNILINGYCKNKE--VEEALSLYREMVSKGIKPTVVTYNTLF 389 (595)
Q Consensus 328 --~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 389 (595)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 345566666666656544333 22222322222111 346667777777777766655554443
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.41 E-value=15 Score=37.96 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=101.8
Q ss_pred HhHHHHHHHHHhhCCCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhc
Q 040027 223 VDKAKALFLQMKDENINPDVVTYNSLIHG-----LCHANDWNEAKRLFIEMMD-------QGVQPSVVTFNVIMDELCKN 290 (595)
Q Consensus 223 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 290 (595)
...|.++++...+.| +...-..+..+ +....+.+.|+.+|..+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 33333333333 3345689999999988876 43 333455666666664
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 040027 291 R-----KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM---GKINRAEELFGSMESMGCKHDDVSYNILINGYCK--- 359 (595)
Q Consensus 291 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 359 (595)
. +.+.|..+|.+....|.+ +.. ..+..++... .+...|.++|......| ...++-.+..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCC
Confidence 3 556688888888777533 332 2233333332 35678888888887776 23333344444432
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 360 -NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 360 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
..+...|..++.+..+.|. |...-....+..+.. ++++.+.-.+..+...+
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3467778888888777762 222212222222233 56666665555555543
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.17 E-value=2.8 Score=34.88 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
++|.+.|+++.+. .|+...|..-+.
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 3344444444442 355555544443
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.16 E-value=0.38 Score=27.28 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+..++.+|...|++++|.+.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555666666655555554
No 293
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.03 E-value=13 Score=36.44 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhcCCCCCHhhHH
Q 040027 92 LFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHA-ESRIMEAAALFTKLKAFGCEPNVITYN 170 (595)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (595)
...|+..|...+..+.+.+.+.+...+|.+|+... +.++..|-........ +-+++.|..+|.+.++.+.. ++..|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHH
Confidence 44599999999999999999999999999999885 5677777666555444 44599999999999887422 455554
Q ss_pred HHH
Q 040027 171 TLI 173 (595)
Q Consensus 171 ~l~ 173 (595)
..+
T Consensus 179 eyf 181 (568)
T KOG2396|consen 179 EYF 181 (568)
T ss_pred HHH
Confidence 433
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.93 E-value=5 Score=31.41 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKV 553 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 553 (595)
..+...+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.++++++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334444555556666666666666655432 55666666666666666666666666666666653
No 295
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.79 E-value=1.9 Score=38.47 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 148 MEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 148 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
+-+++++++|...|+.||.++-..|+.++.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 45889999999999999999999999999877653
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.74 E-value=2.4 Score=35.77 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=23.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 495 QGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.++.+.+.++.|++-..++++.+ +-....+..-..+|.+..++++|+.-|+++++
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444432 11122222333344444444444444444444
No 297
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.72 E-value=9.9 Score=34.39 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK-----EKKVMPDASIVS 561 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~ 561 (595)
++......|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.+.+-++++. +.|+..|..++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34555678889999999999999999875 6778888999999999999888888888775 457777766554
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.19 E-value=5.3 Score=33.82 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=72.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPNA----ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
=..-++..|++++|..-|.+++...++... ..|..-..++.+.+.++.|+.-..+.++.+.. ...+...-..+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 345678899999999999999998533222 23555567788999999999999999887633 4444455567888
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 040027 178 RTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~ 196 (595)
+...+++|++-|.++...+
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8999999999999999865
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.59 E-value=0.7 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRS 125 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (595)
.|..+...+...|++++|+..|+++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4445555555566666666666655544
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.39 E-value=19 Score=35.42 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=141.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 43 NVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRI 122 (595)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 122 (595)
+++-.+....+.++.+....+ .-...|-.-+..|.+. ..|-....+++..+.+...+.-...+..++
T Consensus 26 ~~~~~~~~~~ic~~hl~~~k~-si~~lyisg~~~~s~~------------~l~d~~l~~~~~~f~~n~k~~~veh~c~~~ 92 (711)
T COG1747 26 RQSILDVLKGICDEHLAHSKN-SIIALYISGIISLSKQ------------LLDDSCLVTLLTIFGDNHKNQIVEHLCTRV 92 (711)
T ss_pred HhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhc------------cccchHHHHHHHHhccchHHHHHHHHHHHH
Confidence 445555556666666655444 1223333333333333 235566778889999988999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc
Q 040027 123 LRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVV 202 (595)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 202 (595)
+.-| .+--.+..++..|..+ ..+.-..+|+++.+..+. |...-..|+..|.+ ++.+.+...|.++..+-
T Consensus 93 l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf------ 161 (711)
T COG1747 93 LEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRF------ 161 (711)
T ss_pred HHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh------
Confidence 9874 4667788899999988 557888999999988654 55555666666655 88889999998887653
Q ss_pred ccC--c---HHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040027 203 CKP--N---TVTYSTIIDGLCKEGFVDKAKALFLQMKDE-NINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPS 276 (595)
Q Consensus 203 ~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 276 (595)
++. + ...|..+...- ..+.+....+..++... |...-...+.-+-.-|....++.+|++++..+++..-+ |
T Consensus 162 I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~ 238 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-D 238 (711)
T ss_pred cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-h
Confidence 221 1 23455554322 34667777777666553 22223444555556788889999999999988876432 4
Q ss_pred HhhHHHHHHH
Q 040027 277 VVTFNVIMDE 286 (595)
Q Consensus 277 ~~~~~~l~~~ 286 (595)
..+-..++..
T Consensus 239 ~~ar~~~i~~ 248 (711)
T COG1747 239 VWARKEIIEN 248 (711)
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.36 E-value=15 Score=34.15 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=81.8
Q ss_pred HhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCh
Q 040027 223 VDKAKALFLQMKDENINPDVVTYNSLIHGLCH--AN----DWNEAKRLFIEMMDQGV---QPSVVTFNVIMDELCKNRKM 293 (595)
Q Consensus 223 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 293 (595)
+++...+++.+.+.|+.-+..+|.+....... .. ....+..+|+.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788889999888777666553333332 22 35678999999988631 2344455555433 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040027 294 ----DEASRLLDLMVQRGVRPNAC--TYNTLMDGFCLMGK--INRAEELFGSMESMGCKHDDVSYNILINGYCK 359 (595)
Q Consensus 294 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (595)
+.+..+|+.+.+.|...+-. ....++........ ...+..+++.+.+.+++.....|..+.-...-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 56778888888877664432 22222222221111 45788889999999988877776665544333
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.32 E-value=0.78 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRS 125 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (595)
.+|..++..+...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34555566666666666666666666554
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.30 E-value=17 Score=34.52 Aligned_cols=121 Identities=7% Similarity=-0.025 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 040027 52 CIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA 131 (595)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 131 (595)
.-|++.++.+|. |+.+|-.++.---..-.... +. .-....-.+.-+.+++++++.+ +.+.
T Consensus 6 ~el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~---------~~--------~~~~~a~~E~klsilerAL~~n-p~~~ 65 (321)
T PF08424_consen 6 AELNRRVRENPH--DIEAWLELIEFQDELFRLQS---------SS--------KAERRALAERKLSILERALKHN-PDSE 65 (321)
T ss_pred HHHHHHHHhCcc--cHHHHHHHHHHHHHhccccc---------cc--------hhhHHHHHHHHHHHHHHHHHhC-CCCH
Confidence 567888999998 99999888854322211110 00 1111223456678888888884 4677
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---cCChhHHHHHHHHHH
Q 040027 132 ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR---TGHTMIALNLFEEMA 193 (595)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 193 (595)
..+..++..+.+.-+.++..+.++++.... +-+...|...+..... .-.++....+|.+..
T Consensus 66 ~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 66 RLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 778888888888888888889999998873 3367777777665543 224555555555544
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.18 E-value=7.8 Score=31.21 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
.++++++..++..+.-.. |.....-..-+..+...|++++|.++|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 445555555555444332 11122222222333444555555555555444
No 305
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.15 E-value=20 Score=35.13 Aligned_cols=111 Identities=12% Similarity=0.014 Sum_probs=75.7
Q ss_pred HHHHhcCChHHHHHHHHhccc---CC--CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCC---
Q 040027 460 DGLCKSGRLKFAWELFCSLPH---GV--LVPN---VVTYNIMIQGLCNDGQMDKARDLFLDMEE-------NAAAPD--- 521 (595)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~---~~--~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~--- 521 (595)
..+...|++.+|.+++...-- .| +.|. -..||.|...+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888888765422 11 2221 23457777777778888888888877764 243332
Q ss_pred -------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 522 -------VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 522 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
..+.....-.|...|++-.|.+.|.+.... +..++..|-.+..+|..+.
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHh
Confidence 223344566788999999999999998864 5678899999999887643
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.07 E-value=10 Score=31.59 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 040027 154 FTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNL 188 (595)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 188 (595)
.+.+...+++++...+..++..+.+.|++.....+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444445555555555555555555554444333
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.90 E-value=28 Score=36.59 Aligned_cols=135 Identities=12% Similarity=-0.029 Sum_probs=62.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh---HHhhC-CCCCCHHHHHHHHHHHHhcCChhH
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT---RLNAT-GLFPNLYTYNILINCFCKIGRVSL 114 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 114 (595)
...++.|++..+..+-..+ +..|- ..-..|..+...+. ...+++ .+... +.+.....-...+..+.+.+++..
T Consensus 41 ~~a~~~g~~~~~~~~~~~l-~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTL-KDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHCCCHHHHHHHHHhc-cCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 3346677777776655544 23332 22233433333222 222333 12221 222233333444445555566665
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 115 GFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 115 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
.+..+. . .+.+.......+.+....|+.++|.+..+.+-..|.. .+.....++..+.+.|..
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 554221 1 1334444455566666667666666555555444422 344555555555544433
No 308
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=89.61 E-value=28 Score=36.15 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTK 156 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 156 (595)
+.-|+ .+..+.-+|.+++|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 33443 56666677777777777643
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.46 E-value=11 Score=31.02 Aligned_cols=53 Identities=19% Similarity=-0.031 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG 481 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 481 (595)
.+.++.+++..++..+.-.. |.....-..-+..+...|++.+|+.+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45677777887777776553 323333333445566778888888888887663
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.22 E-value=22 Score=34.26 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 249 IHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
..+.-+.|+|+...+........ .++...+..+.. ...++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLA--LRQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence 45667778888744444333221 123333333332 277888887777776655
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.19 E-value=6.9 Score=29.00 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=23.8
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 470 FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++|+-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455544455556655556666666666666666666555543
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.97 E-value=7.1 Score=28.95 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
+..+-++.+...++-|++.+....+.+|.+.+++.-|.++++-...+ ..+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 45555666666667777777777777777777777777777777643 122223666655543
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.90 E-value=13 Score=31.46 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=56.1
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCCCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 459 IDGLCKSGRLKFAWELFCSLPHGVLVPNVVTY-----NIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
...+...|++++|...++..... |....+ ..|.+.....|.+++|+..++...+.+ ........-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHH
Confidence 44566777777777777766642 222222 234456667777888877777665542 22333455567777
Q ss_pred HcCChhHHHHHHHHHHHCC
Q 040027 534 RINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~~~ 552 (595)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7888888888888887654
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.84 E-value=0.016 Score=47.38 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 502 (595)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .. ...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHHHHHHhcch
Confidence 3444555666666666777776555455567777777777777666776666663322 11 1234455555666
Q ss_pred hhHHHHHHHH
Q 040027 503 MDKARDLFLD 512 (595)
Q Consensus 503 ~~~A~~~~~~ 512 (595)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.75 E-value=3.4 Score=30.19 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=28.5
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 470 FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
++.+-++.+....+.|++.+..+.+++|.+.+|+.-|+++|+-...+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655543
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.66 E-value=34 Score=35.88 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAE 144 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (595)
+...| .++-.|.|+|.+++|.++....... .......+...+..|...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 44556 4666788889999998888444433 244445566666666553
No 317
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.63 E-value=26 Score=34.49 Aligned_cols=82 Identities=15% Similarity=-0.008 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHH
Q 040027 113 SLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING-LCRTGHTMIALNLFEE 191 (595)
Q Consensus 113 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 191 (595)
.....+|+.+..+ +..|+..|...+..+.+.+.+.+...+|.+|.... +.++..|-.-..- |...-+++.|..+|..
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4556777777766 46699999999998888888999999999999874 3355555544333 3334459999999999
Q ss_pred HHhcC
Q 040027 192 MANGN 196 (595)
Q Consensus 192 ~~~~~ 196 (595)
.++.+
T Consensus 166 gLR~n 170 (568)
T KOG2396|consen 166 GLRFN 170 (568)
T ss_pred HhhcC
Confidence 99876
No 318
>PRK09687 putative lyase; Provisional
Probab=88.59 E-value=20 Score=33.11 Aligned_cols=232 Identities=11% Similarity=0.019 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----hHHHHHHHHHHhcCCCCCHhhH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRI----MEAAALFTKLKAFGCEPNVITY 169 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 169 (595)
+|.......+..+...|. +++...+..+.+ .+|...-...+.++.+.|.. .++...+..+... +++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444455555555555543 223333333332 22444444455555555542 3445555544322 3444555
Q ss_pred HHHHHHHHhcCCh-----hHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhH
Q 040027 170 NTLINGLCRTGHT-----MIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVT 244 (595)
Q Consensus 170 ~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 244 (595)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++...
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---------D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~V 175 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---------DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDV 175 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---------CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHH
Confidence 4444444443321 122232222222 1234444455555555554 3444444444432 23333
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 245 YNSLIHGLCHAN-DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC 323 (595)
Q Consensus 245 ~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (595)
-...+.++.+.+ +...+...+..+... ++..+-...+.++.+.|+. .+...+-...+.+ + .....+.+..
