Query 040027
Match_columns 595
No_of_seqs 669 out of 3899
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 06:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-41 1.3E-45 350.7 40.1 482 66-568 83-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3E-39 1E-43 336.4 39.6 479 90-581 78-574 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.4E-29 1.8E-33 244.1 50.0 376 142-535 10-386 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-29 1.2E-33 245.4 47.9 383 172-572 5-388 (388)
5 2gw1_A Mitochondrial precursor 100.0 4.4E-26 1.5E-30 232.5 39.4 442 96-557 6-482 (514)
6 4g26_A Pentatricopeptide repea 100.0 1.9E-27 6.6E-32 236.3 24.2 185 385-569 29-222 (501)
7 4g26_A Pentatricopeptide repea 100.0 1.1E-26 3.9E-31 230.7 25.4 185 350-534 29-222 (501)
8 2gw1_A Mitochondrial precursor 99.9 7.2E-25 2.5E-29 223.5 36.1 435 131-581 6-473 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.9E-24 9.8E-29 220.3 39.3 436 95-552 24-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4E-23 1.4E-27 206.7 42.6 316 128-480 23-357 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.2E-27 203.2 42.6 371 185-574 11-442 (450)
12 3fp2_A TPR repeat-containing p 99.9 5E-23 1.7E-27 211.1 36.7 428 131-581 25-486 (537)
13 2xm6_A Protein corresponding t 99.9 4.3E-19 1.5E-23 179.0 51.3 364 115-517 26-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 2.1E-20 7.3E-25 180.7 40.0 331 206-569 2-352 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 6.9E-20 2.3E-24 177.1 41.3 331 95-463 2-351 (359)
16 2xm6_A Protein corresponding t 99.9 2E-18 6.7E-23 174.2 50.9 352 95-482 38-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 7.2E-19 2.5E-23 179.2 47.3 421 95-550 12-491 (530)
18 3hym_B Cell division cycle pro 99.9 8.7E-20 3E-24 174.2 33.1 292 276-574 21-322 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2.1E-18 7.3E-23 175.7 44.7 428 119-584 2-497 (530)
20 3hym_B Cell division cycle pro 99.9 3.3E-19 1.1E-23 170.1 33.2 298 165-503 21-321 (330)
21 1xi4_A Clathrin heavy chain; a 99.9 1.3E-16 4.4E-21 168.0 53.2 465 43-581 851-1379(1630)
22 1fch_A Peroxisomal targeting s 99.8 5.2E-19 1.8E-23 171.7 26.9 263 278-548 65-356 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 2.2E-16 7.7E-21 166.2 47.6 397 39-500 993-1414(1630)
24 1fch_A Peroxisomal targeting s 99.8 6.7E-19 2.3E-23 170.9 26.4 305 143-480 37-358 (368)
25 4g1t_A Interferon-induced prot 99.8 2.7E-17 9.1E-22 165.4 35.6 371 165-552 50-460 (472)
26 4eqf_A PEX5-related protein; a 99.8 5.5E-19 1.9E-23 171.3 21.5 265 277-547 65-352 (365)
27 4g1t_A Interferon-induced prot 99.8 5.5E-17 1.9E-21 163.1 36.4 384 95-517 50-460 (472)
28 4eqf_A PEX5-related protein; a 99.8 4.8E-18 1.6E-22 164.6 25.8 267 94-371 63-351 (365)
29 1b89_A Protein (clathrin heavy 99.8 3.5E-18 1.2E-22 161.5 22.9 284 108-440 15-305 (449)
30 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.2E-22 159.0 26.3 263 280-549 24-313 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 3.9E-17 1.3E-21 151.6 26.6 252 286-550 8-263 (291)
32 1b89_A Protein (clathrin heavy 99.8 1.8E-18 6E-23 163.5 17.0 374 142-574 14-405 (449)
33 3cv0_A Peroxisome targeting si 99.8 2.5E-17 8.5E-22 156.9 25.2 278 207-514 21-313 (327)
34 3mkr_A Coatomer subunit epsilo 99.8 9.3E-17 3.2E-21 149.0 27.4 247 217-480 9-263 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.4E-16 8.4E-21 156.2 25.5 188 314-517 178-388 (452)
36 3e4b_A ALGK; tetratricopeptide 99.7 5E-16 1.7E-20 154.0 24.8 379 101-515 8-420 (452)
37 2pl2_A Hypothetical conserved 99.7 7.3E-16 2.5E-20 136.6 21.6 198 346-549 4-212 (217)
38 4e6h_A MRNA 3'-END-processing 99.7 4.2E-13 1.4E-17 137.3 44.6 413 95-516 65-570 (679)
39 2pl2_A Hypothetical conserved 99.7 9.6E-16 3.3E-20 135.9 22.0 200 93-304 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.7 3.4E-15 1.2E-19 136.6 25.7 223 314-550 7-235 (258)
41 3uq3_A Heat shock protein STI1 99.7 9E-15 3.1E-19 133.8 25.2 117 395-515 118-235 (258)
42 3u4t_A TPR repeat-containing p 99.7 1E-14 3.5E-19 134.6 25.2 247 96-353 3-261 (272)
43 4e6h_A MRNA 3'-END-processing 99.7 1.2E-12 4E-17 134.0 42.0 445 111-567 47-584 (679)
44 3u4t_A TPR repeat-containing p 99.7 1.2E-14 4E-19 134.3 24.9 251 314-570 5-268 (272)
45 2h6f_A Protein farnesyltransfe 99.7 2.4E-14 8.2E-19 137.3 27.7 249 95-357 96-363 (382)
46 2h6f_A Protein farnesyltransfe 99.7 1.3E-14 4.5E-19 139.0 25.6 248 312-569 97-365 (382)
47 1ouv_A Conserved hypothetical 99.7 2.6E-13 8.8E-18 125.3 32.7 224 311-552 5-252 (273)
48 1ouv_A Conserved hypothetical 99.7 2.8E-13 9.6E-18 125.0 32.3 223 95-341 5-251 (273)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.8E-15 3E-19 135.3 20.0 255 38-335 12-269 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.8E-14 9.4E-19 132.0 22.5 243 291-545 19-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-14 8.4E-19 129.6 21.6 211 348-564 24-234 (243)
52 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-13 1.3E-17 122.5 27.9 202 96-306 37-238 (252)
53 2ho1_A Type 4 fimbrial biogene 99.6 3.6E-13 1.2E-17 122.6 27.4 197 315-515 40-237 (252)
54 2q7f_A YRRB protein; TPR, prot 99.6 4.6E-14 1.6E-18 127.8 21.4 211 312-528 23-233 (243)
55 3spa_A Mtrpol, DNA-directed RN 99.6 5.7E-16 2E-20 158.3 8.8 154 414-572 124-287 (1134)
56 2vq2_A PILW, putative fimbrial 99.6 2.6E-13 9E-18 121.0 25.1 199 347-550 8-210 (225)
57 2vq2_A PILW, putative fimbrial 99.6 4.8E-13 1.6E-17 119.4 26.6 204 95-306 7-211 (225)
58 3sf4_A G-protein-signaling mod 99.6 3.7E-14 1.3E-18 139.3 20.5 226 349-574 89-364 (406)
59 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-15 5.3E-20 155.1 9.6 126 449-574 124-253 (1134)
60 4a1s_A PINS, partner of inscut 99.6 8.4E-14 2.9E-18 137.1 21.0 278 96-375 48-371 (411)
61 4a1s_A PINS, partner of inscut 99.6 4.4E-14 1.5E-18 139.1 18.4 279 244-551 50-372 (411)
62 3sf4_A G-protein-signaling mod 99.6 5.8E-14 2E-18 137.9 19.2 281 93-375 6-335 (406)
63 2ond_A Cleavage stimulation fa 99.6 1.2E-12 4E-17 123.0 26.4 225 48-306 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.7E-18 132.0 17.5 275 245-551 8-332 (338)
65 2ond_A Cleavage stimulation fa 99.5 5E-12 1.7E-16 118.7 28.2 217 113-340 33-269 (308)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-12 4.9E-17 112.1 22.3 165 381-550 4-169 (184)
67 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.1E-18 130.5 18.2 278 96-375 5-331 (338)
68 4abn_A Tetratricopeptide repea 99.5 3.6E-13 1.2E-17 134.3 20.3 211 329-547 85-317 (474)
69 3ulq_A Response regulator aspa 99.5 2E-12 6.9E-17 125.7 24.9 226 217-444 22-291 (383)
70 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-12 7.5E-17 111.0 22.3 162 349-515 7-169 (184)
71 3ulq_A Response regulator aspa 99.5 1.3E-12 4.4E-17 127.1 22.8 297 251-550 21-367 (383)
72 4abn_A Tetratricopeptide repea 99.5 4E-12 1.4E-16 126.8 22.0 192 277-474 102-314 (474)
73 3nf1_A KLC 1, kinesin light ch 99.5 7.4E-13 2.5E-17 124.7 15.6 244 278-550 28-306 (311)
74 3q15_A PSP28, response regulat 99.4 2.1E-11 7.1E-16 118.3 24.2 312 204-550 7-364 (378)
75 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 5E-17 122.7 14.5 172 204-375 24-223 (311)
76 3q15_A PSP28, response regulat 99.4 3.6E-11 1.2E-15 116.5 24.4 226 352-581 106-360 (378)
77 1hz4_A MALT regulatory protein 99.4 2E-10 6.9E-15 111.1 29.4 163 387-549 140-320 (373)
78 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.6E-15 112.4 27.7 277 99-375 17-321 (373)
79 4i17_A Hypothetical protein; T 99.4 8.2E-11 2.8E-15 105.0 22.9 206 346-565 6-222 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.5E-16 126.2 21.1 162 383-549 10-172 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.4 1.9E-11 6.6E-16 126.6 20.3 166 95-270 8-173 (723)
82 4i17_A Hypothetical protein; T 99.4 9.5E-11 3.3E-15 104.6 22.0 208 94-320 5-222 (228)
83 3as5_A MAMA; tetratricopeptide 99.4 6.3E-11 2.1E-15 101.8 20.1 163 384-550 10-172 (186)
84 3as5_A MAMA; tetratricopeptide 99.4 7.8E-11 2.7E-15 101.2 20.5 164 97-270 9-172 (186)
85 2uy1_A Cleavage stimulation fa 99.3 1.1E-08 3.8E-13 101.7 32.9 385 108-550 6-412 (493)
86 2uy1_A Cleavage stimulation fa 99.3 1.3E-08 4.6E-13 101.1 31.6 125 383-515 287-412 (493)
87 3edt_B KLC 2, kinesin light ch 99.3 9.7E-11 3.3E-15 108.3 15.3 227 323-550 12-280 (283)
88 3edt_B KLC 2, kinesin light ch 99.3 1.6E-10 5.3E-15 106.9 16.6 164 107-270 12-197 (283)
89 3mv2_B Coatomer subunit epsilo 99.2 7.2E-09 2.5E-13 94.0 25.4 178 366-550 85-281 (310)
90 1qqe_A Vesicular transport pro 99.2 1.4E-09 4.8E-14 100.9 20.5 205 114-341 3-228 (292)
91 3urz_A Uncharacterized protein 99.2 7.1E-10 2.4E-14 97.1 17.1 191 348-565 5-198 (208)
92 3qky_A Outer membrane assembly 99.2 1.4E-09 4.6E-14 99.3 19.4 102 94-196 13-127 (261)
93 3urz_A Uncharacterized protein 99.2 1.1E-09 3.9E-14 95.8 18.1 181 95-305 3-185 (208)
94 4ga2_A E3 SUMO-protein ligase 99.2 9.8E-11 3.3E-15 96.4 9.8 143 424-572 4-149 (150)
95 2pzi_A Probable serine/threoni 99.2 4.2E-10 1.4E-14 117.4 16.8 152 95-257 432-583 (681)
96 1qqe_A Vesicular transport pro 99.2 1.9E-09 6.5E-14 100.1 19.5 205 97-304 38-267 (292)
97 3mv2_B Coatomer subunit epsilo 99.2 1.9E-08 6.5E-13 91.2 25.1 244 103-376 20-282 (310)
98 3qky_A Outer membrane assembly 99.2 1.7E-09 5.9E-14 98.6 18.6 82 491-574 152-249 (261)
99 4ga2_A E3 SUMO-protein ligase 99.1 3.6E-10 1.2E-14 93.0 11.7 145 38-222 4-149 (150)
100 3rjv_A Putative SEL1 repeat pr 99.1 7.2E-09 2.5E-13 90.9 20.6 176 114-307 4-198 (212)
101 2fo7_A Synthetic consensus TPR 99.1 3.4E-09 1.2E-13 85.2 16.8 130 419-551 3-132 (136)
102 2fo7_A Synthetic consensus TPR 99.1 5.3E-09 1.8E-13 84.1 17.5 129 98-235 3-131 (136)
103 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 92.8 13.2 162 98-269 8-171 (176)
104 3rjv_A Putative SEL1 repeat pr 99.1 1.5E-08 5.2E-13 88.8 20.7 173 366-552 5-198 (212)
105 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.3E-08 4.5E-13 90.3 20.4 187 95-307 3-214 (225)
106 2pzi_A Probable serine/threoni 99.1 2.3E-09 8E-14 111.8 17.8 173 323-502 402-583 (681)
107 3dra_A Protein farnesyltransfe 99.1 1.6E-07 5.3E-12 86.3 27.8 225 105-340 41-286 (306)
108 3dra_A Protein farnesyltransfe 99.1 2.6E-07 8.8E-12 84.8 28.6 217 294-515 50-286 (306)
109 3qou_A Protein YBBN; thioredox 99.1 7.5E-09 2.6E-13 95.6 18.7 162 414-581 114-279 (287)
110 3qou_A Protein YBBN; thioredox 99.1 5.6E-09 1.9E-13 96.5 16.9 166 129-304 115-282 (287)
111 2r5s_A Uncharacterized protein 99.0 5.7E-09 1.9E-13 88.6 15.4 154 423-580 12-167 (176)
112 2vsy_A XCC0866; transferase, g 99.0 6.4E-09 2.2E-13 106.6 18.6 154 44-237 2-158 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.7E-08 1.6E-12 86.7 21.2 187 130-342 3-214 (225)
114 4f3v_A ESX-1 secretion system 99.0 1.7E-08 5.9E-13 90.3 18.0 183 43-236 18-237 (282)
115 2vsy_A XCC0866; transferase, g 98.9 1.7E-08 5.7E-13 103.5 17.4 163 360-528 2-168 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.2E-13 93.3 16.6 204 43-269 3-222 (307)
117 3gyz_A Chaperone protein IPGC; 98.9 6E-09 2.1E-13 85.1 8.8 103 451-558 35-138 (151)
118 4gco_A Protein STI-1; structur 98.9 7.7E-08 2.6E-12 76.1 14.8 111 96-215 13-123 (126)
119 2ifu_A Gamma-SNAP; membrane fu 98.9 5.8E-08 2E-12 90.7 16.3 159 109-269 4-182 (307)
120 4f3v_A ESX-1 secretion system 98.9 1.2E-07 4.1E-12 84.8 17.2 140 419-563 104-247 (282)
121 4gco_A Protein STI-1; structur 98.9 7.8E-08 2.7E-12 76.1 14.4 109 453-566 14-124 (126)
122 3u3w_A Transcriptional activat 98.8 6.2E-07 2.1E-11 83.1 22.5 207 61-270 40-265 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.7E-07 5.9E-12 82.2 17.8 121 424-550 13-149 (213)
124 3q7a_A Farnesyltransferase alp 98.8 6.1E-06 2.1E-10 76.5 27.7 170 293-467 70-257 (349)
125 3q7a_A Farnesyltransferase alp 98.8 3.7E-06 1.3E-10 77.9 26.2 184 98-292 56-257 (349)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 79.9 19.1 136 97-237 7-151 (213)
127 3u3w_A Transcriptional activat 98.8 9E-07 3.1E-11 82.0 22.4 163 388-550 81-265 (293)
128 2e2e_A Formate-dependent nitri 98.8 7.4E-08 2.5E-12 81.7 13.8 127 37-196 16-145 (177)
129 1a17_A Serine/threonine protei 98.8 2.1E-07 7.2E-12 77.8 16.5 130 96-234 13-144 (166)
130 1a17_A Serine/threonine protei 98.8 2.2E-07 7.4E-12 77.7 16.3 128 418-549 14-144 (166)
131 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.5E-11 80.8 22.1 164 386-550 79-265 (293)
132 2lni_A Stress-induced-phosphop 98.8 2.8E-07 9.7E-12 73.6 15.2 120 93-221 13-132 (133)
133 2vyi_A SGTA protein; chaperone 98.8 1.7E-07 5.8E-12 74.6 13.7 120 451-573 11-130 (131)
134 3gyz_A Chaperone protein IPGC; 98.8 2E-07 6.9E-12 76.0 14.1 121 71-196 13-134 (151)
135 2e2e_A Formate-dependent nitri 98.7 8.5E-08 2.9E-12 81.3 11.9 119 429-551 22-144 (177)
136 2vgx_A Chaperone SYCD; alterna 98.7 6.6E-08 2.2E-12 79.0 10.6 107 440-550 10-117 (148)
137 1na0_A Designed protein CTPR3; 98.7 4.6E-07 1.6E-11 71.3 15.4 116 96-220 9-124 (125)
138 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.4E-11 80.3 21.4 167 349-515 77-265 (293)
139 2lni_A Stress-induced-phosphop 98.7 2.3E-07 7.7E-12 74.2 13.5 119 449-571 13-132 (133)
140 2vyi_A SGTA protein; chaperone 98.7 4.2E-07 1.4E-11 72.2 14.9 120 95-223 11-130 (131)
141 2c2l_A CHIP, carboxy terminus 98.7 5.8E-08 2E-12 89.3 11.0 95 313-409 5-99 (281)
142 2c2l_A CHIP, carboxy terminus 98.7 2.1E-07 7.3E-12 85.4 14.6 195 276-480 3-198 (281)
143 1na0_A Designed protein CTPR3; 98.7 6.9E-07 2.4E-11 70.2 15.7 116 452-570 9-124 (125)
144 2vgx_A Chaperone SYCD; alterna 98.7 1.1E-07 3.6E-12 77.8 10.3 97 131-235 21-117 (148)
145 3gw4_A Uncharacterized protein 98.7 2E-07 6.7E-12 81.0 12.5 156 394-550 4-175 (203)
146 1p5q_A FKBP52, FK506-binding p 98.7 5E-07 1.7E-11 85.3 15.9 132 95-234 146-292 (336)
147 4gcn_A Protein STI-1; structur 98.7 3.3E-07 1.1E-11 72.6 12.3 108 453-564 9-123 (127)
148 3dss_A Geranylgeranyl transfer 98.7 3.5E-05 1.2E-09 71.1 27.2 194 363-564 90-316 (331)
149 1p5q_A FKBP52, FK506-binding p 98.6 6.4E-07 2.2E-11 84.6 16.1 129 417-549 147-292 (336)
150 3gw4_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 79.4 13.4 161 143-305 4-175 (203)
151 3dss_A Geranylgeranyl transfer 98.6 2.8E-05 9.7E-10 71.7 26.4 246 254-529 41-316 (331)
152 3upv_A Heat shock protein STI1 98.6 8.3E-07 2.8E-11 70.2 13.5 96 452-550 4-100 (126)
153 4gcn_A Protein STI-1; structur 98.6 5.7E-07 2E-11 71.2 12.3 105 418-527 9-121 (127)
154 2xcb_A PCRH, regulatory protei 98.6 6.5E-07 2.2E-11 72.6 12.7 100 95-196 17-116 (142)
155 2dba_A Smooth muscle cell asso 98.6 1.7E-06 5.9E-11 70.5 15.4 115 450-568 26-144 (148)
156 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.5E-11 69.0 14.2 99 95-195 3-101 (126)
157 1elw_A TPR1-domain of HOP; HOP 98.6 1.8E-06 6.1E-11 67.0 14.8 111 452-566 4-115 (118)
158 2xcb_A PCRH, regulatory protei 98.6 1.6E-07 5.5E-12 76.2 8.7 96 452-550 18-114 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.6 2.3E-06 8E-11 66.3 15.1 112 95-215 3-114 (118)
160 1elr_A TPR2A-domain of HOP; HO 98.5 8.1E-07 2.8E-11 70.6 11.1 114 453-569 5-124 (131)
161 3q49_B STIP1 homology and U bo 98.5 2.3E-06 7.8E-11 68.7 13.5 102 93-196 6-107 (137)
162 3sz7_A HSC70 cochaperone (SGT) 98.5 2.7E-06 9.1E-11 70.9 14.3 95 453-550 12-107 (164)
163 1wao_1 Serine/threonine protei 98.5 2.2E-06 7.5E-11 85.1 16.0 122 36-190 11-134 (477)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 2.1E-06 7.3E-11 71.5 13.7 101 94-196 9-109 (164)
165 2fbn_A 70 kDa peptidylprolyl i 98.5 2.3E-06 7.9E-11 73.9 14.0 123 96-227 38-176 (198)
166 2fbn_A 70 kDa peptidylprolyl i 98.5 2E-06 6.7E-11 74.3 13.6 119 420-542 41-176 (198)
167 2dba_A Smooth muscle cell asso 98.5 5.7E-06 1.9E-10 67.3 15.3 113 94-216 26-142 (148)
168 3q49_B STIP1 homology and U bo 98.5 7E-06 2.4E-10 65.8 15.6 98 450-550 7-105 (137)
169 1elr_A TPR2A-domain of HOP; HO 98.4 2.3E-06 8E-11 67.8 11.8 112 418-532 5-122 (131)
170 1hxi_A PEX5, peroxisome target 98.4 1.7E-06 5.7E-11 67.7 10.3 93 455-550 20-113 (121)
171 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.3E-11 65.2 11.4 95 98-194 8-105 (112)
172 2kck_A TPR repeat; tetratricop 98.4 2.8E-06 9.5E-11 65.2 11.1 94 66-161 5-107 (112)
173 1hxi_A PEX5, peroxisome target 98.4 3.1E-06 1.1E-10 66.2 11.1 97 98-196 19-115 (121)
174 2xev_A YBGF; tetratricopeptide 98.4 9.6E-06 3.3E-10 64.1 13.6 92 457-551 7-105 (129)
175 4b4t_Q 26S proteasome regulato 98.3 2.1E-05 7E-10 77.4 18.2 203 101-304 9-243 (434)
176 2xev_A YBGF; tetratricopeptide 98.3 1.6E-05 5.3E-10 62.9 14.1 96 99-196 5-106 (129)
177 3ro3_A PINS homolog, G-protein 98.3 3E-06 1E-10 70.1 10.2 132 419-550 11-157 (164)
178 3rkv_A Putative peptidylprolyl 98.3 7.1E-06 2.4E-10 68.1 12.2 67 487-556 63-129 (162)
179 2hr2_A Hypothetical protein; a 98.3 6.3E-06 2.2E-10 66.3 11.0 92 456-550 15-130 (159)
180 4b4t_Q 26S proteasome regulato 98.3 4.8E-05 1.6E-09 74.8 19.8 198 283-480 10-244 (434)
181 3k9i_A BH0479 protein; putativ 98.3 2.2E-06 7.6E-11 66.6 8.1 86 465-551 3-90 (117)
182 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-05 4.1E-10 76.7 14.0 119 420-541 226-360 (370)
183 3k9i_A BH0479 protein; putativ 98.3 2.6E-06 8.8E-11 66.2 7.7 88 108-196 2-91 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-05 4.5E-10 79.1 14.6 133 95-235 267-414 (457)
185 1wao_1 Serine/threonine protei 98.2 2.8E-06 9.5E-11 84.3 9.7 145 426-574 15-183 (477)
186 3rkv_A Putative peptidylprolyl 98.2 1E-05 3.5E-10 67.1 11.8 100 96-196 11-127 (162)
187 3ro3_A PINS homolog, G-protein 98.2 7.1E-06 2.4E-10 67.8 10.7 139 96-235 9-157 (164)
188 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-05 4.5E-10 76.4 13.4 124 96-228 223-362 (370)
189 1dce_A Protein (RAB geranylger 98.2 0.00011 3.9E-09 74.1 20.5 132 363-498 45-189 (567)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.7E-05 5.7E-10 78.4 13.8 127 419-549 270-413 (457)
191 1dce_A Protein (RAB geranylger 98.1 0.00011 3.7E-09 74.3 19.0 174 396-575 43-244 (567)
192 1klx_A Cysteine rich protein B 98.1 7.4E-05 2.5E-09 59.7 13.9 111 431-552 9-127 (138)
193 2hr2_A Hypothetical protein; a 98.1 5.2E-05 1.8E-09 61.0 12.7 95 135-236 15-131 (159)
194 2l6j_A TPR repeat-containing p 98.1 1.5E-05 5.1E-10 61.0 9.4 92 486-580 3-101 (111)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 8.5E-06 2.9E-10 76.9 9.4 149 96-271 179-328 (338)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 7.5E-10 74.0 9.9 149 131-306 179-328 (338)
197 1klx_A Cysteine rich protein B 98.0 0.00016 5.4E-09 57.8 13.5 62 207-271 57-126 (138)
198 3n71_A Histone lysine methyltr 98.0 5.2E-05 1.8E-09 74.6 12.1 125 426-550 318-463 (490)
199 1zu2_A Mitochondrial import re 97.9 1.8E-05 6.2E-10 63.5 6.7 85 428-515 13-119 (158)
200 2l6j_A TPR repeat-containing p 97.9 9E-06 3.1E-10 62.2 4.8 97 94-192 2-104 (111)
201 1na3_A Designed protein CTPR2; 97.9 0.00013 4.3E-09 53.2 10.7 83 487-571 9-91 (91)
202 1zu2_A Mitochondrial import re 97.9 2.2E-05 7.6E-10 63.0 6.8 99 465-568 15-135 (158)
203 2kat_A Uncharacterized protein 97.9 7.5E-05 2.6E-09 57.5 9.0 78 470-550 3-81 (115)
204 3n71_A Histone lysine methyltr 97.8 0.00012 4.2E-09 72.0 11.9 131 175-305 318-463 (490)
205 3ma5_A Tetratricopeptide repea 97.8 9E-05 3.1E-09 55.3 8.5 86 486-572 6-92 (100)
206 1na3_A Designed protein CTPR2; 97.8 0.00022 7.4E-09 51.9 10.2 83 95-179 8-90 (91)
207 2kat_A Uncharacterized protein 97.8 0.00015 5.1E-09 55.8 9.7 81 113-195 2-82 (115)
208 3lvg_A Clathrin heavy chain 1; 97.6 2E-07 6.9E-12 87.2 -10.8 423 66-542 53-532 (624)
209 3ma5_A Tetratricopeptide repea 97.5 0.00048 1.7E-08 51.3 8.7 63 95-158 6-68 (100)
210 3ly7_A Transcriptional activat 97.5 0.0025 8.5E-08 59.0 14.4 75 484-562 274-348 (372)
211 3ly7_A Transcriptional activat 97.4 0.0014 4.8E-08 60.6 12.3 32 45-78 213-244 (372)
212 3qww_A SET and MYND domain-con 97.1 0.0018 6.3E-08 62.5 9.9 85 465-549 311-409 (433)
213 3u64_A Protein TP_0956; tetrat 97.1 0.11 3.7E-06 46.1 19.8 93 182-281 179-281 (301)
214 3bee_A Putative YFRE protein; 97.1 0.0055 1.9E-07 44.5 9.8 67 484-551 3-72 (93)
215 3qwp_A SET and MYND domain-con 97.0 0.0061 2.1E-07 59.0 12.6 89 461-549 296-398 (429)
216 3bee_A Putative YFRE protein; 97.0 0.0074 2.5E-07 43.8 9.6 68 93-161 3-73 (93)
217 3qww_A SET and MYND domain-con 96.9 0.0025 8.7E-08 61.5 9.0 93 178-270 310-410 (433)
218 2kc7_A BFR218_protein; tetratr 96.9 0.0068 2.3E-07 44.6 9.5 56 494-550 7-63 (99)
219 3qwp_A SET and MYND domain-con 96.9 0.0059 2E-07 59.1 11.4 99 172-270 293-399 (429)
220 1pc2_A Mitochondria fission pr 96.8 0.0087 3E-07 47.4 9.6 83 470-556 16-103 (152)
221 3mkq_B Coatomer subunit alpha; 96.7 0.18 6.1E-06 41.1 16.8 129 104-268 13-141 (177)
222 2kc7_A BFR218_protein; tetratr 96.7 0.017 5.7E-07 42.4 10.3 84 101-194 5-89 (99)
223 1pc2_A Mitochondria fission pr 96.7 0.013 4.4E-07 46.4 9.7 84 111-196 13-101 (152)
224 3mkq_A Coatomer beta'-subunit; 96.5 0.051 1.8E-06 58.0 16.5 41 528-573 755-799 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.027 9.2E-07 41.9 10.2 68 94-161 3-76 (104)
226 3mkq_B Coatomer subunit alpha; 96.5 0.15 5E-06 41.6 14.6 99 428-547 16-114 (177)
227 2v5f_A Prolyl 4-hydroxylase su 96.4 0.037 1.2E-06 41.1 10.3 68 129-196 3-76 (104)
228 4h7y_A Dual specificity protei 96.3 0.085 2.9E-06 41.2 11.8 101 94-196 11-124 (161)
229 3u64_A Protein TP_0956; tetrat 96.3 0.021 7.3E-07 50.5 9.5 80 434-516 180-269 (301)
230 3mkq_A Coatomer beta'-subunit; 96.1 0.32 1.1E-05 51.8 19.6 27 382-408 681-707 (814)
231 4h7y_A Dual specificity protei 95.9 0.13 4.5E-06 40.1 11.1 104 128-239 10-126 (161)
232 4ady_A RPN2, 26S proteasome re 95.7 2.6 8.8E-05 44.5 36.0 314 250-574 382-723 (963)
233 1nzn_A CGI-135 protein, fissio 95.7 0.046 1.6E-06 41.6 7.7 65 485-550 33-102 (126)
234 3lvg_A Clathrin heavy chain 1; 95.5 0.0076 2.6E-07 57.2 3.3 386 43-474 95-534 (624)
235 1nzn_A CGI-135 protein, fissio 95.3 0.14 4.6E-06 39.0 9.2 92 104-196 9-104 (126)
236 1wy6_A Hypothetical protein ST 94.6 1.1 3.9E-05 34.2 16.2 63 489-552 93-155 (172)
237 2ff4_A Probable regulatory pro 94.5 0.25 8.5E-06 47.0 10.9 79 490-569 174-257 (388)
238 1y8m_A FIS1; mitochondria, unk 93.2 1.5 5.2E-05 33.9 10.9 71 484-556 36-109 (144)
239 4ady_A RPN2, 26S proteasome re 93.2 10 0.00034 40.2 36.7 274 286-571 383-675 (963)
240 3o48_A Mitochondria fission 1 93.1 0.55 1.9E-05 35.8 8.3 71 484-556 37-110 (134)
241 2ff4_A Probable regulatory pro 93.0 1.6 5.3E-05 41.5 13.4 73 98-171 173-250 (388)
242 3ffl_A Anaphase-promoting comp 92.4 0.84 2.9E-05 36.5 8.8 98 99-196 23-152 (167)
243 4gns_B Protein CSD3, chitin bi 91.9 0.83 2.8E-05 47.1 10.4 127 99-234 251-398 (754)
244 4b4t_P 26S proteasome regulato 91.6 10 0.00035 36.6 18.9 50 291-340 30-84 (445)
245 4gns_B Protein CSD3, chitin bi 91.6 1.5 5E-05 45.3 11.9 52 519-572 610-661 (754)
246 1wy6_A Hypothetical protein ST 91.5 3.8 0.00013 31.4 17.3 141 106-274 17-157 (172)
247 2wpv_A GET4, UPF0363 protein Y 91.1 8.6 0.00029 34.7 19.1 90 141-230 63-157 (312)
248 4fhn_B Nucleoporin NUP120; pro 90.6 4.6 0.00016 44.7 15.6 147 423-576 818-990 (1139)
249 3ffl_A Anaphase-promoting comp 89.9 2 6.7E-05 34.4 8.6 62 134-195 23-92 (167)
250 1v54_E Cytochrome C oxidase po 89.8 3.6 0.00012 29.5 8.8 48 469-516 27-74 (109)
251 4fhn_B Nucleoporin NUP120; pro 89.5 12 0.00042 41.3 17.8 51 283-338 818-868 (1139)
252 3lpz_A GET4 (YOR164C homolog); 89.1 13 0.00045 33.9 19.1 117 99-230 38-159 (336)
253 1v54_E Cytochrome C oxidase po 89.0 4.9 0.00017 28.8 9.2 77 490-567 11-89 (109)
254 3o48_A Mitochondria fission 1 88.1 7.3 0.00025 29.7 10.8 71 126-196 35-108 (134)
255 4b4t_P 26S proteasome regulato 87.3 22 0.00074 34.3 21.8 193 110-305 30-246 (445)
256 1zbp_A Hypothetical protein VP 86.2 17 0.00057 31.8 15.3 54 106-160 7-60 (273)
257 2y69_E Cytochrome C oxidase su 85.8 8.2 0.00028 29.4 9.2 47 470-516 71-117 (152)
258 2y69_E Cytochrome C oxidase su 85.8 8.2 0.00028 29.4 9.2 62 505-567 71-132 (152)
259 1zbp_A Hypothetical protein VP 85.4 18 0.00062 31.6 14.2 112 426-550 6-128 (273)
260 3lpz_A GET4 (YOR164C homolog); 85.3 22 0.00074 32.4 21.5 81 449-549 133-214 (336)
261 1y8m_A FIS1; mitochondria, unk 84.9 12 0.00041 29.0 12.9 69 128-196 36-107 (144)
262 3esl_A Checkpoint serine/threo 84.4 16 0.00056 30.2 12.8 63 500-562 92-155 (202)
263 4b4t_R RPN7, 26S proteasome re 83.1 8.6 0.00029 36.9 11.0 100 97-196 132-238 (429)
264 3txn_A 26S proteasome regulato 82.6 32 0.0011 32.3 23.8 25 279-303 21-45 (394)
265 2wvi_A Mitotic checkpoint seri 79.0 23 0.00078 28.3 11.2 66 504-569 77-143 (164)
266 3ltm_A Alpha-REP4; protein eng 78.8 28 0.00094 29.1 18.6 140 416-571 63-202 (211)
267 2wpv_A GET4, UPF0363 protein Y 78.2 39 0.0013 30.5 21.3 27 450-476 132-158 (312)
268 4b4t_R RPN7, 26S proteasome re 77.8 18 0.0006 34.8 11.2 97 279-375 133-236 (429)
269 3txn_A 26S proteasome regulato 76.2 52 0.0018 30.9 24.0 92 247-338 104-207 (394)
270 4a1g_A Mitotic checkpoint seri 72.0 34 0.0012 26.9 12.2 62 504-565 82-144 (152)
271 3esl_A Checkpoint serine/threo 68.9 44 0.0015 27.7 9.7 56 325-380 92-148 (202)
272 1qsa_A Protein (soluble lytic 67.9 1.1E+02 0.0036 31.0 36.7 395 106-546 16-437 (618)
273 4aez_C MAD3, mitotic spindle c 66.8 57 0.002 27.5 10.2 62 504-565 131-193 (223)
274 4b4t_S RPN3, 26S proteasome re 59.6 1.1E+02 0.0036 29.9 11.9 66 131-196 231-300 (523)
275 1qsa_A Protein (soluble lytic 56.9 1.7E+02 0.0057 29.5 39.9 350 55-441 59-437 (618)
276 4a1g_A Mitotic checkpoint seri 52.3 84 0.0029 24.7 8.9 50 331-380 84-134 (152)
277 2uwj_G Type III export protein 50.0 68 0.0023 23.0 9.2 85 432-525 21-105 (115)
278 2p58_C Putative type III secre 48.8 72 0.0024 22.9 9.8 59 460-525 48-106 (116)
279 2ijq_A Hypothetical protein; s 46.2 57 0.002 25.9 6.5 61 41-125 42-104 (161)
280 2d2s_A Exocyst complex compone 45.8 1.4E+02 0.0049 25.5 9.7 89 138-235 25-119 (235)
281 2wvi_A Mitotic checkpoint seri 45.5 1.1E+02 0.0039 24.3 9.0 51 331-381 79-130 (164)
282 2ijq_A Hypothetical protein; s 40.5 1.4E+02 0.0047 23.8 8.1 51 109-159 45-103 (161)
283 2d2s_A Exocyst complex compone 39.6 1.4E+02 0.0048 25.5 8.5 90 101-193 23-118 (235)
284 2uwj_G Type III export protein 39.2 1E+02 0.0036 22.0 8.0 13 252-264 49-61 (115)
285 4gq2_M Nucleoporin NUP120; bet 38.8 3.1E+02 0.011 29.4 12.9 131 423-571 816-950 (950)
286 2p58_C Putative type III secre 38.0 1.1E+02 0.0038 22.0 8.8 14 252-265 50-63 (116)
287 2fe3_A Peroxide operon regulat 37.6 1.4E+02 0.0048 23.0 7.8 62 512-574 12-73 (145)
288 3bu8_A Telomeric repeat-bindin 36.9 1.7E+02 0.0059 24.4 7.9 49 147-196 88-144 (235)
289 3ltm_A Alpha-REP4; protein eng 36.6 1.8E+02 0.006 23.9 19.8 17 165-181 94-110 (211)
290 3ltj_A Alpharep-4; protein eng 36.5 1.7E+02 0.0059 23.7 20.2 139 416-570 58-196 (201)
291 3pvs_A Replication-associated 36.3 2.9E+02 0.01 26.4 14.3 29 240-270 192-220 (447)
292 3ltj_A Alpharep-4; protein eng 36.0 1.7E+02 0.006 23.7 20.2 81 94-182 26-106 (201)
293 1mzb_A Ferric uptake regulatio 35.2 1.5E+02 0.005 22.6 7.3 60 514-574 10-70 (136)
294 4gq2_M Nucleoporin NUP120; bet 35.1 2.2E+02 0.0076 30.6 11.1 52 458-514 816-867 (950)
295 4ets_A Ferric uptake regulatio 34.2 93 0.0032 24.7 6.2 70 113-183 14-86 (162)
296 2w57_A Ferric uptake regulatio 33.9 1.4E+02 0.0049 23.2 7.2 61 513-574 8-69 (150)
297 2cwy_A Hypothetical protein TT 33.6 67 0.0023 22.7 4.6 57 41-124 11-67 (94)
298 3mv2_A Coatomer subunit alpha; 33.0 2.7E+02 0.0094 25.1 17.5 41 20-60 17-57 (325)
299 4aez_C MAD3, mitotic spindle c 33.0 1.8E+02 0.0063 24.5 7.8 53 183-240 131-183 (223)
300 3eyy_A Putative iron uptake re 31.3 1.5E+02 0.0052 22.8 6.9 60 513-574 10-69 (145)
301 2fu4_A Ferric uptake regulatio 30.8 1.2E+02 0.0042 20.3 7.0 62 512-574 7-69 (83)
302 1bpo_A Protein (clathrin); cla 30.4 3.7E+02 0.013 25.8 11.2 32 411-442 355-386 (494)
303 3eiq_C Programmed cell death p 30.3 3.3E+02 0.011 25.1 12.0 27 209-235 56-82 (358)
304 3iqu_A 14-3-3 protein sigma; s 29.4 2.2E+02 0.0074 24.3 7.8 170 346-515 7-204 (236)
305 4ets_A Ferric uptake regulatio 29.2 1.2E+02 0.004 24.1 6.0 70 504-574 14-86 (162)
306 2o03_A Probable zinc uptake re 28.3 1.3E+02 0.0043 22.8 5.9 47 528-574 16-62 (131)
307 1oyz_A Hypothetical protein YI 27.8 3E+02 0.01 23.8 24.8 137 415-567 140-277 (280)
308 1wdy_A 2-5A-dependent ribonucl 27.5 2E+02 0.0067 24.8 8.1 19 102-120 8-26 (285)
309 3eyy_A Putative iron uptake re 26.7 1.9E+02 0.0066 22.3 6.7 58 123-182 11-68 (145)
310 2fe3_A Peroxide operon regulat 26.6 2.1E+02 0.0073 22.0 7.0 60 122-182 13-72 (145)
311 3mwm_A ZUR, putative metal upt 25.8 1.1E+02 0.0038 23.5 5.1 46 529-574 20-65 (139)
312 3pvs_A Replication-associated 25.4 4.5E+02 0.015 25.1 13.5 34 359-392 267-300 (447)
313 3eiq_C Programmed cell death p 25.0 4.1E+02 0.014 24.4 14.1 119 455-586 220-342 (358)
314 3bu8_A Telomeric repeat-bindin 24.9 3.1E+02 0.01 23.0 8.2 22 459-480 121-142 (235)
315 2o03_A Probable zinc uptake re 24.3 1.4E+02 0.0047 22.6 5.4 48 135-182 14-61 (131)
316 2xig_A Ferric uptake regulatio 24.3 2.5E+02 0.0086 21.8 7.9 60 122-182 18-77 (150)
317 1bpo_A Protein (clathrin); cla 23.4 5E+02 0.017 24.9 10.5 111 110-231 343-453 (494)
318 3bge_A Predicted ATPase; struc 23.2 3.1E+02 0.011 22.5 9.1 98 348-445 5-110 (201)
319 2xig_A Ferric uptake regulatio 23.1 2.7E+02 0.0091 21.6 8.2 62 512-574 17-78 (150)
320 2dod_A Transcription elongatio 22.9 1.3E+02 0.0044 20.6 4.3 36 538-574 16-52 (82)
321 2zu6_B Programmed cell death p 22.5 4.2E+02 0.014 23.7 9.7 58 210-269 6-65 (307)
322 3mwm_A ZUR, putative metal upt 22.2 1.2E+02 0.0042 23.2 4.7 48 135-182 17-64 (139)
323 2ion_A PDCD4, programmed cell 22.1 1.7E+02 0.0059 22.9 5.6 22 317-338 14-35 (152)
324 4b4t_S RPN3, 26S proteasome re 21.7 5.7E+02 0.019 25.0 13.5 65 96-160 231-299 (523)
325 2b7e_A PRE-mRNA processing pro 21.0 87 0.003 19.8 2.8 36 47-83 2-38 (59)
326 2f6m_A Suppressor protein STP2 20.4 1.7E+02 0.006 18.9 4.2 44 134-178 5-48 (65)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-41 Score=350.71 Aligned_cols=482 Identities=11% Similarity=0.008 Sum_probs=356.3
Q ss_pred CHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 040027 66 PVSSFNILLASLAKNKHYDT------RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIK 139 (595)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 139 (595)
++..|+.++..+.+.|++++ .+. +..|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 44555555555555555554 111 22345555555555555555555555555555433 445555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhc---------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccc
Q 040027 140 GLHAESRIMEAAALFTKLKAF---------------GCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCK 204 (595)
Q Consensus 140 ~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 204 (595)
+|.+.|++++|.++|+++... +.+.+..+|..++.+|.+.|++++|++.|+++.+.+ +
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p 231 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-------A 231 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence 555555555555555532111 111234555555555555555555555555555543 2
Q ss_pred CcHHHHHHHHHHHHHcCCHhHHH--HH-HHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 040027 205 PNTVTYSTIIDGLCKEGFVDKAK--AL-FLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFN 281 (595)
Q Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 281 (595)
.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 23444444443332222111111 11 222222222223334555567777889999999999998765 57899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Q 040027 282 VIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNK 361 (595)
Q Consensus 282 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (595)
.++..+.+.|++++|..+|+++.+.+. .+..++..++.++...|++++|..+++++.+.. +.+..++..++.+|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 999999999999999999999998753 377789999999999999999999999998764 567889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 362 EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFR 441 (595)
Q Consensus 362 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 441 (595)
++++|.++|+++.+.... +..+|..++..+.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999886433 67899999999999999999999999999874 5678899999999999999999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 442 TLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG----VLVPN--VVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999876 668999999999999999999999999999774 45777 78999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 040027 516 NAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLV 568 (595)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 568 (595)
.+ +.+..+|..++.+|...|++++|.++++++.+. .| +...+..+..+|.