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 333333444332 123444444444432 3444555555555565553 3444444444332 1 1233455555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040027 324 LMGKINRAEELFGSMESMGCKHDDVSYNILING 356 (595)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (595)
..|+. ++...+..+.+. .+|...-...+.+
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 55553 466666665543 2344444444433
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.49 E-value=24 Score=33.91 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040027 283 IMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMES 340 (595)
Q Consensus 283 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 340 (595)
...+..+.|+++...++....... .++...+..+... ..++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356777888888855555544322 1233344433332 77888888887777654
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.40 E-value=8.4 Score=32.92 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=39.8
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCChhHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN---AAAPDVITFDMLIHGFIRINEPSKVN 542 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (595)
+.|.+.|-.+...+.--++.....|+..|. ..|.++++.++.++++. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555544433334444444444443 45666666666666653 22455666666666666666666654
No 321
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.38 E-value=17 Score=35.49 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=22.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC 463 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (595)
.|...|++-.|.+.|.+....- ..++..|..+..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 4555666666666666665432 445666666666664
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=65 Score=38.64 Aligned_cols=152 Identities=10% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
.+.++-.+++.+.+|...++....... ......+..+...|..-+++|....+...-.. .|+ ....+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 677788899999999999998521110 11122334444588889999988877764211 222 3344556678
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHH-HHHHhcCC
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLI-HGLCHAND 257 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~ 257 (595)
.|++..|...|+.+.+.+ ++....++.++......|.++...-..+-.... ..+....|+.+. .+--+.++
T Consensus 1462 ~g~~~da~~Cye~~~q~~-------p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-------PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-------CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcc
Confidence 899999999999999876 455667777777777778887777655554443 233344444433 44456667
Q ss_pred HHHHHHHHH
Q 040027 258 WNEAKRLFI 266 (595)
Q Consensus 258 ~~~A~~~~~ 266 (595)
|+.......
T Consensus 1534 wD~~e~~l~ 1542 (2382)
T KOG0890|consen 1534 WDLLESYLS 1542 (2382)
T ss_pred hhhhhhhhh
Confidence 666655543
No 323
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.28 E-value=15 Score=31.21 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=40.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
..+...|++++|...++........ ......+-..|.+.....|.+|+|..+++.....+. .......-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~D----e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKD----ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchh----HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 3444555555555555554432100 000011122233445555555555555555544321 1112222334555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 040027 254 HANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~ 271 (595)
..|+-++|..-|.+.+..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 555555555555555554
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.27 E-value=18 Score=32.26 Aligned_cols=206 Identities=12% Similarity=0.080 Sum_probs=126.8
Q ss_pred CCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--
Q 040027 272 GVQPSVVTFNVIMDE-LCKNRKMDEASRLLDLMVQRGVRPN---ACTYNTLMDGFCLMGKINRAEELFGSMESM---G-- 342 (595)
Q Consensus 272 ~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-- 342 (595)
+-.||+..-+..-.. -.+...+++|+.-|++.++...... -.....++..+.+.+++++....|.++... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665544432221 1234578899999999887532222 334556788889999999999988887532 1
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC----
Q 040027 343 CKHDDVSYNILINGYCKNKEVEEALSLYREMVSK--GIK---PTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGV---- 413 (595)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 413 (595)
-..+..+.+.++.......+.+--...|+.-+.. ..+ .-..|-..+...|...+.+.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1234556777777777777777666666543321 011 1112335677778888888888888888876411
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHH----HHHHhcCChHHHHHHHHh
Q 040027 414 AAD-------TRTYTTFIDGLCKNGYIIEAVELFRTLRILK-CELDIQAYNCLI----DGLCKSGRLKFAWELFCS 477 (595)
Q Consensus 414 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 477 (595)
..| ..+|..-|+.|..+.+-.+-..+|++.+... --|.+.+...+- .+..+.|++++|-.-|-+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHH
Confidence 111 2466667778888888888888888776422 134555444332 234567888877654433
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.19 E-value=3.8 Score=34.15 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 504 DKARDLFLDMEENAAAPD-VITFDMLIHGFIRINE-----------PSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
++|+.-|++++.. .|+ ..++..++.+|...+. +++|...|+++.+ ..|+...|..-++...++-
T Consensus 52 edAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 52 EDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhhH
Confidence 3444455555553 344 4566666666654432 5677777777776 5699999999888887654
Q ss_pred ccc
Q 040027 572 ISL 574 (595)
Q Consensus 572 ~~~ 574 (595)
.+-
T Consensus 128 ~lh 130 (186)
T PF06552_consen 128 ELH 130 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.23 E-value=1.6 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 523 ITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667788888888888888888888763
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.17 E-value=9.8 Score=32.55 Aligned_cols=82 Identities=11% Similarity=-0.091 Sum_probs=57.9
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC
Q 040027 142 HAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG 221 (595)
Q Consensus 142 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 221 (595)
+.+-.-++|.+.|-.+...+.--++.....|+..|. ..+.++++.++-...+...+. -.+|+..+..|+..+.+.|
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhc
Confidence 334333778888888887765545666666655554 678889999888887754321 2567888888888888888
Q ss_pred CHhHHH
Q 040027 222 FVDKAK 227 (595)
Q Consensus 222 ~~~~A~ 227 (595)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888774
No 328
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=5.9 Score=34.62 Aligned_cols=120 Identities=13% Similarity=-0.055 Sum_probs=72.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChhH
Q 040027 427 LCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVV-TYNIMIQGLCNDGQMDK 505 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 505 (595)
|....++..|+..|.+.+..+ |..+.-|..=+.++.+..+++.+..--.+.++ +.||.. ...-+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 455567777888777777654 33335556666677777888877777777766 566643 33445556666777888
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 506 ARDLFLDMEEN----AAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 506 A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
|+..+.++.+. .+++...+...|..+=-..=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88887777442 334444555555544333333445555555443
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.98 E-value=44 Score=35.20 Aligned_cols=435 Identities=10% Similarity=0.014 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hcCCCCC--HhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCccc
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLK-AFGCEPN--VITYNTLINGLC-RTGHTMIALNLFEEMANGNGEIGVVC 203 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (595)
+.+...|..+|.. |++.++.+. ...++|. ..++..++..+. ...+++.|...+++........+. .
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-T 96 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-H
Confidence 3455566666643 566676666 3333332 344556666666 577888898888877654421000 0
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC----CCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCC-CCC-
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN----INPDVVTYNSL-IHGLCHANDWNEAKRLFIEMMDQGV-QPS- 276 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~~-~~~- 276 (595)
.-.-..-..++..+.+.+... |...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+...-. ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 001122334566666666655 888777765531 11112223333 2333334788888888887765421 122
Q ss_pred -HhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhc-
Q 040027 277 -VVTFNVIMDEL--CKNRKMDEASRLLDLMVQRG---------VRPNACTYNTLMDGF--CLMGKINRAEELFGSMESM- 341 (595)
Q Consensus 277 -~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~- 341 (595)
...+..++.+. ...+..+++.+.++.+.... ..|...++..++..+ ...|+++.+...++.+.+.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23333333333 34555667777776663321 123445555555544 4567766666665554321
Q ss_pred ----CCC-------------------------CCHH---------HHHHHHHH--HHhCCCHHHHHH-------HHHHHH
Q 040027 342 ----GCK-------------------------HDDV---------SYNILING--YCKNKEVEEALS-------LYREMV 374 (595)
Q Consensus 342 ----~~~-------------------------~~~~---------~~~~l~~~--~~~~~~~~~A~~-------~~~~~~ 374 (595)
..+ +... ....++.+ ....+..+.|.+ ..++..
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 000 0010 11111221 223344434444 444444
Q ss_pred -HCCCCCCH--------HHHHHHHH---------HHHccCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHH
Q 040027 375 -SKGIKPTV--------VTYNTLFL---------GLFEIHQVEHALKLFDEMQRDGV-AAD-------TRTYTTFIDGLC 428 (595)
Q Consensus 375 -~~~~~~~~--------~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~ 428 (595)
.....+.. ..|...+. ...-.+++..+...+..+.+... .|+ +.++....-.+.
T Consensus 336 ~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q 415 (608)
T PF10345_consen 336 IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ 415 (608)
T ss_pred ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH
Confidence 11111110 11211211 22457889999999998886411 111 222333333455
Q ss_pred hcCCHHHHHHHHH--------HHHHcCCCcCHHHHHH--HHHHHHhcC--ChHH--HHHHHHhcccC-CCCC--CHHHHH
Q 040027 429 KNGYIIEAVELFR--------TLRILKCELDIQAYNC--LIDGLCKSG--RLKF--AWELFCSLPHG-VLVP--NVVTYN 491 (595)
Q Consensus 429 ~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~--l~~~~~~~g--~~~~--A~~~~~~~~~~-~~~p--~~~~~~ 491 (595)
..|+.+.|...|. .....+...+..++.. ++..+...+ +.++ +..+++.+... .-.| +..++.
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~ 495 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAY 495 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHH
Confidence 6799999999998 3333333333333332 222222222 2333 77777776552 1223 233444
Q ss_pred HHH-HHHHhcC--ChhHHHHHHHHHHHc---CCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C--CHHH
Q 040027 492 IMI-QGLCNDG--QMDKARDLFLDMEEN---AAAPDV---ITFDMLIHGFIRINEPSKVNELLHKMKEKKVM-P--DASI 559 (595)
Q Consensus 492 ~l~-~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p--~~~~ 559 (595)
.++ .++.... ...++...+.+..+. ....+. .+++.+...+. .|+..+..+.........-+ | ....
T Consensus 496 ~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~L 574 (608)
T PF10345_consen 496 CLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQL 574 (608)
T ss_pred HHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 443 3333211 223555544443321 111221 22333333444 67877766555554422111 2 3455
Q ss_pred HHH-----HHHHHHhcCccc
Q 040027 560 VSI-----VVDLLVKNEISL 574 (595)
Q Consensus 560 ~~~-----l~~~~~~~g~~~ 574 (595)
|.. +.+.+...|..+
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHH
Confidence 533 344466678777
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.94 E-value=1.7 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888899988888888765
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.70 E-value=4.7 Score=37.14 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040027 249 IHGLCHANDWNEAKRLFIEMMDQGVQP-SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGK 327 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 327 (595)
.+-|.++|.+++|+..|...+.. .| +++++..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 44566677777777777665553 23 66666666667777777666666555555431 1112233333333334455
Q ss_pred HHHHHHHHHHHHhc
Q 040027 328 INRAEELFGSMESM 341 (595)
Q Consensus 328 ~~~a~~~~~~~~~~ 341 (595)
..+|.+-++..+..
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55555555555544
No 332
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=12 Score=32.89 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=65.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh----HHhhCCCCCC-HHHHHHHHHHHHhcCChh
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT----RLNATGLFPN-LYTYNILINCFCKIGRVS 113 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 113 (595)
..+-...+++.|+..|-+++..+|. .+..|+.-+.++.+..+++. -.....+.|| +....-+...+.....++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3344557899999999999999997 77788888888888777776 2222333343 333444566667777788
Q ss_pred HHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 040027 114 LGFIAFGRILRS----CFTPNAATFNSLIKG 140 (595)
Q Consensus 114 ~A~~~~~~~~~~----~~~~~~~~~~~l~~~ 140 (595)
.|+..+.++... .+++....+..|..+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 888777777432 233444445544443
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.62 E-value=34 Score=33.49 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=81.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
.--...|+.-.|-+-+....... +.++.............|+++++.+.+...... +.....+...+++...
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 33345677666655555555443 334444445555667788888888887665543 2234566777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040027 254 HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRG 307 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 307 (595)
+.|++++|...-..|+...++ ++.......-.....|-++++.-.++++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888999998888888776555 44444444444556677888888888877653
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.54 E-value=22 Score=31.23 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHhhCCCC
Q 040027 210 YSTIIDGLCKEGFVDKAKALFLQMKDENIN 239 (595)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 239 (595)
+..+.......+++.+|+++|+++....+.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444555677888888888887765433
No 335
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=35 Score=33.51 Aligned_cols=433 Identities=12% Similarity=0.039 Sum_probs=223.5
Q ss_pred HHHHHhcC--CHhHHHHHHHHHHhcCCCCC--HhhHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHH
Q 040027 138 IKGLHAES--RIMEAAALFTKLKAFGCEPN--VITYNTLING-LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYST 212 (595)
Q Consensus 138 ~~~~~~~g--~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (595)
...+...| +...+++.++......++-- ..+...+... +....+++.|..-+++.-......+......-.++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 33344444 55566666666655432211 2222333333 3346778888887777654432222111223456777
Q ss_pred HHHHHHHcC-CHhHHHHHHHHHhhCC--CC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--
Q 040027 213 IIDGLCKEG-FVDKAKALFLQMKDEN--IN-PDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDE-- 286 (595)
Q Consensus 213 l~~~~~~~g-~~~~A~~~~~~~~~~~--~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-- 286 (595)
|...|.... .+..+..++++..+.. ++ .+-.....|+..+.-..++..|.+++.-=-.. -.+-...|..++..
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHH
Confidence 888888776 7888999998877642 11 11122234567777788999998874321111 11112223222221
Q ss_pred ----HHhcC---ChHHHHHHHHHHHHCCCCCCHHH------HHH--HHHHHHhcCCHHHHHHHHHHHHhc---CC-----
Q 040027 287 ----LCKNR---KMDEASRLLDLMVQRGVRPNACT------YNT--LMDGFCLMGKINRAEELFGSMESM---GC----- 343 (595)
Q Consensus 287 ----~~~~g---~~~~a~~~~~~~~~~~~~~~~~~------~~~--l~~~~~~~~~~~~a~~~~~~~~~~---~~----- 343 (595)
..... ++..+.....++.+. ..+|..- |.. -+.-|...|+...+...++++... +.
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Confidence 12222 344455555566554 3444322 211 123345678877777777766432 11
Q ss_pred -------CCCHHHHHHHHH----H---------HHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHH--------HHH
Q 040027 344 -------KHDDVSYNILIN----G---------YCKNKEVEEALSLYREMVSK----GIKP-TVVTYNT--------LFL 390 (595)
Q Consensus 344 -------~~~~~~~~~l~~----~---------~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~--------l~~ 390 (595)
.|++..+..+.. + -...|-+++|.+.-++++.. ...+ ....++. ++.
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 122222211111 0 11234455665555544432 1111 2222221 122
Q ss_pred HHHccCCHHHHHHHHHHHHHCC-CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH--HHHHH
Q 040027 391 GLFEIHQVEHALKLFDEMQRDG-VAADT--------RTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQA--YNCLI 459 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~ 459 (595)
.-.-.|++.+|++-..+|.+.- -.|.+ .+...+...++..+-++.|...|..+.+.--..|... -..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 2234799999999998887641 12331 1222333445567889999999988876533344333 34556
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCC-CHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 040027 460 DGLCKSGRLKFAWELFCSLPHGVLVP-NVV-----TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD-----VITFDML 528 (595)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l 528 (595)
..|.+.|+-+.-.++++.+-..+-.+ ... .+....-.....+++.+|..++.+-++..-.-| .-....|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 67888888888777777765321111 111 111111223378999999999998877421111 2223445
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC-CCCCCHHH--H--HHHHHHHHhcCc
Q 040027 529 IHGFIRINEPSKVNELLHKMKEK-KVMPDASI--V--SIVVDLLVKNEI 572 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~--~--~~l~~~~~~~g~ 572 (595)
...+...|+..++.+.+.-..+. .--||..+ | ..+-+.+...|.
T Consensus 492 s~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 56677788888888777665532 22355322 2 233344555555
No 336
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=48 Score=34.76 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040027 103 INCFCKIGRVSLGFIAFGRILRSCFTP---NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (595)
+.-+.+.+.+++|+.+.+..... .+ -...+..++..+...|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44467788899998887776554 33 3456788888899999999999988888864 667777777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH
Q 040027 180 GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK 219 (595)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (595)
++...... -+.... ...++..|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~------~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGP------PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCC------cccCchHHHHHHHHHHH
Confidence 66543322 222221 12356778888877776
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.90 E-value=31 Score=34.89 Aligned_cols=150 Identities=16% Similarity=0.085 Sum_probs=95.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 040027 108 KIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALN 187 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 187 (595)
-.|+++.|..++.++. -...+.++..+.++|..++|+++ .+|+... .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 3467777666544433 23345566666777777766653 2333322 233457788888887
Q ss_pred HHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 188 LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIE 267 (595)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 267 (595)
+..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+....+-..
T Consensus 659 la~e~~------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 659 LAVEAN------------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHhhc------------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 765543 456688888888899999988888877654 44566667777777666666556
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 040027 268 MMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLM 303 (595)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 303 (595)
..+.|.. |. ...++...|+++++.+++..-
T Consensus 718 ~~~~g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 6665533 22 233566788888888877654
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.72 E-value=31 Score=34.87 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=92.6
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040027 359 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVE 438 (595)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 438 (595)
..++++.|..++..+. ....+.+..-+.+.|-.++|+.+ .+|+..- .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 3455555555433322 22334455555666666666543 2232221 123356788888887
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 040027 439 LFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA 518 (595)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (595)
+..+. .+..-|..|.++....+++..|.+.|.+..+ |..|+..+...|+-+.-..+-....+.|
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g- 722 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG- 722 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-
Confidence 76654 3567788888888888888888888887765 4456666777777776666666666655
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 519 APDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
..| ....+|...|+++++.+++..-
T Consensus 723 ~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 222 2334567788888888776654
No 339
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.64 E-value=2.1 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLA 75 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (595)
|+.+.|..+|+++++..|. ++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHH
Confidence 5789999999999999987 8888887664
No 340
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=49 Score=36.46 Aligned_cols=182 Identities=13% Similarity=-0.001 Sum_probs=106.4
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCC-----HHHHHHHHHHHH
Q 040027 33 RDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPN-----LYTYNILINCFC 107 (595)
Q Consensus 33 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 107 (595)
-+.-.+-+|+..|..-+|++.|.++...-.. .-.....+....- ..--+..|-.|+ ...|..+++.+-
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge--~~aL~~lv~~~~p-----~~~sv~dG~t~s~e~t~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGE--GNALRKLVYFLLP-----KRFSVADGKTPSEELTALHYYLKVVRLLE 994 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhcccc--HHHHHHHHHHhcC-----CCCchhcCCCCCchHHHHHHHHHHHHHHH
Confidence 3333445589999999999999999776554 2222222222111 111122333332 466899999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 108 KIGRVSLGFIAFGRILRSCFTPN---AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
+.|-.+.+.++...+++.-.+-+ ..+++.+.+.....|.+-+|.+.+-.-... +........++..++..|+++.
T Consensus 995 ~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 995 EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHH
Confidence 99999999999999887632211 224566777777778777776554432211 1122345566777777776643
Q ss_pred ------------HHH-HHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHH
Q 040027 185 ------------ALN-LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKAL 229 (595)
Q Consensus 185 ------------A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (595)
... +++..-+.. .-.....|..|-..+...+++.+|-.+
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~------~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSS------PSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcC------ccccccHHHHHHHHHHhhcchhHHHHH
Confidence 222 233322222 112244566666667777777776544
No 341
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.22 E-value=21 Score=29.77 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
+.++.+.+.+.+++...+..++..+.+.|++....+ +...++-+|.......+..+. +....+.++=-.|..+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 344455566677777777777777777777554433 333444445444433332222 22233333333333221
Q ss_pred CCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 197 GEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMM 269 (595)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 269 (595)
...+..++..+...|++-+|..+.+..... +......++.+..+.+|...-..+|+-..
T Consensus 89 ----------~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 89 ----------GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----------hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 123455666777777777777777665332 11222345555555565555444444443
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.76 E-value=7.5 Score=33.51 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENA--AAPDVITFDMLIHG 531 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 531 (595)
.+..+..+.+.+...+++...+.-++. +| |...-..++..++-.|+|++|..-++-.-... ..+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677888899999888877763 45 44555677788889999999988887776642 12234455555543
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.57 E-value=7.4 Score=33.55 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 040027 425 DGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSL 478 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 478 (595)
+.+.+.+.+.+++...+.-.+.+ +.|......+++.++-.|++++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444445555555544444433 334444444455555555555555444443
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.15 E-value=59 Score=34.14 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=89.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHhhCCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 040027 213 IIDGLCKEGFVDKAKALFLQMKDENINP---DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK 289 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (595)
-+..+.+.+.+++|+++.+..... .| ....+...+..+...|++++|-...-.|... +...|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 356677888899998887766543 23 3456777888888899999999888888764 56667777776666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HHhcCCCCCHHHHH
Q 040027 290 NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGS------------------MESMGCKHDDVSYN 351 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~ 351 (595)
.++......++ .......++.+|..++..+.. .+...-.++... +.+. ..+.....
T Consensus 436 ~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e 509 (846)
T KOG2066|consen 436 LDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLE 509 (846)
T ss_pred ccccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHH
Confidence 66655443321 221122345556666555554 221111111111 1111 11223344
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 352 ILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
.|+..|...+++..|+.++-.+..
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 577778888888888887766543
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.14 E-value=47 Score=32.97 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 132 ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 132 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (595)
....+++..+..+.+.+-...+..++...| .+...+..++..|... ..+.-..+++++.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 333444444444444444444555554442 2444445555555444 33344444444444
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.99 E-value=3.2 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777788888888888887775
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.96 E-value=60 Score=34.12 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (595)
..+| .++-.|.+.|.+++|.++....... .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3344 5677889999999999998555443 333445666677777654
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.84 E-value=3.2 Score=23.33 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 488 VTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
.+|..+...|...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888889999999988888774
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.46 E-value=68 Score=34.33 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCCHh-------hHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHH
Q 040027 141 LHAESRIMEAAALFTKLKAFGCEPNVI-------TYNTLI-NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYST 212 (595)
Q Consensus 141 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (595)
.....++++|..++.++...-..|+.. .+..+- ......|++++|.++.+.....-.+.. ..+....+..
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~sv 502 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSV 502 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhhh
Confidence 345677777777777765542222111 122221 122346777777777766655321100 1223445555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHhh
Q 040027 213 IIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
+..+..-.|++++|..+.....+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHH
Confidence 66666667777777776665544
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.35 E-value=22 Score=28.71 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=31.8
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPNVVTY-NIMIQGLCNDGQMDKARDLFLDMEENA 517 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (595)
..++.+++..+++.+.- +.|+..-. ..-.+.+...|+|++|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777665 45543211 222344567777777777777777653
No 351
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.96 E-value=26 Score=32.22 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 040027 362 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 362 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 410 (595)
+.++++.++..=+..|+-||..+++.++..+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666555555554443
No 352
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.92 E-value=16 Score=26.83 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 502 QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
|.-++.+-++.+...++-|++.+....+++|.+.+++.-|.++++-.+.+ ...+..+|..+++-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 44467777888888888999999999999999999999999999988843 223556777766543
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.70 E-value=2 Score=22.63 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 040027 100 NILINCFCKIGRVSLGFIAFG 120 (595)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~ 120 (595)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 354
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.52 E-value=2.6 Score=23.39 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 525 FDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 525 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888888888888888888763
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.30 E-value=46 Score=31.57 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHh---cCChhHHHHH
Q 040027 434 IEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCN---DGQMDKARDL 509 (595)
Q Consensus 434 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~ 509 (595)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++... .| +...|...+..... .-.++....+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 44556667766664 556666777777777777777777777777763 23 45666666654443 2345566665
Q ss_pred HHHHHHc------CC------CCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC
Q 040027 510 FLDMEEN------AA------APD-----VITFDMLIHGFIRINEPSKVNELLHKMKEKKV-MPD 556 (595)
Q Consensus 510 ~~~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~ 556 (595)
|.+.+.. +. .++ ...+..+...+..+|..+.|..+++-+++.++ .|+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 5555431 11 011 12233344445678999999999999998876 343
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.11 E-value=2.1 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRS 125 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~ 125 (595)
++.++.+.|++++|...|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444445555555555554443
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.89 E-value=4 Score=24.98 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=12.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 040027 528 LIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555553
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.39 E-value=88 Score=33.56 Aligned_cols=223 Identities=15% Similarity=0.072 Sum_probs=120.5
Q ss_pred HHHcCCHhHHHHHHHHHhhCCCCCC----H---hHHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHH
Q 040027 217 LCKEGFVDKAKALFLQMKDENINPD----V---VTYNSLI-HGLCHANDWNEAKRLFIEMMDQ----GVQPSVVTFNVIM 284 (595)
Q Consensus 217 ~~~~g~~~~A~~~~~~~~~~~~~~~----~---~~~~~ll-~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 284 (595)
.....++++|..++.++...-..|+ . ..|+.|- ......|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456889999988888765421222 1 1334333 3345678999999888877654 1223455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHhcCC--HHHHHHHHHHHHhcC---CCC---CHHHHH
Q 040027 285 DELCKNRKMDEASRLLDLMVQRGVRPNACTYNT---L--MDGFCLMGK--INRAEELFGSMESMG---CKH---DDVSYN 351 (595)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~--~~~a~~~~~~~~~~~---~~~---~~~~~~ 351 (595)
.+..-.|++++|..+..+..+..-..+...+.. + ...+...|+ +.+....+..+.... .+. -...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988877766422223332222 2 233455663 233333333332211 011 122344
Q ss_pred HHHHHHHhCCCHHHHHHHH----HHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHH
Q 040027 352 ILINGYCKNKEVEEALSLY----REMVSKGIKPTVVTY--NTLFLGLFEIHQVEHALKLFDEMQRDGVAA----DTRTYT 421 (595)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 421 (595)
.+..++.+ .+.+..-. .-.......|-.... ..++......|+.++|...++++......+ +.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44445544 33333322 222222222222222 366777788999999999998887642222 222222
Q ss_pred HHH--HHHHhcCCHHHHHHHHHH
Q 040027 422 TFI--DGLCKNGYIIEAVELFRT 442 (595)
Q Consensus 422 ~l~--~~~~~~g~~~~A~~~~~~ 442 (595)
..+ ......|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222 223457888887777665
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.09 E-value=33 Score=31.27 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 169 YNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
+......|..+|.+.+|.++.+...+.+ +.+...+..++..++..||--.+.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-------pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-------PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455677788889999999888888876 56777888888888888887777766666543
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.03 E-value=84 Score=33.12 Aligned_cols=443 Identities=13% Similarity=0.090 Sum_probs=203.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCC--HHHHHHHHHHHH-hcCCHhHHHHHHHHHHhcCCCCCHh---
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILR-SCFTPN--AATFNSLIKGLH-AESRIMEAAALFTKLKAFGCEPNVI--- 167 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~--- 167 (595)
+...|..+|.. |+..++.+.+ ..++|. ..++..+...+. ...+++.|...+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 44555555543 3445555553 222332 224455666665 4678888888887765443222211
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHH-HHHHHHcCCHhHHHHHHHHHhhCC---CCCC
Q 040027 168 --TYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTI-IDGLCKEGFVDKAKALFLQMKDEN---INPD 241 (595)
Q Consensus 168 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 241 (595)
.-..++..+.+.+... |+..+++..+.-...+ ..+-...+..+ +..+...+++..|.+.++.+...- ..|.
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 1234456666666555 8877777665431100 00112222223 223333478888888887765531 2233
Q ss_pred HhHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC--C-------CCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHH---
Q 040027 242 VVTYNSLIHGLC--HANDWNEAKRLFIEMMDQG--V-------QPSVVTFNVIMDE--LCKNRKMDEASRLLDLMVQ--- 305 (595)
Q Consensus 242 ~~~~~~ll~~~~--~~~~~~~A~~~~~~~~~~~--~-------~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~--- 305 (595)
..++..++.+.. ..+..+++.+..+.+.... + .|...+|..++.. +...|++..+...++++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~ 256 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLD 256 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334444444333 3455666666666553321 1 2234455555553 3456666666655554432
Q ss_pred ----CC-CC----------------------CCH---------HHHHHHHH--HHHhcCCHHHHHHHHHH-------HH-
Q 040027 306 ----RG-VR----------------------PNA---------CTYNTLMD--GFCLMGKINRAEELFGS-------ME- 339 (595)
Q Consensus 306 ----~~-~~----------------------~~~---------~~~~~l~~--~~~~~~~~~~a~~~~~~-------~~- 339 (595)
.. .+ +.. ..+..++. .....+..+++.+++++ ..