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 75 568899999999999999999999999999985 45 6778877777654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-39 Score=336.36 Aligned_cols=479 Identities=11% Similarity=0.030 Sum_probs=402.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhH
Q 040027 90 TGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITY 169 (595)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 169 (595)
....+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... +++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 334468899999999999999999999999999965 568889999999999999999999999998654 6789999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCC
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNG---------EIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINP 240 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 240 (595)
..++.+|.+.|++++|+++|+++..... ......+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 232 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AK 232 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ch
Confidence 9999999999999999999995332210 0000123468899999999999999999999999998864 22
Q ss_pred CHhHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 241 DVVTYNSLIHGLCHANDWNEAK--RL-FIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNT 317 (595)
Q Consensus 241 ~~~~~~~ll~~~~~~~~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 317 (595)
+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..++..
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 5666666665554443332222 11 444444433344556666788889999999999999998875 578999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 040027 318 LMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ 397 (595)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 397 (595)
++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875 4577889999999999999999999999998764 3478899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 040027 398 VEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCS 477 (595)
Q Consensus 398 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (595)
+++|.++|+++.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..++..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998863 5678899999999999999999999999999876 66889999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 478 LPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN----AAAPD--VITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 478 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98742 336889999999999999999999999999886 55677 789999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccccchHHH
Q 040027 552 KVMPDASIVSIVVDLLVKNEISLKSLPSFL 581 (595)
Q Consensus 552 ~~~p~~~~~~~l~~~~~~~g~~~~~i~~~~ 581 (595)
+ +.+..+|..++.+|.+.|+++++++.+.
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4 4489999999999999999996655543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.4e-29 Score=244.12 Aligned_cols=376 Identities=14% Similarity=0.063 Sum_probs=167.4
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC
Q 040027 142 HAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG 221 (595)
Q Consensus 142 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 221 (595)
.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++.....+ |.+..+|..+..++.+.|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCC
Confidence 33344444444444433332 1123333333333444444444444444443332 233344444444444444
Q ss_pred CHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 040027 222 FVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLD 301 (595)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 301 (595)
++++|.+.|+++.... +.+...|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444443321 1123334444444444444444444444443321 1122233333444444444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 040027 302 LMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 381 (595)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (595)
++.+.. +.+..++..++.++...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++.....+. +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 444331 1133444444444444444555554444444432 223344444455555555555555555544443221 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 040027 382 VVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDG 461 (595)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (595)
..++..+...+...|++++|...++++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.+..++..++..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 3444444444555555555555555544432 2334445555555555555555555555555443 4445555555555
Q ss_pred HHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 040027 462 LCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRI 535 (595)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (595)
+...|++++|...++++.+. .| +..++..++.+|.+.|++++|+..|+++++.. +.+...+..+..++...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 55555555555555555542 22 24455555555555555555555555555432 22344444444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.5e-29 Score=245.42 Aligned_cols=383 Identities=13% Similarity=0.036 Sum_probs=338.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHG 251 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 251 (595)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..++..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 4567788999999999999998875 5667888889999999999999999999988764 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040027 252 LCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRA 331 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 331 (595)
+.+.|++++|...|+++.+.. +.+...+..++.++...|++++|...|+++.+.+. .+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999998853 33566799999999999999999999999998743 3556778889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 332 EELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
...|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.++. +...+..+...+...|++++|...+++..+.
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998874 556789999999999999999999999999987544 6778899999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH
Q 040027 412 GVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYN 491 (595)
Q Consensus 412 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 491 (595)
. +.+..++..+..++...|++++|...++++.+.. +.+..++..++.++.+.|++++|...|+++.+. .+.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHH
Confidence 3 5568889999999999999999999999999876 667889999999999999999999999999884 244688999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKN 570 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 570 (595)
.++..+...|++++|+..++++++.. +.+..++..++.+|.+.|++++|...++++.+. .| +...+..++.++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHc
Confidence 99999999999999999999999864 556889999999999999999999999999974 45 678899999988877
Q ss_pred Cc
Q 040027 571 EI 572 (595)
Q Consensus 571 g~ 572 (595)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-26 Score=232.46 Aligned_cols=442 Identities=9% Similarity=-0.050 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...+...+..+.+.|++++|+..|+++++.. |+..+|..+..++.+.|++++|++.++++.+.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788889999999999999999999884 688999999999999999999999999999875 4467889999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhc
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHA 255 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 255 (595)
+...|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+...+..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 999999999999999998875 3344444444444444333333333332222211111111111000000000
Q ss_pred CCHHHHHHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCC--------CC
Q 040027 256 NDWNEAKRLFIEMMDQGV---------QPSVVTFNVIMDELCK---NRKMDEASRLLDLMVQ-----RGV--------RP 310 (595)
Q Consensus 256 ~~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~ 310 (595)
........+...+..... +.+...+......+.. .|++++|...++++.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 011111111111111100 1123344444444444 7888888888888777 311 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 311 NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 390 (595)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 390 (595)
+..++..++..+...|++++|...++++.+.. |+...+..+..++...|++++|...++++...... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 34566777788888888888888888887764 33677788888888888888888888888776433 5667778888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHH
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKF 470 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 470 (595)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888888763 4456777778888888888888888888888765 5567788888888888888888
Q ss_pred HHHHHHhcccCCCCCC-------HHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 040027 471 AWELFCSLPHGVLVPN-------VVTYNIMIQGLCN---DGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 471 A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 540 (595)
|...++++... .|+ ...+..++.++.. .|++++|...++++.+.. +.+..++..++.+|...|++++
T Consensus 391 A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 391 ALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 88888887662 222 2377888888888 888888888888888864 5567788888888888888888
Q ss_pred HHHHHHHHHHCCCCCCH
Q 040027 541 VNELLHKMKEKKVMPDA 557 (595)
Q Consensus 541 A~~~~~~~~~~~~~p~~ 557 (595)
|...++++.+. .|+.
T Consensus 468 A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 468 AITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHh--cccc
Confidence 88888888874 3543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.9e-27 Score=236.25 Aligned_cols=185 Identities=16% Similarity=0.235 Sum_probs=107.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCcCHHHH
Q 040027 385 YNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNG---------YIIEAVELFRTLRILKCELDIQAY 455 (595)
Q Consensus 385 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~ 455 (595)
++.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+ .+++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444445555555555555555554445555555555554444332 245556666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 040027 456 NCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRI 535 (595)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (595)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666665666666666666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 536 NEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 536 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
|++++|.+++++|.+.|..|+..||..+++.|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666655554
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-26 Score=230.72 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 040027 350 YNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ---------VEHALKLFDEMQRDGVAADTRTY 420 (595)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 420 (595)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|.+.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45566666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCND 500 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 500 (595)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 040027 501 GQMDKARDLFLDMEENAAAPDVITFDMLIHGFIR 534 (595)
Q Consensus 501 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 534 (595)
|++++|.+++++|.+.+..|+..||..++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666665555543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.2e-25 Score=223.48 Aligned_cols=435 Identities=10% Similarity=0.002 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY 210 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (595)
...+......+.+.|++++|+..|+++.... |+..++..++.++...|++++|+..|+++.+.+ |.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHH
Confidence 4567778888999999999999999999874 689999999999999999999999999999875 5678899
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 040027 211 STIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKN 290 (595)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (595)
..++.++...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..........
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 999999999999999999999998875 3344555555555544444444444333322221112111111111111111
Q ss_pred CChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CC
Q 040027 291 RKMDEASRLLDLMVQRGV---------RPNACTYNTLMDGFCL---MGKINRAEELFGSMES-----MGC--------KH 345 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 345 (595)
........+...+..... +.+...+......+.. .|++++|...++++.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 111111111111111111 1224555555555555 8999999999999987 311 22
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 346 DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFID 425 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 425 (595)
+...+..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 3457888899999999999999999999987544 7888899999999999999999999999874 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDK 505 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 505 (595)
.+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999876 567889999999999999999999999999874 12356788999999999999999
Q ss_pred HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcccccc
Q 040027 506 ARDLFLDMEENAAA-PD----VITFDMLIHGFIR---INEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKSL 577 (595)
Q Consensus 506 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~i 577 (595)
|...++++.+.... ++ ...+..++.+|.. .|++++|...++++.+.. +.+..++..++.+|.+.|++++++
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999875311 11 3388899999999 999999999999999853 346889999999999999999655
Q ss_pred hHHH
Q 040027 578 PSFL 581 (595)
Q Consensus 578 ~~~~ 581 (595)
..+.
T Consensus 470 ~~~~ 473 (514)
T 2gw1_A 470 TLFE 473 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2.9e-24 Score=220.33 Aligned_cols=436 Identities=10% Similarity=0.019 Sum_probs=324.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
....|..++..+.+.|++++|+..|+++++.. +.++.+|..+..+|.+.|++++|++.|+++...+ +.+..++..++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35677888999999999999999999999885 5688899999999999999999999999999885 447888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC--CCCHhHHHHHHHHH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI--NPDVVTYNSLIHGL 252 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~ 252 (595)
++...|++++|+..|+ ..... |+ .....+..+...+...+|...++++..... .+........+..+
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH
Confidence 9999999999999996 44332 22 222234455566667889999988865410 00111112334445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHH--------hcCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 040027 253 CHANDWNEAKRLFIEMMDQGVQPSVV-TFNVIMDELC--------KNRKMDEASRLLDLMVQRGVRPN-------ACTYN 316 (595)
Q Consensus 253 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~ 316 (595)
....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 5566666665554332221 11211 2222222222 224788899999988876422 2 23466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 040027 317 TLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH 396 (595)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 396 (595)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|+..++++.+..+. +..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcC
Confidence 67778888999999999999998873 55778888999999999999999999998886543 6778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040027 397 QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFC 476 (595)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (595)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998864 4456788888999999999999999999998876 6677888999999999999999999999
Q ss_pred hcccCC-----CCCCHHHHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 477 SLPHGV-----LVPNVVTYNIMIQGLCND----------GQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 477 ~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
++.+.. .......+..+..++... |++++|+..|+++.+.. +.+..++..++.+|...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 987621 111222344556677777 99999999999999874 55678889999999999999999
Q ss_pred HHHHHHHHHCC
Q 040027 542 NELLHKMKEKK 552 (595)
Q Consensus 542 ~~~~~~~~~~~ 552 (595)
.+.++++.+..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999753
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4e-23 Score=206.73 Aligned_cols=316 Identities=12% Similarity=0.066 Sum_probs=157.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH
Q 040027 128 TPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT 207 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
+.+...+..++..+.+.|++++|+.+|+++.... +.+..++..++.++...|++++|+..|+++.+.+ +.+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~ 94 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------MDFT 94 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCcH
Confidence 3445556666666666666666666666666543 3356666666666666666666666666666654 3445
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCH---hHHHHHHH------------HHHhcCCHHHHHHHHHHHHHCC
Q 040027 208 VTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDV---VTYNSLIH------------GLCHANDWNEAKRLFIEMMDQG 272 (595)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~------------~~~~~~~~~~A~~~~~~~~~~~ 272 (595)
.++..++.+|...|++++|.+.|+++.... +.+. ..+..++. .+...|++++|+..|+++.+..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666542 1122 33333332 3444455555555555544431
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 040027 273 VQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNI 352 (595)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (595)
+.+...+..++.++...|++++|...|+++.+.. +.+..++..++.+|...|++++|+..|+++.+.. +.+...+..
T Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 250 (450)
T 2y4t_A 174 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAH 250 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHH
Confidence 1233444444444444444444444444444331 1233444444444444444444444444444331 112222221
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 040027 353 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAAD----TRTYTTFIDGLC 428 (595)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 428 (595)
+... . .......+...+...|++++|...++++.+.. +.+ ...+..+..++.
T Consensus 251 ~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~ 306 (450)
T 2y4t_A 251 YKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFS 306 (450)
T ss_dssp HHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHH
Confidence 1000 0 00001112444555555555555555555431 111 224445555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 429 KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+.|++++|...++++.+.. +.+..++..++.+|...|++++|...++++.+
T Consensus 307 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 307 KDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555443 33455555555555555555555555555555
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.2e-22 Score=203.21 Aligned_cols=371 Identities=11% Similarity=0.047 Sum_probs=292.5
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRL 264 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 264 (595)
+...+.++...+ |.+...+..++..+.+.|++++|..+|+++.... +.+...|..++.++...|++++|...
T Consensus 11 ~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 11 VDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344455555443 5678889999999999999999999999998763 44788999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcCCHH
Q 040027 265 FIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNA---CTYNTL------------MDGFCLMGKIN 329 (595)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~ 329 (595)
|+++++.+ +.+...+..++.++...|++++|...|+++.+.... +. ..+..+ +..+...|+++
T Consensus 83 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 83 LTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999864 336778999999999999999999999999986422 33 444444 45588999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 040027 330 RAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQ 409 (595)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 409 (595)
+|+..++++.+.. +.+...+..++.+|.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998874 56788899999999999999999999999987643 378899999999999999999999999998
Q ss_pred HCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCChHHHHH
Q 040027 410 RDGVAADTRTYTTF------------IDGLCKNGYIIEAVELFRTLRILKCELD----IQAYNCLIDGLCKSGRLKFAWE 473 (595)
Q Consensus 410 ~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 473 (595)
+.. +.+...+..+ +..+...|++++|...|+++.+.. +.+ ..++..++.++.+.|++++|+.
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 763 4455555444 788999999999999999999864 333 4478889999999999999999
Q ss_pred HHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHHcC----
Q 040027 474 LFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHG------------FIRIN---- 536 (595)
Q Consensus 474 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g---- 536 (595)
.++++... .| +...|..++.+|...|++++|...++++++.. +.+...+..+..+ |...|
T Consensus 317 ~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 317 VCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99998873 45 57899999999999999999999999999864 4456677766633 33444
Q ss_pred -ChhHHHHHHHH-HHHCCCCCC----H-------HHHHHHHHHHHhcCccc
Q 040027 537 -EPSKVNELLHK-MKEKKVMPD----A-------SIVSIVVDLLVKNEISL 574 (595)
Q Consensus 537 -~~~~A~~~~~~-~~~~~~~p~----~-------~~~~~l~~~~~~~g~~~ 574 (595)
+.+++.+.+++ ..+. .|| . ..+..+..+|..-|+.+
T Consensus 394 ~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp CCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred CCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 56778888887 4432 232 2 25666677776666654
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5e-23 Score=211.09 Aligned_cols=428 Identities=13% Similarity=0.053 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY 210 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (595)
...|..+...+.+.|++++|++.|+++.... +.+..++..++.+|...|++++|++.|+++...+ |.+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHH
Confidence 4567788889999999999999999999885 4478899999999999999999999999999876 5678899
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHH
Q 040027 211 STIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG--VQPSVVTFNVIMDELC 288 (595)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 288 (595)
..+..++...|++++|...|+.+ .. .|+. ....+..+...+....|...++.+.... ..+........+..+.
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 99999999999999999999744 32 1221 2223445556666788999998886531 0111111223344555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCH-------HHHHH
Q 040027 289 KNRKMDEASRLLDLMVQRGVRPNAC-TYNTLMDGFCL--------MGKINRAEELFGSMESMGCKHDD-------VSYNI 352 (595)
Q Consensus 289 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ 352 (595)
...+.+.+...+...... .+... ....+...+.. .|++++|..+++++.+.. +.+. .++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHH
Confidence 666666665554433222 22211 22233322222 257899999999998764 2332 24667
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040027 353 LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY 432 (595)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 432 (595)
+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 778889999999999999999986 4557888899999999999999999999999874 5678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040027 433 IIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFL 511 (595)
Q Consensus 433 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (595)
+++|...++++.+.. +.+...+..++.++...|++++|...++++.+. .| +...+..++..+...|++++|+..|+
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999876 566788999999999999999999999999884 34 46788999999999999999999999
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccccc
Q 040027 512 DMEENA-----AAPDVITFDMLIHGFIRI----------NEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISLKS 576 (595)
Q Consensus 512 ~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~~ 576 (595)
++.+.. .......+.....++... |++++|...++++.+.. +.+...+..++.+|.+.|+++++
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 998742 111223355566778888 99999999999999853 34689999999999999999955
Q ss_pred chHHH
Q 040027 577 LPSFL 581 (595)
Q Consensus 577 i~~~~ 581 (595)
+..+.
T Consensus 482 ~~~~~ 486 (537)
T 3fp2_A 482 IELFE 486 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=4.3e-19 Score=178.95 Aligned_cols=364 Identities=14% Similarity=0.043 Sum_probs=272.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCChhHHH
Q 040027 115 GFIAFGRILRSCFTPNAATFNSLIKGLHA----ESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR----TGHTMIAL 186 (595)
Q Consensus 115 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 186 (595)
++..+....+.| ++.++..+...|.. .+++++|+.+|++..+.| +...+..|...|.. .+++++|+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566655543 67777777777777 788888888888887764 56777778888877 78888888
Q ss_pred HHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCH
Q 040027 187 NLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH----ANDW 258 (595)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~ 258 (595)
+.|++....+ ++..+..|...|.. .+++++|..+|++..+.+ +...+..|...|.. .+++
T Consensus 100 ~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 100 IWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 8888887654 45667777777777 678888888888887765 56677777777776 6788
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 040027 259 NEAKRLFIEMMDQGVQPSVVTFNVIMDELCK----NRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCL----MGKINR 330 (595)
Q Consensus 259 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 330 (595)
++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888888887753 56677777777777 788888888888887764 45666777777775 678888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHH
Q 040027 331 AEELFGSMESMGCKHDDVSYNILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI-----HQVEHA 401 (595)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a 401 (595)
|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+...+... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 888888887653 45566677777777 788888888888887653 455666666666665 788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHH
Q 040027 402 LKLFDEMQRDGVAADTRTYTTFIDGLCKNG---YIIEAVELFRTLRILKCELDIQAYNCLIDGLCK----SGRLKFAWEL 474 (595)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 474 (595)
...+++..+.+ +...+..+...|...| ++++|..+|++..+.+ ++..+..+...|.. .+++++|...
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 88888887764 4456666677776655 6788888888888753 67777788888877 7888888888
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 040027 475 FCSLPHGVLVPNVVTYNIMIQGLCN----DGQMDKARDLFLDMEENA 517 (595)
Q Consensus 475 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (595)
|++..+.+ +...+..+...|.. .+++++|...|+++.+.+
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88887743 56677778888877 788888888888888765
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.1e-20 Score=180.72 Aligned_cols=331 Identities=10% Similarity=0.010 Sum_probs=221.5
Q ss_pred cHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 040027 206 NTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMD 285 (595)
Q Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 285 (595)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777777888888888888888777653 3356677777777888888888888887777652 225566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH
Q 040027 286 ELCKNRKMDEASRLLDLMVQRGVR--PNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV 363 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (595)
++...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777765320 12333332211100 01122234556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 364 EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTL 443 (595)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 443 (595)
++|+..++++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666655332 45566666666666667777776666666552 445666666666667777777777777766
Q ss_pred HHcCCCcCHHHHH------------HHHHHHHhcCChHHHHHHHHhcccCCCCCC-H----HHHHHHHHHHHhcCChhHH
Q 040027 444 RILKCELDIQAYN------------CLIDGLCKSGRLKFAWELFCSLPHGVLVPN-V----VTYNIMIQGLCNDGQMDKA 506 (595)
Q Consensus 444 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 506 (595)
.+.. +.+...+. .++..+...|++++|...++++.+. .|+ . ..+..+..++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6554 33333332 3366688889999999999888773 344 2 2345577888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 040027 507 RDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVK 569 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 569 (595)
+..++++.+.. +.+..++..++.+|...|++++|...++++.+. .| +...+..+..+...
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 99999998864 557888888999999999999999999999874 35 46667766666544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.9e-20 Score=177.12 Aligned_cols=331 Identities=9% Similarity=-0.023 Sum_probs=210.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
|+..+..++..+...|++++|+..|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999999875 5578899999999999999999999999999874 337788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcccc---CcHHHHHHH------------HHHHHHcCCHhHHHHHHHHHhhCCCC
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCK---PNTVTYSTI------------IDGLCKEGFVDKAKALFLQMKDENIN 239 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~ 239 (595)
.+...|++++|+..|+++.... + .+...+..+ ...+...|++++|.+.++++.+.. +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 9999999999999999999865 3 345555544 345555566666666655555442 2
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 240 PDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLM 319 (595)
Q Consensus 240 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 319 (595)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 229 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH
Confidence 244555555555555555555555555555432 224445555555555555555555555555543211 111111110
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcc
Q 040027 320 DGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTV----VTYNTLFLGLFEI 395 (595)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 395 (595)
.. . .......+...+...|++++|...++++.+.... +. ..+..+...+...
T Consensus 230 ~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 230 QV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHT
T ss_pred HH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHc
Confidence 00 0 0001112244566666666666666666654322 22 1233455566666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 040027 396 HQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC 463 (595)
Q Consensus 396 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (595)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+..
T Consensus 286 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 67777777766666642 4456666666666777777777777777766654 444555555555544
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=2e-18 Score=174.16 Aligned_cols=352 Identities=13% Similarity=0.048 Sum_probs=303.2
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCCH
Q 040027 95 NLYTYNILINCFCK----IGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHA----ESRIMEAAALFTKLKAFGCEPNV 166 (595)
Q Consensus 95 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 166 (595)
++..+..+...|.. .+++++|+..|+++.+.| ++.++..+...|.. .+++++|.++|++....| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 66677777777777 899999999999999875 67888889999998 899999999999999875 67
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCC
Q 040027 167 ITYNTLINGLCR----TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENI 238 (595)
Q Consensus 167 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 238 (595)
..+..|...|.. .+++++|+..|++....+ ++.++..+...|.. .+++++|.++|++..+.+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 788889999988 889999999999998764 57788888888887 789999999999998875
Q ss_pred CCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCC
Q 040027 239 NPDVVTYNSLIHGLCH----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK----NRKMDEASRLLDLMVQRGVRP 310 (595)
Q Consensus 239 ~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 310 (595)
+...+..|...|.. .+++++|..+|++..+.+ +...+..+...+.. .+++++|..+|++..+.+
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 78888889999988 899999999999998864 56677888888886 889999999999998864
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCC
Q 040027 311 NACTYNTLMDGFCL----MGKINRAEELFGSMESMGCKHDDVSYNILINGYCKN-----KEVEEALSLYREMVSKGIKPT 381 (595)
Q Consensus 311 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~ 381 (595)
+...+..+..+|.. .++.++|+..|++..+.+ +...+..+...|... +++++|+..|++..+.+ +
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 56677778888888 899999999999998764 566788888888887 89999999999999874 4
Q ss_pred HHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHH
Q 040027 382 VVTYNTLFLGLFEIH---QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK----NGYIIEAVELFRTLRILKCELDIQA 454 (595)
Q Consensus 382 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 454 (595)
...+..+...+...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 401 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAA 401 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHH
Confidence 567777777777656 7899999999999864 67788888888988 899999999999999865 6788
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhcccCC
Q 040027 455 YNCLIDGLCK----SGRLKFAWELFCSLPHGV 482 (595)
Q Consensus 455 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 482 (595)
+..+..+|.. .+++++|...|++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8899999998 899999999999999854
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=7.2e-19 Score=179.22 Aligned_cols=421 Identities=11% Similarity=0.042 Sum_probs=264.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
|...|..++. +.+.|++++|+.+|+++++.. |.+...|..++..+.+.|++++|.++|+++... .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5566666666 367899999999999999874 667889999999999999999999999999987 457778877775
Q ss_pred HH-HhcCChhHHHH----HHHHHHhcCCCCCccccCcHHHHHHHHHHHHH---------cCCHhHHHHHHHHHhhCCCCC
Q 040027 175 GL-CRTGHTMIALN----LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK---------EGFVDKAKALFLQMKDENINP 240 (595)
Q Consensus 175 ~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 240 (595)
.. ...|+.+.|.+ +|+.....-+. .+.+...|...+..... .|++++|..+|++........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 33 45678777765 77777654210 13456788887776655 688999999999998731111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH------HHCC---CCCC
Q 040027 241 DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLM------VQRG---VRPN 311 (595)
Q Consensus 241 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~---~~~~ 311 (595)
....|..........|. ..+..++ . ...+++..|..++..+ .+.. ++|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l----~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMI----E-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHH----H-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHH----H-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 12333322221111110 0000000 0 0122334444444331 1111 1222
Q ss_pred --------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------CCCHH----
Q 040027 312 --------ACTYNTLMDGFCLM----GKI----NRAEELFGSMESMGCKHDDVSYNILINGYCK-------NKEVE---- 364 (595)
Q Consensus 312 --------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~---- 364 (595)
...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12333333222211 222 35666777766652 4556677777766664 57765
Q ss_pred ---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 040027 365 ---EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADT-RTYTTFIDGLCKNGYIIEAVELF 440 (595)
Q Consensus 365 ---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 440 (595)
+|..+|++.++.-.+.+...|..++..+...|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|..+|
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777752123356677777777777788888888888777752 2232 46777777777778888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-
Q 040027 441 RTLRILKCELDIQAYNCLIDG-LCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENA- 517 (595)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 517 (595)
+++.+.. +.+...+...+.. +...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++++..+
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 8877653 2333333332222 33578888888888877763 34 46777777877778888888888888887753
Q ss_pred CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 518 AAPD--VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 518 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
..|+ ...|...+......|+.+.+.++.+++.+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 34666667777777888888888888775
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.7e-20 Score=174.21 Aligned_cols=292 Identities=9% Similarity=-0.059 Sum_probs=186.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040027 276 SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILIN 355 (595)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (595)
+...+..++..+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44445555555555566666666666655542 2233344445555556666666666666665543 334455566666
Q ss_pred HHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040027 356 GYCKNK-EVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYII 434 (595)
Q Consensus 356 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 434 (595)
.+...| ++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 666666666666654322 44556666666666666666666666666542 333455555666667777777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCC--------CCCCHHHHHHHHHHHHhcCChhHH
Q 040027 435 EAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGV--------LVPNVVTYNIMIQGLCNDGQMDKA 506 (595)
Q Consensus 435 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 506 (595)
+|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+.+..++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776654 4556677777777777777777777777665421 122356778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCccc
Q 040027 507 RDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL-VKNEISL 574 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 574 (595)
+..++++.+.. +.+...+..++.+|...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 88888888764 4466778888888888888888888888887643 23677788888877 4566554
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=2.1e-18 Score=175.74 Aligned_cols=428 Identities=9% Similarity=0.004 Sum_probs=302.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040027 119 FGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGE 198 (595)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (595)
+++.++.. |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555553 558889999998 478899999999999999873 5578889999999999999999999999999864
Q ss_pred CCccccCcHHHHHHHHHHH-HHcCCHhHHHH----HHHHHhhC-CCC-CCHhHHHHHHHHHHh---------cCCHHHHH
Q 040027 199 IGVVCKPNTVTYSTIIDGL-CKEGFVDKAKA----LFLQMKDE-NIN-PDVVTYNSLIHGLCH---------ANDWNEAK 262 (595)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~~~~A~ 262 (595)
|+...|...+... ...|+.+.|.+ +|++.... |.. ++...|...+..... .|+++.|.
T Consensus 77 ------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 77 ------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 5777787777533 45677777665 77766543 433 356677777776654 67889999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----
Q 040027 263 RLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSM---- 338 (595)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 338 (595)
.+|++.++.........|..........|. ..+.. ++. ...++++.|..++..+
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~ 208 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVM 208 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHH
Confidence 999988873111111222222211111110 00111 110 1234566666666552
Q ss_pred --HhcC---CCCC--------HHHHHHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 040027 339 --ESMG---CKHD--------DVSYNILINGYCKN----KEV----EEALSLYREMVSKGIKPTVVTYNTLFLGLFE--- 394 (595)
Q Consensus 339 --~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 394 (595)
.+.. ++|+ ...|...+...... ++. +.+..+|++++...+ .+...|..++..+..
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~ 287 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSK 287 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhch
Confidence 2211 2333 24566555443332 232 478889999988633 367888888887775
Q ss_pred ----cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHH
Q 040027 395 ----IHQVE-------HALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDI-QAYNCLIDGL 462 (595)
Q Consensus 395 ----~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 462 (595)
.|+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+
T Consensus 288 ~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 288 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFA 366 (530)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHH
T ss_pred hhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHH
Confidence 68876 999999999973235678899999999999999999999999999864 3343 5899999999
Q ss_pred HhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQG-LCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 540 (595)
.+.|++++|..+|+++.+. .|+ ...|...+.. +...|++++|..+|+++++.. +.+...|..++..+.+.|+.++
T Consensus 367 ~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 9999999999999999884 343 3344333322 346899999999999999874 5568899999999999999999
Q ss_pred HHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCccc-------ccchHHHHhh
Q 040027 541 VNELLHKMKEKK-VMPD--ASIVSIVVDLLVKNEISL-------KSLPSFLVQE 584 (595)
Q Consensus 541 A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~-------~~i~~~~~~~ 584 (595)
|..+|++++..+ ..|+ ...|..++....+.|+.+ ++++.+|.+.
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 999999999863 2332 458999999999999888 4445555443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.3e-19 Score=170.13 Aligned_cols=298 Identities=12% Similarity=0.002 Sum_probs=141.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhH
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVT 244 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 244 (595)
+...+..++..+...|++++|+++|+++.... +.+...+..++.++...|++++|..+++++.+.. +.+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 33444444444555555555555555554443 2333344444444455555555555555544432 123444
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 245 YNSLIHGLCHAN-DWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFC 323 (595)
Q Consensus 245 ~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (595)
|..+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 170 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 444444455555 4555555555444432 112334444444444444444444444444443211 2233333444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 040027 324 LMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALK 403 (595)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 403 (595)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...... +
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~------ 228 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG---------------N------ 228 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------C------
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------c------
Confidence 4444444444444444432 22333444444444444444444444444433100000 0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 040027 404 LFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL 483 (595)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 483 (595)
....+....++..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+ +
T Consensus 229 ------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~ 299 (330)
T 3hym_B 229 ------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--L 299 (330)
T ss_dssp ------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--T
T ss_pred ------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--c
Confidence 00012234555666666666666666666666666554 44556666666666677777777777776665 3
Q ss_pred CC-CHHHHHHHHHHH-HhcCCh
Q 040027 484 VP-NVVTYNIMIQGL-CNDGQM 503 (595)
Q Consensus 484 ~p-~~~~~~~l~~~~-~~~g~~ 503 (595)
.| +...+..+..++ ...|+.
T Consensus 300 ~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 300 RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CSCCHHHHHHHHHHHHTTTTC-
T ss_pred CCCchHHHHHHHHHHHHHhCch
Confidence 34 355555666555 344443
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.3e-16 Score=168.01 Aligned_cols=465 Identities=11% Similarity=0.062 Sum_probs=287.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCC------------CCHHH----------HH
Q 040027 43 NVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLF------------PNLYT----------YN 100 (595)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~----------~~ 100 (595)
++++++--...++.-+..+-. ++.++|+++..|...++-.++......- .||.. -.
T Consensus 851 krnrLkll~p~LE~~~~~g~~--~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~ 928 (1630)
T 1xi4_A 851 KRNRLKLLLPWLEARIHEGCE--EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDL 928 (1630)
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcH
Confidence 445566666667777777665 9999999999999988877632222111 12211 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--------------------------------HHHHHHHhcCCHh
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFN--------------------------------SLIKGLHAESRIM 148 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------------------------~l~~~~~~~g~~~ 148 (595)
.|++.+.+.|-+....+ .+++ ..|...|. ..+.+|...|.+.
T Consensus 929 eli~vt~~n~l~k~~ar---ylv~---r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A 929 ELINVCNENSLFKSLSR---YLVR---RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred HHHHHHhcchhHHHHHH---HHHH---hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence 23333333333322111 1111 12333343 3444555555555
Q ss_pred HHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHH
Q 040027 149 EAAALFTKLKAFGC--EPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKA 226 (595)
Q Consensus 149 ~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (595)
+|+++++++...+- .-+...-+.++.+..+. +..+..+..++...- + ...+...+...|.+++|
T Consensus 1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----------d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----------D---APDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----------c---HHHHHHHHHhCCCHHHH
Confidence 55555555552210 01223333344443333 333333333333211 0 12245566667777777
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 227 KALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
..+|++... .....+.++ ...+++++|.++.++. -+..+|..+..++...|++++|.+.|.+.
T Consensus 1069 f~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1069 FAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 777776521 122222222 2556777777776644 24667778888888888888888887653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040027 307 GVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYN 386 (595)
Q Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 386 (595)
.|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|.+.+++++.... +. .++...+.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQ 1199 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHH
Confidence 266677777888888888888888887776653 3333344577778887777743322 22 23556666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 040027 387 TLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSG 466 (595)
Q Consensus 387 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 466 (595)
.+...|...|++++|...|..+ ..|..++.+|.+.|++++|.+.++++ .+..+|..+..+|...|
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 7778888888888888888774 36777788888888888888888776 25677888888888888
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CChhHHHHH
Q 040027 467 RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRI--NEPSKVNEL 544 (595)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~ 544 (595)
++..|......+. .++..+..++..|.+.|.+++|+.+++..+... +-....|.-+...|.+. ++..++.++
T Consensus 1265 Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888877765433 356677788889999999999999998888764 44455666666666653 455566666
Q ss_pred HHHHHHCCCCC------CHHHHHHHHHHHHhcCcccccchHHH
Q 040027 545 LHKMKEKKVMP------DASIVSIVVDLLVKNEISLKSLPSFL 581 (595)
Q Consensus 545 ~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~~i~~~~ 581 (595)
|..-. +++| +...|..++..|.+.|.+++++..|-
T Consensus 1339 f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1339 FWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 65443 3444 57889999999999999997775553
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=5.2e-19 Score=171.69 Aligned_cols=263 Identities=11% Similarity=-0.002 Sum_probs=153.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 040027 278 VTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGY 357 (595)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (595)
..+..+...+...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555556666666666666655542 2244555555666666666666666666655543 33455566666666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHH
Q 040027 358 CKNKEVEEALSLYREMVSKGIKPTVVTYNT---------------LFLGLFEIHQVEHALKLFDEMQRDGVAA--DTRTY 420 (595)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 420 (595)
...|++++|+..++++....+. +...+.. .+..+...|++++|...++++.+.. +. +..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHH
Confidence 6666666666666666554322 1111110 1222225666667777766666542 22 45666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHh
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCN 499 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 499 (595)
..+...+...|++++|...++++.... +.+..++..++.++...|++++|+..|+++.+. .| +...+..++.+|..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 666666666777777777777666654 445666666666666777777777777666652 33 35566666666667
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 500 DGQMDKARDLFLDMEENAAAPD-----------VITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
.|++++|...|+++++.. +.+ ..+|..++.+|...|++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 777777777776666532 111 456666666666777776666665533
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=2.2e-16 Score=166.22 Aligned_cols=397 Identities=14% Similarity=0.114 Sum_probs=281.6
Q ss_pred ccccCCCChHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCCch--hHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 040027 39 EGDINVITPNEAFCIFDYMLRMHPS--PPPVSSFNILLASLAKNKHYD--TRLNATGLFPNLYTYNILINCFCKIGRVSL 114 (595)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 114 (595)
-+|+.+|.+.+|+++|++++.. |+ .-+...-+.++....+..... +...... ......++..+...|.+++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD----NYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHH
Confidence 3456789999999999999833 33 124556666666666553211 1111111 1223447788888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040027 115 GFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 115 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 194 (595)
|..+|++... .....+.++ ...+++++|.++.++.. ++.+|..+..++...|++++|+..|.+.
T Consensus 1068 Af~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1068 AFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 9999998631 222223332 26788999999888652 5788999999999999999999998664
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040027 195 GNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ 274 (595)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 274 (595)
.+...|..++.++.+.|++++|.+.|...++.. +++...+.++.+|.+.+++++...+ ++ .
T Consensus 1132 ----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~ 1192 (1630)
T 1xi4_A 1132 ----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---G 1192 (1630)
T ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---C
Confidence 357788889999999999999999998877754 3333344588889998888853333 22 2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 040027 275 PSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILI 354 (595)
Q Consensus 275 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (595)
++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 46667778899999999999999999885 36888899999999999999998876 3567888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CC
Q 040027 355 NGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKN--GY 432 (595)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~ 432 (595)
.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +.....++.+...|.+. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 89999999988888766432 266677788888999999999999998887654 44455666666666653 34
Q ss_pred HHHHHHHHHHHHHcCCC------cCHHHHHHHHHHHHhcCChHHHHHHHH-------------hcccCCCCCCHHHHHHH
Q 040027 433 IIEAVELFRTLRILKCE------LDIQAYNCLIDGLCKSGRLKFAWELFC-------------SLPHGVLVPNVVTYNIM 493 (595)
Q Consensus 433 ~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------~~~~~~~~p~~~~~~~l 493 (595)
..++.+.|..-. +++ .+...|..++..|.+.|+++.|....- ..+. -..|+..|...
T Consensus 1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyyka 1407 (1630)
T 1xi4_A 1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHH
Confidence 444455544332 222 256778889999999999998883322 2222 13467777777
Q ss_pred HHHHHhc
Q 040027 494 IQGLCND 500 (595)
Q Consensus 494 ~~~~~~~ 500 (595)
+..|...
T Consensus 1408 i~Fyl~~ 1414 (1630)
T 1xi4_A 1408 IQFYLEF 1414 (1630)
T ss_pred HHHHHhh
Confidence 7777743
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=6.7e-19 Score=170.89 Aligned_cols=305 Identities=12% Similarity=-0.035 Sum_probs=192.7
Q ss_pred hcCCHhHHHH-HHHHHHhcCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHH
Q 040027 143 AESRIMEAAA-LFTKLKAFGCE---PNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLC 218 (595)
Q Consensus 143 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (595)
..|++++|++ .|++....... .+...+..++..+...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQA 109 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 3467777777 77765544211 124557777778888888888888888887764 456777778888888
Q ss_pred HcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 040027 219 KEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASR 298 (595)
Q Consensus 219 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 298 (595)
..|++++|.+.|+++.+.. +.+..++..++..+...|++++|...++++...... +...+..+... ..
T Consensus 110 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~--- 177 (368)
T 1fch_A 110 ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG--- 177 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------
T ss_pred HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh---
Confidence 8888888888888877654 336677777778888888888888888887775322 22222111000 00
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 040027 299 LLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKH--DDVSYNILINGYCKNKEVEEALSLYREMVSK 376 (595)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (595)
. ..+ ...+..+...+ ..|++++|...++++.+.. +. +..++..+..+|...|++++|+..++++...
T Consensus 178 ----~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 178 ----G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 000 00111222223 6677777777777776653 22 3566777777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-----
Q 040027 377 GIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELD----- 451 (595)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 451 (595)
.+. +...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +.+
T Consensus 247 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 323 (368)
T 1fch_A 247 RPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRG 323 (368)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC-----
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccc
Confidence 322 45667777777777777777777777777653 4556777777777888888888888887776543 222
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 452 ------IQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 452 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
..+|..+..++...|++++|..++.+..+
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 67788888888888888888888776543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.7e-17 Score=165.43 Aligned_cols=371 Identities=11% Similarity=-0.069 Sum_probs=238.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--ccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----C
Q 040027 165 NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIG--VVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----N 237 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 237 (595)
....|+.+...+...|++++|++.|++..+...... ...+....+|..+..+|...|++++|...++++... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 355678888888888888888888887764210000 001334678999999999999999999999887642 1
Q ss_pred --CCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCC
Q 040027 238 --INPDVVTYNSLIHGLCH--ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDE---LCKNRKMDEASRLLDLMVQRGVRP 310 (595)
Q Consensus 238 --~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~ 310 (595)
......++..+..++.. .+++++|+..|++.++... .+...+..+..+ +...++.++|++.+++.++.+ +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11234566666656555 4579999999999988532 244555554444 445678889999999988864 23
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040027 311 NACTYNTLMDGFCL----MGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYN 386 (595)
Q Consensus 311 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 386 (595)
+..++..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|+..++++.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 55566666555544 467889999999988775 567778999999999999999999999999987443 556666
Q ss_pred HHHHHHHcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040027 387 TLFLGLFEI-------------------HQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILK 447 (595)
Q Consensus 387 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 447 (595)
.+...|... +..+.|...++...+.+ +.+...+..+...|...|++++|...|+++++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 665554321 23456666666666543 3444556677777888888888888888877654
Q ss_pred CCcCH--HHHHHHHH-HHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 040027 448 CELDI--QAYNCLID-GLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVIT 524 (595)
Q Consensus 448 ~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 524 (595)
..+.. ..+..+.. .....|++++|+..|++.+. +.|+....... ...+.+++++.++.+ +.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHH
Confidence 22221 12223332 23456778888888888776 45554332222 233455566666654 556677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 525 FDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 525 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
|..++.+|...|++++|.+.|+++++.+
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888754
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=5.5e-19 Score=171.29 Aligned_cols=265 Identities=12% Similarity=0.008 Sum_probs=168.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 040027 277 VVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILING 356 (595)
Q Consensus 277 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (595)
...+..++..+.+.|++++|..+|+++.+.. +.+..++..++.++...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456777777777778888888877777753 3356677777777888888888888888777664 4456677777788
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 040027 357 YCKNKEVEEALSLYREMVSKGIKP---------TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAA--DTRTYTTFID 425 (595)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 425 (595)
|...|++++|+..++++.+..+.. ....+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 888888888888887777642110 01122334556666777777777777766653 22 4666666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChh
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMD 504 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 504 (595)
.|...|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+++.+. .|+ ..++..++.+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777776654 455666777777777777777777777766652 333 566666667777777777
Q ss_pred HHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040027 505 KARDLFLDMEENAAA-----------PDVITFDMLIHGFIRINEPSKVNELLHK 547 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (595)
+|...|+++++.... .+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 777777766653100 0235566666666666766666655544
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.5e-17 Score=163.13 Aligned_cols=384 Identities=10% Similarity=-0.081 Sum_probs=227.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-----
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRS--------CFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG----- 161 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 161 (595)
....|+.+..++...|++++|+..|+++++. ..+....+|+.+...|...|++++|...++++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888888899999999999999887653 113345678888899999999999999888876531
Q ss_pred --CCCCHhhHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHH---HHcCCHhHHHHHHHHHh
Q 040027 162 --CEPNVITYNTLINGLCR--TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGL---CKEGFVDKAKALFLQMK 234 (595)
Q Consensus 162 --~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 234 (595)
......++.....++.. .+++++|++.|+++...+ |.++..+..+..++ ...++.++|++.+++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 01134556655555554 456889999999988875 44566666655553 34577788888888877
Q ss_pred hCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040027 235 DENINPDVVTYNSLIHGLCH----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRP 310 (595)
Q Consensus 235 ~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 310 (595)
+.+ +.+...+..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 753 2355566655554443 467788888888887753 3356778888888999999999999999888763 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 311 NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFL 390 (595)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 390 (595)
+..++..+..+|...+.... ... ...........+.++.|...+++..+..+. +...+..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHH
Confidence 56666666666543211100 000 000000011122345667777766665332 4455666677
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGVAADTR--TYTTFID-GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (595)
.+...|++++|...|++.++....+... .+..+.. .+...|++++|+..|++.++.. |+..... +.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KM 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HH
Confidence 7777777777777777776653222111 1222222 2345677777777777777653 2222111 11
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 040027 468 LKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENA 517 (595)
Q Consensus 468 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (595)
...+..++++.+.. -+.+..+|..++.+|...|++++|++.|+++++.+
T Consensus 412 ~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23334445544442 12346777888888888888888888888887754
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=4.8e-18 Score=164.64 Aligned_cols=267 Identities=12% Similarity=0.007 Sum_probs=190.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.+...|..++..+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|++.|+++.... +.+..++..++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668899999999999999999999999885 5678899999999999999999999999999875 44688999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH----------HHHHHHHHHcCCHhHHHHHHHHHhhCCCC-CCH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY----------STIIDGLCKEGFVDKAKALFLQMKDENIN-PDV 242 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 242 (595)
..|...|++++|+..|+++.... +.+...+ ..+...+...|++++|.+.|+++...... .+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 99999999999999999998865 2223333 23466777778888888888877765321 146
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 243 VTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 243 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
.++..++..+...|++++|...|+++++.. +.+..++..++.++...|++++|...|+++.+.. +.+..++..++.+|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 677777777777788888888777777652 2356667777777777777777777777776653 22466666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 040027 323 CLMGKINRAEELFGSMESMGCK-----------HDDVSYNILINGYCKNKEVEEALSLYR 371 (595)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 371 (595)
...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777777777776554200 013445555555555555555554443
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.5e-18 Score=161.47 Aligned_cols=284 Identities=11% Similarity=0.094 Sum_probs=123.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 040027 108 KIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALN 187 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 187 (595)
+.|++++|...++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678888888888872 3358888999999999999999888653 466788888888888999999998
Q ss_pred HHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 188 LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIE 267 (595)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 267 (595)
.++...+.. +++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..
T Consensus 83 yl~~ark~~--------~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 83 YLQMARKKA--------RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHhC--------ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777776632 446777888889999999888887774 25667888899999999999999999886
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 040027 268 MMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDD 347 (595)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (595)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCH
Confidence 5 36888888999999999999988887 267888888899999999998865554422 334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC------CHHHH
Q 040027 348 VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD-GVAA------DTRTY 420 (595)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~ 420 (595)
.....++..|.+.|++++|+.+++..+... +-....|+.+...+++- ++++..+.++..... +++| +...|
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445568888888999999999988887664 33556677766666553 344444444433322 2222 34567
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 040027 421 TTFIDGLCKNGYIIEAVELF 440 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~ 440 (595)
..+...|...++++.|....
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHH
Confidence 77777888888888776643
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.2e-17 Score=158.95 Aligned_cols=263 Identities=13% Similarity=-0.024 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 040027 280 FNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCK 359 (595)
Q Consensus 280 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (595)
+......+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444555555555555555554432 1234444455555555555555555555555442 3344455555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 360 NKEVEEALSLYREMVSKGIKPTVVTYNTL--------------FL-GLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFI 424 (595)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 424 (595)
.|++++|...++++...... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 55555555555555544221 11111111 11 2566677777777777777653 44667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCCh
Q 040027 425 DGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 425 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 503 (595)
..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+. .| +...+..++.+|...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 77777777777777777777665 556677777777777777777777777777663 33 456777777777777777
Q ss_pred hHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAP-----------DVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
++|.+.++++.+..... +...+..+..++...|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777653111 35667777777777777777777766543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.9e-17 Score=151.58 Aligned_cols=252 Identities=9% Similarity=0.045 Sum_probs=145.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHH
Q 040027 286 ELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEE 365 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (595)
-....|++..|+..++.+..............+.++|...|+++.|+..++.. .+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34455666666666655433211111223344556666666666666544331 23445556666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 366 ALSLYREMVSKGIKP-TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLR 444 (595)
Q Consensus 366 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 444 (595)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666554323 344445555666666666666666655 3455666666666666777777777776666
Q ss_pred HcCCCcCHHH--HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 040027 445 ILKCELDIQA--YNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV 522 (595)
Q Consensus 445 ~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 522 (595)
+.. +.+... ...++..+...|++++|..+|+++.+. .+.+...|+.++.++.+.|++++|+..|+++++.. +.+.
T Consensus 158 ~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 158 DQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 553 222111 112223333446677777777776664 23356666667777777777777777777776654 4456
Q ss_pred HHHHHHHHHHHHcCChhH-HHHHHHHHHH
Q 040027 523 ITFDMLIHGFIRINEPSK-VNELLHKMKE 550 (595)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 550 (595)
.++..++.++...|+.++ +.++++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666666777776654 4566666665
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.8e-18 Score=163.51 Aligned_cols=374 Identities=13% Similarity=0.094 Sum_probs=187.5
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC
Q 040027 142 HAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG 221 (595)
Q Consensus 142 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 221 (595)
.+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCC
Confidence 35688999999999983 3359999999999999999999999653 45678999999999999
Q ss_pred CHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 040027 222 FVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLD 301 (595)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 301 (595)
++++|+.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 4467888999999999999999988884 3677799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 040027 302 LMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 381 (595)
Q Consensus 302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (595)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 36889999999999999999999988 268899999999999999999966655432 24
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCc------CHHH
Q 040027 382 VVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRI-LKCEL------DIQA 454 (595)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~~ 454 (595)
+.....++..|.+.|+++++..+++..+... +....+|+.+.-+|++- ++++..+.++...+ .++++ +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4445678889999999999999999998775 66677888887777764 35555544443332 23333 4667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCC-----------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGV-----------LVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVI 523 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 523 (595)
|..++..|...++++.|....-+-.... -..|...|...+..|. +....++.-+...+.. ..|.
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~--~ld~- 359 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP--RLDH- 359 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG--GCCH-
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh--ccCc-
Confidence 8899999999999998877544332110 1235666666666666 2223333333333322 1222
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 524 TFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
...+..+.+.|+..-+..+++.+...+ +..+-.++-+.|....+++
T Consensus 360 --~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~ 405 (449)
T 1b89_A 360 --TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQ 405 (449)
T ss_dssp --HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHH
Confidence 345556678888888888887777543 5677777777888777776
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.5e-17 Score=156.85 Aligned_cols=278 Identities=8% Similarity=-0.064 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 040027 207 TVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDE 286 (595)
Q Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (595)
...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456667777777788888888887777653 2356677777777777777777777777777652 2355666677777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhCCCHH
Q 040027 287 LCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNIL-IN-GYCKNKEVE 364 (595)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 364 (595)
+...|++++|...++++.+.... +...+..+.... ++......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 77777777777777777765322 222222220000 000001111 11 245556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 365 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLR 444 (595)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 444 (595)
+|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 676666666655332 55666666666677777777777777666552 4456667777777777777777777777777
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHH
Q 040027 445 ILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-------------VVTYNIMIQGLCNDGQMDKARDLFL 511 (595)
Q Consensus 445 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (595)
+.. +.+...+..++.++...|++++|...++++... .|+ ...|..+..++...|++++|..+++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 654 456677777777777777777777777777652 233 5677777788888888888877776
Q ss_pred HHH
Q 040027 512 DME 514 (595)
Q Consensus 512 ~~~ 514 (595)
+.+
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 543
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.3e-17 Score=149.04 Aligned_cols=247 Identities=11% Similarity=0.016 Sum_probs=126.5
Q ss_pred HHHcCCHhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 040027 217 LCKEGFVDKAKALFLQMKDENINPD--VVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMD 294 (595)
Q Consensus 217 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 294 (595)
....|++++|+..++..... .|+ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44456666666666554432 122 22334455666666666666654433 12334455555566666666666
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 040027 295 EASRLLDLMVQRGV-RPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREM 373 (595)
Q Consensus 295 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (595)
+|++.++++...+. +.+...+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666655442 22344455555666666666666666654 344555556666666666666666666666
Q ss_pred HHCCCCCCHHHHHHH----HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 040027 374 VSKGIKPTVVTYNTL----FLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCE 449 (595)
Q Consensus 374 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 449 (595)
.+.. |+.. ...+ +..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++.. +
T Consensus 157 ~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 157 QDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 5542 2221 1111 12222334555555555555544 23444455555555555555555555555555443 3
Q ss_pred cCHHHHHHHHHHHHhcCChHH-HHHHHHhccc
Q 040027 450 LDIQAYNCLIDGLCKSGRLKF-AWELFCSLPH 480 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 480 (595)
.++.++..++.++...|+.++ +.++++++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344455555555555555433 3444444444
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=2.4e-16 Score=156.19 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040027 314 TYNTLMDGFCLMG---KINRAEELFGSMESMGCKHDDVSYNILINGYCKN----KEVEEALSLYREMVSKGIKPTVVTYN 386 (595)
Q Consensus 314 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 386 (595)
.+..+..+|...| +.++|+..|++..+.| +++...+..+..+|... +++++|+..|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4445555555555 5555555555555554 33333334444444333 45556666665554 2 1333444
Q ss_pred HHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 040027 387 TLFLG-L--FEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNG-----YIIEAVELFRTLRILKCELDIQAYNCL 458 (595)
Q Consensus 387 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l 458 (595)
.+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++.. +.++.....+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHH
Confidence 44443 2 34556666666666655543 4444444554444 33 6666666666655 2245555555
Q ss_pred HHHHHh----cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 040027 459 IDGLCK----SGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN----DGQMDKARDLFLDMEENA 517 (595)
Q Consensus 459 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (595)
..+|.. ..++++|...|++..+.| +......|...|.. ..++.+|...|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 555554 236666666666665533 23344445555542 346666666666666654
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=5e-16 Score=153.96 Aligned_cols=379 Identities=10% Similarity=-0.029 Sum_probs=255.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRI---MEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
.+...+.+.|++++|+.+|+++.+.| ++.++..+...|...|+. ++|.++|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999999875 455566677777778888 9999999999864 6667777887666
Q ss_pred hcC-----ChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh---HHHHHHHHHhhCCCCCCHhHHHHHH
Q 040027 178 RTG-----HTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD---KAKALFLQMKDENINPDVVTYNSLI 249 (595)
Q Consensus 178 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~ll 249 (595)
..| ++++|+..|++....+ ++..+..|...|...+..+ ++.+.+......| +...+..|.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 655 7889999999999865 2346777888888766544 4555555555544 456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 040027 250 HGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNR---KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM- 325 (595)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 325 (595)
..|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.|.. +...+..+..+|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 888888855554444333322212234448888999999999 999999999999998743 555556677777655
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---
Q 040027 326 ---GKINRAEELFGSMESMGCKHDDVSYNILING-Y--CKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH--- 396 (595)
Q Consensus 326 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 396 (595)
+++++|+..|++.. . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 78999999999988 3 356677777777 4 46899999999999999875 6677777777776 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cC
Q 040027 397 --QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK----NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCK----SG 466 (595)
Q Consensus 397 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 466 (595)
++++|...|++.. . .+......+...|.. ..++++|..+|++..+.+ +......+..+|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 9999999999887 3 466777777777766 349999999999999866 34556677777764 46
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 467 RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+.++|...|+...+.|. ++.......+......++..+|..+.++...
T Consensus 373 d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 89999999999988652 2222222222222233455666666666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=7.3e-16 Score=136.62 Aligned_cols=198 Identities=10% Similarity=-0.025 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 346 DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFID 425 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 425 (595)
+...+..+...+.+.|++++|+..|+++++..+. +...+..+...+...|++++|+..+++..+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344444444445555555555555554443222 34444444444445555555555555444432 333444444444
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 040027 426 GLCKN-----------GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMI 494 (595)
Q Consensus 426 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 494 (595)
++... |++++|...++++++.. |.+...+..+..++...|++++|+..|+++.+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 67777777777776654 4556666777777777777777777777766643 4566667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040027 495 QGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
.+|...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777653 4456666667777777777777777766654
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=4.2e-13 Score=137.25 Aligned_cols=413 Identities=11% Similarity=0.056 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCC-CCCHhhHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESR---IMEAAALFTKLKAFGC-EPNVITYN 170 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~~ 170 (595)
|...|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.++ ++.+.++|++...... +|+...|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5666667777777778899999999999987 47788889988888888888 9999999999988631 37888888
Q ss_pred HHHHHHHhcCCh--------hHHHHHHHHHHhcCCCCCccc--cCcHHHHHHHHHHHH---------HcCCHhHHHHHHH
Q 040027 171 TLINGLCRTGHT--------MIALNLFEEMANGNGEIGVVC--KPNTVTYSTIIDGLC---------KEGFVDKAKALFL 231 (595)
Q Consensus 171 ~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~ 231 (595)
..+....+.++. +...++|+.++..-+ . +.+...|...+.... ..++++.+..+|+
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-----cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 877766555543 334578887775421 2 234567877776544 2345788999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--CC----C-----------C--C---
Q 040027 232 QMKDENINPDVVTYNSLIHGLCH-------------ANDWNEAKRLFIEMMDQ--GV----Q-----------P--S--- 276 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~~~~~--~~----~-----------~--~--- 276 (595)
+++......-..+|......-.. ..+++.|...+.++... ++ + | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 98863111112333222111111 11234445555443221 11 1 0 0
Q ss_pred ---HhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCC
Q 040027 277 ---VVTFNVIMDELCKNR-------KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAE-ELFGSMESMGCKH 345 (595)
Q Consensus 277 ---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~ 345 (595)
...|...+..-...+ ..+.+..+|++++.. .+.....|...+..+...|+.++|. .+|++.... +|.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 123334443322222 123345667777765 3446777777777777778777785 888887764 355
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHccCCHHHHHHH
Q 040027 346 DDVSYNILINGYCKNKEVEEALSLYREMVSKGI---------KPT------------VVTYNTLFLGLFEIHQVEHALKL 404 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~ 404 (595)
+...|..++....+.|+++.|.++|++++.... .|+ ...|...+....+.|..+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566677777777788888888888887765310 121 22466666666667777888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 040027 405 FDEMQRDGVAADTRTYTTFIDGLCKN-GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL 483 (595)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 483 (595)
|..+.+.........|...+..-.+. ++.+.|..+|+..++.- +.+...+...+......|+.+.|..+|++.+....
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 87777651112233343333332333 34778888888777652 55666667777777777888888888887776422
Q ss_pred CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 484 VP--NVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 484 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
.+ ....|...+..-...|+.+.+..+.+++.+.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2356777777777778888888888887776
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=9.6e-16 Score=135.86 Aligned_cols=200 Identities=16% Similarity=0.017 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 93 FPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
++++..+..+...+.+.|++++|+..|+++++.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5678889999999999999999999999999885 5688899999999999999999999999999985 3478889999
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCC
Q 040027 173 INGLCRT-----------GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPD 241 (595)
Q Consensus 173 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 241 (595)
..++... |++++|+..|++..+.+ |.+...+..+..++...|++++|+..|++..+.+ .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 9999999 99999999999988875 5567888888888999999999999998888776 57
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040027 242 VVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMV 304 (595)
Q Consensus 242 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 304 (595)
...+..+..++...|++++|...|++.++.. +.+...+..+..++...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888899999998888888753 2356677778888888888888888877654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.4e-15 Score=136.64 Aligned_cols=223 Identities=11% Similarity=0.039 Sum_probs=141.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 040027 314 TYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIK--PT----VVTYNT 387 (595)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 387 (595)
.+..++..+...|++++|+..++++.+.. .+...+..+..++...|++++|+..++++.+.... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555543 44455555555555555555555555555543111 01 345555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 040027 388 LFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 388 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (595)
+...+...|++++|...++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 556666666666666666666653 2332 23455566777777777777654 4456677777777777788
Q ss_pred hHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040027 468 LKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHK 547 (595)
Q Consensus 468 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (595)
+++|...++++.... +.+...|..++.+|...|++++|+..++++++.. +.+...+..++.+|...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888777777631 2246677777788888888888888888887764 45577777788888888888888888888
Q ss_pred HHH
Q 040027 548 MKE 550 (595)
Q Consensus 548 ~~~ 550 (595)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9e-15 Score=133.76 Aligned_cols=117 Identities=12% Similarity=-0.024 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 040027 395 IHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWEL 474 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (595)
.|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444454444444431 2233444445555555555555555555555543 33455555555555555555555555
Q ss_pred HHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 475 FCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 475 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
++++.+. .| +...|..+..++...|++++|...++++.+
T Consensus 196 ~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555542 22 245555555566666666666666655554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1e-14 Score=134.64 Aligned_cols=247 Identities=7% Similarity=0.023 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC--HhhHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN--VITYNTLI 173 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 173 (595)
+..+...+..+...|++++|+..|+++++.. +.+...+..+...+...|++++|++.++++......++ ..++..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4455667778888888888888888888874 34566788888888888888888888888887431111 22377888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
..+...|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.|++..+.. +.+...|..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 88888888888888888888765 4556788888888888888888888888887763 335666766663444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHH
Q 040027 254 HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRK---MDEASRLLDLMVQRG-VRPN------ACTYNTLMDGFC 323 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~ 323 (595)
..+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4558888888888887752 2245666667777777776 677777777766531 1122 135556666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 040027 324 LMGKINRAEELFGSMESMGCKHDDVSYNIL 353 (595)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (595)
..|++++|...++++.+.. |.+...+..+
T Consensus 233 ~~~~~~~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7777777777777776653 3344444433
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=1.2e-12 Score=134.00 Aligned_cols=445 Identities=10% Similarity=0.012 Sum_probs=306.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---hhHHHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH---TMIALN 187 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 187 (595)
...+.+..|++.+..+ +-|...|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566677777665 679999999999999999999999999999987 56688889999998888898 999999
Q ss_pred HHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCH--------hHHHHHHHHHhh-CCC-CC-CHhHHHHHHHHHH---
Q 040027 188 LFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFV--------DKAKALFLQMKD-ENI-NP-DVVTYNSLIHGLC--- 253 (595)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~--- 253 (595)
+|++.+.... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 125 lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 125 VLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 9999998631 137888898888776665553 344578887654 354 44 4567777776543
Q ss_pred ------hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------------cCChHHHHHHHHHHHHC--CC----
Q 040027 254 ------HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK-------------NRKMDEASRLLDLMVQR--GV---- 308 (595)
Q Consensus 254 ------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~--~~---- 308 (595)
.+++++.+..+|+.++......-..+|......-.. ..+++.|...+.++... ++
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 234577889999998863211112233222211111 12234445555443221 11
Q ss_pred C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 040027 309 R-----------P-----N---ACTYNTLMDGFCLMG-------KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE 362 (595)
Q Consensus 309 ~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (595)
+ | + ...|...+..-...+ ..+.+..+|++.+.. ++.....|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 1 1 0 123333333322222 123456778888766 36678889988998888999
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC---------CCCC------------HHHH
Q 040027 363 VEEAL-SLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDG---------VAAD------------TRTY 420 (595)
Q Consensus 363 ~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~ 420 (595)
.++|. .+|++.... .+.+...|...+......|+++.|..+|+.++... ..|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99997 999999875 34466667778888889999999999999988631 0131 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS-GRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN 499 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 499 (595)
...+....+.|+.+.|..+|.++++.........|...+..-.+. ++.+.|..+|+..++. .+-+...|...+.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 777777788899999999999998761133345555444444454 4589999999999885 33356777888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 500 DGQMDKARDLFLDMEENAAAP--DVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
.|+.+.|..+|++++....++ ....|..++..-...|+.+.+.++.+++.+. .|+..-...+.+-|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999999999864222 3457777777778899999999999999985 35544555554433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.2e-14 Score=134.27 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 040027 314 TYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT--VVTYNTLFLG 391 (595)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 391 (595)
.+...+..+...|++++|+..++++.+.. +.+...+..+..+|...|++++|+..++++.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666665543 23344566666666666666666666666665321111 2235566666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 040027 392 LFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFA 471 (595)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (595)
+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666542 3345566666667777777777777777666553 44566666666333334477777
Q ss_pred HHHHHhcccCCCCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHHcCChhH
Q 040027 472 WELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQ---MDKARDLFLDMEENA-AAPD------VITFDMLIHGFIRINEPSK 540 (595)
Q Consensus 472 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 540 (595)
...|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++
T Consensus 162 ~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766 3343 5566666666666666 666777777766531 0122 2456667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 541 VNELLHKMKEKKVMPDASIVSIVVDLLVKN 570 (595)
Q Consensus 541 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 570 (595)
|.++++++.+.. +-+...+..+.......
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHC------
T ss_pred HHHHHHHHHhcC-ccHHHHHHHhhhhhccc
Confidence 777777777643 22455555555544433
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2.4e-14 Score=137.26 Aligned_cols=249 Identities=12% Similarity=0.039 Sum_probs=198.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESR-IMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
+...|..+...+...|++++|+..++++++.. +.+..+|+.+...+...|+ +++|+..|++++... +-+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45778888899999999999999999999885 5578899999999999997 999999999999885 33788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
.++...|++++|+..|++++..+ +.+..+|..+..++...|++++|+..|+++++.+. -+...|+.+..++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 99999999999999999999986 66789999999999999999999999999988753 37888999998888
Q ss_pred h-cCCHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 254 H-ANDWNEA-----KRLFIEMMDQGVQPSVVTFNVIMDELCKNR--KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM 325 (595)
Q Consensus 254 ~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (595)
. .|..++| +..|++.+... +-+...|..+..++...| ++++|.+.+.++ +. .+.+...+..++.+|...