T Consensus 257 ~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~ 336 (608)
T PF10345_consen 257 EIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI 336 (608)
T ss_pred HhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc
Confidence 10 00 000 01111111 22233444455555444 33
Q ss_pred hcCCCCC--H------HHHHHHHH---------HHHhCCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHc
Q 040027 340 SMGCKHD--D------VSYNILIN---------GYCKNKEVEEALSLYREMVSKGI-KPT-------VVTYNTLFLGLFE 394 (595)
Q Consensus 340 ~~~~~~~--~------~~~~~l~~---------~~~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~ 394 (595)
.....++ . ..|...+. ...-.+++..|...+..+..... .|+ +..+....-.+-.
T Consensus 337 ~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~ 416 (608)
T PF10345_consen 337 KSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS 416 (608)
T ss_pred cCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH
Confidence 1110111 0 11222222 22347889999999988876421 111 2222222333446
Q ss_pred cCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHhcC--CHHH--HHHHHHHHHHc-CCCc--CHHHHHH
Q 040027 395 IHQVEHALKLFD--------EMQRDGVAADTRTYTTF--IDGLCKNG--YIIE--AVELFRTLRIL-KCEL--DIQAYNC 457 (595)
Q Consensus 395 ~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~~~~~-~~~~--~~~~~~~ 457 (595)
.|+.+.|...|. .....+...+..++..+ +-.+...+ ...+ +..+++.+... .-.+ +..++..
T Consensus 417 ~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~ 496 (608)
T PF10345_consen 417 TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYC 496 (608)
T ss_pred cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHH
Confidence 799999999997 33344333333333221 11222222 2222 66666666532 1122 2233333
Q ss_pred HH-HHHHhcCC--hHHHHHHHHhcccCC---CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC--CHHHH
Q 040027 458 LI-DGLCKSGR--LKFAWELFCSLPHGV---LVPN---VVTYNIMIQGLCNDGQMDKARDLFLDMEENAA-AP--DVITF 525 (595)
Q Consensus 458 l~-~~~~~~g~--~~~A~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~ 525 (595)
++ .++..... ..++...+.+..+.- ...+ ..+++.+...+. .|+..+..+.......... .| ....|
T Consensus 497 ~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW 575 (608)
T PF10345_consen 497 LVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLW 575 (608)
T ss_pred HHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 33 22221111 123333333322210 1111 122333333333 7888876666555443211 12 23344
Q ss_pred H-----HHHHHHHHcCChhHHHHHHHHHHH
Q 040027 526 D-----MLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 526 ~-----~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
. .+...|-..|+.++|.....+...
T Consensus 576 ~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 576 HLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2 334457778999999988887653
No 361
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.15 E-value=16 Score=33.56 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=76.6
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 040027 86 RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSC---FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGC 162 (595)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 162 (595)
.-...|.+.++.+-..++..-....+.++++..+-++.... ..++...+ .+++.+. .-+.++++.++..=+..|+
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhcc
Confidence 34455666666666666666666788888888887776541 11222221 2223222 3466788988888889999
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 163 EPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
-||..++..++..+.+.+++.+|.++.-.+...+
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777654
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.94 E-value=20 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 470 FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+..+-++.+....+.|++.+....+++|.+.+|+..|+++|+-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34555555566666777777777777777777777777777766654
No 363
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.77 E-value=3.6 Score=39.92 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=52.8
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNVV-TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
...+.++.|..++.++++ +.||-. .|..-..++.+.+++..|+.=+.++++.. +-....|..-+.++.+.+++.+|
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHH
Confidence 344555666666666655 445432 22223355555666666665555555543 11233444444555555555666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040027 542 NELLHKMKEKKVMPDASIVSIVVDLLVKNEI 572 (595)
Q Consensus 542 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 572 (595)
+..|+.... +.|+..-...+++-+-+...
T Consensus 92 ~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 92 LLDLEKVKK--LAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHhhh--cCcCcHHHHHHHHHHHHHHH
Confidence 655555554 34555555555444444333
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.59 E-value=49 Score=29.10 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 489 TYNIMIQGLCNDGQMD-------KARDLFLDMEENAAAP-----DVITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
.+..+++.|...|+.+ .|.+.|.+..+..-.| +......++....+.|++++|.++|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4445555666666533 4455555555432111 13344556677778888888888888888653
No 365
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.57 E-value=14 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=11.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 040027 528 LIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+.-++.+.|++++|.++.+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444555555555555555554
No 366
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.16 E-value=63 Score=30.08 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=38.1
Q ss_pred CHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----c
Q 040027 222 FVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN-------DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK----N 290 (595)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 290 (595)
+..+|..+|++..+.|..+...+...+...|.... +...|..+|.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 55666666666666553321112233333333321 2235556665555543 23333333333322 2
Q ss_pred CChHHHHHHHHHHHHCC
Q 040027 291 RKMDEASRLLDLMVQRG 307 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~~ 307 (595)
.+..+|..+|....+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 35566666666666554
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.86 E-value=6.2 Score=24.15 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 213 IIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 213 l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 566677777777777777776654
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.39 E-value=8.6 Score=38.36 Aligned_cols=101 Identities=12% Similarity=-0.108 Sum_probs=66.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040027 427 LCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKA 506 (595)
Q Consensus 427 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 506 (595)
+...|+...|...+..+..............|.....+.|-.-.|-.++.+.+... ...+.++..+..+|....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34467888888888777654322333445566677777777777777777766532 22455677778888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 040027 507 RDLFLDMEENAAAPDVITFDMLI 529 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~ 529 (595)
++.|+++.+.. +.+..+-+.|.
T Consensus 696 ~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHHHHhcC-CCChhhHHHHH
Confidence 88888888764 34444444443
No 369
>PRK10941 hypothetical protein; Provisional
Probab=75.96 E-value=48 Score=30.39 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 040027 491 NIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK-KVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 569 (595)
+.+-.+|.+.++++.|+++.+.++... +.++.-+.--+-.|.+.|.+..|..-++..++. .-.|+.......+..+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 445566777777777777777777753 445555655666677777777777777777653 234555666665555544
Q ss_pred c
Q 040027 570 N 570 (595)
Q Consensus 570 ~ 570 (595)
.
T Consensus 264 ~ 264 (269)
T PRK10941 264 K 264 (269)
T ss_pred c
Confidence 3
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.72 E-value=45 Score=30.25 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----
Q 040027 249 IHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC----- 323 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 323 (595)
|.+++..|+|.+++.+.-+.-...-+..+.....-|-.|.+.+.+..+.++-....+..-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666666555444331111223333344455666666666666555554321222223444444333
Q ss_pred hcCCHHHHHHHH
Q 040027 324 LMGKINRAEELF 335 (595)
Q Consensus 324 ~~~~~~~a~~~~ 335 (595)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235555555444
No 371
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.71 E-value=63 Score=29.38 Aligned_cols=89 Identities=11% Similarity=-0.026 Sum_probs=65.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 040027 282 VIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCK-- 359 (595)
Q Consensus 282 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 359 (595)
.-|.++...+++.+++...-+--+..-+..+.+....|-.|.+.+++..+.++-.......-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346788999999998877655554433445667777888899999999999999888765323333457777666654
Q ss_pred ---CCCHHHHHHHH
Q 040027 360 ---NKEVEEALSLY 370 (595)
Q Consensus 360 ---~~~~~~A~~~~ 370 (595)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 79999999987
No 372
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.66 E-value=1.2e+02 Score=32.39 Aligned_cols=371 Identities=12% Similarity=0.021 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH---hcCChhHHHHHHHHHHhcCCCCCccccCc
Q 040027 130 NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC---RTGHTMIALNLFEEMANGNGEIGVVCKPN 206 (595)
Q Consensus 130 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 206 (595)
+...+..|+..+.+.|++++....-..|.+. .+..+..|...+.-.. ..+....+..+|++.+... .+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--------~~ 182 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--------NS 182 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--------cc
Confidence 4555677777788888887777666666665 3456666766655443 3466667777777776543 22
Q ss_pred HHHHHHHHHHH-------HHcCCHhHHHHHHHHHhhC-CCCCC--HhHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCC
Q 040027 207 TVTYSTIIDGL-------CKEGFVDKAKALFLQMKDE-NINPD--VVTYNSL---IHGLCHANDWNEAKRLFIEMMDQGV 273 (595)
Q Consensus 207 ~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~-~~~~~--~~~~~~l---l~~~~~~~~~~~A~~~~~~~~~~~~ 273 (595)
+..|.-.+..+ ...++++....+|++.... |...+ ...|... -..|..+-..++...++..-+..+
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~- 261 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP- 261 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-
Confidence 33333333322 2346677777777776553 22111 1222222 233344444455666665555543
Q ss_pred CCCHhhHHHHHHHHH-------hcCChHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 274 QPSVVTFNVIMDELC-------KNRKMDEASRL-------LDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSME 339 (595)
Q Consensus 274 ~~~~~~~~~l~~~~~-------~~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 339 (595)
.|..+-..-+.-.. ...+++.+..- +++..+. ..+-...|..++......|+.-....+++++.
T Consensus 262 -~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 262 -LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred -chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 22222111111111 11222222222 2222222 12223345556666666777666666666655
Q ss_pred hcCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHHC------
Q 040027 340 SMGCKHDDVSYNILINGY-CKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHA-LKLFDEMQRD------ 411 (595)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~------ 411 (595)
... ..+...|....... ...+-.+.+..++...... ++-...+|...+.++.+.+..... ...|......
T Consensus 340 ~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~ 417 (881)
T KOG0128|consen 340 AEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHN 417 (881)
T ss_pred Hhc-cccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHH
Confidence 331 22222221111000 0011111222222222221 111222232222333332221111 1111111111
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCChHHHHHHHHhcccC
Q 040027 412 ---------GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC-KSGRLKFAWELFCSLPHG 481 (595)
Q Consensus 412 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 481 (595)
+...+...|..+- ..+..|...|.........+............. ..++.+.++.+|+.+...
T Consensus 418 ~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty 491 (881)
T KOG0128|consen 418 DYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY 491 (881)
T ss_pred HHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC
Confidence 1111111121111 124445555555444322333444444444433 457899999999998875
Q ss_pred CCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 040027 482 VLVPNVV-TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD 521 (595)
Q Consensus 482 ~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 521 (595)
+-. +.. .|...+..-...|+...+..+++.+...-..|+
T Consensus 492 ~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 492 GGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred Ccc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 322 233 566666666677888888887777776543443
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.49 E-value=23 Score=35.55 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=80.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIA 185 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 185 (595)
....|+...|...+..+....+...-...-.+...+.+.|....|-.++.+.+... ...+-++..+.+++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34579999999999998876443344455667777888888889999988887765 34667788889999999999999
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLC 218 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (595)
++.|+.+.+.. +.++..-+.|..+-+
T Consensus 696 ~~~~~~a~~~~-------~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLT-------TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcC-------CCChhhHHHHHHHHH
Confidence 99999999875 455666666655544
No 374
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.01 E-value=4 Score=37.70 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=77.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCChhHH
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNV-VTYNIMIQGLCNDGQMDKA 506 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 506 (595)
...|.++.|++.+...+..+ ++....|..-..++.+.+++..|++-++.... +.||. .-|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 34677888888888888776 66677777777788888888888888888777 55553 2333333445567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 507 RDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
...+....+.++.+.... .+-.+.-+.+..++-...+++..
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHH
Confidence 888888888765444333 33334444555555554454444
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.56 E-value=23 Score=27.58 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 506 ARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDL 566 (595)
Q Consensus 506 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 566 (595)
..+-++.....++-|++......+++|.+.+++..|.++++-.+.+ ..+...+|..+++-
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 3445555555566677777777777777777777777777766643 22333345555443
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.70 E-value=72 Score=29.12 Aligned_cols=107 Identities=12% Similarity=-0.047 Sum_probs=47.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH----HHHHhcCCCCCHhhHHHHHHHHHhcCChh
Q 040027 108 KIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALF----TKLKAFGCEPNVITYNTLINGLCRTGHTM 183 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (595)
+++++++|+.++-.-.. .+.+.|+...|.++- +-..+.+.+.+......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 45666666666654332 234455554444332 23333455555555555555555443222
Q ss_pred -HHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHH
Q 040027 184 -IALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALF 230 (595)
Q Consensus 184 -~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (595)
+-.++.+.+.+.. +.+....-++.....+...|.+.|++.+|+.-|
T Consensus 67 p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 67 PERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2333334443322 111111234666777777777777777766544
No 377
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.89 E-value=1.4e+02 Score=31.64 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 040027 293 MDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYRE 372 (595)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (595)
..++...++...... .+.......++...+.++++.+...+..|.... ........-+.+++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555554433221 233334444445556666666666666654321 12333344455555556666666666666
Q ss_pred H
Q 040027 373 M 373 (595)
Q Consensus 373 ~ 373 (595)
+
T Consensus 372 ~ 372 (644)
T PRK11619 372 L 372 (644)
T ss_pred H
Confidence 5
No 378
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.50 E-value=84 Score=28.88 Aligned_cols=62 Identities=6% Similarity=0.104 Sum_probs=34.0
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040027 274 QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR-GVRPNACTYNTLMDGFCLMGKINRAEELF 335 (595)
Q Consensus 274 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (595)
.++..+...++..+++.+++..-.++++..... +...|...|..+++.....|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344555555566666666666666666555444 34445555666666666666554444433
No 379
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.67 E-value=87 Score=28.76 Aligned_cols=62 Identities=5% Similarity=0.048 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 040027 344 KHDDVSYNILINGYCKNKEVEEALSLYREMVSK-GIKPTVVTYNTLFLGLFEIHQVEHALKLF 405 (595)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 405 (595)
.++..+...++..++..+++..-.+++...... +...|...|..++......|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344445555555556666666665555554443 33445555566666555556555444443
No 380
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.26 E-value=65 Score=28.87 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040027 318 LMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGY 357 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (595)
+++.+-+.++++++...++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444445555555555555555544333444344333333
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.20 E-value=8.9 Score=20.34 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILR 124 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (595)
|..+...+...|+++.|...|++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555555555555555555544
No 382
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.93 E-value=4.2 Score=37.61 Aligned_cols=107 Identities=13% Similarity=-0.045 Sum_probs=76.7
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV-ITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 541 (595)
...|.++.|++.|...+..+ +|....|..-..++.+.+++..|++=+...++. .||. .-|..-..+-...|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35788999999999999842 334566777778899999999999999988885 4543 3454445555678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 542 NELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 542 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.+.+....+.++.+.... .+-.+.-+.++.+
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~ 232 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIE 232 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhh
Confidence 999999999876654433 3333334444433
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.64 E-value=86 Score=28.27 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=114.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----CCCCCHhHHHHHHHHHH
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----NINPDVVTYNSLIHGLC 253 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~ll~~~~ 253 (595)
..++++|+.-|++..+..++-| ...-.+...++..+.+.+++++..+.|.++..- .-..+..+.+.++..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKg---eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKG---EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccc---hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 4577888888888887654321 223445667788899999999998888876531 01124566777777666
Q ss_pred hcCCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----C-------CHHHHHH
Q 040027 254 HANDWNEAKRLFIEMMDQ-----GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVR----P-------NACTYNT 317 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~-------~~~~~~~ 317 (595)
...+.+--...|+.-++. +-..-..+-..+...|...+.+....+++.++.+.--. . -...|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 666655555555443321 11112223456778888888888888888887653111 1 1245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHH----HHHHHhCCCHHHHHHHH
Q 040027 318 LMDGFCLMGKINRAEELFGSMESMG-CKHDDVSYNIL----INGYCKNKEVEEALSLY 370 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l----~~~~~~~~~~~~A~~~~ 370 (595)
-++.|....+-.+...+|++..... ..|.+.....+ ..++.+.|++++|..-|
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 6778888887777788888765331 12333322221 12345667787776443
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.26 E-value=1.6e+02 Score=31.36 Aligned_cols=377 Identities=12% Similarity=0.026 Sum_probs=176.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHhHHHHHHHHHHhcCCCCCHhhHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGL---HAESRIMEAAALFTKLKAFGCEPNVITYNT 171 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 171 (595)
+...+..|+..+.+.|++++....-..|... .+..+..|...+... ...+...++..+|++.... .-++..|..