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 8 5665777 47788887753 225667888888888877 588888888887 33 344667777788888776
Q ss_pred C---------CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHH
Q 040027 326 G---------KINRAEELFGSM-ESMGCKHDDVSYNILINGY 357 (595)
Q Consensus 326 ~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 357 (595)
| ..++|+.+++++ .+.+ +.....|..+...+
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 3 257888888888 5553 23334555555444
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=1.3e-14 Score=139.05 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 312 ACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE-VEEALSLYREMVSKGIKPTVVTYNTLFL 390 (595)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 390 (595)
...+..+..++...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++++..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3456666777777788888888888877764 4456677778888888885 88888888888776544 6677777888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCChH
Q 040027 391 GLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCK-SGRLK 469 (595)
Q Consensus 391 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 469 (595)
++...|++++|+..|+++++.+ +.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888888764 5577788888888888888888888888888876 6678888888888888 55557
Q ss_pred HH-----HHHHHhcccCCCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----
Q 040027 470 FA-----WELFCSLPHGVLVPN-VVTYNIMIQGLCNDG--QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRIN----- 536 (595)
Q Consensus 470 ~A-----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 536 (595)
+| +..+++++. +.|+ ...|+.+..++...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 77 477888777 4554 678888888888877 688888888887 43 2556778888888888864
Q ss_pred ---C-hhHHHHHHHHH-HHCCCCC-CHHHHHHHHHHHHh
Q 040027 537 ---E-PSKVNELLHKM-KEKKVMP-DASIVSIVVDLLVK 569 (595)
Q Consensus 537 ---~-~~~A~~~~~~~-~~~~~~p-~~~~~~~l~~~~~~ 569 (595)
+ +++|.++++++ .+ +.| ....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 2 58899999998 65 346 45677777776654
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.6e-13 Score=125.25 Aligned_cols=224 Identities=12% Similarity=-0.042 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040027 311 NACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCK----NKEVEEALSLYREMVSKGIKPTVVTYN 386 (595)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 386 (595)
++.++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555566666666666666665552 234455555666666 666666666666666553 455555
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 040027 387 TLFLGLFE----IHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK----NGYIIEAVELFRTLRILKCELDIQAYNCL 458 (595)
Q Consensus 387 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 458 (595)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...++++.+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666666 666666666666666543 45566666666666 667777777777766644 45556666
Q ss_pred HHHHHh----cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 459 IDGLCK----SGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN----DGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 459 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
...|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|+++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 67777777777776663 245566667777777 777777777777777653 2556666777
Q ss_pred HHHH----cCChhHHHHHHHHHHHCC
Q 040027 531 GFIR----INEPSKVNELLHKMKEKK 552 (595)
Q Consensus 531 ~~~~----~g~~~~A~~~~~~~~~~~ 552 (595)
.|.. .+++++|.+++++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 777777777777777654
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=2.8e-13 Score=125.00 Aligned_cols=223 Identities=13% Similarity=-0.048 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCCHhhHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHA----ESRIMEAAALFTKLKAFGCEPNVITYN 170 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 170 (595)
++..+..+...+...|++++|+..|+++.+. .+..++..+...|.. .+++++|++.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666777777777777777777777763 245666666677777 777777777777776654 566666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCCCCH
Q 040027 171 TLINGLCR----TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENINPDV 242 (595)
Q Consensus 171 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 242 (595)
.+...|.. .+++++|+..|++....+ +..++..+...|.. .+++++|.+.|++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 67777776 777777777777766543 45666666666666 677777777777666654 45
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHH
Q 040027 243 VTYNSLIHGLCH----ANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCK----NRKMDEASRLLDLMVQRGVRPNACT 314 (595)
Q Consensus 243 ~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 314 (595)
..+..+...|.. .+++++|..+|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 555566666665 666666666666666542 34455555666666 666666666666666543 2444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 040027 315 YNTLMDGFCL----MGKINRAEELFGSMESM 341 (595)
Q Consensus 315 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 341 (595)
+..+..+|.. .+++++|...|++..+.
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555555555 56666666666665554
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=8.8e-15 Score=135.33 Aligned_cols=255 Identities=10% Similarity=-0.015 Sum_probs=161.6
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040027 38 REGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFI 117 (595)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 117 (595)
+..+...|++++|++.|+++++..+. ++. .++..|..++..+...|++++|+.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~ 64 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRAL--TDD-------------------------ERAQLLYERGVLYDSLGLRALARN 64 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCC--CHH-------------------------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcccc--cCc-------------------------hhHHHHHHHHHHHHHcccHHHHHH
Confidence 33455668899999999998887543 110 134556677788888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040027 118 AFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNG 197 (595)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 197 (595)
.|+++++.. +.+..+|..+...+...|++++|++.|+++.... +.+..++..++..+...|++++|+..|+++....
T Consensus 65 ~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 141 (275)
T 1xnf_A 65 DFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD- 141 (275)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 888888874 4467788888888888888888888888888764 3356777888888888888888888888887754
Q ss_pred CCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 040027 198 EIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP-- 275 (595)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-- 275 (595)
|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...+..........
T Consensus 142 -------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 142 -------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp -------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred -------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 222233334444456677888888777666542 2233333 35566666677777777776665431100
Q ss_pred -CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040027 276 -SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELF 335 (595)
Q Consensus 276 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (595)
+...+..+..++...|++++|...|+++.... |+. +.....++...|++++|++.+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 13445555666666666666666666665542 211 112233444455555554443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=2.8e-14 Score=131.95 Aligned_cols=243 Identities=9% Similarity=-0.041 Sum_probs=121.1
Q ss_pred CChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 040027 291 RKMDEASRLLDLMVQRGV---RPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEAL 367 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 367 (595)
|++++|+..++++.+... +.+..++..++.++...|++++|...|+++.+.. +.+...+..+..+|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123344455555555555555555555555443 334455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 040027 368 SLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILK 447 (595)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 447 (595)
..|+++++..+. +...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555554222 34455555555555555555555555555532 222222222333344566666666665555443
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 040027 448 CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV 522 (595)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 522 (595)
+++...+ .++..+...++.++|...++++... .|+ ..++..++.+|...|++++|...|+++++.. +.+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNF 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTC
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhH
Confidence 2332222 2444555555666666666665542 221 3455566666666666666666666666542 1121
Q ss_pred HHHHHHHHHHHHcCChhHHHHHH
Q 040027 523 ITFDMLIHGFIRINEPSKVNELL 545 (595)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~ 545 (595)
. ....++...|++++|.+.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 1 2233455556666655544
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.4e-14 Score=129.58 Aligned_cols=211 Identities=14% Similarity=0.075 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 348 VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGL 427 (595)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 427 (595)
..+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34555555566666666666666666654322 45556666666666666666666666666542 34556666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKAR 507 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 507 (595)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776654 456667777777777777777777777777663 1224666777777777778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 508 DLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVV 564 (595)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 564 (595)
..++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+...+..+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 234 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHH
Confidence 8877777764 4456677777777778888888888888777642 22344444443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3.8e-13 Score=122.46 Aligned_cols=202 Identities=12% Similarity=-0.007 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
+..|..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.... +.+..++..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556667777777777777777777777663 4456667777777777777777777777776653 2356666667777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhc
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHA 255 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 255 (595)
+...|++++|++.|+++...+. .+.+...+..+..++...|++++|.+.|+++.... +.+...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 7777777777777777765110 13345566666677777777777777777666543 22455666666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 256 NDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 256 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766666542 234455555666666666666666666666654
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=3.6e-13 Score=122.63 Aligned_cols=197 Identities=16% Similarity=0.060 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040027 315 YNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE 394 (595)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (595)
+..++..+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 223334444444444444444444444444433211 33333344444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 040027 395 IHQVEHALKLFDEMQRDGVAA-DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWE 473 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (595)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444443311111 22333333444444444444444444444332 2233334444444444444444444
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 474 LFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 474 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
.++++.+. .+.+...+..+...+...|++++|.++++++.+
T Consensus 197 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44443331 111233333333344444444444444444433
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=4.6e-14 Score=127.75 Aligned_cols=211 Identities=16% Similarity=0.109 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 312 ACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLG 391 (595)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (595)
...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|+..++++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 3445555666666666777776666666543 345556666666777777777777777766665322 55666666677
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHH
Q 040027 392 LFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFA 471 (595)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (595)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 4456667777777778888888888888877665 55677777888888888888888
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040027 472 WELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDML 528 (595)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 528 (595)
...++++.... +.+..++..++.+|...|++++|...++++.+.. +.+...+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 88888877631 2346677788888888888888888888888764 3344444443
No 55
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=5.7e-16 Score=158.26 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRI---LKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTY 490 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 490 (595)
.....+|+++|.+|++.|++++|..+|++|.+ .|+.||..+||.|+.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456899999999999999999999988763 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHH
Q 040027 491 NIMIQGLCNDGQM-DKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD------ASIVSIV 563 (595)
Q Consensus 491 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l 563 (595)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ .-++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78899999999999999999999887655443 455555555 3355554 4555667
Q ss_pred HHHHHhcCc
Q 040027 564 VDLLVKNEI 572 (595)
Q Consensus 564 ~~~~~~~g~ 572 (595)
.+.|.+.|.
T Consensus 279 ~dl~s~d~~ 287 (1134)
T 3spa_A 279 RDVYAKDGR 287 (1134)
T ss_dssp HHHHCCCSC
T ss_pred HHHHccCCC
Confidence 788887774
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2.6e-13 Score=121.04 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 347 DVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDG 426 (595)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 426 (595)
...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 334555555555555555555555555554222 34455555555555666666666665555542 3345555566666
Q ss_pred HHhc-CCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCCh
Q 040027 427 LCKN-GYIIEAVELFRTLRILKC-ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 427 ~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 503 (595)
+... |++++|...++++.+.+. +.+...+..++.++...|++++|...++++.+. .| +...+..++.++...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 6666 666666666666665211 222456666666666777777777777666652 23 356666677777777777
Q ss_pred hHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAA-PDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777776653 3 4556666666666777777777777777765
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=4.8e-13 Score=119.35 Aligned_cols=204 Identities=9% Similarity=-0.054 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
++..|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45666777777777777777777777777663 3456667777777777777777777777777653 335666677777
Q ss_pred HHHhc-CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 040027 175 GLCRT-GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC 253 (595)
Q Consensus 175 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 253 (595)
.+... |++++|+..++++..... .+.+...+..+..++...|++++|...++++.+.. +.+...+..+...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 77777 777777777777766210 13335666667777777777777777777766543 224566666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 254 HANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 254 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
..|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777766665422134455555555666666666666666666543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.7e-14 Score=139.32 Aligned_cols=226 Identities=15% Similarity=0.024 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHccCC--------------------HHHHHH
Q 040027 349 SYNILINGYCKNKEVEEALSLYREMVSKGI-----KPTVVTYNTLFLGLFEIHQ--------------------VEHALK 403 (595)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 403 (595)
++..+...|...|++++|+..++++.+... .....++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555544443200 0012244555555556666 666666
Q ss_pred HHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHHhcCChHHHHH
Q 040027 404 LFDEMQRD----GV-AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC-ELD----IQAYNCLIDGLCKSGRLKFAWE 473 (595)
Q Consensus 404 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 473 (595)
.+.+..+. +. +....++..+...|...|++++|...++++.+... .++ ..++..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66555432 10 11124566677778888888888888887764310 111 3367778888888899988888
Q ss_pred HHHhcccCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHH
Q 040027 474 LFCSLPHGVL-VPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAA-APD----VITFDMLIHGFIRINEPSKVNE 543 (595)
Q Consensus 474 ~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~ 543 (595)
.+++...... .++ ..++..++..|...|++++|...++++.+... ..+ ..++..+..+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888765100 011 45677888888899999999999988876310 111 4567788888999999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCccc
Q 040027 544 LLHKMKEK----KVMP-DASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 544 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 574 (595)
++++..+. +..+ ...++..+..++...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99888742 2222 2567778888888888765
No 59
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=155.12 Aligned_cols=126 Identities=11% Similarity=0.189 Sum_probs=114.5
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhccc---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH---GVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF 525 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (595)
..-..+|++++.+|++.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567899999999999999999999987653 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 526 DMLIHGFIRINEP-SKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 526 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.++.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999999985 789999999999999999999998777666665554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=8.4e-14 Score=137.06 Aligned_cols=278 Identities=12% Similarity=0.037 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhc----C-CCCCH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA----ATFNSLIKGLHAESRIMEAAALFTKLKAF----G-CEPNV 166 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 166 (595)
...+..+...+...|++++|+..|+++++.. +.+. .++..+...|...|++++|...++++... + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567788999999999999999999984 3343 47888889999999999999999988764 1 12245
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCC-----------------HhHHHHH
Q 040027 167 ITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGF-----------------VDKAKAL 229 (595)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 229 (595)
.++..+...|...|++++|+..++++.......+. .+....++..+..+|...|+ +++|.+.
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 67788899999999999999999988764210000 12235578888899999999 8888888
Q ss_pred HHHHhhC----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChHHHHHH
Q 040027 230 FLQMKDE----NI-NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ-PS----VVTFNVIMDELCKNRKMDEASRL 299 (595)
Q Consensus 230 ~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 299 (595)
+++.... +. .....++..+...+...|++++|...+++..+.... .+ ...+..+..++...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8776542 11 112346677777888888888888888777653100 01 12566666777777777777777
Q ss_pred HHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 040027 300 LDLMVQRGVR-----PNACTYNTLMDGFCLMGKINRAEELFGSMESMGC-----KHDDVSYNILINGYCKNKEVEEALSL 369 (595)
Q Consensus 300 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (595)
++++...... ....++..+..++...|++++|...+++...... .....++..+..+|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7766543100 1134555566666666676666666666543210 00122455555566666666666666
Q ss_pred HHHHHH
Q 040027 370 YREMVS 375 (595)
Q Consensus 370 ~~~~~~ 375 (595)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4.4e-14 Score=139.12 Aligned_cols=279 Identities=12% Similarity=0.046 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV----VTFNVIMDELCKNRKMDEASRLLDLMVQR----G-VRPNACT 314 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 314 (595)
.+..+...+...|++++|...|+++++.... +. ..+..+...+...|++++|...++++.+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556667777777777777776664221 22 34556666666677777777766665542 1 0112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCC
Q 040027 315 YNTLMDGFCLMGKINRAEELFGSMESMG-----CKHDDVSYNILINGYCKNKE----------VEEALSLYREMVSKGIK 379 (595)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~ 379 (595)
+..+...|...|++++|...++++.+.. .+....++..+...|...|+ +++|...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 5555555666666666666665554320 01112234444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC--
Q 040027 380 PTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD----G-VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCE-LD-- 451 (595)
Q Consensus 380 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 451 (595)
+++|...+++..+. + .+.....+..+...|...|++++|...++++.+.... .+
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 44444444443321 1 0112235566667777778888887777777643200 11
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHhcccCC--CC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-C
Q 040027 452 --IQAYNCLIDGLCKSGRLKFAWELFCSLPHGV--LV---PNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN----AA-A 519 (595)
Q Consensus 452 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~ 519 (595)
..++..+..+|...|++++|...++++.... .. ....++..+...|...|++++|...++++++. +. .
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 2367778888888888888888888776521 00 11456778888888999999999999888763 10 1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 520 PDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
....++..+..+|...|++++|.++++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11346778888999999999999999999864
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.58 E-value=5.8e-14 Score=137.90 Aligned_cols=281 Identities=11% Similarity=0.052 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc----CCC-
Q 040027 93 FPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN----AATFNSLIKGLHAESRIMEAAALFTKLKAF----GCE- 163 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~- 163 (595)
......+......+...|++++|+..|+++++.. +.+ ..++..+...+...|++++|...++++... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3466777888899999999999999999999884 334 357888889999999999999999987653 111
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCC--------------------H
Q 040027 164 PNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGF--------------------V 223 (595)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~ 223 (595)
....++..+...+...|++++|+..++++.......+. ......++..+...+...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 12456788889999999999999999988764310000 01124478888888999999 8
Q ss_pred hHHHHHHHHHhhC----CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCh
Q 040027 224 DKAKALFLQMKDE----NIN-PDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV-QPS----VVTFNVIMDELCKNRKM 293 (595)
Q Consensus 224 ~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 293 (595)
++|.+.+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888888776542 111 1234567777788888888888888877764310 011 22566667777777777
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhCCCH
Q 040027 294 DEASRLLDLMVQRGVR-PN----ACTYNTLMDGFCLMGKINRAEELFGSMESMGCK-HD----DVSYNILINGYCKNKEV 363 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 363 (595)
++|...+++....... .+ ..++..+..+|...|++++|...+++..+.... .+ ..++..+..+|...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 7777777766542100 01 345556666666777777777666665432100 01 23455556666666666
Q ss_pred HHHHHHHHHHHH
Q 040027 364 EEALSLYREMVS 375 (595)
Q Consensus 364 ~~A~~~~~~~~~ 375 (595)
++|...+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.2e-12 Score=122.99 Aligned_cols=225 Identities=11% Similarity=0.068 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCCh-------hHHHHHHH
Q 040027 48 NEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRV-------SLGFIAFG 120 (595)
Q Consensus 48 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~ 120 (595)
++|+..|+++++.+|. ++..|..++..+...++ .+.+.|++ ++|+.+|+
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~----------------------~l~~~g~~~~~~~~~~~A~~~~~ 88 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSK----------------------LLAEKGDMNNAKLFSDEAANIYE 88 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH----------------------HHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhch----------------------hhhhccchhhcccchHHHHHHHH
Confidence 7899999999999998 88888877766544322 12345664 88999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040027 121 RILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN-VI-TYNTLINGLCRTGHTMIALNLFEEMANGNGE 198 (595)
Q Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 198 (595)
++++.-.+.+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|..+|+++.+..
T Consensus 89 rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 164 (308)
T 2ond_A 89 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-- 164 (308)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 9988322446778888888888899999999999998875 333 33 78888888888888899999988888764
Q ss_pred CCccccCcHHHHHHHHHHHH-HcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-
Q 040027 199 IGVVCKPNTVTYSTIIDGLC-KEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQG-VQP- 275 (595)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~- 275 (595)
+.+...|...+.... ..|++++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++.+... .+|
T Consensus 165 -----p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 165 -----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp -----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred -----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 344455544433322 2588888888888877653 2366777777888888888888888888887752 343
Q ss_pred -CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040027 276 -SVVTFNVIMDELCKNRKMDEASRLLDLMVQR 306 (595)
Q Consensus 276 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 306 (595)
....|..++......|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777777777778888888888777765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.1e-13 Score=132.00 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=158.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHH
Q 040027 245 YNSLIHGLCHANDWNEAKRLFIEMMDQGVQPS----VVTFNVIMDELCKNRKMDEASRLLDLMVQR----GVR-PNACTY 315 (595)
Q Consensus 245 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 315 (595)
+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...++++... +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334445556666666666666666554211 2 234445555555666666666655554432 000 112334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040027 316 NTLMDGFCLMGKINRAEELFGSMESMGC-KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE 394 (595)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (595)
..+...+...|++++|...+++..+... ..+.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4444444555555555555544432200 00000 001233444444444
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 040027 395 IHQ--------------------VEHALKLFDEMQRD----G-VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKC- 448 (595)
Q Consensus 395 ~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 448 (595)
.|+ +++|...+++.... + .+....++..+...+...|++++|...++++.+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 455 55555555444321 1 011123566667777788888888888887764310
Q ss_pred ----CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 040027 449 ----ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL-VPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEEN--- 516 (595)
Q Consensus 449 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 516 (595)
.....++..++..+...|++++|...+++...... .++ ..++..+...|...|++++|...++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11133677788888888999999888888765100 011 456778888899999999999999988763
Q ss_pred -CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 517 -AAA-PDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 517 -~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+.. ....++..+..+|...|++++|..+++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 101 11446778889999999999999999999864
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=5e-12 Score=118.68 Aligned_cols=217 Identities=9% Similarity=0.079 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCH-------hHHHHHHHHHHh-cCCCCCHhhHHHHHHHHH
Q 040027 113 SLGFIAFGRILRSCFTPNAATFNSLIKGLHA-------ESRI-------MEAAALFTKLKA-FGCEPNVITYNTLINGLC 177 (595)
Q Consensus 113 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 177 (595)
++|+.+|++++... +.++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56667777777653 4566677666666543 3554 566666666655 22 224445566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHH-HHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH-hc
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTV-TYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLC-HA 255 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~ 255 (595)
..|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..
T Consensus 111 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Confidence 6666666666666666533 22232 55555555555666666666666655542 122333332222211 14
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 040027 256 NDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRG-VRP--NACTYNTLMDGFCLMGKINRAE 332 (595)
Q Consensus 256 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 332 (595)
|++++|..+|+..++.. +.+...|..++..+.+.|++++|..+|+++.... .+| ....|..++......|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554431 1234444445555555555555555555555431 122 2334444444444455555555
Q ss_pred HHHHHHHh
Q 040027 333 ELFGSMES 340 (595)
Q Consensus 333 ~~~~~~~~ 340 (595)
.+++++.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=1.4e-12 Score=112.15 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 040027 381 TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLID 460 (595)
Q Consensus 381 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 460 (595)
+...|..+...+...|++++|++.|++.++.+ |.+...+..+..+|.+.|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666666666666666666553 4455666666666667777777777777666654 445666666666
Q ss_pred HHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 040027 461 GLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPS 539 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 539 (595)
.+...++++.|...+.+.... .| +...+..+..+|...|++++|++.|+++++.. +.+..++..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 677777777777777766652 33 35666677777777777777777777777654 445667777777777777777
Q ss_pred HHHHHHHHHHH
Q 040027 540 KVNELLHKMKE 550 (595)
Q Consensus 540 ~A~~~~~~~~~ 550 (595)
+|.+.|+++++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777776
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.8e-13 Score=130.46 Aligned_cols=278 Identities=11% Similarity=0.052 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc----CCC-CCH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN----AATFNSLIKGLHAESRIMEAAALFTKLKAF----GCE-PNV 166 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~ 166 (595)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455667788999999999999999999874 334 357788889999999999999999987653 111 135
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCC--------------------HhHH
Q 040027 167 ITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGF--------------------VDKA 226 (595)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A 226 (595)
.++..+...+...|++++|+..+++........+. ......++..+...+...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 57788899999999999999999998764211000 01114477888888989999 8888
Q ss_pred HHHHHHHhhC----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChHHH
Q 040027 227 KALFLQMKDE----NI-NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQ-PS----VVTFNVIMDELCKNRKMDEA 296 (595)
Q Consensus 227 ~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a 296 (595)
.+.+++.... +. ......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776432 10 112335666677777778888887777776542100 01 12455556666666666666
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhCCCHHHH
Q 040027 297 SRLLDLMVQRGVR-PN----ACTYNTLMDGFCLMGKINRAEELFGSMESMG----C-KHDDVSYNILINGYCKNKEVEEA 366 (595)
Q Consensus 297 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~A 366 (595)
...+++....... .+ ..++..+..++...|++++|...+++..... . .....++..+...|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666655432100 01 2344445555555555555555555543321 0 00012344444455555555555
Q ss_pred HHHHHHHHH
Q 040027 367 LSLYREMVS 375 (595)
Q Consensus 367 ~~~~~~~~~ 375 (595)
...+++..+
T Consensus 323 ~~~~~~a~~ 331 (338)
T 3ro2_A 323 MHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=3.6e-13 Score=134.30 Aligned_cols=211 Identities=10% Similarity=-0.037 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 040027 329 NRAEELFGSMESMGCKHDDVSYNILINGYCKNKEV-EEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDE 407 (595)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 407 (595)
+++...++...... +.+...+..+...+...|++ ++|++.|+++++..+. +...+..+...|...|++++|...|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443331 23444555555555566666 6666666655554322 445555666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CChHH
Q 040027 408 MQRDGVAADTRTYTTFIDGLCKN---------GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS--------GRLKF 470 (595)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 470 (595)
+.+. .|+...+..+..++... |++++|...++++.+.. +.+...+..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6554 34455555566666666 77777777777777665 55667777777777776 77777
Q ss_pred HHHHHHhcccCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040027 471 AWELFCSLPHGVLVP----NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLH 546 (595)
Q Consensus 471 A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 546 (595)
|+..|+++.+ +.| +...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|++++|.+.++
T Consensus 240 A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776 344 56777777788888888888888888887764 4456677777777777777777776543
Q ss_pred H
Q 040027 547 K 547 (595)
Q Consensus 547 ~ 547 (595)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=2e-12 Score=125.75 Aligned_cols=226 Identities=14% Similarity=0.056 Sum_probs=108.0
Q ss_pred HHHcCCHhHHHHHHHHHhhC--CCCCC--HhHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCHh-
Q 040027 217 LCKEGFVDKAKALFLQMKDE--NINPD--VVTYNSLIHG--LCHANDWNEAK-----------RLFIEMMDQGVQPSVV- 278 (595)
Q Consensus 217 ~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~ll~~--~~~~~~~~~A~-----------~~~~~~~~~~~~~~~~- 278 (595)
+.+.+++++|..+++++.+. ....+ ...|-.++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 55689999999999988664 22223 3333333322 12223333333 4444443321 1111
Q ss_pred -----hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C--
Q 040027 279 -----TFNVIMDELCKNRKMDEASRLLDLMVQR----GVRP-NACTYNTLMDGFCLMGKINRAEELFGSMESMGCK-H-- 345 (595)
Q Consensus 279 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 345 (595)
.+......+...|++++|...++++.+. +..+ ...++..++.+|...|+++.|...+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1112445566667777777777766553 1111 2345556666666666666666666665432100 0
Q ss_pred ---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CC
Q 040027 346 ---DDVSYNILINGYCKNKEVEEALSLYREMVSKGIK-PT----VVTYNTLFLGLFEIHQVEHALKLFDEMQRD----GV 413 (595)
Q Consensus 346 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 413 (595)
...++..+..+|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1224555555666666666666666555432100 00 123444444444555555555554444431 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 414 -AADTRTYTTFIDGLCKNGYIIEAVELFRTLR 444 (595)
Q Consensus 414 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 444 (595)
+....++..+..+|.+.|++++|...+++..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2223334444444444444444444444443
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.2e-12 Score=111.01 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 349 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLC 428 (595)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 428 (595)
.|..+...|...|++++|++.|++.++..+. +...+..+...+...|++++|...+..+.... +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 3333444444444444444444444333222 33333334444444444444444444433331 223333333344444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 040027 429 KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKAR 507 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 507 (595)
..++++.|...+.++.... +.+...+..++.++...|++++|+..|+++.+ +.| +..+|..++.+|...|++++|+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 4444444444444444433 33344444444444444444444444444444 122 2344444444444444455554
Q ss_pred HHHHHHHH
Q 040027 508 DLFLDMEE 515 (595)
Q Consensus 508 ~~~~~~~~ 515 (595)
+.|+++++
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.3e-12 Score=127.09 Aligned_cols=297 Identities=11% Similarity=-0.028 Sum_probs=206.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCCH--hhHHHHHH--HHHhcCChHHHH-----------HHHHHHHHCCCCCC--
Q 040027 251 GLCHANDWNEAKRLFIEMMDQ--GVQPSV--VTFNVIMD--ELCKNRKMDEAS-----------RLLDLMVQRGVRPN-- 311 (595)
Q Consensus 251 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~--~~~~~g~~~~a~-----------~~~~~~~~~~~~~~-- 311 (595)
.+.+.+++++|..+++++.+. .+..+. ..|..++. .....+.++.+. +.++.+.......+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 356789999999999998664 232333 23333332 222233344444 66666544211111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C---
Q 040027 312 --ACTYNTLMDGFCLMGKINRAEELFGSMESM----GCKH-DDVSYNILINGYCKNKEVEEALSLYREMVSKGIK-P--- 380 (595)
Q Consensus 312 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--- 380 (595)
...+...+..+...|++++|...+++..+. +-++ ...++..+..+|...|++++|+..+.+..+.... +
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 112223667788899999999999998764 1111 2357888999999999999999999988763111 1
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 040027 381 --TVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGV-AAD----TRTYTTFIDGLCKNGYIIEAVELFRTLRIL----KC- 448 (595)
Q Consensus 381 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~- 448 (595)
...++..+...+...|++++|...+++..+... .++ ..++..+..+|...|++++|...++++.+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 234678888899999999999999988875310 112 246778888999999999999999998862 32
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCC---CCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGV---LVPN-VVTYNIMIQGLCNDGQ---MDKARDLFLDMEENAAAP- 520 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~- 520 (595)
+....++..++.++...|++++|...+++..... -.|. ...+..+...|...|+ +++|+.++++. +..+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence 4446788899999999999999999999887621 0121 2335667788888888 77777777765 2222
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 521 DVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
....+..++..|...|++++|..+++++.+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 245677889999999999999999999874
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=4e-12 Score=126.76 Aligned_cols=192 Identities=15% Similarity=0.034 Sum_probs=81.5
Q ss_pred HhhHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040027 277 VVTFNVIMDELCKNRKM-DEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILIN 355 (595)
Q Consensus 277 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (595)
...+..+...+...|++ ++|...|+++.+.. +.+...+..+..+|...|++++|+..|+++.+. .|+...+..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 33444444444444444 44444444444432 113334444444444444444444444444443 233344444444
Q ss_pred HHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCC---C
Q 040027 356 GYCKN---------KEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEI--------HQVEHALKLFDEMQRDGVA---A 415 (595)
Q Consensus 356 ~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~---~ 415 (595)
++... |++++|+..|+++++..+. +...+..+..++... |++++|...|+++.+.. + .
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 44444 4444444444444443221 333444444444433 44444444444444331 1 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 040027 416 DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWEL 474 (595)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (595)
+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+..
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433 33334444444444444444444443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=7.4e-13 Score=124.72 Aligned_cols=244 Identities=12% Similarity=0.021 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-
Q 040027 278 VTFNVIMDELCKNRKMDEASRLLDLMVQR-------GVRPNACTYNTLMDGFCLMGKINRAEELFGSMESM------GC- 343 (595)
Q Consensus 278 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~- 343 (595)
.++..+...+...|++++|..+++++.+. ..+....++..+..+|...|++++|...++++... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555666666666666555542 11222334445555555555555555555554432 10
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 344 KHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTF 423 (595)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 423 (595)
+.....+..+...|...|++++|...++++.+... .......+.....+..+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHHHH
Confidence 11223444444555555555555555544443200 00000001122334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC-------CCCCC---
Q 040027 424 IDGLCKNGYIIEAVELFRTLRIL------K-CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG-------VLVPN--- 486 (595)
Q Consensus 424 ~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~--- 486 (595)
...+...|++++|...++++... + .+....++..++.+|...|++++|...++++.+. ...+.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 55555555555555555555443 1 1222344555566666666666666666655531 01111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 487 ----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 487 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
...+..+...+...+.+.+|...+....... +....++..++.+|...|++++|.++++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222233344556666666666666542 33456777788888888888888888888775
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=2.1e-11 Score=118.25 Aligned_cols=312 Identities=11% Similarity=-0.003 Sum_probs=140.9
Q ss_pred cCcHHHHHHHHHHH--HHcCCHhHHHHHHHHHhhC--CCC--CCHhHHHHHHHHH--HhcCCHHHHH---------HHHH
Q 040027 204 KPNTVTYSTIIDGL--CKEGFVDKAKALFLQMKDE--NIN--PDVVTYNSLIHGL--CHANDWNEAK---------RLFI 266 (595)
Q Consensus 204 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~ll~~~--~~~~~~~~A~---------~~~~ 266 (595)
.|+..+-..+-..| ...+++++|..+++++.+. ... .+...|-.|+..- .-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555565565 7789999999999887653 111 2233333333221 1111111111 3333
Q ss_pred HHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 267 EMMDQGVQPSV----VTFNVIMDELCKNRKMDEASRLLDLMVQRGV-RP----NACTYNTLMDGFCLMGKINRAEELFGS 337 (595)
Q Consensus 267 ~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (595)
.+.....+.+. ..+......+...|++++|...|+++.+... .+ ...++..++.+|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33221000000 0122233344555555555555555544210 01 123444455555555555555555555
Q ss_pred HHhcCC--C----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 040027 338 MESMGC--K----HDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD 411 (595)
Q Consensus 338 ~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 411 (595)
..+... . ....++..+..+|...|++++|.+.+++..+.. .+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------------------------~~~ 215 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-------------------------------MDI 215 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHT
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------------------------------HHc
Confidence 432200 0 012234444444555555555555544443310 000
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--
Q 040027 412 GVA-ADTRTYTTFIDGLCKNGYIIEAVELFRTLRI-----LKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL-- 483 (595)
Q Consensus 412 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-- 483 (595)
+.+ ....++..+..+|...|++++|...++++.. .. +....++..++.++.+.|++++|...+++..+...
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 000 0122344455555555556655555555554 22 22345555566666666666666666665544110
Q ss_pred -CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 484 -VPN-VVTYNIMIQGLCNDGQ---MDKARDLFLDMEENAAAP-DVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 484 -~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.|. ...+..+...|...++ +.+|+..+++. +..+ ....+..++..|...|++++|...++++.+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 2233444444555555 55555555542 1112 223445566666666666666666666653
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=122.69 Aligned_cols=172 Identities=18% Similarity=0.128 Sum_probs=128.7
Q ss_pred cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 040027 204 KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-------NINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQ----- 271 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----- 271 (595)
+....++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++.+..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445778888999999999999999999988763 22334567888889999999999999999888764
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 040027 272 -GV-QPSVVTFNVIMDELCKNRKMDEASRLLDLMVQR------GV-RPNACTYNTLMDGFCLMGKINRAEELFGSMESM- 341 (595)
Q Consensus 272 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 341 (595)
+. +.....+..+...+...|++++|...++++.+. +. +.....+..+..++...|++++|+..++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 223456777888888999999999998888764 11 223455677788888888888888888887654
Q ss_pred -----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 342 -----G-CKHDDVSYNILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 342 -----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
+ .+....++..+..+|...|++++|...++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122234677778888888888888888887775
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=3.6e-11 Score=116.53 Aligned_cols=226 Identities=11% Similarity=-0.022 Sum_probs=158.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCC----CCHHHH
Q 040027 352 ILINGYCKNKEVEEALSLYREMVSKGI-KP----TVVTYNTLFLGLFEIHQVEHALKLFDEMQRD--GVA----ADTRTY 420 (595)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~ 420 (595)
.....+...|++++|+..|+++..... .+ ...++..+...+...|+++.|...+.+..+. ... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556667777777777777654311 01 2345666677777777777777777766542 111 123467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHhccc-----CCCCCCHHHH
Q 040027 421 TTFIDGLCKNGYIIEAVELFRTLRIL----KCE-LDIQAYNCLIDGLCKSGRLKFAWELFCSLPH-----GVLVPNVVTY 490 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 490 (595)
..+..+|...|++++|...++++.+. +.+ ....++..++.+|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 77888888999999999988887753 111 1245788899999999999999999999876 32 2236788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCC-CHHHHHH
Q 040027 491 NIMIQGLCNDGQMDKARDLFLDMEENAA---APD-VITFDMLIHGFIRINE---PSKVNELLHKMKEKKVMP-DASIVSI 562 (595)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~ 562 (595)
..++.+|.+.|++++|...+++..+... .+. ...+..+...|...|+ +.+|..++++. +..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8999999999999999999999987421 222 3456666677777888 77777777763 3333 3567788
Q ss_pred HHHHHHhcCcccccchHHH
Q 040027 563 VVDLLVKNEISLKSLPSFL 581 (595)
Q Consensus 563 l~~~~~~~g~~~~~i~~~~ 581 (595)
++..|.+.|++++++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 9999999999996655543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=2e-10 Score=111.14 Aligned_cols=163 Identities=11% Similarity=-0.002 Sum_probs=75.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-C-HHHHH----
Q 040027 387 TLFLGLFEIHQVEHALKLFDEMQRDGV----AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCEL-D-IQAYN---- 456 (595)
Q Consensus 387 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~---- 456 (595)
.+...+...|++++|...+++...... +.....+..+...+...|++++|...+++.......+ . .....
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 344444445555555555544443210 0012334444555555566666666555554321011 1 11111
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHH
Q 040027 457 CLIDGLCKSGRLKFAWELFCSLPHGVLVPN---VVTYNIMIQGLCNDGQMDKARDLFLDMEEN----AAAPDV-ITFDML 528 (595)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l 528 (595)
..+..+...|++++|...+++.......++ ...+..+...+...|++++|...++++... +..++. ..+..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 122334556666666666666554211111 123445555666666666666666665432 111111 244455
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 040027 529 IHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~ 549 (595)
..++...|++++|...+++..
T Consensus 300 a~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 556666666666666666655
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.4e-10 Score=112.36 Aligned_cols=277 Identities=11% Similarity=-0.014 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC-CC----HhhH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAA----TFNSLIKGLHAESRIMEAAALFTKLKAFGCE-PN----VITY 169 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~ 169 (595)
+......+...|++++|...+++++......+.. +++.+...+...|++++|.+.+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566778999999999999998875333332 4566677888999999999999988764211 12 2235
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccc-cCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCC----CCHhH
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVC-KPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENIN----PDVVT 244 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~ 244 (595)
..+...+...|++++|...+++........+... +.....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6778889999999999999998876431111000 113456677888899999999999999987754211 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 040027 245 YNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSV-VTFN-----VIMDELCKNRKMDEASRLLDLMVQRGVRP---NACTY 315 (595)
Q Consensus 245 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 315 (595)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 777788888899999999998887653111111 1111 22334667888888888887776543211 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 316 NTLMDGFCLMGKINRAEELFGSMESM----GCKHDD-VSYNILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
..+..++...|++++|...++..... +.+++. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55666777777777777777766432 111111 2444455556666666666666666554
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=8.2e-11 Score=105.05 Aligned_cols=206 Identities=13% Similarity=-0.010 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 346 DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFID 425 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 425 (595)
++..+......+...|++++|+..|++.++....++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3445555555555666666666666655554432445555555556666666666666666666542 334455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHH
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDI-------QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN---VVTYNIMIQ 495 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 495 (595)
+|...|++++|...++++.+.. +.+. ..+..+...+...|++++|+..|+++++ +.|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 6666666666666666666554 3334 3466666667777777777777777776 3454 345666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040027 496 GLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVD 565 (595)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 565 (595)
+|...| ...++++...+ ..+...+.... ....+.+++|...++++.+. .| +..+...+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 665433 33445554443 33334443332 23445677788888877764 35 3444444433
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=2.2e-11 Score=126.23 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 040027 383 VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGL 462 (595)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (595)
..++.+...+...|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..|+++++.. +.+..++..++.+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554432 3334455555555555555555555555555544 34455555555555
Q ss_pred HhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 463 CKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
...|++++|++.|+++++ +.|+ ...|+.+..+|...|++++|++.|+++++.. +.+...+..++.+|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555555 3333 4555555566666666666666666665543 33455555566666666666666
Q ss_pred HHHHHHHH
Q 040027 542 NELLHKMK 549 (595)
Q Consensus 542 ~~~~~~~~ 549 (595)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=1.9e-11 Score=126.65 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
++..|+.+...+.+.|++++|+..|+++++.. +-+..+|..+...|.+.|++++|++.|++.++.. +-+..++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57889999999999999999999999999985 4578899999999999999999999999999885 337889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
+|...|++++|++.|++..+.+ +.+..+|..+..+|...|++++|++.|++..+.. +-+...|..++.++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 9999999999999999999876 5678899999999999999999999999998864 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 040027 255 ANDWNEAKRLFIEMMD 270 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~ 270 (595)
.|++++|.+.++++++
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=9.5e-11 Score=104.61 Aligned_cols=208 Identities=10% Similarity=-0.017 Sum_probs=161.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.|+..+...+..+...|++++|+..|+++++...+++...+..+..++...|++++|++.|++..... +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788999999999999999999999999998644788888889999999999999999999999875 33678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH-------HHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCC---Hh
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT-------VTYSTIIDGLCKEGFVDKAKALFLQMKDENINPD---VV 243 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ 243 (595)
.++...|++++|+..|++..+.. |.+. ..|..+...+...|++++|.+.|+++.+. .|+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 99999999999999999999875 4445 56888889999999999999999999886 343 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMD 320 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 320 (595)
.|..+..+|...|+ .+++++...+. .+...+... .....+.+++|...+++..+... .+..+...+..
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~~~-~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~ 222 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPLAS-SNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGGTT-TCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhccc-CCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 77778877765543 34455544321 233333333 23445678999999999998642 24444444433
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=6.3e-11 Score=101.76 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 040027 384 TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLC 463 (595)
Q Consensus 384 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (595)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555666666666666666665542 3455666666667777777777777777776654 455666777777777
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040027 464 KSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNE 543 (595)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 543 (595)
..|++++|...++++... .+.+...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776653 12345667777777777777888877777777764 4456777777777777888888888
Q ss_pred HHHHHHH
Q 040027 544 LLHKMKE 550 (595)
Q Consensus 544 ~~~~~~~ 550 (595)
+++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=7.8e-11 Score=101.15 Aligned_cols=164 Identities=15% Similarity=0.024 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
..+..++..+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445566667777777777777777776653 3456666677777777777777777777776653 33566666667777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHAN 256 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 256 (595)
...|++++|.+.++++.... +.+...+..+..++...|++++|.+.++++.... +.+...+..+...+...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 77777777777777776654 3456666666677777777777777777666543 234566666666666777
Q ss_pred CHHHHHHHHHHHHH
Q 040027 257 DWNEAKRLFIEMMD 270 (595)
Q Consensus 257 ~~~~A~~~~~~~~~ 270 (595)
++++|...++++.+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777776666654
No 85
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.28 E-value=1.1e-08 Score=101.67 Aligned_cols=385 Identities=10% Similarity=-0.020 Sum_probs=196.6
Q ss_pred hcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-hhHH
Q 040027 108 KIG-RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH-TMIA 185 (595)
Q Consensus 108 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 185 (595)
+.| +.+.|+.+|++++.. -|. |+++.+..+|++.... .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 346 488888888888765 222 7889999999998875 5688888888877766663 4567
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHH----HcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLC----KEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEA 261 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 261 (595)
..+|+.+...-+. -+.+...|...+..+. ..++.+.+.++|++.+......-...|...... ........+
T Consensus 68 ~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccH
Confidence 7788887764210 1345678887777654 346788899999999874211111122222111 111111122
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHH
Q 040027 262 KRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLM--GK-----INRAEEL 334 (595)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-----~~~a~~~ 334 (595)
..++.+.. +.+..|..+++.+...-...+...|...+..-... +- .+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22211111 11222222222222110001222333322221111 00 2334555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---
Q 040027 335 FGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRD--- 411 (595)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 411 (595)
|++++... +.+...|...+..+.+.|+.+.|..+|++.+.. +.+...+..... +...++. ...+.+.....
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~-~~e~~~~--~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGL-VMDEEAV--YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHH-HTTCTHH--HHHHHHHTC-----
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHh-hcchhHH--HHHHHHHHHhhccc
Confidence 66655532 444555666666666666666666666666655 212222211111 1111110 11111110000
Q ss_pred --CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCC
Q 040027 412 --GV---AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSG-RLKFAWELFCSLPHGVLVP 485 (595)
Q Consensus 412 --~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p 485 (595)
+. ......|...+....+.++.+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|+...+. .+-
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~ 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPD 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTT
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCC
Confidence 00 011244555566666667788888888877 322 234444443333323333 588888888877763 222
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
++..|...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555666666677788888888888762 2566677766665667888888887777763
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=1.3e-08 Score=101.11 Aligned_cols=125 Identities=15% Similarity=0.052 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 040027 383 VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCK-NGYIIEAVELFRTLRILKCELDIQAYNCLIDG 461 (595)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (595)
..|...+....+.++.+.|..+|+.+ +. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44566666666677889999999888 32 12344555433332222 336899999999988754 4456667777887
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 462 LCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
....|+.+.|..+|+++.. ....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999843 577888888877888999999998888875
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=9.7e-11 Score=108.32 Aligned_cols=227 Identities=12% Similarity=-0.017 Sum_probs=154.9
Q ss_pred HhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 040027 323 CLMGKINRAEELFGSMESM-------GCKHDDVSYNILINGYCKNKEVEEALSLYREMVSK------GI-KPTVVTYNTL 388 (595)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 388 (595)
...|++++|+..+++..+. ..+....++..+...|...|++++|+..++++... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766542 21234557888999999999999999999998764 11 2234577888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCcCHHH
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRD------G-VAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL------K-CELDIQA 454 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 454 (595)
...+...|++++|...+.++.+. . .+.....+..+...|...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1 1233567778888899999999999999999865 1 1334567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH---c---CCCC
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHG-------VLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEE---N---AAAP 520 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~~ 520 (595)
+..++.+|...|++++|...++++.+. ...+. ...|..+...+...+....+.. +..+.. . ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888899999999999999999988752 11222 2334444444443333333222 222211 1 1122
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 521 DVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
...++..++.+|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245678889999999999999999999875
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.6e-10 Score=106.89 Aligned_cols=164 Identities=13% Similarity=0.039 Sum_probs=123.4
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc------CC-CCCHhhHHHH
Q 040027 107 CKIGRVSLGFIAFGRILRS-------CFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF------GC-EPNVITYNTL 172 (595)
Q Consensus 107 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 172 (595)
...|++++|+..|+++++. ..+....++..+...+...|++++|+..++++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888877763 22334667888999999999999999999998765 21 2245678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcc-ccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC------C-CCCCHhH
Q 040027 173 INGLCRTGHTMIALNLFEEMANGNGEIGVV-CKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE------N-INPDVVT 244 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 244 (595)
...+...|++++|++.|+++.......... .+....++..+..++...|++++|...++++... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988651000000 1334678888999999999999999999988764 1 1123556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 245 YNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 245 ~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888899999999999999988875
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=7.2e-09 Score=93.96 Aligned_cols=178 Identities=9% Similarity=0.016 Sum_probs=95.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040027 366 ALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGV-AADTRTYTTFIDGLCKNGYIIEAVELFRTLR 444 (595)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 444 (595)
|+..+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444445555666666666666666666654431 1244555556666666666666666666665
Q ss_pred HcCCCc-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 040027 445 ILKCEL-----DIQAYNCLIDG--LCKSG--RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEE 515 (595)
Q Consensus 445 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (595)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 23 23344444433 22223 666666666666552 34422222333356666666666666665543
Q ss_pred c-----CC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 516 N-----AA----APDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 516 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
. +. +.++.++..++......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 00 2344555455555555665 66666666665
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.4e-09 Score=100.94 Aligned_cols=205 Identities=14% Similarity=-0.018 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--C-CHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 040027 114 LGFIAFGRILRSCFTPNAATFNSLIKGLHAE--S-RIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFE 190 (595)
Q Consensus 114 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 190 (595)
+|..++.++.+.- +++...| .+ .+. + ++++|...|++. +..|...|++++|+..|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4666666666652 2222222 22 232 1 477777777776 345667888888888888
Q ss_pred HHHhcCCCCCccccC-cHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC---CC--CHhHHHHHHHHHHhc-CCHHHHHH
Q 040027 191 EMANGNGEIGVVCKP-NTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI---NP--DVVTYNSLIHGLCHA-NDWNEAKR 263 (595)
Q Consensus 191 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~A~~ 263 (595)
+........+ .++ ...+|+.+..+|...|++++|+..|++...... .+ ...++..+...|... |++++|+.
T Consensus 62 ~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 62 KAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 7765421000 011 245777888888888888888888877665310 00 123566666666664 77777777
Q ss_pred HHHHHHHCCCCC-C----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 040027 264 LFIEMMDQGVQP-S----VVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNA------CTYNTLMDGFCLMGKINRAE 332 (595)
Q Consensus 264 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~ 332 (595)
.|++.++..... + ..++..+...+...|++++|+..|+++......... ..+..++.++...|++++|+
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776665431000 0 234555666666666666666666666654322111 13444555566666666666
Q ss_pred HHHHHHHhc
Q 040027 333 ELFGSMESM 341 (595)
Q Consensus 333 ~~~~~~~~~ 341 (595)
..+++..+.
T Consensus 220 ~~~~~al~l 228 (292)
T 1qqe_A 220 RTLQEGQSE 228 (292)
T ss_dssp HHHHGGGCC
T ss_pred HHHHHHHhh
Confidence 666665543
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=7.1e-10 Score=97.09 Aligned_cols=191 Identities=10% Similarity=0.038 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 348 VSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGL 427 (595)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 427 (595)
..+......+...|++++|+..|+++++..+. +...+... .... ...........+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWT-----NVDK--------------NSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHHH
Confidence 34444555666777777777777777765211 11222110 0000 0011112233467778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCC--hh
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQ--MD 504 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~ 504 (595)
.+.|++++|...|+++++.. |.+...+..++.++...|++++|+..|+++++ +.|+ ...|..+..+|...|+ ..
T Consensus 65 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 88888888888888888776 66788888888888888888888888888887 4554 6777777777765543 34
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
.+...++.... ..|....+.....++...|++++|...|+++++ +.|+......+.+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 45555555432 223333445566677778888888888888886 4577665555444
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=1.4e-09 Score=99.33 Aligned_cols=102 Identities=10% Similarity=-0.020 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--CCHhh
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN---AATFNSLIKGLHAESRIMEAAALFTKLKAFGCE--PNVIT 168 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 168 (595)
.++..+..++..+.+.|++++|+..|+++++.. +.+ ..++..+..++.+.|++++|+..|+++.+.... ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 467888889999999999999999999999874 333 678889999999999999999999999987421 12456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhcC
Q 040027 169 YNTLINGLCR--------TGHTMIALNLFEEMANGN 196 (595)
Q Consensus 169 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~ 196 (595)
+..+..++.. .|++++|+..|+++....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 7788888888 999999999999999875
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.19 E-value=1.1e-09 Score=95.82 Aligned_cols=181 Identities=7% Similarity=-0.038 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
++..+...+..+...|++++|+..|+++++.. +.+...|... ...+. ..........+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch--------------hhhhHHHHHHHHH
Confidence 44555566677788888888888888888763 2233444440 00000 0001111222444
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
+|...|++++|+..|++..+.+ |.+...+..+..++...|++++|...|+++.+.. +.+..+|..+...|..
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555555555555555555443 3344455555555555555555555555554432 1234444444444433
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 255 AND--WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 255 ~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
.|+ ...+...+..... ..|....+.....++...|++++|...|+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 332 2223333333321 111112223333444445555555555555554
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=9.8e-11 Score=96.42 Aligned_cols=143 Identities=6% Similarity=-0.047 Sum_probs=103.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCC
Q 040027 424 IDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 424 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 502 (595)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|+++++ +.| +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 344555677788888887776542 33345566778888888888888888888877 445 46778888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCc
Q 040027 503 MDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNEL-LHKMKEKKVMP-DASIVSIVVDLLVKNEI 572 (595)
Q Consensus 503 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 572 (595)
+++|+..|+++++.. +.+...+..++.+|.+.|++++|.+. ++++.+. .| ++.+|.....++.+.|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 888888888888864 44677788888888888888766554 5777763 35 56777777777777764
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=4.2e-10 Score=117.42 Aligned_cols=152 Identities=9% Similarity=-0.076 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...+..+...+.+.|++++|+..|+++++.. +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 66777788888999999999999999999875 5578899999999999999999999999999885 336788899999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
++...|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+..++..
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 9999999999 99999999876 5678899999999999999999999999988763 2245677777777766
Q ss_pred cCC
Q 040027 255 AND 257 (595)
Q Consensus 255 ~~~ 257 (595)
.++
T Consensus 581 ~~~ 583 (681)
T 2pzi_A 581 GRS 583 (681)
T ss_dssp ---
T ss_pred cCC
Confidence 554
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=1.9e-09 Score=100.05 Aligned_cols=205 Identities=10% Similarity=0.020 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-C----H
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRS----CFTPN-AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-N----V 166 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~ 166 (595)
..|...+..|...|++++|...|+++... +.+++ ..+|+.+...|...|++++|+..|++........ + .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35667788899999999999999998765 21111 4678899999999999999999999987642111 1 3
Q ss_pred hhHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCH---
Q 040027 167 ITYNTLINGLCRT-GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDV--- 242 (595)
Q Consensus 167 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 242 (595)
.++..+..+|... |++++|+..|++........+. ......++..+...+...|++++|...|++..........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 5788899999996 9999999999999875310000 0001356788889999999999999999998875432221
Q ss_pred ---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh------hHHHHHHHHH--hcCChHHHHHHHHHHH
Q 040027 243 ---VTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVV------TFNVIMDELC--KNRKMDEASRLLDLMV 304 (595)
Q Consensus 243 ---~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~ 304 (595)
..|..+..++...|++++|...|++.++. .|+.. .+..++..+. ..+++++|+..|+.+.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 14667778888889999999988887653 22211 2233444443 3455666666665544
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.9e-08 Score=91.20 Aligned_cols=244 Identities=10% Similarity=-0.025 Sum_probs=131.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 103 INCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
++...-.|++..++.-.. +.........-..+.++|...|+++.. ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 334455677777776332 222122223333445666666666531 111223223332222 22221
Q ss_pred hHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCC-CCCHhHHHHHHHHHHhcCCHHHH
Q 040027 183 MIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENI-NPDVVTYNSLIHGLCHANDWNEA 261 (595)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A 261 (595)
|+..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|
T Consensus 85 --a~~~l~~l~~~~-------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 85 --NIEELENLLKDK-------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp --CCHHHHHTTTTS-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 566666665542 23444455666777777777777777777655432 12455666667777777777777
Q ss_pred HHHHHHHHHCCCCC-----CHhhHHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040027 262 KRLFIEMMDQGVQP-----SVVTFNVIMDE--LCKNR--KMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAE 332 (595)
Q Consensus 262 ~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 332 (595)
.+.+++|.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 7777777653 34 23444444444 22223 677777777776654 233222233334667777777777
Q ss_pred HHHHHHHhcC---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 040027 333 ELFGSMESMG---------CKHDDVSYNILINGYCKNKEVEEALSLYREMVSK 376 (595)
Q Consensus 333 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (595)
..++.+.+.. -+.++.++..++......|+ +|.++++++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7777654320 03345555555555555565 666777777665
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.7e-09 Score=98.64 Aligned_cols=82 Identities=7% Similarity=-0.015 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCC--
Q 040027 491 NIMIQGLCNDGQMDKARDLFLDMEENAAAP--DVITFDMLIHGFIRI----------NEPSKVNELLHKMKEKKVMPD-- 556 (595)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-- 556 (595)
..++..|...|++++|+..|+++++..... ....+..++.+|... |++++|...++++.+. .|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 445566666666666666666666542110 234555566666554 6666677777666653 233
Q ss_pred --HHHHHHHHHHHHhcCccc
Q 040027 557 --ASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 557 --~~~~~~l~~~~~~~g~~~ 574 (595)
......+..++.+.|+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 234445555555555555
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=3.6e-10 Score=93.02 Aligned_cols=145 Identities=9% Similarity=-0.072 Sum_probs=117.4
Q ss_pred cccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040027 38 REGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFI 117 (595)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 117 (595)
+..+...|++++|++.|..++..+|. ++..+..+...|.+.|++++|+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-------------------------------~~~~~~~la~~y~~~~~~~~A~~ 52 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-------------------------------KSIKGFYFAKLYYEAKEYDLAKK 52 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-------------------------------HHTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-------------------------------cHHHHHHHHHHHHHcCCHHHHHH
Confidence 34556779999999999999777665 33345567788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHH-HHHHHhcC
Q 040027 118 AFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNL-FEEMANGN 196 (595)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 196 (595)
.|+++++.. +.+..+|..+..+|...|++++|+..|++..+.. +-+..++..+...|...|++++|.+. ++++.+.+
T Consensus 53 ~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 53 YICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999885 5578899999999999999999999999999885 33788899999999999999877665 58888875
Q ss_pred CCCCccccCcHHHHHHHHHHHHHcCC
Q 040027 197 GEIGVVCKPNTVTYSTIIDGLCKEGF 222 (595)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 222 (595)
|.++.+|......+...|+
T Consensus 131 -------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 -------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -------TTCHHHHHHHHHHHHTCCC
T ss_pred -------cCCHHHHHHHHHHHHHhCc
Confidence 5667888887777777764
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=7.2e-09 Score=90.88 Aligned_cols=176 Identities=13% Similarity=-0.032 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC----ChhHHHHHH
Q 040027 114 LGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTG----HTMIALNLF 189 (595)
Q Consensus 114 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 189 (595)
+|+..|+++.+.| ++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677766653 56666777777777777777777777777654 55666666666666 5 677777777
Q ss_pred HHHHhcCCCCCccccCcHHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCC-CCHhHHHHHHHHHHh----cCCHHH
Q 040027 190 EEMANGNGEIGVVCKPNTVTYSTIIDGLCK----EGFVDKAKALFLQMKDENIN-PDVVTYNSLIHGLCH----ANDWNE 260 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~ 260 (595)
++....+ ++.++..|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++
T Consensus 77 ~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 77 EKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7776543 45566666666665 66777777777777665421 015566666666666 666777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 040027 261 AKRLFIEMMDQGVQPSVVTFNVIMDELCKN-R-----KMDEASRLLDLMVQRG 307 (595)
Q Consensus 261 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 307 (595)
|..+|++..+. ..+...+..+..+|... | ++++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777776664 12334455555555432 2 6666666666666654
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.4e-09 Score=85.23 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLC 498 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 498 (595)
.+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.... +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34556666777777777777777777654 4466677777777777777777777777776631 224566777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 499 NDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888877764 445667777778888888888888888877753
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=5.3e-09 Score=84.11 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
.|..++..+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666667777777766666553 3345556666666666666666666666666553 224555566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 178 RTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
..|++++|.+.++++.... +.+...+..++.++...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666666543 33455555566666666666666666665554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=1.2e-09 Score=92.83 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH-H
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING-L 176 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 176 (595)
.+......+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|+..|+++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34456667777788888888887777653 4456677777777777888888888777776653 243333222211 1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHhc
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINP-DVVTYNSLIHGLCHA 255 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 255 (595)
...+...+|+..|++....+ |.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 22233344677777777654 4456777777777777777777777777776654222 244666677777777
Q ss_pred CCHHHHHHHHHHHH
Q 040027 256 NDWNEAKRLFIEMM 269 (595)
Q Consensus 256 ~~~~~A~~~~~~~~ 269 (595)
|+.++|...|++.+
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777776654
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=1.5e-08 Score=88.79 Aligned_cols=173 Identities=12% Similarity=-0.050 Sum_probs=108.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 040027 366 ALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNG----YIIEAVELFR 441 (595)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 441 (595)
|+..|++..+.| +...+..+...+...+++++|...|++..+.+ +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555542 44555555555656666666666666665543 34455555555555 4 6777777777
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHh----cCChhHHHHHH
Q 040027 442 TLRILKCELDIQAYNCLIDGLCK----SGRLKFAWELFCSLPHGVLVPN---VVTYNIMIQGLCN----DGQMDKARDLF 510 (595)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 510 (595)
+..+.+ ++..+..+...|.. .+++++|+..|++..+. .|+ ...+..|...|.. .+++++|+..|
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 766543 55666666666665 66777777777777763 232 5666677777776 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCC
Q 040027 511 LDMEENAAAPDVITFDMLIHGFIRI-N-----EPSKVNELLHKMKEKK 552 (595)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 552 (595)
++..+. +.+...+..+...|... | ++++|..++++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777775 23444566666666543 2 6777888877777765
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=1.3e-08 Score=90.26 Aligned_cols=187 Identities=7% Similarity=-0.030 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCH---hhH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTP--NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNV---ITY 169 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 169 (595)
++..+..++..+.+.|++++|+..|+++++..+.. ...++..+..++.+.|++++|+..|+++.+.... +. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 45667778888999999999999999999874221 1357888899999999999999999999987432 22 245
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHH
Q 040027 170 NTLINGLCR------------------TGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFL 231 (595)
Q Consensus 170 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (595)
..+..++.. .|++++|+..|+++.+.. |.+..++....... .+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKD 144 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHH
Confidence 555555553 678999999999999875 33333333221110 0111
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 040027 232 QMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP--SVVTFNVIMDELCKNRKMDEASRLLDLMVQRG 307 (595)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 307 (595)
.+ ......+...|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 145 ~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11 1112345677888888888888888887752111 12457778888888888888888888887764
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.09 E-value=2.3e-09 Score=111.76 Aligned_cols=173 Identities=9% Similarity=-0.060 Sum_probs=144.8
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 040027 323 CLMGKINRAEELFGSME--------SMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE 394 (595)
Q Consensus 323 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (595)
...|++++|++.++++. +.. +.+...+..+..++...|++++|+..|+++++.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 442 456678888999999999999999999999886444 67788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 040027 395 IHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWEL 474 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 474 (595)
.|++++|...|+++++.. +.+...+..+..++.+.|++++ ...|+++++.+ +.+...+..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998874 5567888889999999999999 99999999876 66888999999999999999999999
Q ss_pred HHhcccCCCCCC-HHHHHHHHHHHHhcCC
Q 040027 475 FCSLPHGVLVPN-VVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 475 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 502 (595)
|+++.+ +.|+ ...+..+..++...++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 999988 5676 5677778888766555
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.09 E-value=1.6e-07 Score=86.25 Aligned_cols=225 Identities=9% Similarity=0.017 Sum_probs=163.0
Q ss_pred HHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH----H
Q 040027 105 CFCKIGR-VSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES--RIMEAAALFTKLKAFGCEPNVITYNTLINGL----C 177 (595)
Q Consensus 105 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 177 (595)
+..+.|. .++|+.+++.++..+ +-+..+|+.--..+...| +++++++.++.++.... -+..+|+.-...+ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH
Confidence 3344454 468999999999986 557788988888888888 99999999999998753 3667777655555 4
Q ss_pred hc---CChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh--HHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 040027 178 RT---GHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD--KAKALFLQMKDENINPDVVTYNSLIHGL 252 (595)
Q Consensus 178 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 252 (595)
.. +++++++..++++.+.+ +.+..+|+.-.-++.+.|.++ ++.+.++++.+.+.. |...|+.-....
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll 190 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLL 190 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45 78999999999999886 678888988888888888888 899999998887543 777887776666
Q ss_pred HhcCC------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 040027 253 CHAND------WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDE-ASRLLDLMVQRG--VRPNACTYNTLMDGFC 323 (595)
Q Consensus 253 ~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 323 (595)
...+. ++++++.+++++...+ -|...|+.....+.+.|+... +..+..++...+ -..+...+..++.+|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 66665 7777777777776533 366677777767766666333 444555544332 1235556666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 040027 324 LMGKINRAEELFGSMES 340 (595)
Q Consensus 324 ~~~~~~~a~~~~~~~~~ 340 (595)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 66677777777766654
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=2.6e-07 Score=84.80 Aligned_cols=217 Identities=8% Similarity=0.007 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HhC---CCHH
Q 040027 294 DEASRLLDLMVQRGVRPNACTYNTLMDGFCLMG--KINRAEELFGSMESMGCKHDDVSYNILINGY----CKN---KEVE 364 (595)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 364 (595)
++|+..++.++..+.. +..+++.-..++...+ ++++++..++.+...+ +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3555555555554222 3334444444444445 5555555555555443 23334444333333 333 4555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 040027 365 EALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVE--HALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY------IIEA 436 (595)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 436 (595)
+++.+++++.+..++ +..+|..-...+...+.++ ++++.++.+++.+ +-+...|+.....+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 555555555554333 4445544444444455444 5555555555543 3344444444444444443 6666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH-HHHHHHHhcccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 437 VELFRTLRILKCELDIQAYNCLIDGLCKSGRLK-FAWELFCSLPHGV--LVPNVVTYNIMIQGLCNDGQMDKARDLFLDM 513 (595)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (595)
++.+++++... +-|...|+.+...+.+.|+.. .+..+..++.+.+ -..+...+..++.+|.+.|+.++|+++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666666655 556666766666666666633 3445555555421 0224556666666666666666666666666
Q ss_pred HH
Q 040027 514 EE 515 (595)
Q Consensus 514 ~~ 515 (595)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=7.5e-09 Score=95.60 Aligned_cols=162 Identities=10% Similarity=0.016 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH-H
Q 040027 414 AADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYN-I 492 (595)
Q Consensus 414 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ 492 (595)
+.+...+..+...+...|++++|...|+++.... +.+...+..++.++...|++++|...++++.. ..|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 4445566667777778888888888888887765 55677788888888888888888888888776 345543322 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 040027 493 MIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD---ASIVSIVVDLLVK 569 (595)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 569 (595)
....+...++.++|+..++++++.. +.+...+..+..+|...|++++|...++++++.. |+ ...+..++.+|..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHH
Confidence 2334556777777888888887764 5567777788888888888888888888888643 32 5677888888888
Q ss_pred cCcccccchHHH
Q 040027 570 NEISLKSLPSFL 581 (595)
Q Consensus 570 ~g~~~~~i~~~~ 581 (595)
.|+.++++..+.
T Consensus 268 ~g~~~~a~~~~r 279 (287)
T 3qou_A 268 LGTGDALASXYR 279 (287)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCCCCcHHHHHH
Confidence 888776665543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=5.6e-09 Score=96.48 Aligned_cols=166 Identities=14% Similarity=0.006 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHH
Q 040027 129 PNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTV 208 (595)
Q Consensus 129 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (595)
.+...+..+...+...|++++|...|+++.... +.+...+..+...+.+.|++++|+..++++.... |+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchH
Confidence 344455556666666666666666666666653 2255566666666666666666666666665543 2322
Q ss_pred -HHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHH
Q 040027 209 -TYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQP-SVVTFNVIMDE 286 (595)
Q Consensus 209 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 286 (595)
........+...++.++|.+.+++..... +.+...+..+...+...|++++|+..|.++++..... +...+..++..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 22222233455566666666666665543 2355666666666666666666666666666642211 14456666666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 040027 287 LCKNRKMDEASRLLDLMV 304 (595)
Q Consensus 287 ~~~~g~~~~a~~~~~~~~ 304 (595)
+...|+.++|...|++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 666666666666666544
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=5.7e-09 Score=88.58 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=77.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcC
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQG-LCNDG 501 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g 501 (595)
....+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.. ..|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhhc
Confidence 3444555566666666665555443 34455555556666666666666666665554 22332222221111 11222
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccccchHH
Q 040027 502 QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~~i~~~ 580 (595)
+..+|+..++++++.. +.+...+..++.++...|++++|...++++++..-.+ +...+..++.++...|+.++++..+
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2334555555555543 3345555556666666666666666666665532111 2345555666666666665444443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=6.4e-09 Score=106.64 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040027 44 VITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRIL 123 (595)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 123 (595)
.|++++|.+.|+++++.+|. +...|..+...+.+.|++++|+..|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 50 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-------------------------------DFVAWLMLADAELGMGDTTAGEMAVQRGL 50 (568)
T ss_dssp -------------------C-------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999998887 34455566677777888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccc
Q 040027 124 RSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVC 203 (595)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (595)
+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.|++..+.+
T Consensus 51 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 121 (568)
T 2vsy_A 51 ALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------- 121 (568)
T ss_dssp TTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 874 4467788888888888888888888888888774 3367788888888888888888888888888765
Q ss_pred cCcHHHHHHHHHHHHHc---CCHhHHHHHHHHHhhCC
Q 040027 204 KPNTVTYSTIIDGLCKE---GFVDKAKALFLQMKDEN 237 (595)
Q Consensus 204 ~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 237 (595)
+.+...+..+..++... |+.++|.+.+++..+.+
T Consensus 122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 45677788888888888 88888888888887764
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=4.7e-08 Score=86.68 Aligned_cols=187 Identities=7% Similarity=-0.079 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH
Q 040027 130 NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP--NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT 207 (595)
Q Consensus 130 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
+...+..+...+.+.|++++|+..|+++....... ....+..++.++...|++++|+..|+++.+.. |.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-------P~~~ 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-------PTHP 75 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCCC
Confidence 45566777788999999999999999999864321 13578889999999999999999999999875 2222
Q ss_pred ---HHHHHHHHHHHH------------------cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 208 ---VTYSTIIDGLCK------------------EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFI 266 (595)
Q Consensus 208 ---~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 266 (595)
.++..+..++.. .|++++|...|+++.+.. +-+...+....... .+..