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHHH
Confidence 5566677888888888887776666666655 255666776555432 2346777777888777654 334455554
Q ss_pred HHHHHH-------hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHH---HHHHHcCCHhHHHHHHHHHhhCCCCCC
Q 040027 172 LINGLC-------RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTII---DGLCKEGFVDKAKALFLQMKDENINPD 241 (595)
Q Consensus 172 l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~ 241 (595)
.+..+. ..++++....+|++++..-+.+ ...-...|.... ..|...-..++...+|..-...+. |
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~---~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~--D 263 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH---ITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL--D 263 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhh---hcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc--h
Confidence 444333 3456777778888777643211 111223333332 334444445667777766555432 2
Q ss_pred HhHHHHHHHHHH-------hcCCHHHHHHH-------HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040027 242 VVTYNSLIHGLC-------HANDWNEAKRL-------FIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRG 307 (595)
Q Consensus 242 ~~~~~~ll~~~~-------~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 307 (595)
..+-..-+.--. .....+.+..- +...... ..+-...|..++..+.+.|+......+++++....
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~ 342 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM 342 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc
Confidence 222111111111 11223333322 2222221 22234467778888888999888888888877642
Q ss_pred CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCHHH
Q 040027 308 VRPNACTYNTLMDGFC--LMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE-ALSLYREMVSKGIKPTVVT 384 (595)
Q Consensus 308 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~ 384 (595)
..+...|.... .|. ..+-.+.+..++.+.... ++-...+|.....++.+.+.... -...+......++. -...
T Consensus 343 -~~~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~-l~~~ 418 (881)
T KOG0128|consen 343 -VLDRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE-LHND 418 (881)
T ss_pred -cccHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH-HHHH
Confidence 22222221110 110 011112222222222222 12222333333333333332221 11222222221111 0001
Q ss_pred HHHHHHHHHc---c-------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 040027 385 YNTLFLGLFE---I-------HQVEHALKLFDEMQRDGVAADTRTYTTFIDG-LCKNGYIIEAVELFRTLRILKCELDIQ 453 (595)
Q Consensus 385 ~~~l~~~~~~---~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~ 453 (595)
+......+.. . ..+..|...|.........+...+....... +...++.+.+..+++.+...+ .-+..
T Consensus 419 ~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~-~~~ia 497 (881)
T KOG0128|consen 419 YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG-GGSIA 497 (881)
T ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC-cchHH
Confidence 1111111111 1 1133344444333322112222222222222 234678899999998887655 22333
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHhcccCCCCC
Q 040027 454 -AYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP 485 (595)
Q Consensus 454 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 485 (595)
.|...+..-...|+...++.+++.+...-..|
T Consensus 498 g~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 498 GKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 55555555566688888887777766543333
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.17 E-value=55 Score=25.85 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
.+.++|..|...|+.-. ...|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88889999988776555 556777888888899999999988764
No 386
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.85 E-value=1e+02 Score=28.72 Aligned_cols=150 Identities=11% Similarity=0.000 Sum_probs=82.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
..+++..+...+......+ +......+...|.. ..+..+|.++|......| .......|...|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~ 120 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYA 120 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHh
Confidence 3456666666666666533 22333444444443 345777888888776665 3334444555555
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 254 H----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNR-------KMDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 254 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
. ..+..+|..+|.+..+.|..+...+...+...+..-. +...|...|.++...+ +......+...|
T Consensus 121 ~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y 197 (292)
T COG0790 121 NGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMY 197 (292)
T ss_pred cCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 4 3478888888888888765543222333333333321 2235666666666654 333444444444
Q ss_pred Hh----cCCHHHHHHHHHHHHhcC
Q 040027 323 CL----MGKINRAEELFGSMESMG 342 (595)
Q Consensus 323 ~~----~~~~~~a~~~~~~~~~~~ 342 (595)
.. ..+..+|...|....+.|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCC
Confidence 33 235666777777666654
No 387
>PRK10941 hypothetical protein; Provisional
Probab=68.16 E-value=79 Score=28.97 Aligned_cols=57 Identities=9% Similarity=-0.136 Sum_probs=32.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+-.+|.+.++++.|..+.+.+.... |.++.-+..-+-.|.+.|.+..|..-++..++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344555666666666666665554 44555555555555666666666655555544
No 388
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.99 E-value=2.4 Score=34.40 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040027 102 LINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 181 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (595)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4556666777777888888887665555677778888888887776666666652111 222344555555555
Q ss_pred hhHHHHHHHHH
Q 040027 182 TMIALNLFEEM 192 (595)
Q Consensus 182 ~~~A~~~~~~~ 192 (595)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.68 E-value=8.8 Score=26.95 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=22.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHH
Q 040027 499 NDGQMDKARDLFLDMEENAAAPD--VITFDMLIHGFIRINEPSKVNEL 544 (595)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 544 (595)
...+.++|+..|...++.--.+. ..++-.++.+|+..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655421111 12333445555556665555544
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.96 E-value=24 Score=24.86 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=19.4
Q ss_pred hcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHH
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCNDGQMDKARDL 509 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 509 (595)
...+.++|+..|...++....|. -.++..++.+|+.-|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444321111 12333444444444544444443
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.82 E-value=45 Score=24.59 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=32.0
Q ss_pred HhcCChhHHHHHHHHHHHcC---CCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 498 CNDGQMDKARDLFLDMEENA---AAPD-----VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+.|++.+|.+.+.+..+.. ..+. ......+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46677777766665554421 1111 12233455566777888888888888874
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.07 E-value=21 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.394 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 521 DVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
|..-...++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334455666677777777777666665
No 393
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.12 E-value=2.1e+02 Score=29.95 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 040027 402 LKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLP 479 (595)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 479 (595)
....+.++.+-.-.+......++..|.+.|-.+.|..+.+.+-..- ....-|...+..+.++|+......+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444443223344555666677777777777777776554321 122334445555566666655555544444
No 394
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.97 E-value=84 Score=25.08 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 485 PNVVTYNIMIQGLCNDG---QMDKARDLFLDMEENAAAPD--VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 485 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
++..+-..+.+++.+.. +..+.+.++++..+.. +|+ -.....|.-++.+.++|++++++++.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555433 2334455555555421 221 22333444455566666666666666665
No 395
>PRK12798 chemotaxis protein; Reviewed
Probab=60.52 E-value=1.7e+02 Score=28.54 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhCCCHH
Q 040027 290 NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC-LMGKINRAEELFGSMESMGCKHDD----VSYNILINGYCKNKEVE 364 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 364 (595)
.|+.+++.+.+..+.....++....+..|+.+-. ...+...|+.+|+...-. -|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4555555555555554444444444444444332 233455555555554322 1221 12233333445555555
Q ss_pred HHHHHHHHHHH
Q 040027 365 EALSLYREMVS 375 (595)
Q Consensus 365 ~A~~~~~~~~~ 375 (595)
+...+-.+...
T Consensus 203 rf~~la~~Y~r 213 (421)
T PRK12798 203 KFEALARNYLR 213 (421)
T ss_pred HHHHHHHHHHH
Confidence 55544444333
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.57 E-value=65 Score=23.33 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHH
Q 040027 150 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKA 226 (595)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (595)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .+ +..|..++.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhh
Confidence 44566666666532 32333333222234577777777777776 43 45566677777666654444
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.29 E-value=21 Score=34.92 Aligned_cols=104 Identities=14% Similarity=-0.014 Sum_probs=61.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRDGVAAD-TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (595)
+..+...+.++.|..++.++++. .|+ ...+..-..++.+.+++..|+.=+..+++.. +.....|..=+.++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34445566777777777777765 343 3333333356667777777777776666654 3334444444555666667
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 040027 468 LKFAWELFCSLPHGVLVPNVVTYNIMIQGL 497 (595)
Q Consensus 468 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 497 (595)
+.+|...|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 7777777776665 566655555444433
No 398
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.57 E-value=1.3e+02 Score=26.64 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 040027 252 LCHANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~ 271 (595)
-...+++.+|+++|+++...
T Consensus 164 aa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.22 E-value=52 Score=29.80 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHhh----CC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 208 VTYSTIIDGLCKEGFVDKAKALFLQMKD----EN-INPDVVTYNSLIHGLCHANDWNEAKRLFIEM 268 (595)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 268 (595)
.....+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+--++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3334455555555666666555555432 12 1223344445555566666666655554443
No 400
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.15 E-value=16 Score=20.50 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHhhHH
Q 040027 46 TPNEAFCIFDYMLRMHPSPPPVSSFN 71 (595)
Q Consensus 46 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 71 (595)
.++.|+.+|++.+..+| ++.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp---~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP---EVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCC---CchHHH
Confidence 57899999999999876 455554
No 401
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=1.1e+02 Score=28.65 Aligned_cols=91 Identities=11% Similarity=-0.035 Sum_probs=57.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 040027 458 LIDGLCKSGRLKFAWELFCSLPHGV-LVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIR 534 (595)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 534 (595)
=++-|.+..++..|...|.+-+... -.|+ ...|+.-..+-...|++..|+.=..+.+... +-....|..-..++..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHH
Confidence 3455666777777777777655421 2233 4566666666666777777777777776643 3334566666667777
Q ss_pred cCChhHHHHHHHHHH
Q 040027 535 INEPSKVNELLHKMK 549 (595)
Q Consensus 535 ~g~~~~A~~~~~~~~ 549 (595)
..++.+|..+.++..