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~ 144 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKD 144 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHH
Confidence 245555555554 356666666666666542 11222222111100 0000
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040027 267 EMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPN--ACTYNTLMDGFCLMGKINRAEELFGSMESMG 342 (595)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (595)
.+ ......+...+.+.|++++|...|+++++...... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 145 ~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00 01123567789999999999999999998632211 2567889999999999999999999988764
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.7e-08 Score=90.27 Aligned_cols=183 Identities=8% Similarity=-0.082 Sum_probs=112.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCHhhHHHH-------HHHHHcCCCchh----HHhhCCCCC-----------------
Q 040027 43 NVITPNEAFCIFDYMLRMHPSPPPVSSFNIL-------LASLAKNKHYDT----RLNATGLFP----------------- 94 (595)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~----~~~~~~~~~----------------- 94 (595)
..+++..|.+.|.++++.+|. .+..|..+ ...+.+.++..+ .....++.|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 469999999999999999999 99999877 344444444333 111111111
Q ss_pred -----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC--Hh
Q 040027 95 -----NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN--VI 167 (595)
Q Consensus 95 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 167 (595)
-...+..+...+...|++++|..+|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12344556666777777777777777766543 222244445556667777777777776544321 111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccC--cHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 168 TYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKP--NTVTYSTIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
++..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56666677777777777777777766432 112 2345556666677777777777777777664
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=1.7e-08 Score=103.54 Aligned_cols=163 Identities=10% Similarity=-0.033 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040027 360 NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVEL 439 (595)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 439 (595)
.|++++|+..++++.+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999988876433 57788888889999999999999999998874 55678888888999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 040027 440 FRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCND---GQMDKARDLFLDMEE 515 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 515 (595)
++++.+.. +.+...+..+..++...|++++|.+.++++.+. .| +...+..+..++... |++++|.+.++++++
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998876 667888999999999999999999999998873 44 467888888888888 999999999999988
Q ss_pred cCCCCCHHHHHHH
Q 040027 516 NAAAPDVITFDML 528 (595)
Q Consensus 516 ~~~~~~~~~~~~l 528 (595)
.+ +.+...|..+
T Consensus 157 ~~-p~~~~~~~~l 168 (568)
T 2vsy_A 157 QG-VGAVEPFAFL 168 (568)
T ss_dssp HT-CCCSCHHHHT
T ss_pred cC-CcccChHHHh
Confidence 75 3333344433
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=2.4e-08 Score=93.34 Aligned_cols=204 Identities=14% Similarity=0.058 Sum_probs=122.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-CCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 43 NVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAK-NKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGR 121 (595)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 121 (595)
..|++++|.++++++.+..+. . +.+ .++++. -...|..++..|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~--~----------~~~~~~~~~~---------A~~~~~~a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT--S----------FMKWKPDYDS---------AASEYAKAAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--C----------SSSCSCCHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc--c----------ccCCCCCHHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 458899999999999887653 1 011 223222 123466667778888999999888888
Q ss_pred HHhCCCC---C--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC---CC--CHhhHHHHHHHHHhcCChhHHHHHHHH
Q 040027 122 ILRSCFT---P--NAATFNSLIKGLHAESRIMEAAALFTKLKAFGC---EP--NVITYNTLINGLCRTGHTMIALNLFEE 191 (595)
Q Consensus 122 ~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 191 (595)
+...... + -..+|+.+...|...|++++|+..|++....-. .+ ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7764210 0 133667777777888888888888877654311 11 13456666777766 777777777777
Q ss_pred HHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHH
Q 040027 192 MANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE----NINPD-VVTYNSLIHGLCHANDWNEAKRLFI 266 (595)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~ 266 (595)
........+. ......++..+..++...|++++|+..|++.... +..+. ...+..++.++...|++++|...|+
T Consensus 141 Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 141 AAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7653210000 0001345666677777777777777777766542 11011 1244445555556666666666666
Q ss_pred HHH
Q 040027 267 EMM 269 (595)
Q Consensus 267 ~~~ 269 (595)
+.+
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 665
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=6e-09 Score=85.11 Aligned_cols=103 Identities=17% Similarity=0.044 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040027 451 DIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLI 529 (595)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 529 (595)
+...+..+...+.+.|++++|+..|+++.. +.| +...|..+..+|...|++++|+..|+++++.. +.+...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 455666777777778888888888887776 344 46677777777888888888888888887764 44566777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 040027 530 HGFIRINEPSKVNELLHKMKEKKVMPDAS 558 (595)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 558 (595)
.+|...|++++|...|+++++. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 7888888888888888887764 35554
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=7.7e-08 Score=76.08 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...+...+..+.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|++.|++.++.. +.+..+|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567788999999999999999999999885 5688999999999999999999999999999985 4478899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHH
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIID 215 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (595)
+...|++++|++.|++..+.+ |.+..++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-------P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-------PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-------cCCHHHHHHHHH
Confidence 999999999999999999976 456666665544
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=5.8e-08 Score=90.71 Aligned_cols=159 Identities=10% Similarity=0.000 Sum_probs=71.0
Q ss_pred cCChhHHHHHHHHHHhCCC------CCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-----CHhhHHHHH
Q 040027 109 IGRVSLGFIAFGRILRSCF------TPNA----ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-----NVITYNTLI 173 (595)
Q Consensus 109 ~g~~~~A~~~~~~~~~~~~------~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~ 173 (595)
.|++++|..+++++.+... .++. ..|......|...|++++|...|.+........ -..++..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777777665311 1111 123333444555566666666555554321000 123445555
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCC---C--CHhHHHHH
Q 040027 174 NGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENIN---P--DVVTYNSL 248 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l 248 (595)
..|...|++++|+..|++........+. ......++..+..+|.. |++++|+..|++....... + ...++..+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 5555555666655555555432100000 00012344444455544 5555555555544332000 0 02234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 040027 249 IHGLCHANDWNEAKRLFIEMM 269 (595)
Q Consensus 249 l~~~~~~~~~~~A~~~~~~~~ 269 (595)
...|...|++++|+..|++.+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444455555554444443
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=1.2e-07 Score=84.83 Aligned_cols=140 Identities=10% Similarity=-0.051 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHH
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN--VVTYNIMIQG 496 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 496 (595)
....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44456667788888999988888877543 333266666678888999999999998776521 121 2467778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 040027 497 LCNDGQMDKARDLFLDMEENAAAPD--VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIV 563 (595)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 563 (595)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999999999998885432143 346677888889999999999999999874 4665555444
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=7.8e-08 Score=76.06 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHG 531 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (595)
..+...+..|.+.|++++|+..|+++++ +.| +...|..+..+|...|++++|+..++++++.+ +.+...|..++.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4555666666677777777777776665 233 45666666777777777777777777776654 4456666777777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 040027 532 FIRINEPSKVNELLHKMKEKKVMP-DASIVSIVVDL 566 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 566 (595)
|...|++++|.+.|+++++. .| +...+..+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHHHh
Confidence 77777777777777777763 34 45555555443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=6.2e-07 Score=83.09 Aligned_cols=207 Identities=10% Similarity=-0.018 Sum_probs=138.7
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH----
Q 040027 61 HPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTY---NILINCFCKIGRVSLGFIAFGRILRSCF-TPNAA---- 132 (595)
Q Consensus 61 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~---- 132 (595)
+...|+..+...+...+.-.- ..+.......+...+ ...+..+...|++++|...++++.+... .++..
T Consensus 40 g~~~~~~~~l~~i~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 40 GAVYPSMDILQGIAAKLQIPI---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp TSCCCCHHHHHHHHHHHTCCT---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCcCH---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 333366666666665554322 233333333333333 3346778999999999999999988532 12211
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-C----HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcH
Q 040027 133 TFNSLIKGLHAESRIMEAAALFTKLKAFGCEP-N----VITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNT 207 (595)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (595)
.+..+...+...|++++|+..|+++....... + ..+++.++..|...|++++|+..|+++.+.-.......+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 23346666777889999999999998853222 2 236889999999999999999999999842100000012234
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHhhC----CCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 040027 208 VTYSTIIDGLCKEGFVDKAKALFLQMKDE----NINP-DVVTYNSLIHGLCHAN-DWNEAKRLFIEMMD 270 (595)
Q Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~ 270 (595)
.++..+..+|...|++++|...+++..+. +..+ -..+|..+..++.+.| ++++|...|++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 57888999999999999999999887642 2111 2567788888888888 46888888877654
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=1.7e-07 Score=82.18 Aligned_cols=121 Identities=10% Similarity=-0.101 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 040027 424 IDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQM 503 (595)
Q Consensus 424 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 503 (595)
...+...|++++|...++++. +++...+..++.++...|++++|+..|++..... +.+...|..++.+|...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 334444555555555554442 3344555555555555555555555555554421 11344455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPD----------------VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
++|+..|+++.+.. +.+ ...+..++.+|...|++++|...++++.+
T Consensus 88 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555432 111 14455555555556666666666665554
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=6.1e-06 Score=76.49 Aligned_cols=170 Identities=9% Similarity=0.015 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-C-CHHHHHHH
Q 040027 293 MDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMG-KINRAEELFGSMESMGCKHDDVSYNILINGYCKN-K-EVEEALSL 369 (595)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 369 (595)
.++|+++++.++..+.. +..+++.-..++...| .+++++..++.+.... +.+..+|+.-..++... + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555555555554322 3344444444444445 3555555555555543 33444555544444443 4 55555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HH
Q 040027 370 YREMVSKGIKPTVVTYNTLFLGLFEIHQVE--------HALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY-------II 434 (595)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 434 (595)
++++++...+ +..+|+.-...+...+.++ ++++.++++++.+ +-+...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 5555554333 4444443333333332222 4555555555442 3344444444444444443 45
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 040027 435 EAVELFRTLRILKCELDIQAYNCLIDGLCKSGR 467 (595)
Q Consensus 435 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 467 (595)
++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6666666666554 5556666555555554444
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=3.7e-06 Score=77.90 Aligned_cols=184 Identities=7% Similarity=-0.045 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES-RIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
.++.+.......+..++|+.++++++..+ +-+..+|+.--..+...| .++++++.++.++... +-+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34444444455566679999999999986 557788888888888888 5999999999999875 34788888877777
Q ss_pred Hhc-C-ChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHh--------HHHHHHHHHhhCCCCCCHhHHH
Q 040027 177 CRT-G-HTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVD--------KAKALFLQMKDENINPDVVTYN 246 (595)
Q Consensus 177 ~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~ 246 (595)
... + +++++++.++++...+ +.+..+|+.-.-++.+.|.++ ++++.++++.+.++ -|...|+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~ 205 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWG 205 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 776 7 8999999999999876 677888887776666666666 88888888887653 3777888
Q ss_pred HHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 040027 247 SLIHGLCHAND-------WNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRK 292 (595)
Q Consensus 247 ~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 292 (595)
.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|.
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777665 677888887777653 2366667665555555554
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=3.8e-07 Score=79.92 Aligned_cols=136 Identities=11% Similarity=-0.096 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL 176 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (595)
..+..+...+...|++++|+..|+++. .++..+|..+...+...|++++|++.|++..... +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567788899999999999999885 5688899999999999999999999999999875 44788899999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCc---------cccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCC
Q 040027 177 CRTGHTMIALNLFEEMANGNGEIGV---------VCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDEN 237 (595)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 237 (595)
...|++++|++.|+++.+....... ..+.....+..+..++...|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999986521100 011234788889999999999999999999988864
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=9e-07 Score=81.98 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=115.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHHHHH
Q 040027 388 LFLGLFEIHQVEHALKLFDEMQRDGV-AADT----RTYTTFIDGLCKNGYIIEAVELFRTLRILKCE-LD----IQAYNC 457 (595)
Q Consensus 388 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 457 (595)
.+..+...|++++|...+++..+... .++. ..+..+...+...|++++|...++++...... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888887776421 1221 12334555666777888888888888874222 22 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhccc----C-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHH
Q 040027 458 LIDGLCKSGRLKFAWELFCSLPH----G-VLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEEN----AAAPD-VITFD 526 (595)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 526 (595)
++.+|...|++++|+..|+++.+ . +..+. ..++..++.+|...|++++|+..++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999998888773 1 11222 347788899999999999999999988763 21222 57888
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHH
Q 040027 527 MLIHGFIRINE-PSKVNELLHKMKE 550 (595)
Q Consensus 527 ~l~~~~~~~g~-~~~A~~~~~~~~~ 550 (595)
.++.+|...|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999995 6999999998874
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=7.4e-08 Score=81.71 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=100.6
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 37 TREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGF 116 (595)
Q Consensus 37 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (595)
....+...|++++|...|+++++.+|. ++..|..+...+...|++++|+
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~lg~~~~~~~~~~~A~ 64 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQ-------------------------------NSEQWALLGEYYLWQNDYSNSL 64 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCS-------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCC-------------------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 345578889999999999999999987 3445556777778888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--hHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 040027 117 IAFGRILRSCFTPNAATFNSLIKG-LHAESRI--MEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMA 193 (595)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 193 (595)
..|+++.+.. +.+...+..+... +...|++ ++|+..|+++.... +.+...+..+...+...|++++|+..|+++.
T Consensus 65 ~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 65 LAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999988875 4567788888888 7788998 99999999998874 3367888889999999999999999999998
Q ss_pred hcC
Q 040027 194 NGN 196 (595)
Q Consensus 194 ~~~ 196 (595)
...
T Consensus 143 ~~~ 145 (177)
T 2e2e_A 143 DLN 145 (177)
T ss_dssp HTC
T ss_pred hhC
Confidence 865
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=2.1e-07 Score=77.77 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...|..++..+...|++++|...|+++++.. +.+..++..+...+...|++++|++.+++..... +.+..++..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567778888888999999999999988874 4567888888888888999999999999888874 3467788888888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHH--HHHHHHHcCCHhHHHHHHHHHh
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYST--IIDGLCKEGFVDKAKALFLQMK 234 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 234 (595)
+...|++++|...|+++.... +.+...+.. .+..+...|++++|.+.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 889999999999999888765 344555533 3344667788888888777654
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=2.2e-07 Score=77.69 Aligned_cols=128 Identities=8% Similarity=-0.073 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHH
Q 040027 418 RTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQG 496 (595)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 496 (595)
..+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...+++.... .| +...|..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556667777888888888888877765 556777778888888888888888888887763 33 46677778888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHH
Q 040027 497 LCNDGQMDKARDLFLDMEENAAAPDVITFDM--LIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
+...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888888764 344555533 3334667788888888877665
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.77 E-value=1.3e-06 Score=80.85 Aligned_cols=164 Identities=9% Similarity=-0.039 Sum_probs=108.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CcC--HHH
Q 040027 386 NTLFLGLFEIHQVEHALKLFDEMQRDGVAADT------RTYTTFIDGLCKNGYIIEAVELFRTLRILKC---ELD--IQA 454 (595)
Q Consensus 386 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 454 (595)
...+..+...|++++|.+.+.+..+... ... ..+..+...+...|++++|...++++..... .+. ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3344455566666666666665555321 111 1223344556677788888888888765321 111 457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHG-VLVPN-----VVTYNIMIQGLCNDGQMDKARDLFLDMEENA----AAP-DVI 523 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 523 (595)
++.++..|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+..++++++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 788888888888888888888887631 01122 2577888888999999999999998887531 111 156
Q ss_pred HHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 040027 524 TFDMLIHGFIRINEPSKV-NELLHKMKE 550 (595)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 550 (595)
+|..++.+|...|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788889999999999999 777887763
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=2.8e-07 Score=73.59 Aligned_cols=120 Identities=6% Similarity=-0.050 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 93 FPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
+.++..|..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|++.++++.... +.+..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567889999999999999999999999999874 4578889999999999999999999999999875 3478889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEG 221 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 221 (595)
..++...|++++|++.|++..... +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 999999999999999999999875 445667777777776655
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.76 E-value=1.7e-07 Score=74.60 Aligned_cols=120 Identities=9% Similarity=-0.067 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 451 DIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
+...+..++..+...|++++|...++++... .+.+...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3455566666666777777777777766652 12245666667777777777777777777777653 445666677777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCcc
Q 040027 531 GFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEIS 573 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 573 (595)
+|...|++++|..+++++.+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777642 22566677777777766665
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=2e-07 Score=75.99 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCchhHHhhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 040027 71 NILLASLAKNKHYDTRLNATGLFP-NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIME 149 (595)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 149 (595)
..+...+...+.+... ..+.| ++..+..+...+.+.|++++|+..|++++... |.+...|..+..+|...|++++
T Consensus 13 ~~l~~~~~~~~~l~~a---l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 13 TAVIDAINSGATLKDI---NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHTSCCTGGG---CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCCHHHH---hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHH
Confidence 4444444444443321 22233 56778888999999999999999999999885 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 150 AAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 150 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
|+..|+++.+.. +.+...+..+..+|...|++++|+..|+++.+..
T Consensus 89 Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 89 AADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999885 3378889999999999999999999999999865
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=8.5e-08 Score=81.34 Aligned_cols=119 Identities=8% Similarity=-0.008 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHH-HHhcCCh--h
Q 040027 429 KNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQG-LCNDGQM--D 504 (595)
Q Consensus 429 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~--~ 504 (595)
..|++++|...+++..... +.+...+..++.+|...|++++|...|+++... .| +...+..++.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666554 455666666777777777777777777766652 23 45566666666 5566776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
+|+..++++++.. +.+...+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777653 345566666777777777777777777777764
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=6.6e-08 Score=79.04 Aligned_cols=107 Identities=14% Similarity=-0.009 Sum_probs=66.9
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 040027 440 FRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA 518 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 518 (595)
++++.... +.+...+..+...+...|++++|+..|+++.. ..| +...|..+..+|...|++++|+..|++++...
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34444332 33445556666666667777777777776665 233 45666666666777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 519 APDVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+.+...+..++.+|...|++++|...|+++.+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666777777777777777777665
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=4.6e-07 Score=71.27 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...|..++..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6778889999999999999999999999874 4578889999999999999999999999999875 4477888999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHc
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKE 220 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (595)
+...|++++|...|+++.... +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhc
Confidence 999999999999999998875 45566666666665543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1.6e-06 Score=80.32 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCC--HH
Q 040027 349 SYNILINGYCKNKEVEEALSLYREMVSKGIKPTV-----VTYNTLFLGLFEIHQVEHALKLFDEMQRDG---VAAD--TR 418 (595)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~ 418 (595)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455666777888888888888877765322111 123334555677788999999888887531 1122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCc--CHHHHHHHHHHHHhcCChHHHHHHHHhcccC----CCCC-CH
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTLRI---LK-CEL--DIQAYNCLIDGLCKSGRLKFAWELFCSLPHG----VLVP-NV 487 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 487 (595)
+++.+...|...|++++|...++++.+ .. ..+ ...++..++.+|...|++++|+..+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888889999999999999998873 21 111 1258888999999999999999999987652 1111 15
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHHH
Q 040027 488 VTYNIMIQGLCNDGQMDKA-RDLFLDMEE 515 (595)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 515 (595)
.+|..+..+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777887764
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=2.3e-07 Score=74.18 Aligned_cols=119 Identities=6% Similarity=-0.077 Sum_probs=86.3
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDM 527 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 527 (595)
+.+...+..++..+...|++++|...|+++.+. .| +...+..++.++...|++++|+..++++.+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 345666777777778888888888888887763 33 56777777788888888888888888887764 446677777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 528 LIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
++.+|...|++++|.+.++++.+.. +.+...+..+..++.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888888888888888888887642 224566667777766655
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=4.2e-07 Score=72.22 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|++.+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 56778889999999999999999999999874 4578889999999999999999999999999874 346888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFV 223 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 223 (595)
.+...|++++|...|++..... +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999875 45677888888888887764
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=5.8e-08 Score=89.27 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 313 CTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGL 392 (595)
Q Consensus 313 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (595)
..+..++..+...|++++|+..|+++.+.. +.+...+..+..+|.+.|++++|+..++++++..+. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555554432 224444444555555555555555555554443221 334444444444
Q ss_pred HccCCHHHHHHHHHHHH
Q 040027 393 FEIHQVEHALKLFDEMQ 409 (595)
Q Consensus 393 ~~~~~~~~a~~~~~~~~ 409 (595)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444444
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=2.1e-07 Score=85.42 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=109.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 040027 276 SVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYNILIN 355 (595)
Q Consensus 276 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (595)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666777777777777777766653 2256666677777777777777777777776653 445566777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040027 356 GYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIE 435 (595)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 435 (595)
+|...|++++|+..|+++.+..+. +...+...+....+ ..... .+........+.+..+...+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777776654211 00001111111111 11111 12222223334444444333322 2577777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHhccc
Q 040027 436 AVELFRTLRILKCELDIQAYNCLIDGLCKS-GRLKFAWELFCSLPH 480 (595)
Q Consensus 436 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 480 (595)
|.+.++++.+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 877777776553 33344444444444444 567778888877665
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=6.9e-07 Score=70.25 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHG 531 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (595)
...+..++..+...|++++|...++++.... +.+..++..++..+...|++++|+..++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444555555555555555555555555421 1234455555556666666666666666665543 3345555556666
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 532 FIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKN 570 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 570 (595)
|...|++++|..+++++.+.. +.+...+..+..++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 666666666666666665532 22445555555554443
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=1.1e-07 Score=77.77 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY 210 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (595)
...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++...+ |.++..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------IXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHH
Confidence 3344444455555555555555555555443 2244555555555555555555555555555543 3344455
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 211 STIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
..+..++...|++++|.+.|++..+
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555444
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=2e-07 Score=81.04 Aligned_cols=156 Identities=13% Similarity=-0.031 Sum_probs=99.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCCh
Q 040027 394 EIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL----KC-ELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 394 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 468 (595)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666776644444331 1234456666667777777777777777776641 11 22345667777778888888
Q ss_pred HHHHHHHHhcccC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC
Q 040027 469 KFAWELFCSLPHG----VLVP--NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA-APD----VITFDMLIHGFIRINE 537 (595)
Q Consensus 469 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 537 (595)
++|...+++..+. +..| ....+..+...+...|++++|...+++..+... ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776551 1011 134567777888888888888888888764210 112 2345677888888899
Q ss_pred hhHHHHHHHHHHH
Q 040027 538 PSKVNELLHKMKE 550 (595)
Q Consensus 538 ~~~A~~~~~~~~~ 550 (595)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888874
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=5e-07 Score=85.32 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN--------------AATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
+...|..+...+.+.|++++|+..|++++....... ..+|..+..+|.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999988743221 478888888888999999999999988887
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHH-HHHHHHHh
Q 040027 161 GCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKA-KALFLQMK 234 (595)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 234 (595)
. +.+..++..+..+|...|++++|+..|+++.+.. |.+..++..+..++...|+.++| ..+|+.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3477888888888889999999999999888875 55677888888888888888877 44555554
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=3.3e-07 Score=72.59 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC----HHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-VVTYNIMIQGLCNDGQMDKARDLFLDMEENA--AAPD----VITF 525 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~ 525 (595)
..+..++..+.+.|++++|+..|+++++ +.|+ ...|..+..+|...|++++|++.++++++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3455667777777777777777777766 3443 5667777777777777777777777776532 1111 2356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 526 DMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVV 564 (595)
Q Consensus 526 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 564 (595)
..++.++...|++++|.+.|++.++ ..||+.+...+-
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 6677777788888888888888776 346766655443
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=3.5e-05 Score=71.10 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 040027 363 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIH--QVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY-IIEAVEL 439 (595)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 439 (595)
+++++.+++.+....++ +..+|+.-...+...+ ++++++.+++.+.+.+ +-+...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555555555554333 4445544444444444 3556666666655543 4455555555555555555 4566666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhc--------------CChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhc----
Q 040027 440 FRTLRILKCELDIQAYNCLIDGLCKS--------------GRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCND---- 500 (595)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 500 (595)
++++++.+ +-|..+|+.....+... +.++++++.+.+++. ..| |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 66666554 44555555555544443 335666777776665 234 455666555444443
Q ss_pred -------CChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 040027 501 -------GQMDKARDLFLDMEENAAAPDVITFDMLIH---GFIRINEPSKVNELLHKMKEKKVMPD-ASIVSIVV 564 (595)
Q Consensus 501 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 564 (595)
+.++++++.++++.+.. +.+.-++..++. +....|..+++..++.++.+ +.|. ..-|..+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 316 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHH
Confidence 34678888888888863 223223222221 11235677888889998887 4463 34444443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=6.4e-07 Score=84.58 Aligned_cols=129 Identities=13% Similarity=-0.043 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---------------HHHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 040027 417 TRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELD---------------IQAYNCLIDGLCKSGRLKFAWELFCSLPHG 481 (595)
Q Consensus 417 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 481 (595)
...+..+...|.+.|++++|...|++++... +.+ ..++..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555666666666666666666666554 222 577788888888888888888888888773
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHH
Q 040027 482 VLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV-NELLHKMK 549 (595)
Q Consensus 482 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 549 (595)
.| +...|..+..+|...|++++|+..|+++++.. +.+...+..+..++...|++++| ...+++|.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 46778888888888888888888888888864 45677778888888888888877 45666665
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=3.6e-07 Score=79.35 Aligned_cols=161 Identities=12% Similarity=-0.009 Sum_probs=84.0
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCC
Q 040027 143 AESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGF 222 (595)
Q Consensus 143 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 222 (595)
..|++++|.+.++.+... ......++..+...+...|++++|+..+++........+. .+....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCC
Confidence 455666666644333321 1123455556666666666666666666665542110000 12234556666777777777
Q ss_pred HhHHHHHHHHHhhC----CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcC
Q 040027 223 VDKAKALFLQMKDE----NINP--DVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGV-QPS----VVTFNVIMDELCKNR 291 (595)
Q Consensus 223 ~~~A~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g 291 (595)
+++|.+.+++.... +..+ ....+..+...+...|++++|...+++...... ..+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665442 1011 133455666667777777777777766653200 001 122445555666666
Q ss_pred ChHHHHHHHHHHHH
Q 040027 292 KMDEASRLLDLMVQ 305 (595)
Q Consensus 292 ~~~~a~~~~~~~~~ 305 (595)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.65 E-value=2.8e-05 Score=71.70 Aligned_cols=246 Identities=11% Similarity=0.061 Sum_probs=119.4
Q ss_pred hcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 254 HANDWN-EAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRK----------MDEASRLLDLMVQRGVRPNACTYNTLMDGF 322 (595)
Q Consensus 254 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 322 (595)
+.|.+. +|+.++..++..... +..+|+.--.++...+. +++++.+++.+...+.+ +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344443 567777776664211 33344443333332222 34445555555444222 444444444444
Q ss_pred HhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 040027 323 CLMG--KINRAEELFGSMESMGCKHDDVSYNILINGYCKNKE-VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVE 399 (595)
Q Consensus 323 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 399 (595)
...+ .+++++.+++.+.+.. +.+..+|+.-..+....|. ++++++.+.++++..+. +...|+.....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 2445555555554443 3344444444444444444 34555555555444332 4444443333322221000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----------CCh
Q 040027 400 HALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKS-----------GRL 468 (595)
Q Consensus 400 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~ 468 (595)
.+ ...+ . ...+.++++++.+.+++... |.|..+|+-+-..+.+. +.+
T Consensus 197 ~~-------~~~~-~-------------~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------GPQG-R-------------LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp --------------C-------------CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------cccc-c-------------cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 0000 0 00134667777777777665 66777776555555444 346
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGL-----CNDGQMDKARDLFLDMEENAAAPDVITFDMLI 529 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 529 (595)
+++++.++++.+ +.||. .|..+..+. ...|..+++...+.++.+.+ |....-|..+.
T Consensus 255 ~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~ 316 (331)
T 3dss_A 255 QSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHH
Confidence 788888888887 56664 343322222 23567778888888888754 33334444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=8.3e-07 Score=70.18 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
...+..++..+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..++++++.. +.+...+..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 344555566666666677776666666652 33 35666666677777777777777777776654 445666666777
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 040027 531 GFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~~ 550 (595)
++...|++++|...++++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=5.7e-07 Score=71.16 Aligned_cols=105 Identities=9% Similarity=-0.042 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--------HHH
Q 040027 418 RTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN--------VVT 489 (595)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~ 489 (595)
..+..+...+.+.|++++|+..|+++++.. |.+...|..+..+|...|++++|+..+++.++ +.|+ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence 345567777888888888888888888766 56677888888888888888888888888765 2221 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDM 527 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 527 (595)
|..+..++...|++++|++.|++.+.. .|++.....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 667778888888899998888888874 466655443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=6.5e-07 Score=72.56 Aligned_cols=100 Identities=11% Similarity=-0.150 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...+..+...+.+.|++++|+..|++++... +.+...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44566778888999999999999999999885 5588899999999999999999999999999985 347788899999
Q ss_pred HHHhcCChhHHHHHHHHHHhcC
Q 040027 175 GLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
++...|++++|+..|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.7e-06 Score=70.45 Aligned_cols=115 Identities=11% Similarity=-0.021 Sum_probs=83.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF 525 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (595)
.+...+..+...+...|++++|...|++..+ ..|+ ...|..+..+|...|++++|+..++++++.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 4566777777777888888888888888776 4555 5677777788888888888888888887764 4466777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 526 DMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLV 568 (595)
Q Consensus 526 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 568 (595)
..+..+|...|++++|..++++..+.. +.+...+..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHh
Confidence 788888888888888888888888643 224555555555443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.3e-06 Score=68.99 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...|..+...+.+.|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 35678888999999999999999999999885 5578899999999999999999999999999985 347889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 040027 175 GLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~ 195 (595)
++...|++++|+..|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=1.8e-06 Score=67.00 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
...+..++..+...|++++|...+++.... .| +...+..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 345556666667777777777777776653 33 45666677777777777777777777777653 445666777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 531 GFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDL 566 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 566 (595)
++...|++++|.+.+++..+.+ +.+...+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 7777777777777777777643 2244555444443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=1.6e-07 Score=76.23 Aligned_cols=96 Identities=7% Similarity=-0.082 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040027 452 IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIH 530 (595)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 530 (595)
...+..+...+...|++++|+..|+++... .| +...|..+..+|...|++++|+..|+++++.+ +.+...+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 344445555555666666666666665552 33 34555566666666666666666666666553 334455555666
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 040027 531 GFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~~ 550 (595)
+|...|++++|.+.|+++.+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=2.3e-06 Score=66.33 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
++..+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45678889999999999999999999999874 4578889999999999999999999999999875 336888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIID 215 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (595)
++...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-------ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHH
Confidence 9999999999999999999875 445555555443
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=8.1e-07 Score=70.56 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAA--APD----VITFD 526 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 526 (595)
..+..++..+...|++++|...|+++.... +.+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665521 22455566666666666666666666666665421 111 55566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 527 MLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 527 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
.++.+|...|++++|.+.++++.+. .|+......+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 6666777777777777777777663 3555555555554433
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.51 E-value=2.3e-06 Score=68.70 Aligned_cols=102 Identities=10% Similarity=-0.083 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHH
Q 040027 93 FPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTL 172 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 172 (595)
+.++..|..+...+...|++++|+..|++++... +.+...|..+...+...|++++|+..+++..... +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3578889999999999999999999999999885 5578899999999999999999999999999875 3478899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
..++...|++++|+..|+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999998754
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=2.7e-06 Score=70.89 Aligned_cols=95 Identities=13% Similarity=0.000 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040027 453 QAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHG 531 (595)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (595)
..+..+...+...|++++|+..|++.++. .| +...|..+..+|...|++++|+..|+++++.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444444445555555555555554442 22 34444455555555555555555555555443 3334445555555
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 040027 532 FIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 532 ~~~~g~~~~A~~~~~~~~~ 550 (595)
|...|++++|...|+++++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=2.2e-06 Score=85.07 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=97.8
Q ss_pred cccccccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040027 36 TTREGDINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLG 115 (595)
Q Consensus 36 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (595)
..+..+.+.|++++|.+.|+++++.+|. +...|..+..++.+.|++++|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-------------------------------~~~~~~~lg~~~~~~g~~~~A 59 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-------------------------------NAIYYGNRSLAYLRTECYGYA 59 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-------------------------------cHHHHHHHHHHHHHhcCHHHH
Confidence 4566778999999999999999999987 345666777788889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH--HHhcCChhHHHHHHH
Q 040027 116 FIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING--LCRTGHTMIALNLFE 190 (595)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 190 (595)
+..++++++.. +.+..+|..+..+|...|++++|.+.|+++.+... .+...+..+..+ +...|++++|++.++
T Consensus 60 ~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 60 LGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999985 55788899999999999999999999999988742 245566666665 788899999999988
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=2.1e-06 Score=71.49 Aligned_cols=101 Identities=11% Similarity=-0.033 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
.+...|..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++..... +.+...+..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356788889999999999999999999999985 5578899999999999999999999999999985 34788999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC
Q 040027 174 NGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.+|...|++++|+..|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999865
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=2.3e-06 Score=73.89 Aligned_cols=123 Identities=14% Similarity=-0.012 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNA----------------ATFNSLIKGLHAESRIMEAAALFTKLKA 159 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 159 (595)
...+..+...+...|++++|+..|++++..... +. .+|..+..++...|++++|+..+++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445666777788888888888888888876321 22 5566666666666666666666666666
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHH
Q 040027 160 FGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAK 227 (595)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (595)
.. +.+..++..+..++...|++++|+..|++..... +.+...+..+..++...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 53 2355566666666666666666666666666553 334555555555555555444444
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.49 E-value=2e-06 Score=74.33 Aligned_cols=119 Identities=12% Similarity=-0.027 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----------------HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 040027 420 YTTFIDGLCKNGYIIEAVELFRTLRILKCELD----------------IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL 483 (595)
Q Consensus 420 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 483 (595)
+..+...+...|++++|...|+++.... +.+ ..++..+..+|...|++++|+..++++...
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 3344444555555555555555555432 111 144555555555555555555555555542
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040027 484 VP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVN 542 (595)
Q Consensus 484 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (595)
.| +...+..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34455555555555555555555555555542 334444555555555554444443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.7e-06 Score=67.29 Aligned_cols=113 Identities=12% Similarity=-0.026 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN----AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITY 169 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 169 (595)
.+...+..+...+...|++++|+..|+++.+. .|+ ...|..+...+...|++++|+..+++..... +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 47788889999999999999999999999987 445 6788889999999999999999999998874 3367888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHH
Q 040027 170 NTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDG 216 (595)
Q Consensus 170 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (595)
..+..++...|++++|...|++..... +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-------PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHH
Confidence 999999999999999999999999875 4455555544443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=7e-06 Score=65.78 Aligned_cols=98 Identities=12% Similarity=-0.061 Sum_probs=58.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDML 528 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 528 (595)
.+...+..++..+...|++++|...|+++... .| +...|..+..++...|++++|+..++++++.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 34555556666666666666666666665552 23 34556666666666666666666666666653 3345566666
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 040027 529 IHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+.+|...|++++|...++++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=2.3e-06 Score=67.82 Aligned_cols=112 Identities=7% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--CCC----HHHHH
Q 040027 418 RTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL--VPN----VVTYN 491 (595)
Q Consensus 418 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 491 (595)
..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445566667777777888888777777665 55677777777777788888888888777766210 111 56677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGF 532 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (595)
.++.++...|++++|.+.|+++.+. .|+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7788888888888888888888875 34655555554443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=1.7e-06 Score=67.70 Aligned_cols=93 Identities=10% Similarity=-0.108 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
+..++..+.+.|++++|+..|+++++ ..| +...|..+..++...|++++|+..|+++++.. +.+...+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455566677777777777777766 334 45666677777777777777777777777754 445666677777777
Q ss_pred HcCChhHHHHHHHHHHH
Q 040027 534 RINEPSKVNELLHKMKE 550 (595)
Q Consensus 534 ~~g~~~~A~~~~~~~~~ 550 (595)
..|++++|...++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777765
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=2.7e-06 Score=65.23 Aligned_cols=95 Identities=14% Similarity=0.005 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--CHhhHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEP--NVITYNTLING 175 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 175 (595)
.|..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +. +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33334444444444444444444444332 2233333344444444444444444444443331 11 23333333444
Q ss_pred HHhc-CChhHHHHHHHHHHh
Q 040027 176 LCRT-GHTMIALNLFEEMAN 194 (595)
Q Consensus 176 ~~~~-g~~~~A~~~~~~~~~ 194 (595)
+... |++++|++.++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 444444444444433
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=2.8e-06 Score=65.19 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=80.6
Q ss_pred CHhhHHHHHHHHHcCCCchh------HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHH
Q 040027 66 PVSSFNILLASLAKNKHYDT------RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTP--NAATFNSL 137 (595)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 137 (595)
++..|..+...+...|++++ ..... .+.+...|..+...+...|++++|+..++++.+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 67788899999999999988 22222 24578889999999999999999999999999884 44 68889999
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHhcC
Q 040027 138 IKGLHAE-SRIMEAAALFTKLKAFG 161 (595)
Q Consensus 138 ~~~~~~~-g~~~~A~~~~~~~~~~~ 161 (595)
...+... |++++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999999874
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.39 E-value=3.1e-06 Score=66.17 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLC 177 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (595)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667788999999999999999999985 5588899999999999999999999999999985 337889999999999
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 040027 178 RTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~ 196 (595)
..|++++|+..|+++.+.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998764
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=9.6e-06 Score=64.14 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=55.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 040027 457 CLIDGLCKSGRLKFAWELFCSLPHGVLVPN-V---VTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPD---VITFDMLI 529 (595)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 529 (595)
.++..+...|++++|...|+++.+. .|+ . ..+..++.++...|++++|+..|+++++.. +.+ ...+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3445555666666666666666552 232 2 355566666666666666666666666643 222 45566666
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 040027 530 HGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777777766653
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.1e-05 Score=77.44 Aligned_cols=203 Identities=5% Similarity=-0.119 Sum_probs=119.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC-
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPN----------------AATFNSLIKGLHAESRIMEAAALFTKLKAFGCE- 163 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 163 (595)
.-.+.+...|++++|+..|..+++...... ..++..+...|...|++++|.+.+..+...-..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345667888999999999999988642211 124667788888888888888888876653111
Q ss_pred CCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC--C
Q 040027 164 PNV----ITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE--N 237 (595)
Q Consensus 164 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 237 (595)
++. .+...+...+...|++++|..+++.........+. ......++..+...+...|++++|..+++++... +
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12223333444567788888877776543211000 1122456667777777778888887777766542 1
Q ss_pred C---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 040027 238 I---NPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQ--GVQ-P-S--VVTFNVIMDELCKNRKMDEASRLLDLMV 304 (595)
Q Consensus 238 ~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 304 (595)
. +.....+..++..|...|++++|..++++.... ... | . ...+..++..+...|++++|...|.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 112345666667777777777777777665432 111 1 1 1234444555556666666666655554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.6e-05 Score=62.89 Aligned_cols=96 Identities=15% Similarity=-0.041 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC---HhhHHHH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNA---ATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN---VITYNTL 172 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 172 (595)
+..++..+...|++++|+..|+++.+.. +.+. ..+..+..++...|++++|+..|+++...... + ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 4456778899999999999999999874 2233 57888889999999999999999999987432 3 6678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 040027 173 INGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 173 ~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
..++...|++++|+..|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999865
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=3e-06 Score=70.14 Aligned_cols=132 Identities=14% Similarity=-0.002 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCChHHHHHHHHhcccC----CCCC-CHH
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTLRILKCE-LD----IQAYNCLIDGLCKSGRLKFAWELFCSLPHG----VLVP-NVV 488 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 488 (595)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666777777777777766543100 11 235667777778888888888888776541 0001 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEEN----AAAP-DVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.+..+...+...|++++|.+.+++..+. +.++ ...++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778888889999998888887753 1111 134567788888899999999999988875
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=7.1e-06 Score=68.08 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 487 VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|...|++.++. .|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence 4577778888888888888888888888864 556778888888888888888888888888874 454
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=6.3e-06 Score=66.34 Aligned_cols=92 Identities=8% Similarity=-0.104 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCCCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHc------
Q 040027 456 NCLIDGLCKSGRLKFAWELFCSLPHGVLVPN-------------VVTYNIMIQGLCNDGQMDKARDLFLDMEEN------ 516 (595)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 516 (595)
...+..+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344444455555555555555544 2222 237888888888888888888888888875
Q ss_pred -CCCCCHHHH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 517 -AAAPDVITF----DMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 517 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+ +.+...| ...+.++...|++++|+..|++.++
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3345677 8888899999999999999999874
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4.8e-05 Score=74.77 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=110.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 040027 283 IMDELCKNRKMDEASRLLDLMVQRGVRPN----------------ACTYNTLMDGFCLMGKINRAEELFGSMESMGCKH- 345 (595)
Q Consensus 283 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 345 (595)
-.+.+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+.+..+.+.-...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34566778888888888888877532211 1135566777777777777777777665421011
Q ss_pred CH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CC-
Q 040027 346 DD----VSYNILINGYCKNKEVEEALSLYREMVSK----GIKPT-VVTYNTLFLGLFEIHQVEHALKLFDEMQRD--GV- 413 (595)
Q Consensus 346 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 413 (595)
+. .+.+.+...+...|+++.|..+++..... +..+. ..++..+...+...|++++|..++.++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12223333344556677777777665432 11111 335556666677777777777777665542 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcC--HHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 040027 414 --AADTRTYTTFIDGLCKNGYIIEAVELFRTLRIL----KCELD--IQAYNCLIDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 414 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+....++..++..|...|++++|...+++.... +.++. ...+..++..+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111245566666667777777777777665532 11111 23444555555666667777666666654
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=2.2e-06 Score=66.60 Aligned_cols=86 Identities=13% Similarity=-0.033 Sum_probs=59.8
Q ss_pred cCChHHHHHHHHhcccCCC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040027 465 SGRLKFAWELFCSLPHGVL-VP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVN 542 (595)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (595)
.|++++|+..|+++++.+. .| +...+..+..+|...|++++|+..|+++++.. +.+...+..++.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677777778877776321 13 34567777778888888888888888887764 445677777888888888888888
Q ss_pred HHHHHHHHC
Q 040027 543 ELLHKMKEK 551 (595)
Q Consensus 543 ~~~~~~~~~ 551 (595)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887764
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=1.2e-05 Score=76.74 Aligned_cols=119 Identities=13% Similarity=-0.008 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------CCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 040027 420 YTTFIDGLCKNGYIIEAVELFRTLRILK---------------CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLV 484 (595)
Q Consensus 420 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (595)
+..+...+.+.|++++|...|+++++.. .+.+..++..+..+|.+.|++++|+..++++++ +.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--ID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hC
Confidence 4444555666666666666666665410 022334445555555555555555555555554 22
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 040027 485 P-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKV 541 (595)
Q Consensus 485 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 541 (595)
| +...|..+..+|...|++++|+..|+++++.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 23444455555555555555555555555442 22344444444444444444333
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.6e-06 Score=66.25 Aligned_cols=88 Identities=10% Similarity=-0.022 Sum_probs=72.9
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHH
Q 040027 108 KIGRVSLGFIAFGRILRSC--FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIA 185 (595)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 185 (595)
..|++++|+..|+++++.+ -+.+..++..+...|...|++++|++.|+++.+.. +-+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4689999999999999874 23456778899999999999999999999999885 33688899999999999999999
Q ss_pred HHHHHHHHhcC
Q 040027 186 LNLFEEMANGN 196 (595)
Q Consensus 186 ~~~~~~~~~~~ 196 (595)
+..|++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998864
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.3e-05 Score=79.08 Aligned_cols=133 Identities=14% Similarity=0.015 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPN--------------AATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
....|..+...+.+.|++++|+..|+++++...... ..+|..+..+|.+.|++++|+..|++++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345678888999999999999999999998742221 578999999999999999999999999998
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHH-HHHHHhh
Q 040027 161 GCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKA-LFLQMKD 235 (595)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 235 (595)
. +.+..++..+..+|...|++++|+..|+++.+.+ +.+..++..+..++.+.++.+++.+ ++..|..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3478899999999999999999999999999876 5567888889999998888887763 4555543
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.25 E-value=2.8e-06 Score=84.32 Aligned_cols=145 Identities=7% Similarity=-0.088 Sum_probs=100.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChh
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMD 504 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 504 (595)
.+.+.|++++|...++++++.. +.+..++..+..+|.+.|++++|+..++++.+. .| +...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 4556788888888888888765 556788888888888888888888888888873 44 4677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHHCC---C-------CCCHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHG--FIRINEPSKVNELLH-----------KMKEKK---V-------MPDASIVS 561 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~---~-------~p~~~~~~ 561 (595)
+|++.|+++++.. +.+...+..+..+ +.+.|++++|.+.++ +..+.. . ..+...+.