T Consensus 166 Le~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777777777766664
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.48 E-value=57 Score=28.11 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 519 APDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.|++..|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57777777777777777777777777777775
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.25 E-value=76 Score=23.38 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
.+.......|++++|+..+++.++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556667788888877777765
No 404
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.20 E-value=50 Score=21.27 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 040027 491 NIMIQGLCNDGQMDKARDLFLDMEENAAAPDVI 523 (595)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 523 (595)
..+..++.+.|++++|.+..+.+++. .|+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 34556677777777777777777774 45443
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.98 E-value=2e+02 Score=28.14 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=38.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--HccCCHHHHHHHHHHHHHC
Q 040027 354 INGYCKNKEVEEALSLYREMVSKGIKPTVV--TYNTLFLGL--FEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 411 (595)
+.-+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455788899999999988876 444443 344444444 3467788888888877654
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.59 E-value=31 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=18.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (595)
|-.-...++.+|.+.|++++|.+.++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333345567777777777777777766654
No 407
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.44 E-value=3.4e+02 Score=30.60 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-----------------------CCCCC-----HHHHHHHHHHHHhcCCHhHH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRS-----------------------CFTPN-----AATFNSLIKGLHAESRIMEA 150 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~g~~~~A 150 (595)
...+..+|...|...+|+..|.++..- |-.|+ ..-|..+++.+-+.+-.+.+
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~v 1002 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEV 1002 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHH
Confidence 334555677888999999988877542 11111 12355666777777778888
Q ss_pred HHHHHHHHhcCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh--
Q 040027 151 AALFTKLKAFGCEPN----VITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD-- 224 (595)
Q Consensus 151 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-- 224 (595)
.++-..+++. ++++ ..+++.+.......|.+.+|.+.+-..... .....+...++..+...|.++
T Consensus 1003 cQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--------errrdcLRqlvivLfecg~l~~L 1073 (1480)
T KOG4521|consen 1003 CQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--------ERRRDCLRQLVIVLFECGELEAL 1073 (1480)
T ss_pred HHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHhccchHHH
Confidence 8777766654 2222 234566677777778877776654333221 122345566666677666543
Q ss_pred ----------HHHH-HHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 225 ----------KAKA-LFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFI 266 (595)
Q Consensus 225 ----------~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 266 (595)
+... +++...+.........|..|-..+...+++.+|-.+.-
T Consensus 1074 ~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1074 ATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred hhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 3334 33333332222334456666677778888888766543
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.86 E-value=2e+02 Score=27.89 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCF--TPNAATFNSLIKGLHAESRIMEAAALFTKLK 158 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 158 (595)
..+.-+...|..+|+++.|++.|.++..-.. ...+..|..++..-.-.|++........+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3455566666667777777777766443311 1123344455555555566555554444443
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.79 E-value=1.8e+02 Score=27.23 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 246 NSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVV---TFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 246 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
..|..+..+.|+..+|.+.++++.+. + |-.. ....++.++....-+.+...++-+-.+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke-~-pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE-F-PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555556677777777777776654 1 1111 223456666665555555555544433
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.66 E-value=2e+02 Score=27.87 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=24.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHhcccC-----CCCCCHHHHHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG-----VLVPNVVTYNIMI 494 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~ 494 (595)
..+..+..+...| .+++..++++++++... -+.|.+.+...+|
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 3445555555554 46677777777776542 2345555555555
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.27 E-value=1.8e+02 Score=28.47 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=40.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHhhCCCCCCHh--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 040027 214 IDGLCKEGFVDKAKALFLQMKDENINPDVV--TYNSLIHGLCH--ANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 214 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~~~~~~A~~~~~~~~~~ 271 (595)
+..+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999886 554444 45555555554 56788999999887764
No 412
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.12 E-value=1.7e+02 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 040027 248 LIHGLCHANDWNEAKRLFIEMMDQGVQPSV 277 (595)
Q Consensus 248 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 277 (595)
+.+...+.+++++|+..|..++..|+..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~de 38 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDE 38 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhh
Confidence 445556666777777777777766655444
No 413
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.86 E-value=53 Score=20.55 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 533 IRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 533 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
.+.|-.+++..++++|.+.|+.-++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666777777766676666666665543
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.33 E-value=1.8e+02 Score=27.39 Aligned_cols=58 Identities=17% Similarity=-0.006 Sum_probs=33.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCcCHHHH--HHHHHHHHhcCChHHHHHHHHhccc
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRIL---KCELDIQAY--NCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
++....+.++.++|.+.++++... .-.|+...| ...+.++...|+.+++.+.+++..+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334445556777777777776542 113444433 3444556666777777777766655
No 415
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.62 E-value=2.1e+02 Score=31.95 Aligned_cols=216 Identities=11% Similarity=0.108 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhcCCCCCHhhH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRS-C--FTPNAATFNSLIKGLHA-ESRIMEAAALFTKLKAFGCEPNVITY 169 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 169 (595)
|.+-+. ..++.+...++|.+|..+.++-.-. + +.-++..+..=+..+.+ -++.+----.+..+...++. ...|
T Consensus 693 PR~LVL-~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY 769 (928)
T PF04762_consen 693 PRALVL-AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMY 769 (928)
T ss_pred cHhHHH-HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--cccc
Confidence 443333 4667788899999999888875422 1 13345555444444433 34444333333444332211 1111
Q ss_pred HHHH------------HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC--CHhHHHHHHHHHhh
Q 040027 170 NTLI------------NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG--FVDKAKALFLQMKD 235 (595)
Q Consensus 170 ~~l~------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 235 (595)
.... ......++.......+....... .....-...++.+|++.+ ++++|+.+..++++
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-------~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 770 KDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-------KDKDKYLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred ccccccccccccccccCCCccccHHHHHHHHHHHHhccc-------ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 1111 00111223333333333333211 123445566777787777 77788877777776
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040027 236 ENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTY 315 (595)
Q Consensus 236 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 315 (595)
.+ ...-...+...+- +-.+-++|+..+.. -|.. ..++-+-..+.|+.+=+-+++++.+. +++..-|
T Consensus 843 ~~----~~~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry 908 (928)
T PF04762_consen 843 ED----PESAEEALKYLCF---LVDVNKLYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY 908 (928)
T ss_pred cC----hHHHHHHHhHhee---eccHHHHHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheee
Confidence 41 1111111111111 11222223222211 0111 12333444556777777777766653 2222111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 040027 316 NTLMDGFCLMGKINRAEELFGS 337 (595)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~ 337 (595)
.|. ...+++++|++.+.+
T Consensus 909 --~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 909 --KID--DHLKRYEKALRHLSA 926 (928)
T ss_pred --eHh--hhhCCHHHHHHHHHh
Confidence 122 235788888877654
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.88 E-value=2.4e+02 Score=27.31 Aligned_cols=124 Identities=9% Similarity=-0.002 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC---HANDWNEAKRLFIEMMDQGVQPSVVTF 280 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~ 280 (595)
|-...++..+...+...|+.+.|.+++++..-.- ..++......+. ..|.. -+.....-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~---------rL~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC---------RLDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc---------ccCCccccchHHH
Confidence 4556777777788888888888888777764310 000111110000 00000 0000011133333
Q ss_pred HH---HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 040027 281 NV---IMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC-LMGKINRAEELFGSMES 340 (595)
Q Consensus 281 ~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 340 (595)
.. .+..+.+.|-+..|+++.+-+...+..-|+.....+|..|+ +.++++--+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 33 34456677777777777777777655445555555555543 55666666666665443
No 417
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.81 E-value=1.2e+02 Score=24.59 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 511 LDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.+.+.|++++.. -..++..+...++.-.|.++++++.+.+.+-+..|....++.|...|-..
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3444455544432 22345555666666677777777776654455666666666677766655
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.13 E-value=3e+02 Score=28.19 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=97.2
Q ss_pred cCCHhHHHHHHHHHhhCC-----------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCC------
Q 040027 220 EGFVDKAKALFLQMKDEN-----------INPDVVTYNSLIHGLCHANDWNEAKRLFIEM-------MDQGVQP------ 275 (595)
Q Consensus 220 ~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~-------~~~~~~~------ 275 (595)
...+++|...|.-.+..- .+..+.+...+..++..+|+.+-+..+.... ..-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455778887777665531 1122344555667888899877776665443 3222221
Q ss_pred -------CHhhHHH---HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcC--
Q 040027 276 -------SVVTFNV---IMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC-LMGKINRAEELFGSMESMG-- 342 (595)
Q Consensus 276 -------~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~-- 342 (595)
|...|.. .+..+.+.|-+..|.++.+.+.+....-|+.....++..|+ +..+++-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2222322 34566788999999999999998866657777777787775 5667888888887764432
Q ss_pred -CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHC
Q 040027 343 -CKHDDVSYNILINGYCKNKE---VEEALSLYREMVSK 376 (595)
Q Consensus 343 -~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~ 376 (595)
.-|+-.--.+++..|..... ...|...+.++...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 23443333445556665544 45666666666654
No 419
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.69 E-value=3.8e+02 Score=29.19 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 040027 502 QMDKARDLFLDMEENAAAPDVI--TFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDA 557 (595)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 557 (595)
..+++.++-.-.....+.|-.. +....+..+.+.+++..|..+-.++++.+-.|+.
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3444444444444444455433 3455667777777777777777777776544443
No 420
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.65 E-value=1.3e+02 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHHHHhcCChHHHHHHHHhccc
Q 040027 459 IDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3345555666666666655554
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.56 E-value=1.2e+02 Score=29.76 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCc-----CHHHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRI-------LKCEL-----DIQAYNCLIDGLCKSGRLKFAWELFCSLPHG 481 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 481 (595)
..+......++..+....++.+-.+..+.-.. .|..| .-.+...|++.++-.||+..|+++++.+.-.
T Consensus 72 ~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~ 151 (404)
T PF10255_consen 72 VWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLN 151 (404)
T ss_pred cccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcc
Confidence 34445555555566666666655555544210 01011 1223456677788889999999998876321
Q ss_pred --C----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 482 --V----LVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 482 --~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+ +.+ ...++..++-+|...+++.+|++.|...+-
T Consensus 152 ~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 152 KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 345777788888899999999999988865
No 422
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.44 E-value=2.6e+02 Score=31.75 Aligned_cols=163 Identities=13% Similarity=0.007 Sum_probs=95.4
Q ss_pred HHHHHHhcCChhHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-------HhcCCCCCHhh
Q 040027 102 LINCFCKIGRVSLGFI------AFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKL-------KAFGCEPNVIT 168 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~ 168 (595)
-.......|.+.++.+ ++.+....-.+.....|..+...+-+.|+.++|+..-.+. .....+-+...
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3344555666766666 6664333323556667888888899999999998765443 22222223445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----CC--CC
Q 040027 169 YNTLINGLCRTGHTMIALNLFEEMANGNG-EIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----NI--NP 240 (595)
Q Consensus 169 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~ 240 (595)
|..+.......++...|...+.+...... ..+...|+...++..+-..+...++++.|.+..+.+... |. -.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 56666666666777777777766654322 111113444555555555555667888888888776653 10 12
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 241 DVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 241 ~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
+..++..+.+.+...+++..|+..
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHH
Confidence 344556666666666666555443
No 423
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.25 E-value=1.9e+02 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 281 NVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 281 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
..++....+.|+.++|.+.|..+...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455556666666666666666655
No 424
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.97 E-value=4e+02 Score=29.31 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=22.7
Q ss_pred HHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 217 LCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 217 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
|......+-+..+++.+....-.++....+.++..|..
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44555666677777776665444455556666655543
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.31 E-value=1.5e+02 Score=25.13 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRI 445 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~ 445 (595)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567788888888888888775
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.07 E-value=99 Score=27.99 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEEN----AA-APDVITFDMLIHGFIRINEPSKVNELLHK 547 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (595)
.++..|.+.|++++|.++|+.+... |- .+...+...+..++...|+.++...+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445555566666666666555321 10 11223334455555556665555544433
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.63 E-value=73 Score=27.43 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 483 LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 483 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
..|++.++..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888888888887774
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.62 E-value=4.5e+02 Score=29.48 Aligned_cols=139 Identities=12% Similarity=0.034 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 040027 415 ADTRTYTTFIDGLCKNGYIIE-AVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIM 493 (595)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 493 (595)
++..+-...+.++...+..+. +...+..+.. .++.......+.++...|....+...+..+.. .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 344444555555555443322 2233333332 34555556666666666655444333333332 2343333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 494 IQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDL 566 (595)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 566 (595)
+.++...+. +++...+..+++ .++...-...+.++.+......+...+..+.+ .+|..+-.....+
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 455544443 344455555443 23444444455555443223345555555553 2344444443333
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.67 E-value=6.6e+02 Score=31.13 Aligned_cols=322 Identities=8% Similarity=0.028 Sum_probs=157.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhhCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKDENI--NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK 289 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 289 (595)
.+..+-.+.+.+.+|...++.-..... .-....|..+...|..-++++....+...-.. +.. +...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455566677888888888887311100 11223344444588888888887777653111 222 3334445677
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhCCCHHHHHH
Q 040027 290 NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYN-ILINGYCKNKEVEEALS 368 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~ 368 (595)
.|++..|...|+.+.+.+. +...++..++..-...|.++..+-..+...... .+....++ .-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8899999999999888742 235566667777777777777777666554432 22222222 22334456666666555
Q ss_pred HHHHHHHCCCCCCHHHHHH--HHHHHHcc--CCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHH
Q 040027 369 LYREMVSKGIKPTVVTYNT--LFLGLFEI--HQVEHALKLFDEMQRD--------GVAAD-TRTYTTFIDGLCKNGYIIE 435 (595)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~ 435 (595)
... .. +..+|.. +.....+. .+.-...+.++.+.+. +..-+ ...|..++....-.. .+.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence 544 11 2222222 12222211 1111111122222211 00000 012222222211100 011
Q ss_pred HHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCChHHHHHHHHh-cccC----CCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 040027 436 AVELFRTLRI-LKCELDIQAYNCLIDGLCKSGRLKFAWELFCS-LPHG----VLVP-NVVTYNIMIQGLCNDGQMDKARD 508 (595)
Q Consensus 436 A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 508 (595)
-.+.+..... .....+...|..-+..-....+..+-+--+++ +... +..- -..+|...++.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111110000 00011111222222111111111111111111 1111 1221 25688888888888999999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 509 LFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
.+-.+.+.+ -+..+...+.-....|+...|..++++-++..
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887765 33445566777889999999999999988543
No 430
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.53 E-value=62 Score=21.66 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=35.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAF 119 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (595)
+.+.|++=+|.++++.+....+. +....+..+|.. +..-...+.|+...|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~-~~~~~lqglIq~------------------------A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPG-PERDFLQGLIQL------------------------AVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-C-CHHHHHHHHHHH------------------------HHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCc-chHHHHHHHHHH------------------------HHHHHHHHhCCHHHHHHhC
Confidence 45678999999999999987665 344555555543 3333456778877777654
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.17 E-value=2.2e+02 Score=25.53 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=14.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 040027 249 IHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIM 284 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 284 (595)
+..+-+.+++++....++++...+...+..--+.+.
T Consensus 8 Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLls 43 (236)
T PF00244_consen 8 AKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLS 43 (236)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence 344444444555555544444443333333333333
No 432
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.85 E-value=2.4e+02 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHH-------HHHHHHHhcCCHHHHHH
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYN-------SLIHGLCHANDWNEAKR 263 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ll~~~~~~~~~~~A~~ 263 (595)
-+..-..+.+++++|+..+.++...|+..+..+.+ .+...|...|+...--+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 45566778899999999999999998887776543 34455566665544433
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.41 E-value=45 Score=30.72 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=26.9
Q ss_pred CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 040027 485 PNVV-TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFD 526 (595)
Q Consensus 485 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 526 (595)
|+.. -|+..|....+.||+++|+.+++++...|+.--..+|.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4433 34567777777777777777777777777554444443
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.96 E-value=4.1e+02 Score=28.27 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 210 YSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
|..+..+|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 344555666666677777777766663
No 435
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.77 E-value=5e+02 Score=29.15 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 040027 380 PTVVTYNTLFLGLFEIHQVEH-ALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCL 458 (595)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 458 (595)
++...-.....++...+..+. +...+..+.+ .++...-...+.++...|....+...+..+++ .++.......
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 455555666666666655432 2344444443 45778888888889988887666555555554 4577777778
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 459 IDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+.++...+. +++...+-.+.+ .|+..+-...+.++.+.+....+...+..+++.
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 888888776 456666666664 467666666677777654445677777777763
No 436
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=4.7e+02 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC
Q 040027 487 VVTYNIMIQGLCNDGQMDKARDLFLDMEEN-AAAPDVITFDMLIHGFIRIN 536 (595)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 536 (595)
..+|..-...+..+|++..|.+++.++.+. +-.++...|..++..+...|
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 344444444444555666666665555542 22344444544555444444
No 437
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.52 E-value=2.9e+02 Score=26.33 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 504 DKARDLFLDMEENAAAPD----VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
++...++..++.. -|+ ...|..++......|.+++++.+|++++..|-.|=.+.-..+++++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 3455555555543 233 234455555555666666666666666666666666666666666653
No 438
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.11 E-value=1.4e+02 Score=22.68 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 434 IEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDM 513 (595)
Q Consensus 434 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (595)
++|..+.+-+...+ .....+-..-+..+.+.|++++| +..-... ..||...|..|.. .+.|--+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~--~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA--LLLPQCH--CYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH--HHHHTTS----GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH--HHhcccC--CCccHHHHHHHHH--HhhccHHHHHHHHHHH
Q ss_pred HHcCCCCCHHHHHH
Q 040027 514 EENAAAPDVITFDM 527 (595)
Q Consensus 514 ~~~~~~~~~~~~~~ 527 (595)
...| .|....|..
T Consensus 96 a~~g-~~~~q~Fa~ 108 (116)
T PF09477_consen 96 ASSG-SPELQAFAA 108 (116)
T ss_dssp CT-S-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.76 E-value=2.9e+02 Score=26.15 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=99.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCC-----CCCHHHHHHHHHHHHhcCChhHHH
Q 040027 42 INVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGL-----FPNLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
.+.+-.++|+.+-.-+..+-|. .|+....+.-.+....+...+....|- ..|...|+- +-.+++.
T Consensus 207 ~ra~Lc~EairLgRll~~L~p~--EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r--------~lI~eg~ 276 (415)
T COG4941 207 TRADLCDEAIRLGRLLARLLPG--EPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDR--------ALIDEGL 276 (415)
T ss_pred ccchHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhH--------HHHHHHH
Confidence 5667788999998888888887 444443333333333333322222231 246666763 2346777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh------cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKGLHA------ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFE 190 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (595)
.+++++...+ .|.+......|.++.. .-++..-..+|+.+..... ++.+-.+-..+.....-.+.++.+++
T Consensus 277 all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve 353 (415)
T COG4941 277 ALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVE 353 (415)
T ss_pred HHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHH
Confidence 8888888776 3667666666655432 2355556677777776643 33322222233333444556666666
Q ss_pred HHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 191 EMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
-+...+. ..--...+..-...+.+.|+.++|...|+.....
T Consensus 354 ~L~~~~~-----L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 354 ALLARPR-----LDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred Hhhcccc-----cccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 6655431 1111222334456677778888888888777654
No 440
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.70 E-value=1.8e+02 Score=30.13 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh------HHHHHHHHHhhCCCCCCHhH
Q 040027 171 TLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD------KAKALFLQMKDENINPDVVT 244 (595)
Q Consensus 171 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~ 244 (595)
+|+.+|...|++..+.++++.....+.. -+.-..-+|..+....+.|.++ .|.++++...- .-|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~----~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t 105 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG----DKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLT 105 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC----CeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchH
Confidence 6777777777777777777777654411 1112344666666666666653 34444444442 235666
Q ss_pred HHHHHHH
Q 040027 245 YNSLIHG 251 (595)
Q Consensus 245 ~~~ll~~ 251 (595)
|..|+.+
T Consensus 106 ~all~~~ 112 (1117)
T COG5108 106 YALLCQA 112 (1117)
T ss_pred HHHHHHh
Confidence 6655544
No 441
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.40 E-value=1.2e+02 Score=24.73 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=28.2
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 040027 232 QMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNR 291 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 291 (595)
.+.+.|.+++. .-..++..+...++.-.|.++|+.+.+.+...+..|....+..+...|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444332 233344555555555566666666665544444444444444444443
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.88 E-value=83 Score=19.66 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=17.8
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 142 HAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 142 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555666666666666555555554443
No 443
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.74 E-value=1.5e+02 Score=30.83 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 040027 457 CLIDGLCKSGRLKFAWELFCSLPHGV--LVPNVVTYNIMIQGLCNDGQMD------KARDLFLDMEENAAAPDVITFDML 528 (595)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 528 (595)
.++.+|...|++..+.++++.+...+ -+.-...+|..++.+.+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887632 1222457788888888888764 3444444444 34577777766
Q ss_pred HHHH
Q 040027 529 IHGF 532 (595)
Q Consensus 529 ~~~~ 532 (595)
..+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 444
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.73 E-value=85 Score=29.03 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHH
Q 040027 92 LFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNS-LIKGLHAESRIMEAAALFTKLKAFGCEPNVITYN 170 (595)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (595)
...|+..|...+.-..+.|.+.+.-.+|.++.+.. |.|+..|-. -.--+...++++.+..+|.+.++.+. .++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~-~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS-RSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC-CCchHHH
Confidence 34578888888877777788888888888888774 567776654 23335667888888888888777653 3555554
Q ss_pred HHH
Q 040027 171 TLI 173 (595)
Q Consensus 171 ~l~ 173 (595)
...
T Consensus 181 eyf 183 (435)
T COG5191 181 EYF 183 (435)
T ss_pred HHH
Confidence 443
No 445
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.28 E-value=1.8e+02 Score=23.34 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=42.2
Q ss_pred CcCHHHHHHHHHHHHhcCC---hHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 449 ELDIQAYNCLIDGLCKSGR---LKFAWELFCSLPHGVLVP--NVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
.++..+-..+..++.+..+ ..+.+.+++.+.+. -.| .......|.-++.+.++++++.++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555666666665544 45566777777652 122 2344456667777888888888888877775
No 446
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.30 E-value=1.5e+02 Score=22.11 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 040027 507 RDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIV 560 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 560 (595)
.+.++++...+....+.....|.-.|.+.|+.+.|.+-|+.=.. +-|...+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 44455555544333333444556667778888877777776554 45655544
No 447
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.98 E-value=1.5e+02 Score=22.20 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 040027 460 DGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF 525 (595)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (595)
..+.+.|++++|..+.+... .||...|..|. -.+.|--+++..-+.++...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567788888888877663 57777776553 346676677777677777665 4444444
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.87 E-value=2.9e+02 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 415 ADTRTYTTFIDGLCKNGYIIEAVELFR 441 (595)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 441 (595)
-++.....+...|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 355666777777778887777776553
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.65 E-value=1.4e+02 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=18.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
|......+...+...|++++|++.+-.+.+.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55566666666666666666666666666554
No 450
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.15 E-value=3.3e+02 Score=25.80 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=37.8
Q ss_pred HHHHHhcCChHHHHHHHHhcccC---CCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCH
Q 040027 459 IDGLCKSGRLKFAWELFCSLPHG---VLVPNVVTY--NIMIQGLCNDGQMDKARDLFLDMEE-----NAAAPDV 522 (595)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 522 (595)
+...-+.++.++|+++++++.+. .-.|+...+ ...++++...||..++.+.+.+..+ .+++++.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33444556777777777777652 123444433 3444566677777777777776665 3555543
No 451
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.77 E-value=76 Score=29.32 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 519 APDVI-TFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSI 562 (595)
Q Consensus 519 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 562 (595)
.|+.. .|+..|..-.+.||+++|+++++++.+.|+.--..++-.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 35544 457899999999999999999999999997655555443
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.22 E-value=29 Score=27.42 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASL 77 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (595)
.-+.+.|.-.+|-.+|.+|++.|- .|..|+.|+...
T Consensus 103 ~tlR~ygsk~DaY~VF~kML~~G~---pPddW~~Ll~~a 138 (140)
T PF11663_consen 103 QTLRAYGSKTDAYAVFRKMLERGN---PPDDWDALLKEA 138 (140)
T ss_pred cchhhhccCCcHHHHHHHHHhCCC---CCccHHHHHHHh
Confidence 355677999999999999999874 556899888654
No 453
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.71 E-value=3.5e+02 Score=25.65 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH------hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 040027 432 YIIEAVELFRTLRILKCELDIQAYNCLIDGLC------KSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDK 505 (595)
Q Consensus 432 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 505 (595)
-++++..++++...++ .|.+......+.++. ..-+|.....+|+.+.. +.|++.+-.+-.-+..+..-.+.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHh
Confidence 3566677777777666 466666665555543 22456667777777666 45554332222333344444556
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 506 ARDLFLDMEENA-AAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 506 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
++...+-+.+.+ +..-...+..-...+.+.|+.++|...|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666665542 1111222333455667788888888888888763
No 454
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=38.50 E-value=1.6e+02 Score=21.58 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCC
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-NVITYNTLINGLCRTGH 181 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 181 (595)
+.|......+...+...|++++|++.+-.+.+..... +......++..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 5566777778888888888888888887777663222 33344455555444444
No 455
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.07 E-value=94 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 527 MLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 527 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.++..+...+..-.|.++++.+.+.+...+..|....++.|.+.|...
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 455666666667888888888888777778888888888888888776
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.70 E-value=2.6e+02 Score=27.52 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 040027 381 TVVTYNTLFLGLFEIHQVEHALKLFDEMQRD-------GVAAD-----TRTYTTFIDGLCKNGYIIEAVELFRTLRIL-- 446 (595)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 446 (595)
+......++.++....+..+.++..+..... |..|- -.+...+++.++-.|++..|+++++.+.-.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 4444455566666666666655554442111 11111 123456677888899999999999876321
Q ss_pred ----C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 447 ----K-CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 447 ----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
. ..-...++-.++-+|...+++.+|.+.|..+.-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122345677788899999999999999998874
No 457
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.66 E-value=1.7e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=-0.052 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 151 AALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
.+-++++...+....+.....|...|++.|+.+.+.+-|+.-...
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 345566665554444555666777788888888888888876654
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.44 E-value=2.1e+02 Score=22.64 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPDV-ITFDMLIHGFIRINEPSKVNELLH 546 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 546 (595)
++..++|..|...++.-.. ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467788888887766554 345666777778888888888875
No 459
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.82 E-value=4e+02 Score=25.83 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=38.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Q 040027 354 INGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGL-FEIHQVEHALKLFDEMQR 410 (595)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 410 (595)
+....+.|.+..|+++.+-+...++.-|+......+..| .+.++++-.+++++....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 556677788888888888877776555666666666655 356677767777666544
No 460
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.79 E-value=1.1e+02 Score=23.42 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=27.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 040027 494 IQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPS 539 (595)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 539 (595)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3444444555566666666666655556666666666666666543
No 461
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.65 E-value=3.8e+02 Score=29.15 Aligned_cols=131 Identities=13% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 105 CFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
.+..+|+++.|++...++- +..+|..|......+|+.+-|...|++.... ..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHH
Confidence 3556788888877665433 6788999999999999999999888887653 334445666788877
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
-.++-..+..++ |... ......-.|+.++-.++++..-.. +..|.. ....|.-++|.++
T Consensus 717 L~Km~~iae~r~---------D~~~---~~qnalYl~dv~ervkIl~n~g~~-----~laylt----a~~~G~~~~ae~l 775 (1202)
T KOG0292|consen 717 LSKMMKIAEIRN---------DATG---QFQNALYLGDVKERVKILENGGQL-----PLAYLT----AAAHGLEDQAEKL 775 (1202)
T ss_pred HHHHHHHHHhhh---------hhHH---HHHHHHHhccHHHHHHHHHhcCcc-----cHHHHH----HhhcCcHHHHHHH
Confidence 777666555433 2211 122223357777777776654331 222321 2345777788888
Q ss_pred HHHHHHC
Q 040027 265 FIEMMDQ 271 (595)
Q Consensus 265 ~~~~~~~ 271 (595)
.++...+
T Consensus 776 ~ee~~~~ 782 (1202)
T KOG0292|consen 776 GEELEKQ 782 (1202)
T ss_pred HHhhccc
Confidence 8777654
No 462
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.54 E-value=6.8e+02 Score=28.07 Aligned_cols=109 Identities=9% Similarity=0.055 Sum_probs=64.5
Q ss_pred hhhhhhcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHH
Q 040027 26 SSLLVHFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINC 105 (595)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (595)
++...+.+-+.-.+++++-..|+.|+..|++....-|+ -...+.+..+ .|+ +++.-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------------~~~--------~~~~~ 525 (932)
T PRK13184 470 SSGALRVSCLAVPDAFLAEKLYDQALIFYRRIRESFPG--RKEGYEAQFR--------------LGI--------TLLEK 525 (932)
T ss_pred ecCceeeecccCcHHHHhhHHHHHHHHHHHHHhhcCCC--cccchHHHHH--------------hhH--------HHHHH
Confidence 34556666677778888899999999999999888887 3333332221 111 23332
Q ss_pred HHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 106 FCKIG---RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 106 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
-...| .+.+|+..|+.+... +.-+--|..-+-.|.+.|++++-++.+.-..++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 526 ASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 22333 356666667666543 222223333344566777777777766665554
No 463
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.82 E-value=2.5e+02 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 040027 502 QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEP 538 (595)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 538 (595)
..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455566666665555444555555555555555543
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.58 E-value=84 Score=23.98 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666555
No 465
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.49 E-value=35 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 532 FIRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
....|.-.+|..+|++|++.|-+||. |+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34557778899999999999977764 444443
No 466
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.27 E-value=4.7e+02 Score=25.82 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=8.3
Q ss_pred HHHHHhcCChhHHHHHH
Q 040027 173 INGLCRTGHTMIALNLF 189 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~ 189 (595)
+...+..|+.+....++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33444556655544444
No 467
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.57 E-value=1e+02 Score=17.89 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKVNELLH 546 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~ 546 (595)
.+..+.-.+...|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556777788899999999844
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.91 E-value=3e+02 Score=23.14 Aligned_cols=45 Identities=11% Similarity=-0.072 Sum_probs=26.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 040027 495 QGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPS 539 (595)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 539 (595)
..+...++.-.|.++++++.+.+...+..|...-+..+...|-..
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 333334455566677777766655556666656666666666543
No 469
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.75 E-value=1.3e+02 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356666667777777777777766655
No 470
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.73 E-value=7.4e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 311 NACTYNTLMDGFCLMGKINRAEELFGS 337 (595)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (595)
....|..+...+.+.++.++|+..-..