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 8888888888764 3344455555555 777888888888888 333210 0 12345566
Q ss_pred HHHHHHHhcCccc
Q 040027 562 IVVDLLVKNEISL 574 (595)
Q Consensus 562 ~l~~~~~~~g~~~ 574 (595)
.++..+.+.+.+.
T Consensus 171 ~lie~l~~~~~l~ 183 (477)
T 1wao_1 171 ELMQWYKDQKKLH 183 (477)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 6777777777666
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=1e-05 Score=67.13 Aligned_cols=100 Identities=9% Similarity=-0.084 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRS--------C---------FTPNAATFNSLIKGLHAESRIMEAAALFTKLK 158 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 158 (595)
...+...+..+.+.|++++|+..|.+++.. . .+.+..+|..+..+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999999875 1 02234678889999999999999999999999
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 159 AFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
... +.+..++..+..+|...|++++|+..|++....+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 985 4478899999999999999999999999999875
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=7.1e-06 Score=67.85 Aligned_cols=139 Identities=12% Similarity=0.001 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC-CC----
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFT-PN----AATFNSLIKGLHAESRIMEAAALFTKLKAFGCE-PN---- 165 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---- 165 (595)
..++..+...+...|++++|+..++++.+.... .+ ..++..+...+...|++++|.+.+++....... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677888888889999999988888765211 11 135677777888888888888888876653111 11
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 166 VITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
..++..+...+...|++++|.+.+++........+. .......+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666777777788888888877776643200000 011134455566666666676666666666543
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=1.3e-05 Score=76.45 Aligned_cols=124 Identities=10% Similarity=-0.039 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILR----------------SCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKA 159 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 159 (595)
...+..+...+.+.|++++|+..|+++++ .. +.+..+|..+..+|.+.|++++|++.++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34577788899999999999999999987 21 33567888999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHH
Q 040027 160 FGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKA 228 (595)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (595)
.. +.+..++..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 302 ~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 ID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 3478899999999999999999999999999875 4567778888888877777766654
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=0.00011 Score=74.11 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 040027 363 VEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ----------VEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNG- 431 (595)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 431 (595)
.++|++.+++++...+. +...|+.-...+...++ ++++++.++.+.+.+ +.+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34556666666654332 33444444333433333 455555555555442 344445554444455555
Q ss_pred -CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 040027 432 -YIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSG-RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLC 498 (595)
Q Consensus 432 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 498 (595)
++++++..++++.+.+ +.+..+|+.-..++.+.| .++++++.++++++.. .-|...|+.....+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHH
Confidence 4455555555555544 445555555555555555 4555555555555421 113445544444443
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=1.7e-05 Score=78.39 Aligned_cols=127 Identities=13% Similarity=-0.034 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC---------------HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 040027 419 TYTTFIDGLCKNGYIIEAVELFRTLRILKCELD---------------IQAYNCLIDGLCKSGRLKFAWELFCSLPHGVL 483 (595)
Q Consensus 419 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 483 (595)
.+..+...+.+.|++++|...|+++++.. +.+ ..+|..+..+|.+.|++++|+..++++++.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 34444455555555555555555555432 112 467777777788888888888888877763
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHH
Q 040027 484 VP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVN-ELLHKMK 549 (595)
Q Consensus 484 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 549 (595)
.| +...|..+..+|...|++++|+..|+++++.. +.+...+..+..++...|+++++. ..+++|.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 46677777788888888888888888887753 334556677777777777776664 3455554
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.15 E-value=0.00011 Score=74.30 Aligned_cols=174 Identities=10% Similarity=-0.049 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 040027 396 HQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGY----------IIEAVELFRTLRILKCELDIQAYNCLIDGLCKS 465 (595)
Q Consensus 396 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (595)
...++|++.+++++..+ +.+..+|+.-..++...|+ +++++..++.+.+.. +.+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34478899999999874 5566777777777777777 999999999999887 77899999999999999
Q ss_pred C--ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------
Q 040027 466 G--RLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDG-QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRI------- 535 (595)
Q Consensus 466 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 535 (595)
+ +++++++.++++.+.. +-|...|+.-..++.+.| .++++++.+.++++.+ +.|..+|.....++...
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999842 236889999999999999 8999999999999876 56788898888877764
Q ss_pred -------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCcccc
Q 040027 536 -------NEPSKVNELLHKMKEKKVMP-DASIVSIVVDLLVKNEISLK 575 (595)
Q Consensus 536 -------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 575 (595)
+.++++.++++++... .| |...|......+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5579999999999974 35 78999999999999988653
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=7.4e-05 Score=59.73 Aligned_cols=111 Identities=9% Similarity=-0.093 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 040027 431 GYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCN----DGQMDKA 506 (595)
Q Consensus 431 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 506 (595)
+++++|..+|++..+.+ .++.. +...|...+.+++|...|++..+. -+...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777665 33333 566666666677777777777764 256666677777776 6777788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 040027 507 RDLFLDMEENAAAPDVITFDMLIHGFIR----INEPSKVNELLHKMKEKK 552 (595)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 552 (595)
.++|++..+.| +...+..+...|.. .+++++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777764 56667777777777 677788888888877765
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=5.2e-05 Score=61.01 Aligned_cols=95 Identities=15% Similarity=-0.018 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------C-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhc-------C
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEP------N-----VITYNTLINGLCRTGHTMIALNLFEEMANG-------N 196 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 196 (595)
......+.+.|++++|+..|++.++..... + ...|..+..++...|++++|+..+++.+.. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344444555555555555555555542110 1 237888888888888888888888888876 5
Q ss_pred CCCCccccCcHHHH----HHHHHHHHHcCCHhHHHHHHHHHhhC
Q 040027 197 GEIGVVCKPNTVTY----STIIDGLCKEGFVDKAKALFLQMKDE 236 (595)
Q Consensus 197 ~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 236 (595)
|.+...| .....++...|++++|+..|++..+.
T Consensus 95 -------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 -------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4457788 89999999999999999999988763
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.5e-05 Score=60.98 Aligned_cols=92 Identities=5% Similarity=-0.018 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HH
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD-------AS 558 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~ 558 (595)
+...|..+...+...|++++|++.|+++++.. +.+...+..++.+|...|++++|...++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 45677788888888899999999998888864 556788888888888999999999999988874 354 66
Q ss_pred HHHHHHHHHHhcCcccccchHH
Q 040027 559 IVSIVVDLLVKNEISLKSLPSF 580 (595)
Q Consensus 559 ~~~~l~~~~~~~g~~~~~i~~~ 580 (595)
.+..+..++...|+.++++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 7777888888888877555443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=8.5e-06 Score=76.88 Aligned_cols=149 Identities=9% Similarity=-0.003 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLING 175 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (595)
...+..+...+.+.|++++|+..|++++.. .|+... +...++.+++...+ ...++..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345666777777888888888888888775 233221 11222333332211 11366777888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHh
Q 040027 176 LCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHG-LCH 254 (595)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ 254 (595)
|.+.|++++|+..+++++..+ +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+... ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 888888888888888887765 4567778888888888888888888888877653 1234455555544 334
Q ss_pred cCCHHHHHHHHHHHHHC
Q 040027 255 ANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 255 ~~~~~~A~~~~~~~~~~ 271 (595)
.+..+++...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 45667777777777654
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=2.2e-05 Score=74.05 Aligned_cols=149 Identities=10% Similarity=-0.045 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHH
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTY 210 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (595)
...+..+...+.+.|++++|+..|++.... .|+... +...|+..++...+ ...+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------------HHHHH
Confidence 345667777788899999999999998876 333221 22233333333221 12478
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHh
Q 040027 211 STIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDE-LCK 289 (595)
Q Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 289 (595)
..+..++.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|++.++... .+...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHH
Confidence 889999999999999999999998864 34788999999999999999999999999876521 244455555554 344
Q ss_pred cCChHHHHHHHHHHHHC
Q 040027 290 NRKMDEASRLLDLMVQR 306 (595)
Q Consensus 290 ~g~~~~a~~~~~~~~~~ 306 (595)
.+..+.+...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 56778888899988765
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.99 E-value=0.00016 Score=57.78 Aligned_cols=62 Identities=13% Similarity=-0.077 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH----cCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 040027 207 TVTYSTIIDGLCK----EGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH----ANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 207 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~ 271 (595)
+..+..|...|.. .+++++|.++|++..+.| +...+..|...|.. .+++++|..+|++..+.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 3334444444444 344444444444444432 33334444444444 34444444444444443
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=5.2e-05 Score=74.63 Aligned_cols=125 Identities=11% Similarity=-0.026 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----C--CCcCHHHHHHHHHHHHhcCChHHHHHHHHhccc-----CC-CCCC-HHHHH
Q 040027 426 GLCKNGYIIEAVELFRTLRIL-----K--CELDIQAYNCLIDGLCKSGRLKFAWELFCSLPH-----GV-LVPN-VVTYN 491 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~ 491 (595)
.+...|++++|..++++.++. | .+....+++.|+.+|...|++++|+.++++.++ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888777642 1 011245678888888888888888888887654 11 1233 35778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 492 IMIQGLCNDGQMDKARDLFLDMEEN---AAAPD----VITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
.|+..|...|++++|+.+++++++. -+.|+ ..+...+..++...|.+++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999888888652 11223 23446677777888888999988888875
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=1.8e-05 Score=63.54 Aligned_cols=85 Identities=11% Similarity=-0.049 Sum_probs=50.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChH----------HHHHHHHhcccCCCCCC-HHHHHHHHHH
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLK----------FAWELFCSLPHGVLVPN-VVTYNIMIQG 496 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 496 (595)
.+.+.+++|...+++..+.. +.+...|..+..++...++++ +|+..|++.++ +.|+ ...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 44556777777777777766 667777777777777666543 55555555555 3443 3455555555
Q ss_pred HHhcC-----------ChhHHHHHHHHHHH
Q 040027 497 LCNDG-----------QMDKARDLFLDMEE 515 (595)
Q Consensus 497 ~~~~g-----------~~~~A~~~~~~~~~ 515 (595)
|...| ++++|++.|+++++
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 55442 44555555555544
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=9e-06 Score=62.23 Aligned_cols=97 Identities=10% Similarity=0.061 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCC------Hh
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPN------VI 167 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~ 167 (595)
++...|..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|++.+++....... + ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHH
Confidence 356788889999999999999999999999885 557889999999999999999999999999987422 3 55
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 168 TYNTLINGLCRTGHTMIALNLFEEM 192 (595)
Q Consensus 168 ~~~~l~~~~~~~g~~~~A~~~~~~~ 192 (595)
.+..+..++...|+.+.|+..++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 6667777777777777766655443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=0.00013 Score=53.20 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 487 VVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDL 566 (595)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 566 (595)
...+..+...+...|++++|+..++++++.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556666677777777777777777777653 4456667777777777777777777777777642 2246666666666
Q ss_pred HHhcC
Q 040027 567 LVKNE 571 (595)
Q Consensus 567 ~~~~g 571 (595)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=2.2e-05 Score=63.02 Aligned_cols=99 Identities=7% Similarity=-0.066 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040027 465 SGRLKFAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQM----------DKARDLFLDMEENAAAPDVITFDMLIHGFI 533 (595)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (595)
.+.+++|+..+++..+ +.| +...|..+..++...+++ ++|+..|+++++.+ +.+..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445555555555555 233 345555555555554443 35666666665543 334455555555555
Q ss_pred HcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040027 534 RIN-----------EPSKVNELLHKMKEKKVMPDASIVSIVVDLLV 568 (595)
Q Consensus 534 ~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 568 (595)
..| ++++|.+.|+++++ +.|+...|...+....
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 543 55666666666655 3455555544444433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=7.5e-05 Score=57.50 Aligned_cols=78 Identities=8% Similarity=-0.045 Sum_probs=49.9
Q ss_pred HHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040027 470 FAWELFCSLPHGVLVP-NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKM 548 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 548 (595)
.|+..|+++.+. .| +...+..+..+|...|++++|+..|+++++.. +.+...+..++.+|...|++++|...++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355556655552 33 35566666667777777777777777776653 344566666777777777777777777776
Q ss_pred HH
Q 040027 549 KE 550 (595)
Q Consensus 549 ~~ 550 (595)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00012 Score=72.02 Aligned_cols=131 Identities=11% Similarity=-0.049 Sum_probs=89.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC-CCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----C--CCCCHhHHH
Q 040027 175 GLCRTGHTMIALNLFEEMANGNGE-IGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----N--INPDVVTYN 246 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 246 (595)
.+...|++++|+.++++.+..... .|...+....+++.|..+|...|++++|..++++.... | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999988765332 22222334678899999999999999999998886642 2 111245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 247 SLIHGLCHANDWNEAKRLFIEMMDQ-----GVQ-PS-VVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 247 ~ll~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
.|...|...|++++|..++++.++. |.. |+ ..+...+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776542 221 11 22344555566666677777777766654
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=9e-05 Score=55.34 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHH
Q 040027 486 NVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKK-VMPDASIVSIVV 564 (595)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~ 564 (595)
+...+..+..+|...|++++|+..|+++++.. +.+...|..++.+|...|++++|.+.+++.++.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45566666677777777777777777776654 3345566667777777777777777777666431 123555555555
Q ss_pred HHHHhcCc
Q 040027 565 DLLVKNEI 572 (595)
Q Consensus 565 ~~~~~~g~ 572 (595)
..+.+.+.
T Consensus 85 ~~l~~~~~ 92 (100)
T 3ma5_A 85 DAKLKAEG 92 (100)
T ss_dssp HHHHHHHT
T ss_pred HHHHHccc
Confidence 55554443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00022 Score=51.91 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
+...+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|.+.|++..... +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888899999999999999999999875 4577888999999999999999999999998874 336677777777
Q ss_pred HHHhc
Q 040027 175 GLCRT 179 (595)
Q Consensus 175 ~~~~~ 179 (595)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.78 E-value=0.00015 Score=55.77 Aligned_cols=81 Identities=15% Similarity=0.015 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 040027 113 SLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEM 192 (595)
Q Consensus 113 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 192 (595)
+.|+..|+++++.. +.+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778888888775 5578888889999999999999999999998875 336778888999999999999999999988
Q ss_pred Hhc
Q 040027 193 ANG 195 (595)
Q Consensus 193 ~~~ 195 (595)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 208
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.60 E-value=2e-07 Score=87.24 Aligned_cols=423 Identities=12% Similarity=0.078 Sum_probs=239.8
Q ss_pred CHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040027 66 PVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES 145 (595)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 145 (595)
.+..|..+..+..+.++..+....---..|+..|..++.+..+.|.+++-+..+.-+.+.. .++.+=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 5678888888888888777633322223477778888999999999999998888777663 34444467888888888
Q ss_pred CHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhH
Q 040027 146 RIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDK 225 (595)
Q Consensus 146 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (595)
+..+-.+.+ ..|+..-...++.-|...|.++.|.-+|..+.. |..|..++.+.|+++.
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------------CTTTSSSSSSCSGGGS
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------------HHHHHHHHHHHHHHHH
Confidence 865533322 135665667788888888888888777665533 3334555666777776
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 226 AKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 226 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
|.+.-+ +. .++.||..+..+|...+++.-|.-.--.++-. + .....++..|-..|.+++.+.+++....
T Consensus 189 AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 654322 22 26777888888888888877776655555432 1 2233455667777888887777777664
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC------CHHHHHHHHHHHHhCCCHHHHHHHH--------
Q 040027 306 RGVRPNACTYNTLMDGFCLMGKINRAEELFGSMES-MGCKH------DDVSYNILINGYCKNKEVEEALSLY-------- 370 (595)
Q Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~-------- 370 (595)
. -......|+-|.-.|++- +.++..+.++..-. .+++. ....|.-++..|..-.+++.|....
T Consensus 258 l-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw 335 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 335 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHC
T ss_pred C-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhc
Confidence 3 234556677666666654 34444444433211 11111 2234666666666666666554321
Q ss_pred -----HHHHHCCCCCCHHHH---------------HHHHHHHHccCCHHHHHHHHHHHHHC----------CCCCCHHHH
Q 040027 371 -----REMVSKGIKPTVVTY---------------NTLFLGLFEIHQVEHALKLFDEMQRD----------GVAADTRTY 420 (595)
Q Consensus 371 -----~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~ 420 (595)
.+.+.+ ..+...| +.++.++...=|..++.+++++.-.. .-.....+-
T Consensus 336 ~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 336 KEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 413 (624)
T ss_dssp CGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHH
T ss_pred cHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHH
Confidence 000000 1133333 33444444444444444444432110 012234444
Q ss_pred HHHHHHHHhcCCHHHHHHH------------HHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH
Q 040027 421 TTFIDGLCKNGYIIEAVEL------------FRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVV 488 (595)
Q Consensus 421 ~~l~~~~~~~g~~~~A~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 488 (595)
.++-..|....+++.-... -+++.+ .+-..........|.+.++|++++.+.++=.
T Consensus 414 eAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk--------- 481 (624)
T 3lvg_A 414 ESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDS--------- 481 (624)
T ss_dssp HHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC---------
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHhcc---------
Confidence 5555666666666544332 222222 2234444555666777888888776644321
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVN 542 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (595)
.|.-.+......|+.+-|.++++-.++.| +...|...+-.|...=+++.++
T Consensus 482 lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVl 532 (624)
T 3lvg_A 482 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 532 (624)
T ss_dssp CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHH
Confidence 11122333455666666667776666654 4445555555554444444443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.52 E-value=0.00048 Score=51.26 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 040027 95 NLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLK 158 (595)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 158 (595)
++..|..+...+...|++++|+..|+++++.. +.+..+|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555555555443 2234444455555555555555555555444
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.0025 Score=59.02 Aligned_cols=75 Identities=9% Similarity=0.015 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 484 VPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSI 562 (595)
Q Consensus 484 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 562 (595)
+.+..++..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 3456777777777777788888888888888875 67777778888888888888888888888874 577766554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.44 E-value=0.0014 Score=60.64 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 040027 45 ITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLA 78 (595)
Q Consensus 45 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 78 (595)
.++.+|+.+|+++++.+|+ .+..|..+..++.
T Consensus 213 ~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~ 244 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE--FTYARAEKALVDI 244 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 4568999999999999998 7777776666554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.0018 Score=62.53 Aligned_cols=85 Identities=7% Similarity=-0.088 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHhccc---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 040027 465 SGRLKFAWELFCSLPH---GVLVPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEEN-----A-AAPD-VITFDMLIH 530 (595)
Q Consensus 465 ~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~ 530 (595)
.|++++|+.++++.++ .-+.|+ ..+++.++.+|...|++++|+.+++++++. | -.|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666665543 112222 356677777777777777777777777641 2 1122 345677778
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 040027 531 GFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 531 ~~~~~g~~~~A~~~~~~~~ 549 (595)
.|..+|++++|..++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888888887776
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.10 E-value=0.11 Score=46.15 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHhcCCCCCccccC--cHHHHHHHHHHHHHc-----CCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHh
Q 040027 182 TMIALNLFEEMANGNGEIGVVCKP--NTVTYSTIIDGLCKE-----GFVDKAKALFLQMKDENINPDVVTYNSLIHGLCH 254 (595)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 254 (595)
...|...+++..+.+ +. +...|..+...|.+. |+.++|.+.|++....+..-+..++......++.
T Consensus 179 l~~A~a~lerAleLD-------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDLW-------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHC-------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 467888889998876 22 367899999999994 9999999999999986532247778888888888
Q ss_pred -cCCHHHHHHHHHHHHHCCCC--CCHhhHH
Q 040027 255 -ANDWNEAKRLFIEMMDQGVQ--PSVVTFN 281 (595)
Q Consensus 255 -~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 281 (595)
.|+.+++.+.+++.+..... |+....+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 49999999999999987554 4443333
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.07 E-value=0.0055 Score=44.48 Aligned_cols=67 Identities=4% Similarity=-0.056 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 040027 484 VPNVVTYNIMIQGLCNDGQ---MDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK 551 (595)
Q Consensus 484 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 551 (595)
++|+..+..+..++...++ .++|..+++++++.. +.+......++..+...|++++|...|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456677777777654443 678888888888865 556777777888888888888888888888864
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0061 Score=59.02 Aligned_cols=89 Identities=9% Similarity=-0.071 Sum_probs=60.0
Q ss_pred HHHhcCChHHHHHHHHhcccC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCC-HHHHH
Q 040027 461 GLCKSGRLKFAWELFCSLPHG---VLVPN----VVTYNIMIQGLCNDGQMDKARDLFLDMEEN-----A-AAPD-VITFD 526 (595)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 526 (595)
-+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344667777777777776542 12232 346777778888888888888888877642 2 1122 34567
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 040027 527 MLIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 527 ~l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
.++..|...|++++|..+++++.
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 78888888888888888888776
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0074 Score=43.78 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 040027 93 FPNLYTYNILINCFCKIGR---VSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG 161 (595)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (595)
+.|+..+..+..++...++ .++|..+++++++.. +.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777654444 678888888888774 4466677777777778888888888888887763
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0025 Score=61.55 Aligned_cols=93 Identities=4% Similarity=-0.166 Sum_probs=63.5
Q ss_pred hcCChhHHHHHHHHHHhcCCC-CCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----CC-CC-CHhHHHHHH
Q 040027 178 RTGHTMIALNLFEEMANGNGE-IGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----NI-NP-DVVTYNSLI 249 (595)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll 249 (595)
..|++++|+.++++.+..... +|...+....+++.|..+|...|++++|+.++++.... |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888999988887764322 22222333567888888888899999988888876542 21 12 234577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 040027 250 HGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~~~~ 270 (595)
..|...|++++|..+|++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888777654
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.92 E-value=0.0068 Score=44.59 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 494 IQGLCNDGQMDKARDLFLDMEENAAAPDVI-TFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
+..+...|++++|+..++++++.. +.+.. .+..++.+|...|++++|.+.|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555555555555555542 23344 455555555555555555555555554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0059 Score=59.11 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=72.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC-CCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-----C--CCCCHh
Q 040027 172 LINGLCRTGHTMIALNLFEEMANGNGE-IGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-----N--INPDVV 243 (595)
Q Consensus 172 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~ 243 (595)
.+..+...|++++|+.++++....... +|...+....+++.++.+|...|++++|+.+++++... | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999999876432 23223334667889999999999999999999887642 2 111244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 244 TYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 244 ~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
+++.|...|...|++++|..++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577788888888888888888877654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.83 E-value=0.0087 Score=47.43 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=46.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHH
Q 040027 470 FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDG---QMDKARDLFLDMEENAAAP--DVITFDMLIHGFIRINEPSKVNEL 544 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 544 (595)
.+.+.|.+....+. ++..+...+.+++++.+ +.++++.++++..+.+ .| +...+..+.-+|.+.|++++|+++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444433322 45555566666666655 4446666666666643 23 244555566666666666666666
Q ss_pred HHHHHHCCCCCC
Q 040027 545 LHKMKEKKVMPD 556 (595)
Q Consensus 545 ~~~~~~~~~~p~ 556 (595)
++.+++ +.|+
T Consensus 94 ~~~lL~--ieP~ 103 (152)
T 1pc2_A 94 VRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHH--HCTT
T ss_pred HHHHHh--cCCC
Confidence 666665 3454
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.18 Score=41.06 Aligned_cols=129 Identities=9% Similarity=0.088 Sum_probs=80.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChh
Q 040027 104 NCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTM 183 (595)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (595)
......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455678888888877665 2577888888888888888888888887653 345556666777776
Q ss_pred HHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 040027 184 IALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKR 263 (595)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 263 (595)
.-.++-+.....+ -++....++.-.|+++++.++|.+.-+. ... .......|..+.|.+
T Consensus 78 ~L~kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA----~~~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAEGGSL-----PLA----YAVAKANGDEAAASA 136 (177)
T ss_dssp HHHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHH----HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHH----HHHHHHcCcHHHHHH
Confidence 6665555544433 1344455566678888888877554321 111 112223455666666
Q ss_pred HHHHH
Q 040027 264 LFIEM 268 (595)
Q Consensus 264 ~~~~~ 268 (595)
+...+
T Consensus 137 ~~~~~ 141 (177)
T 3mkq_B 137 FLEQA 141 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66554
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.71 E-value=0.017 Score=42.39 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=62.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRSCFTPNAA-TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRT 179 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (595)
..+..+.+.|++++|+..|+++++.. +.+.. .+..+..++...|++++|++.|++..+.... +..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 35667888999999999999999874 44677 8899999999999999999999999987432 3333321
Q ss_pred CChhHHHHHHHHHHh
Q 040027 180 GHTMIALNLFEEMAN 194 (595)
Q Consensus 180 g~~~~A~~~~~~~~~ 194 (595)
+.+.++...|++...
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 344555555554443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.69 E-value=0.013 Score=46.43 Aligned_cols=84 Identities=14% Similarity=-0.034 Sum_probs=69.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhcCCCC--CHhhHHHHHHHHHhcCChhHH
Q 040027 111 RVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAES---RIMEAAALFTKLKAFGCEP--NVITYNTLINGLCRTGHTMIA 185 (595)
Q Consensus 111 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 185 (595)
....+++.|.+..+.+ +++..+...+..++.+.+ ++++++.+++.+.+.+ .| ....+..+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455677777777766 478999999999999988 6679999999999875 23 467788888999999999999
Q ss_pred HHHHHHHHhcC
Q 040027 186 LNLFEEMANGN 196 (595)
Q Consensus 186 ~~~~~~~~~~~ 196 (595)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999975
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.051 Score=57.98 Aligned_cols=41 Identities=17% Similarity=-0.013 Sum_probs=23.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCcc
Q 040027 528 LIHGFIRINEPSKVNELLHKMKEKKVMPDA----SIVSIVVDLLVKNEIS 573 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 573 (595)
.+..|.+.+++++|..+-++ ..|+. .+...+...|...|+.
T Consensus 755 a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 755 AKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccch
Confidence 44445555666666655443 23555 6666666777777764
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.51 E-value=0.027 Score=41.89 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSC------FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG 161 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 161 (595)
.++.-+..++..+...|++..|...|+.+.+.. ..+...++..+..++.+.|+++.|+..++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 466777889999999999999999999988752 13456778889999999999999999999998874
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.15 Score=41.58 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=55.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 428 CKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKAR 507 (595)
Q Consensus 428 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 507 (595)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4566666666665544 2556666666666666777666666666654 233444455556665555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040027 508 DLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHK 547 (595)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (595)
++-+.....| + ++....++...|+++++.+++.+
T Consensus 81 kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444433 1 23333344555666666655543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.037 Score=41.15 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 129 PNAATFNSLIKGLHAESRIMEAAALFTKLKAFG------CEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 129 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.+..-+..+...+.+.|++..|+.+|+...+.- ......++..+..++.+.|+++.|+..++++....
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 456777889999999999999999999987641 12356788999999999999999999999999865
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.34 E-value=0.085 Score=41.17 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhcCCHhHHHHHHHHHHhc
Q 040027 94 PNLYTYNILINCFCKIGRV------SLGFIAFGRILRSCFTPNAA-TFNSLIKG------LHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~~ 160 (595)
-|+.+|-..+...-+.|+. ++.+.+|+++... ++|+.. .|...+.. +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4778888888888888888 8889999999876 355422 12221111 23458999999999999776
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 161 GCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
+ .--..+|......-.+.|+...|.+++......+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3 2237788888888889999999999999999876
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.29 E-value=0.021 Score=50.55 Aligned_cols=80 Identities=14% Similarity=0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhc-----CChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhc-CCh
Q 040027 434 IEAVELFRTLRILKCEL--DIQAYNCLIDGLCKS-----GRLKFAWELFCSLPHGVLVPN--VVTYNIMIQGLCND-GQM 503 (595)
Q Consensus 434 ~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~ 503 (595)
..|...++++++.. +. +...|..++..|... |+.++|.+.|++.++ +.|+ ..++..+...++.. |+.
T Consensus 180 ~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 44555555555443 11 234555555555553 555555555555555 3442 44444445555442 555
Q ss_pred hHHHHHHHHHHHc
Q 040027 504 DKARDLFLDMEEN 516 (595)
Q Consensus 504 ~~A~~~~~~~~~~ 516 (595)
++|.+.+++.+..
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555554
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.07 E-value=0.32 Score=51.77 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 040027 382 VVTYNTLFLGLFEIHQVEHALKLFDEM 408 (595)
Q Consensus 382 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 408 (595)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444444444444444444433
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.93 E-value=0.13 Score=40.11 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhcCCCCCHh-hHHHHHHH------HHhcCChhHHHHHHHHHHh
Q 040027 128 TPNAATFNSLIKGLHAESRI------MEAAALFTKLKAFGCEPNVI-TYNTLING------LCRTGHTMIALNLFEEMAN 194 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 194 (595)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...+.. +...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56888888888888888888 8888999988875 455421 11111111 1234677777777777765
Q ss_pred cCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCC
Q 040027 195 GNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENIN 239 (595)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 239 (595)
.. -.. ...|......-.++|++..|.+++......+.+
T Consensus 89 ~h------KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NC------KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HC------TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred Hh------HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 43 122 666777777777777777777777777776544
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.71 E-value=2.6 Score=44.47 Aligned_cols=314 Identities=10% Similarity=-0.028 Sum_probs=170.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------CCCHH--HHHHH
Q 040027 250 HGLCHANDWNEAKRLFIEMMDQGVQPSVV--TFNVIMDELCKNRKMDEASRLLDLMVQRGV-------RPNAC--TYNTL 318 (595)
Q Consensus 250 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l 318 (595)
-+....|+.++++.++...+..+...+.. .-..+.-.....|..+++..++...+...- .+... ....|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667888888888877665421111222 222233345566666677777776665321 01111 12233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHc
Q 040027 319 MDGFCLMGKINRAEELFGSMESMGCKHDDV--SYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNT--LFLGLFE 394 (595)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~ 394 (595)
..+|...++ +++.+.+..+.... ..... .-..+...+.-.|+.+....++..+.+.. +...... +.-++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333344444 45556666655432 11111 12233444556788887778887777642 2233333 3334557
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHH
Q 040027 395 IHQVEHALKLFDEMQRDGVAADTRTY--TTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAW 472 (595)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (595)
.|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 889899988888887641 2222211 233446778899888888998888632 223333333334455578888888
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChh----HHHHHH
Q 040027 473 ELFCSLPHGVLVPNVVTYNIMIQGLCNDGQM-DKARDLFLDMEENAAAPDVITFDMLIHGFIR--INEPS----KVNELL 545 (595)
Q Consensus 473 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~----~A~~~~ 545 (595)
++++.+.+.+ .|....-..+..+....|.. .++++.+..+... ++..+-...+.++.. .|..+ +..++.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 8888777642 44444444444555555554 5788888888753 454444333333333 33222 344444
Q ss_pred HHHHHC----CCCCCHHHHHHHHHHHHhcCccc
Q 040027 546 HKMKEK----KVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 546 ~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.+.+. .-.++...-..+...+..+|.-.