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 344556666666666666666655443
No 471
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.31 E-value=1.3e+02 Score=27.92 Aligned_cols=65 Identities=6% Similarity=0.044 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHC
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDM-LIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
|+..|...+.-..+.|.+.+.-.++.+..... |.|...|.. ...-|...++++.+..+|.+.+..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34444444433334445555555555555542 333333322 222334445555555555555543
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.01 E-value=7.4e+02 Score=27.43 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 286 ELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC 323 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (595)
.+......+-+..+++.+....-..+....+.++..|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 45556666777777777766544445555555555554
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.97 E-value=2.6e+02 Score=22.09 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 040027 184 IALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQ 232 (595)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (595)
.+.++|..|...+- ...-+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~I-----G~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGI-----GTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT-----STTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777666551 122355666666667777777777777654
No 474
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.72 E-value=3e+02 Score=25.69 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 438 ELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
++++.+.+.++.|.-.++.-+--.+.+.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555666666665555555555556666666666654
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.23 E-value=5.3e+02 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 360 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 391 (595)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (595)
..+.+.|+..+..|++.|..|....-..+..+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777777778887777766554444444333
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.18 E-value=2.9e+02 Score=23.16 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=41.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChh
Q 040027 124 RSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTM 183 (595)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (595)
..|.... ..-..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 19 ~~GlR~T-~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 19 QRNVRLT-PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HcCCCCC-HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3454433 3334566666666777789999999998887777777777778887777543
No 477
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.11 E-value=4.5e+02 Score=24.63 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=60.8
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----------cCChhHH
Q 040027 472 WELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIR----------INEPSKV 541 (595)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 541 (595)
.++|+.+.+.++.|.-..+..+...+.+.=.+.+.+.+|+.+... +.-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777778889999888888888888888999999999999863 2236666666653 3666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 542 NELLHKMKEKKVMPDASIVSIVVDLLV 568 (595)
Q Consensus 542 ~~~~~~~~~~~~~p~~~~~~~l~~~~~ 568 (595)
.++++.- ...|....-++.+.+.
T Consensus 338 mkLLQ~y----p~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 338 MKLLQNY----PTTDISKMLAVADSLR 360 (370)
T ss_pred HHHHhcC----CCCCHHHHHHHHHHHH
Confidence 5554432 1235555555555554
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.02 E-value=6.1e+02 Score=26.18 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=102.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcc-----ccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHh-------hCCCCC------
Q 040027 179 TGHTMIALNLFEEMANGNGEIGVV-----CKPNTVTYSTIIDGLCKEGFVDKAKALFLQMK-------DENINP------ 240 (595)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~------ 240 (595)
...++++...|.-........+.. .|-...+...+..++...|+.+.+..+.++.. ...+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456678888887776654322211 12234455666778888999888777666542 222211
Q ss_pred -------CHhHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHHCC--
Q 040027 241 -------DVVTYNSL---IHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELC-KNRKMDEASRLLDLMVQRG-- 307 (595)
Q Consensus 241 -------~~~~~~~l---l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-- 307 (595)
|...|.+| +..+.+.|-|..|+++.+.+......-|+.....++..|+ +..++.=.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 22233333 3556789999999999999988765556777777777664 6678888888887775432
Q ss_pred -CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhc
Q 040027 308 -VRPNACTYNTLMDGFCLMGK---INRAEELFGSMESM 341 (595)
Q Consensus 308 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 341 (595)
.-|+-..-..++..|..... -+.|...+.++...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 33555444556666666555 45566666666554
No 479
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.21 E-value=1.8e+02 Score=19.76 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 485 PNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 485 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
|....++.++..++...-.++++..+.++.+.| ..+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 444555666666666666666666666666665 345555544444443
No 480
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.01 E-value=4e+02 Score=23.73 Aligned_cols=168 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040027 294 DEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 373 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (595)
.+...+++.+...+.. +..-...+...+...+.... .....+....-.-|.......-.-.+...+++++|++.+
T Consensus 27 ~~L~~Ll~~i~~~~~~-~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L--- 101 (226)
T PF13934_consen 27 NDLRALLDLILSSNVS-LLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL--- 101 (226)
T ss_pred HHHHHHHHHHhcCCcC-HHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh---
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 040027 374 VSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQ 453 (595)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 453 (595)
..+.....-...++.++...|+...|..+++..... ..+......++.. ..++.+.+|..+-+.... .....
T Consensus 102 --~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~---~~~~~ 173 (226)
T PF13934_consen 102 --SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYPD---ELRRR 173 (226)
T ss_pred --CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch---hhhHH
Q ss_pred HHHHHHHHHH----hcCChHHHHHH
Q 040027 454 AYNCLIDGLC----KSGRLKFAWEL 474 (595)
Q Consensus 454 ~~~~l~~~~~----~~g~~~~A~~~ 474 (595)
.+..++..+. +.+..++-..+
T Consensus 174 l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 174 LFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhC
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.99 E-value=1.5e+02 Score=22.72 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChh
Q 040027 137 LIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTM 183 (595)
Q Consensus 137 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (595)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44455555566667777777777766667666666667776666543
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.23 E-value=5.8e+02 Score=25.34 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=49.7
Q ss_pred cchhhhhhhcccccccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHcCCCchh---------HHhh---
Q 040027 23 SNFSSLLVHFRDLTTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFN-ILLASLAKNKHYDT---------RLNA--- 89 (595)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~---------~~~~--- 89 (595)
.-.+.+..|.....++..++.+|.++.|.+++++-+..- +-..+. ..+..|....-+-. .-..
T Consensus 110 ~g~~~~~~W~~nS~laadhvAAGsFetAm~LLnrQiGiv----nF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~ 185 (422)
T PF06957_consen 110 PGSSESQIWVRNSSLAADHVAAGSFETAMQLLNRQIGIV----NFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNW 185 (422)
T ss_dssp ---HHHHHHHHH--SHHHHHHCT-HHHHHHHHHHHC-B-------GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTT
T ss_pred CCCCHHHHHHHcCCcHHHHHHhCCHHHHHHHHHHHhCcc----ccHHHHHHHHHHHHhhceecccCCCCCCccccccCCc
Confidence 344556678888888888999999999999999876542 333333 34445544433322 0001
Q ss_pred ------CCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhC
Q 040027 90 ------TGLFPNLYTYNIL------INCFCKIGRVSLGFIAFGRILRS 125 (595)
Q Consensus 90 ------~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~ 125 (595)
.+++.-+..++.| ...+...|++.+|+..|+.++..
T Consensus 186 ~~~~~~~~lP~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 186 DESNPKNGLPAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp TTSSSCCG-BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1111111222222 22345678888888888877653
No 483
>PRK09857 putative transposase; Provisional
Probab=29.14 E-value=4.4e+02 Score=24.65 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 493 MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
++......++.++-.++++...+. .+.......+++.-+...|..+++.++.++|...|+.++
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 333334455655556666555554 233344455566666666766777788888887776544
No 484
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=5.2e+02 Score=26.52 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHH-HHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAK-ALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
+++++.....+ .+....+.++......+.-++.. ++++.+.+.+.......|..++.++...++.+.|.++
T Consensus 159 ldiie~~l~~~--------~d~di~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L 230 (926)
T COG5116 159 LDIIEKYLSDG--------NDCDIINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKAL 230 (926)
T ss_pred HHHHHHHHhCC--------CcccHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHH
Confidence 34555555544 23334445555544444333332 3444444433222222344566667777888888888
Q ss_pred HHHHHHC
Q 040027 265 FIEMMDQ 271 (595)
Q Consensus 265 ~~~~~~~ 271 (595)
+.++.+.
T Consensus 231 ~~kL~~e 237 (926)
T COG5116 231 IEKLVKE 237 (926)
T ss_pred HHHHHhh
Confidence 8887765
No 485
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.09 E-value=1.5e+02 Score=26.22 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=37.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 040027 356 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG 412 (595)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 412 (595)
+..+.++.+.+.+++.+....-+. ....|..+.....+.|+.+.|.+.|++..+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 344567777777777777664222 45566667666777777777777777777653
No 486
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.00 E-value=7.8e+02 Score=26.43 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------hhHHHHHHHHHhcC
Q 040027 225 KAKALFLQMKDENINPD---VVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV----------VTFNVIMDELCKNR 291 (595)
Q Consensus 225 ~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g 291 (595)
+--.++.+|+.+--.|+ ..+...++-.|....+++...++.+.+.+. ||. ..|...++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 34455666766522233 344555666777777888888888777664 321 11222333333456
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhc
Q 040027 292 KMDEASRLLDLMVQRG--VRPNACTYNTLMDGF---------CLMGKINRAEELFGSMESM 341 (595)
Q Consensus 292 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~ 341 (595)
+-+.|+...-.+++.. +.||. |....+.| ...+..+.|...|++.-+.
T Consensus 258 DRakAL~~~l~lve~eg~vapDm--~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDM--YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCce--eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 6777777766666542 33443 22222322 2334456677777766554
No 487
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.80 E-value=9.1e+02 Score=27.15 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 456 NCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
..-+.+|.-..++++|-++++.........+ ...+-....-++-.++-+-|...|....+
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 808 VYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 4456667777778888887766554322222 12222222222345555666666665553
No 488
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=27.06 E-value=3.5e+02 Score=30.27 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=48.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040027 499 NDGQMDKARDLFLDMEENAAAPDV-ITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEIS 573 (595)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 573 (595)
....+.++..+|..|...|+.... ..|..+...+.+.+.+.+|..+|+.-++..-.|-......+.....+.|+-
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 445667777777777777666554 344555666667777777877777777666666665555555555444443
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.85 E-value=5.7e+02 Score=24.47 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 328 INRAEELFGSMESMGCKHDD----VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 391 (595)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (595)
.++...++..+++. .|+. .-|..++......|.++.++.+|++++..|..|-...-..++..
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34555555555543 2333 24555666666677777777777777777766654444444433
No 490
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.83 E-value=2.5e+02 Score=20.42 Aligned_cols=9 Identities=33% Similarity=0.316 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 040027 328 INRAEELFG 336 (595)
Q Consensus 328 ~~~a~~~~~ 336 (595)
.+.|.+++.
T Consensus 52 ~~~ar~LL~ 60 (88)
T cd08819 52 ESGARELLK 60 (88)
T ss_pred HHHHHHHHH
Confidence 333333333
No 491
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.72 E-value=1.3e+02 Score=26.57 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=43.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILK 447 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 447 (595)
...+.++.+.+.+++.+.... .+.....|-.+...-.+.|+++.|.+-|++..+.+
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345678888888888888876 35566777777777888888999988888888765
No 492
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.32 E-value=3.4e+02 Score=21.70 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 493 MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDM-LIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
++--+...|+++.|+++.+.+++.|.+ -+..|.. +...+ .++......+..+.|-..++..+..+..
T Consensus 54 ~mvW~~D~Gd~~~AL~~a~yAi~~~l~-~P~~f~R~~~t~v-----aeev~~~a~~~~~~g~~~~~~~l~~~~~ 121 (132)
T PF05944_consen 54 VMVWLFDVGDFDGALDIAEYAIEHGLP-MPDRFKRTLPTFV-----AEEVADWALRAAKAGQSFEPYFLSRVFE 121 (132)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHcCCC-ccccccCcchHHH-----HHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 333456788888888888888887743 2222221 11111 1334444444455565556655554443
No 493
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.11 E-value=5.4e+02 Score=24.48 Aligned_cols=99 Identities=15% Similarity=0.002 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCF-TP--NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
...|-.=.+-|.+..++..|...|.+.++... .| +...|+.-..+-.-.|++..|+.=....+..... ....|..-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhh
Confidence 34555667788899999999999999887642 23 3556777676667778998888877777776422 45555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 040027 173 INGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
..++....++++|....++....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 56666677777777777766543
No 494
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.71 E-value=2.3e+02 Score=21.97 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
..++..+...+..-.|.++++.+...+...+..|...-+..+...|-.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 456666666666778888888888877777777666667777666643
No 495
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.47 E-value=1.4e+02 Score=20.90 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=14.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 535 INEPSKVNELLHKMKEKKVMPDASIVSIVVDLLV 568 (595)
Q Consensus 535 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 568 (595)
.|+.+.+.+++++..+.|+.|.......+..++.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444555555555554444444444443333333
No 496
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.35 E-value=3.1e+02 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=16.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 533 IRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 533 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
.++...++|+++++-|.++| .-+...-..|-..+.+
T Consensus 72 rRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 72 RRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred HHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444455555555555544 3344443433333333
No 497
>PRK12798 chemotaxis protein; Reviewed
Probab=25.32 E-value=6.7e+02 Score=24.75 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=40.6
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCC
Q 040027 144 ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC-RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGF 222 (595)
Q Consensus 144 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 222 (595)
.|+..++.+.+..+.....++....+..|+.+-. ...+..+|++.|+...-.-.. .-........-+......|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPG----TLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPG----TLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCc----hHHHHHHHHHhhHHHHhcCc
Confidence 3555566665555555444444444444444332 234555566666554432100 11122334444445555566
Q ss_pred HhHHHHHHHHHh
Q 040027 223 VDKAKALFLQMK 234 (595)
Q Consensus 223 ~~~A~~~~~~~~ 234 (595)
.+++..+-....
T Consensus 201 ~~rf~~la~~Y~ 212 (421)
T PRK12798 201 ADKFEALARNYL 212 (421)
T ss_pred HHHHHHHHHHHH
Confidence 665554444433
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.10 E-value=6.8e+02 Score=24.81 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHHcCCCcC
Q 040027 431 GYIIEAVELFRTLRILKCELD 451 (595)
Q Consensus 431 g~~~~A~~~~~~~~~~~~~~~ 451 (595)
.+.+.|..++.++.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554333
No 499
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=24.43 E-value=9.5e+02 Score=26.23 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=11.7
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 040027 286 ELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~ 305 (595)
++.-.|+++.|+.++.....
T Consensus 477 ~LlLsgqfe~AI~fL~~~~~ 496 (835)
T KOG2168|consen 477 VLLLSGQFERAIEFLHREEP 496 (835)
T ss_pred HHHHHHhHHHHHHHHHhhcC
Confidence 33445667777766665543
No 500
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.39 E-value=6.9e+02 Score=24.60 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=27.6
Q ss_pred CHhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 276 SVVTFNVIMDELCK---NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMG 326 (595)
Q Consensus 276 ~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (595)
+...+..++.++.+ -.+.+.|+-++.+|++.|-.|....-..+..++..-|
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 33344445555443 3567777777777777776554444444444444433
Done!