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 443321 22344566667777777777654
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.68 E-value=0.046 Score=41.55 Aligned_cols=65 Identities=14% Similarity=-0.000 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040027 485 PNVVTYNIMIQGLCNDGQMDK---ARDLFLDMEENAAAP--DVITFDMLIHGFIRINEPSKVNELLHKMKE 550 (595)
Q Consensus 485 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 550 (595)
|+..+-..+++++.+..+... ++.+++.....+ .| .......+.-++.+.|+|++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445544443333 444444444432 12 223334444455555555555555555554
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.47 E-value=0.0076 Score=57.16 Aligned_cols=386 Identities=10% Similarity=0.043 Sum_probs=220.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchh-HHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040027 43 NVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDT-RLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFGR 121 (595)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 121 (595)
+.|.+++-++++.-+.+. .. ++..=+.|+-+|++.++..+ +-...| ||..-...++.-|...|.++.|.-+|..
T Consensus 95 ~~~~~edLv~yL~MaRk~-~k--e~~IDteLi~ayAk~~rL~elEefl~~--~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 95 TSGNWEELVKYLQMARKK-AR--ESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp TSSCCTTHHHHHHTTSTT-CC--STTTTHHHHHHHHTSCSSSTTTSTTSC--CSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred hCCCHHHHHHHHHHHHHH-hc--ccccHHHHHHHHHhhCcHHHHHHHHcC--CCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 456777776666555443 22 56667788889999998876 222222 5555556677778888888877777665
Q ss_pred HHhCC--------------------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 040027 122 ILRSC--------------------FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGH 181 (595)
Q Consensus 122 ~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (595)
+..-. -..++.+|..+-.+|...+.+.-|.-.--.++-. +.-...++..|...|.
T Consensus 170 isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~ 244 (624)
T 3lvg_A 170 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGY 244 (624)
T ss_dssp SCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCC
Confidence 32210 1346778999989999998888777655555432 2223456777888999
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC-CCCC------CHhHHHHHHHHHHh
Q 040027 182 TMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE-NINP------DVVTYNSLIHGLCH 254 (595)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~ll~~~~~ 254 (595)
+++-+.+++...... ......|+-|.-.|++- ++++..+-++..-.+ +++- ....|.-+.-.|.+
T Consensus 245 f~ELIsLlEaglglE-------rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 245 FEELITMLEAALGLE-------RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp CTTSTTTHHHHTTST-------TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc
Confidence 999999999988654 35677888888888776 455555544433222 2221 24457778888888
Q ss_pred cCCHHHHHHHHH-------------HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040027 255 ANDWNEAKRLFI-------------EMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDG 321 (595)
Q Consensus 255 ~~~~~~A~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (595)
-.+++.|....- +++. -..+...|...+..|.... +...-+++.-+..+ +.++ ..++.
T Consensus 317 ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~pr-lDh~-----RvV~~ 387 (624)
T 3lvg_A 317 YEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK-PLLLNDLLMVLSPR-LDHT-----RAVNY 387 (624)
T ss_dssp HTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCTT-CCST-----TTHHH
T ss_pred chhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhC-hHHHHHHHHhcccc-CChH-----HHHHH
Confidence 888887654321 1111 1234555555555554432 22222222222211 1111 12344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCHHHH------------HHHHHHHHHCCCCCCHHHHHH-H
Q 040027 322 FCLMGKINRAEELFGSMESMGCKHDDVSYNILINGYCKNKEVEEA------------LSLYREMVSKGIKPTVVTYNT-L 388 (595)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------------~~~~~~~~~~~~~~~~~~~~~-l 388 (595)
+.+.|++.-....+...... .+...-.++-..|....+++.- +.+-+++.+. ...-+.. .
T Consensus 388 ~~k~~~LpLIkpYL~~Vq~~---N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~eFRrIA 460 (624)
T 3lvg_A 388 FSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIA 460 (624)
T ss_dssp HHTTTCGGGGTGGGTSCCCS---CCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHHHHHHH
T ss_pred HHhcCCchhhHHHHHHHHHh---hHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHHHHHHH
Confidence 44555555444444333322 2333344444555555554432 2333444443 2233333 3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh
Q 040027 389 FLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL 468 (595)
Q Consensus 389 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 468 (595)
...|.+.++|++++.+.++ ...|...|......|+.+-|.++++-..+.| +...|.+.+..|...=++
T Consensus 461 A~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrp 528 (624)
T 3lvg_A 461 AYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRP 528 (624)
T ss_dssp HHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSC
T ss_pred HHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccCh
Confidence 3456667777777654321 1223334444556777777777777777655 455666666677666777
Q ss_pred HHHHHH
Q 040027 469 KFAWEL 474 (595)
Q Consensus 469 ~~A~~~ 474 (595)
+-++++
T Consensus 529 DvVlEl 534 (624)
T 3lvg_A 529 DVVLET 534 (624)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777666
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.34 E-value=0.14 Score=39.00 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=70.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHhcCCC-CCHhhHHHHHHHHHhc
Q 040027 104 NCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIME---AAALFTKLKAFGCE-PNVITYNTLINGLCRT 179 (595)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 179 (595)
..-........+...|.+....| .++..+-..+..++.+.++... ++.+++.+...+.+ ........|..++.+.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 33334445566677777776655 4788888889999998877766 89999998886411 2455667788899999
Q ss_pred CChhHHHHHHHHHHhcC
Q 040027 180 GHTMIALNLFEEMANGN 196 (595)
Q Consensus 180 g~~~~A~~~~~~~~~~~ 196 (595)
|++++|.+.++.+++..
T Consensus 88 g~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTE 104 (126)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999999975
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.58 E-value=1.1 Score=34.15 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 040027 489 TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKK 552 (595)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 552 (595)
.+...+......|+.++-.+++..++.. .+|++.....+..+|.+.|+..+|.++++++-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444455555555555555554332 24455555555555555555555555555555555
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.48 E-value=0.25 Score=47.02 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 040027 490 YNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMK-----EKKVMPDASIVSIVV 564 (595)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~l~ 564 (595)
...++.++...|++++|+..+..+.... +-+...+..++.+|.+.|+..+|++.|+++. +.|+.|++.+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445566677788888877777777664 5567777778888888888888877777765 347778777766665
Q ss_pred HHHHh
Q 040027 565 DLLVK 569 (595)
Q Consensus 565 ~~~~~ 569 (595)
.++..
T Consensus 253 ~il~~ 257 (388)
T 2ff4_A 253 RILRQ 257 (388)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55544
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.21 E-value=1.5 Score=33.92 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 484 VPNVVTYNIMIQGLCNDGQM---DKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 484 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
.|+..+-..+.+++.+..+. .+++.+++.....+....-.....+.-++.+.|+|++|+++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 46677767777777776544 46777888877754222345566677788888888888888888887 4575
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.18 E-value=10 Score=40.17 Aligned_cols=274 Identities=9% Similarity=-0.000 Sum_probs=146.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHH
Q 040027 286 ELCKNRKMDEASRLLDLMVQRGVRPNA--CTYNTLMDGFCLMGKINRAEELFGSMESMGC-------KHDDVSYNILING 356 (595)
Q Consensus 286 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 356 (595)
+....|+.++++.+++.....+...+. ..-..+.-.....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667777777777665542101122 2222333344555655667777776654311 0111112222223
Q ss_pred HHhCCC-HHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 040027 357 YCKNKE-VEEALSLYREMVSKGIKPTVV----TYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFIDG--LCK 429 (595)
Q Consensus 357 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 429 (595)
..-.|. -+++.+.+..++... +.. .-..+...+...|+.+....++..+.+. .+..+...+..+ +..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 333332 245666666666532 221 1122333455678888888888777654 233444444433 446
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 040027 430 NGYIIEAVELFRTLRILKCELDIQAY--NCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKAR 507 (595)
Q Consensus 430 ~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 507 (595)
.|+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+... ...++.-...+..++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888877632 2222222 23445667888888777788888763 1223333344445555677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 508 DLFLDMEENAAAPDVITFDMLIHGFIRINEP-SKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
+++..+.+.+ .|....-..+.-+....|+. .++...+..+.. .+|..+-..-+.++..-|
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 7777666543 33332223333333444544 678888888873 567766665555555533
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.14 E-value=0.55 Score=35.83 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 484 VPNVVTYNIMIQGLCNDGQM---DKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 484 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
.|+..+--.+++++.+..+. .+++.++++....+.......+..+.-++.+.|++++|+++.+.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 45666666666777665543 45677777777654112345566677777788888888888887776 4564
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.96 E-value=1.6 Score=41.47 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cCCCCCHhhHHH
Q 040027 98 TYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKA-----FGCEPNVITYNT 171 (595)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 171 (595)
....++..+...|++.+++..+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ .|++|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34567778889999999999999998774 66888999999999999999999999998754 588888766443
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.43 E-value=0.84 Score=36.46 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcC---------
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSC-FTPNA-------ATFNSLIKGLHAESRIMEAAALFTKLKAFG--------- 161 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 161 (595)
+..=+..+...|.++.|+.+.+.++... ..++. .++..+..++...|++.+|...|++.+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344556777788888887777755431 12221 245556677788888888888887753210
Q ss_pred ---------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 162 ---------------CEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 162 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
...+.+....+..+|...|++++|+.+++.+....
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 11123455678889999999999999999886543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.83 Score=47.09 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-CHhHHHHHHHHHHhc------CCC-CCH-
Q 040027 99 YNILINCFCKIGR-VSLGFIAFGRILRSCFTPNAATF--NSLIKGLHAES-RIMEAAALFTKLKAF------GCE-PNV- 166 (595)
Q Consensus 99 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~-~~~- 166 (595)
-..++..+...|+ .+.|+.+|+++.+.. |...++ ..++..+.+.+ +--+|++++.+..+. ..+ .+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455666666666 578999999998873 433332 22333332222 223455555444321 111 111
Q ss_pred ---------hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHh
Q 040027 167 ---------ITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMK 234 (595)
Q Consensus 167 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 234 (595)
.....-...+...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122233455667899999999999998864 5668999999999999999999999888875
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=10 Score=36.63 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040027 291 RKMDEASRLLDLMVQR-----GVRPNACTYNTLMDGFCLMGKINRAEELFGSMES 340 (595)
Q Consensus 291 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 340 (595)
|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777666555432 2333455666677777777777777666655543
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.56 E-value=1.5 Score=45.26 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 040027 519 APDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEI 572 (595)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 572 (595)
+.+..-|..|+....+.+++++|.+.|+..+. .+.++..+..|++.|.+.+.
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~~ 661 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPPK 661 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCCS
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcCc
Confidence 34566688888888999999999999999996 46899999999999988763
No 246
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.46 E-value=3.8 Score=31.38 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIA 185 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 185 (595)
+.-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+. + |. ...|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHH
Confidence 34457777777777776664 24555666665555555555555555554332 1 11 124444444
Q ss_pred HHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040027 186 LNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWNEAKRLF 265 (595)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 265 (595)
...+-.+- .+....+..+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++
T Consensus 81 i~C~~~~n-----------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 81 VECGVINN-----------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHTT-----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhc-----------chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 44443322 23455566667777777777777777775442 3566777777777777777777777777
Q ss_pred HHHHHCCCC
Q 040027 266 IEMMDQGVQ 274 (595)
Q Consensus 266 ~~~~~~~~~ 274 (595)
.+.-+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 777776654
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.06 E-value=8.6 Score=34.75 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHhcCCHhHHHHH----HHHHHhcCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCCccccCcHHHHHHHHH
Q 040027 141 LHAESRIMEAAAL----FTKLKAFGCEPNVITYNTLINGLCRTGHTM-IALNLFEEMANGNGEIGVVCKPNTVTYSTIID 215 (595)
Q Consensus 141 ~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (595)
+.+.|+...|.++ .+.+.+.+.+++......++..+......+ .-.+.++.+.+...+.+....-++.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 4555666555543 444455566777777676766665433211 22344444443221111101235666777777
Q ss_pred HHHHcCCHhHHHHHH
Q 040027 216 GLCKEGFVDKAKALF 230 (595)
Q Consensus 216 ~~~~~g~~~~A~~~~ 230 (595)
.|.+.|++.+|+.-|
T Consensus 143 ~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 143 KLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHhhcCCHHHHHHHH
Confidence 777777777776655
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.64 E-value=4.6 Score=44.67 Aligned_cols=147 Identities=13% Similarity=-0.044 Sum_probs=95.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccC----CC---------------
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHG----VL--------------- 483 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--------------- 483 (595)
++..+...+..+.+.++..-. +.++...-.++.++...|++++|...|.+.... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455556555554433211 334444445566677777777777777665321 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 040027 484 ---VPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDV----ITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPD 556 (595)
Q Consensus 484 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 556 (595)
..-..-|..++..+.+.|.++.++++-+.+++...+.+. ..|..+...+...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 001234566777888889999999988888775322222 256778888899999999999998887643 34
Q ss_pred HHHHHHHHHHHHhcCccccc
Q 040027 557 ASIVSIVVDLLVKNEISLKS 576 (595)
Q Consensus 557 ~~~~~~l~~~~~~~g~~~~~ 576 (595)
...+..++..++..|..+++
T Consensus 971 ~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhCCChhhh
Confidence 67888888888888887733
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.87 E-value=2 Score=34.37 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040027 134 FNSLIKGLHAESRIMEAAALFTKLKAFG-CEPNV-------ITYNTLINGLCRTGHTMIALNLFEEMANG 195 (595)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 195 (595)
+..-+..+...|.++.|+-+.+.+.... ..++. .++..+..++...|++..|...|++.++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4455677888999999998888766542 12331 25567788899999999999999997643
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.80 E-value=3.6 Score=29.52 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 469 KFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 469 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
=+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++|+-...+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555555555556667777777777777777777777777666654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.51 E-value=12 Score=41.31 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040027 283 IMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 283 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
++..+...+.++.+.++...+ +.++.....++.++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344445555555554433221 223334445666777777777777777654
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.10 E-value=13 Score=33.86 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH----HHHHhcCCCCCHhhHHHHHH
Q 040027 99 YNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALF----TKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~ 174 (595)
+.++..=|.+.+++++|+.++-.-. ..+.+.|+...|.++- +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344444555555555555443322 2344555555544433 44455566677666666666
Q ss_pred HHHhcCChh-HHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHH
Q 040027 175 GLCRTGHTM-IALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALF 230 (595)
Q Consensus 175 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (595)
.+......+ .-.++++++..+..+.+....-++.....+...|.+.+++.+|+.-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 655443211 11223333332211111001224556666667777777777766655
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.99 E-value=4.9 Score=28.82 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=57.5
Q ss_pred HHHHHHHHHhc-C-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 490 YNIMIQGLCND-G-QMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 490 ~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
|..--..|... . |.-+..+-++.+...++-|++.+....+.+|.+.+++.-|.++++-.+.+ ......+|..+++-+
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 33333444433 3 45567778888888889999999999999999999999999999999864 234456777776643
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.10 E-value=7.3 Score=29.74 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 126 CFTPNAATFNSLIKGLHAESRI---MEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 126 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
+..|++.+-..+..++.+..+. .+++.+++.+.+.+.......+..|..++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3467788877888888876654 4688899998887533346677788888999999999999999999865
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.28 E-value=22 Score=34.29 Aligned_cols=193 Identities=10% Similarity=0.098 Sum_probs=109.0
Q ss_pred CChhHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHH----HhcC
Q 040027 110 GRVSLGFIAFGRILRS-----CFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGL----CRTG 180 (595)
Q Consensus 110 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 180 (595)
|+++.|+..+-.+.+. ...........++..|...|+++...+.+..+....-. -......++..+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 5677777666555432 22344666778888888889988887777666544212 122223333322 2222
Q ss_pred ChhH--HHHHHHHHHhcCCCCCcc-cc-CcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhC--CCCCC---HhHHHHHHHH
Q 040027 181 HTMI--ALNLFEEMANGNGEIGVV-CK-PNTVTYSTIIDGLCKEGFVDKAKALFLQMKDE--NINPD---VVTYNSLIHG 251 (595)
Q Consensus 181 ~~~~--A~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~ll~~ 251 (595)
..+. -..+.+...... .+.. +. ........|...+...|++.+|.+++..+... +.... ...+...++.
T Consensus 109 ~~d~~~~~~~i~~l~~vt--e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVT--ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHHHHHHHHCCSSSS--SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2221 122222211110 0000 00 02334466788888899999999998887643 21111 3456666788
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040027 252 LCHANDWNEAKRLFIEMMD----QGVQPS--VVTFNVIMDELCKNRKMDEASRLLDLMVQ 305 (595)
Q Consensus 252 ~~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 305 (595)
|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|-..|.++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888999888888877642 111222 12445566677778888888777776654
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.20 E-value=17 Score=31.85 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=31.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
..+.|++++++......++.. |.|...-..++..++-.|++++|.+-++.+.+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445566666666666655553 445555555556666666666666655555554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.81 E-value=8.2 Score=29.40 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=25.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 040027 470 FAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEEN 516 (595)
Q Consensus 470 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (595)
+..+-++.+....+.|++.+....+.+|.+.+|+.-|+++|+-...+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444444445555555555555555555555555555555544
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.80 E-value=8.2 Score=29.40 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 505 KARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 505 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
+..+-++.+...++-|++.+....+.+|.+.+++.-|.++++-.+.+ ..+...+|..+++-+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44555566666666777777777777777777777777777777643 234455566655543
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.38 E-value=18 Score=31.59 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=72.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH----HHHHHHHHHHhcC
Q 040027 426 GLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVV----TYNIMIQGLCNDG 501 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 501 (595)
...+.|++++|+.....-++.. |.|......+++.++-.|+++.|..-++.+.+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH-----
Confidence 4567788888888888888776 77888888888999999999999888888877 455533 33333332
Q ss_pred ChhHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHH--HcCChhHHHHHHHHHHH
Q 040027 502 QMDKARDLFLDMEENAAA-----PDVITFDMLIHGFI--RINEPSKVNELLHKMKE 550 (595)
Q Consensus 502 ~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 550 (595)
+..=.+...-+-. ....-...++.+.. ..|+.++|..+-.++.+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111222221111 12233344444443 56899999988888875
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.32 E-value=22 Score=32.42 Aligned_cols=81 Identities=6% Similarity=-0.022 Sum_probs=48.5
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HH
Q 040027 449 ELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF-DM 527 (595)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ 527 (595)
.-|+.....+...|.+.+++.+|...|- .. -.+....+..++.-+...+...+ ...| ..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg--~~~s~~~~a~mL~ew~~~~~~~e----------------~dlfiaR 192 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LG--TKESPEVLARMEYEWYKQDESHT----------------APLYCAR 192 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS--CTTHHHHHHHHHHHHHHTSCGGG----------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hc--CCchHHHHHHHHHHHHHhcCCcc----------------HHHHHHH
Confidence 3467788888899999999999888873 21 23334666555554444332221 1212 22
Q ss_pred HHHHHHHcCChhHHHHHHHHHH
Q 040027 528 LIHGFIRINEPSKVNELLHKMK 549 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~ 549 (595)
.+--|.-.++...|..+++...
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334566677777777666555
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.86 E-value=12 Score=29.01 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 128 TPNAATFNSLIKGLHAESRI---MEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 128 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.++..+-..+..++.+..+. .+++.+++.+...+..........|..++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 57777777888888876654 4688889988886544456667778888999999999999999999865
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.42 E-value=16 Score=30.24 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=43.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 040027 500 DGQMDKARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSI 562 (595)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 562 (595)
.+...++.++|..|...|+.-. ...|...+..+...|++++|.++|+.-++.+-+|-...-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 3346677788888877765544 45566777777778888888888888887777775444433
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.05 E-value=8.6 Score=36.93 Aligned_cols=100 Identities=8% Similarity=-0.062 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCCHhhHH---
Q 040027 97 YTYNILINCFCKIGRVSLGFIAFGRILRSC--FTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFG-CEPNVITYN--- 170 (595)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~--- 170 (595)
.++..++..|.+.|+++.|.+.|.++.... ...-...+..+++.+...+++..+...+.++...- -.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456789999999999999999999988753 23446678888999999999999999998876531 112222221
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 171 -TLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 171 -~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
.-+..+...+++..|.+.|-++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 22333446789999988888776543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.60 E-value=32 Score=32.29 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 040027 279 TFNVIMDELCKNRKMDEASRLLDLM 303 (595)
Q Consensus 279 ~~~~l~~~~~~~g~~~~a~~~~~~~ 303 (595)
....+...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445556666666666666655544
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=79.02 E-value=23 Score=28.30 Aligned_cols=66 Identities=8% Similarity=0.107 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040027 504 DKARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVK 569 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 569 (595)
+.+.++|..|...|+.-. ...|...+..+...|++.+|.++|+.-++.+-+|-...-...-....|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQAR 143 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 346778888888776554 456677777788888888888888888888777766655554444444
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.77 E-value=28 Score=29.09 Aligned_cols=140 Identities=15% Similarity=0.044 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 040027 416 DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQ 495 (595)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 495 (595)
+...-...+.++...+..+ +...+..+.. .++.......+.++.+.++.+. ...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444444555444422 2222223322 4455555566666666665433 333333332 345555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040027 496 GLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNE 571 (595)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 571 (595)
++...|+. ++...+..+.+ .++...-...+.++...+. .++...+.++.+ .++..+-.....++.+.+
T Consensus 135 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 135 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC--
T ss_pred HHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcC
Confidence 66555553 34444444443 3455555556666666664 455555555554 245666666666665544
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.23 E-value=39 Score=30.50 Aligned_cols=27 Identities=19% Similarity=-0.059 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHH
Q 040027 450 LDIQAYNCLIDGLCKSGRLKFAWELFC 476 (595)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (595)
-++.....+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467777778888888888888777664
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.81 E-value=18 Score=34.76 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHH--HH
Q 040027 279 TFNVIMDELCKNRKMDEASRLLDLMVQR--GVRPNACTYNTLMDGFCLMGKINRAEELFGSMESM---GCKHDDVS--YN 351 (595)
Q Consensus 279 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 351 (595)
+...++..|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455556666666666666666665543 22223344555566666666666666666665322 11111111 01
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 040027 352 ILINGYCKNKEVEEALSLYREMVS 375 (595)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~ 375 (595)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223346677777777766554
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.23 E-value=52 Score=30.91 Aligned_cols=92 Identities=11% Similarity=-0.083 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHH---
Q 040027 247 SLIHGLCHANDWNEAKRLFIEMMDQGVQPS-----VVTFNVIMDELCKNRKMDEASRLLDLMVQR--GVRPNACTYN--- 316 (595)
Q Consensus 247 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~--- 316 (595)
.|+..|...|++.+|..++..+.+.-...| ...+..-+..|...+++..+...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567788888888888888887766411112 123444556677778888877777766542 1223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHH
Q 040027 317 -TLMDGFC-LMGKINRAEELFGSM 338 (595)
Q Consensus 317 -~l~~~~~-~~~~~~~a~~~~~~~ 338 (595)
.-+..+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1123444 567777777666554
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.02 E-value=34 Score=26.89 Aligned_cols=62 Identities=6% Similarity=-0.017 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
+++.++|..|...|+.-. ...|......+...|++++|.++|+.-++.+-+|-...-...-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 347888888888766554 45667777788888888888888888888877775555444433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.87 E-value=44 Score=27.71 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 040027 325 MGKINRAEELFGSMESMGCKHD-DVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 380 (595)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 380 (595)
.+....+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3335567777777766554332 3356666666777777777777777777765555
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.89 E-value=1.1e+02 Score=30.96 Aligned_cols=395 Identities=8% Similarity=-0.014 Sum_probs=172.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhH
Q 040027 106 FCKIGRVSLGFIAFGRILRSCFTPNAA-TFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMI 184 (595)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (595)
..+.|++..+..+...+... +..+. .|..+...+ .....++....+.+-.. .+.....-...+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHH
Confidence 44567777777666554322 21111 122221111 12234444333333221 11122333445566666777765
Q ss_pred HHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCHH--HHH
Q 040027 185 ALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDWN--EAK 262 (595)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~A~ 262 (595)
.+..+.. .+.+...-.....+....|+.++|....+.+=..| ...+..+..|+..+.+.|... ...
T Consensus 91 ~l~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 91 LLAFSPE-----------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp HHHHCCS-----------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHhccC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 5553332 13455555666677777888777776666654443 224555666666666555432 233
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--------------HHHHHHhcCCH
Q 040027 263 RLFIEMMDQGVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNT--------------LMDGFCLMGKI 328 (595)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~ 328 (595)
.-++.+...| +......++... . .+.....+.+..+.+. +++...... .+.-. ...+.
T Consensus 159 ~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~rl-ar~d~ 230 (618)
T 1qsa_A 159 ERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAFASV-ARQDA 230 (618)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHHHHH-HHHCH
T ss_pred HHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHHHHH-HhcCH
Confidence 3333333332 121111121111 0 1111111112222221 111111100 11111 12355
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 040027 329 NRAEELFGSMESMGCKHDDVSYNI----LINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQVEHALKL 404 (595)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 404 (595)
+.|...+....+.. ..+...... ++......+...++...+....... .+.......+....+.|+++.|...
T Consensus 231 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666664332 223222222 2222222332445555555544332 2322233333334456777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 040027 405 FDEMQRDGVAADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLV 484 (595)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (595)
|..|.... .....-..=+..++...|+.++|..+|+.+.. +.+ .|..+. ..+.|..-.. ... ...
T Consensus 308 ~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~~~--fYg~lA--a~~Lg~~~~~-----~~~--~~~ 372 (618)
T 1qsa_A 308 LARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA--AQRIGEEYEL-----KID--KAP 372 (618)
T ss_dssp HHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH--HHHTTCCCCC-----CCC--CCC
T ss_pred HHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--hHHHHH--HHHcCCCCCC-----CCC--CCC
Confidence 76665421 11233233344456667777777777777663 112 122221 1122221000 000 011
Q ss_pred CC---HH---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040027 485 PN---VV---TYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLH 546 (595)
Q Consensus 485 p~---~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 546 (595)
+. .. .-...+..+...|....|...+..+... .+......+.......|.++.+.....
T Consensus 373 ~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 373 QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 00 1112345567789999998888887764 233333445555556777776665443
No 273
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.84 E-value=57 Score=27.54 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 504 DKARDLFLDMEENAAAPD-VITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVD 565 (595)
Q Consensus 504 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 565 (595)
+.+.++|..|...|+.-. ...|......+...|++.+|..+|+.-++.+-+|-...-...-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 193 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQ 193 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 577788888888876655 45667778888889999999999999988777775554444333
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.56 E-value=1.1e+02 Score=29.95 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 131 AATFNSLIKGLHAESRIMEAAALFTKLKAFGC-EPNV---ITYNTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 131 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
...+|.+++.|...+.++.|..+..+..--.. .++. .-+..+++.+.-.+++.+|.+.|..+...-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45688999999999999999999998852110 0111 122356778888999999999999987653
No 275
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.91 E-value=1.7e+02 Score=29.54 Aligned_cols=350 Identities=9% Similarity=0.011 Sum_probs=174.1
Q ss_pred HHHHHhCCCCCCH-hhHHHHHHHHHcCCCchhHH-hhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 040027 55 DYMLRMHPSPPPV-SSFNILLASLAKNKHYDTRL-NATGLFPNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAA 132 (595)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 132 (595)
...++.+|+.|-. ..-+.-+..+++.+++...+ .....+.+...-+....+....|+..+|....+.+-..| ...+.
T Consensus 59 ~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~ 137 (618)
T 1qsa_A 59 TNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN 137 (618)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcH
Confidence 4445556662222 23345556677777766622 222245577777778888888888877877777776665 44566
Q ss_pred HHHHHHHHHHhcCCHhHH--HHHHHHHHhcCCCCCHhhHHHHHHHH-----------Hh-cCChhHHHHHHHHHHhcCCC
Q 040027 133 TFNSLIKGLHAESRIMEA--AALFTKLKAFGCEPNVITYNTLINGL-----------CR-TGHTMIALNLFEEMANGNGE 198 (595)
Q Consensus 133 ~~~~l~~~~~~~g~~~~A--~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~~~ 198 (595)
.+..++..+.+.|.+... ..=++.+...| +...-..++..+ .. ..+...+......
T Consensus 138 ~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~------- 207 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART------- 207 (618)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-------
Confidence 777777777766655332 22222233222 111111111111 00 0111111111111
Q ss_pred CCccccCcH---HHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHH----HHHHHhcCCHHHHHHHHHHHHHC
Q 040027 199 IGVVCKPNT---VTYSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSL----IHGLCHANDWNEAKRLFIEMMDQ 271 (595)
Q Consensus 199 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~A~~~~~~~~~~ 271 (595)
.+++. ..+...+.-+.+ .+.+.|...+....+.. ..+......+ +......+...++..++......
T Consensus 208 ----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 208 ----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp ----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred ----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 01111 111122222333 37788888887776542 2233332222 22233344244566666665443
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 040027 272 GVQPSVVTFNVIMDELCKNRKMDEASRLLDLMVQRGVRPNACTYNTLMDGFCLMGKINRAEELFGSMESMGCKHDDVSYN 351 (595)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (595)
. .+.....-.+....+.|+++.+...|+.|.... ........-+.+++...|+.++|..+|..+... .+ .|.
T Consensus 282 ~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg 353 (618)
T 1qsa_A 282 S--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP 353 (618)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH
T ss_pred C--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHH
Confidence 2 233333444445556788888888888776532 123444555677778888888888888887642 11 232
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H-----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040027 352 ILINGYCKNKEVEEALSLYREMVSKGIKPT-V-----VTYNTLFLGLFEIHQVEHALKLFDEMQRDGVAADTRTYTTFID 425 (595)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 425 (595)
.+. ..+.|..... ....+.+. . ......+..+...|....|...+..+.+. .+......+..
T Consensus 354 ~lA--a~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MVA--AQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (618)
T ss_dssp HHH--HHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HHH--HHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHH
Confidence 221 1222221000 00000000 0 01122344566788888888888877754 23333344445
Q ss_pred HHHhcCCHHHHHHHHH
Q 040027 426 GLCKNGYIIEAVELFR 441 (595)
Q Consensus 426 ~~~~~g~~~~A~~~~~ 441 (595)
.....|..+.++....
T Consensus 422 ~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHH
Confidence 5566777776665443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.30 E-value=84 Score=24.68 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 040027 331 AEELFGSMESMGCKHD-DVSYNILINGYCKNKEVEEALSLYREMVSKGIKP 380 (595)
Q Consensus 331 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 380 (595)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666665544322 3345556666666666777777666666665554
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=49.98 E-value=68 Score=22.97 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040027 432 YIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFL 511 (595)
Q Consensus 432 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (595)
..++|..+-+-+...+ . ...+-..-+..+.+.|++++|..+.+... .||...|..|. -.+.|--+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG-Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 4455555555444433 1 11111122334667888888888776654 57777776553 346777777777776
Q ss_pred HHHHcCCCCCHHHH
Q 040027 512 DMEENAAAPDVITF 525 (595)
Q Consensus 512 ~~~~~~~~~~~~~~ 525 (595)
++...| .|....|
T Consensus 93 ~la~sg-~p~~q~F 105 (115)
T 2uwj_G 93 GLGGSS-DPALADF 105 (115)
T ss_dssp HHHTCS-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 777665 4444444
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.83 E-value=72 Score=22.90 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 040027 460 DGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDMEENAAAPDVITF 525 (595)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 525 (595)
..+.+.|++++|..+.+... .||...|..|. -.+.|--+++..-+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567788888888777665 57777776554 346677777776666666655 4443333
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.16 E-value=57 Score=25.89 Aligned_cols=61 Identities=8% Similarity=-0.195 Sum_probs=42.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPP--PVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIA 118 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 118 (595)
+-+.|++=+|.++|+.+.+..+. + ....|..||.+ .++.-...+.|+...|..+
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~-~~~er~~lqGLIQ~-----------------------lAvAl~H~~rgN~~GA~~l 97 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGR-GNTESKFLHGMVQV-----------------------AAGAYKHFDFEDDDGMRSL 97 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCS-SSHHHHHHHHHHHH-----------------------HHHHHHHHHHCCHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCC-CchHHHHHHHHHHH-----------------------HHHHHHHHHhCCHHHHHHH
Confidence 45668888888888888887765 3 33455555531 1344456778999999999
Q ss_pred HHHHHhC
Q 040027 119 FGRILRS 125 (595)
Q Consensus 119 ~~~~~~~ 125 (595)
++++...
T Consensus 98 l~~Al~~ 104 (161)
T 2ijq_A 98 FRTSLQY 104 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.79 E-value=1.4e+02 Score=25.48 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=44.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhc--CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCccccCcHHHHH
Q 040027 138 IKGLHAESRIMEAAALFTKLKAF--GCEP----NVITYNTLINGLCRTGHTMIALNLFEEMANGNGEIGVVCKPNTVTYS 211 (595)
Q Consensus 138 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (595)
+..+....++++|.+++++.... +.+. ........+..-.....-.-+..+.+.+.. . .+.....
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~--------~~~~~~r 95 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-S--------NEIVHLK 95 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-C--------SSHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------CCHHHHH
Confidence 44566667777777776665432 1111 111222223322332233333344444432 1 3355556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 212 TIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 212 ~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
..+..+.+.|+.++|.++|-+...
T Consensus 96 ~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 96 SGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCChhHHHHHHHHHHH
Confidence 666777788888888877766543
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.48 E-value=1.1e+02 Score=24.29 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 040027 331 AEELFGSMESMGCKHD-DVSYNILINGYCKNKEVEEALSLYREMVSKGIKPT 381 (595)
Q Consensus 331 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (595)
+..+|..|...++-.. ...|......+...|++.+|.++|+.-++.+..|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666665554332 33455566666666777777777776666655553
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.53 E-value=1.4e+02 Score=23.75 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=31.7
Q ss_pred cCChhHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHhHHHHHHHHHHh
Q 040027 109 IGRVSLGFIAFGRILRSCFTP--NAATFNSLIK-G-----LHAESRIMEAAALFTKLKA 159 (595)
Q Consensus 109 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 159 (595)
.|++-+|-.+|+.+=+....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776664344 3445555555 2 2346777777777766654
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.55 E-value=1.4e+02 Score=25.54 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 040027 101 ILINCFCKIGRVSLGFIAFGRILRS--CFTP----NAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLIN 174 (595)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 174 (595)
--+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+. . ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 4567888999999999999976543 1121 11222333333333333334444455553 2 446666777778
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 040027 175 GLCRTGHTMIALNLFEEMA 193 (595)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~ 193 (595)
.+.+.|+.++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8889999999998886654
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=39.22 E-value=1e+02 Score=22.05 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.7
Q ss_pred HHhcCCHHHHHHH
Q 040027 252 LCHANDWNEAKRL 264 (595)
Q Consensus 252 ~~~~~~~~~A~~~ 264 (595)
+.++|++++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T 2uwj_G 49 LANQGRYQEALAF 61 (115)
T ss_dssp HHHTTCHHHHHGG
T ss_pred HHcchhHHHHHHh
Confidence 3344444444443
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.78 E-value=3.1e+02 Score=29.41 Aligned_cols=131 Identities=11% Similarity=-0.015 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 040027 423 FIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQ 502 (595)
Q Consensus 423 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 502 (595)
++..+...|.++-|.++.. ..+.++..--.++.+|...|++++|...|+++.. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~-----~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG-----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG-----GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 4455566666665444221 1234444444566677777788888877777653 22211100000
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 040027 503 MDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDA----SIVSIVVDLLVKNE 571 (595)
Q Consensus 503 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 571 (595)
......++.. .+.. ......|..++..+-+.+-++-+.++-+.+++.--.-|. ..|..+.++.+..|
T Consensus 880 ~~~~~~ll~~-~e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEK-YHHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHH-TTTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCc-cccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0000011100 0000 111236778888888888888888888888864212233 24555555554443
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.01 E-value=1.1e+02 Score=21.97 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=6.4
Q ss_pred HHhcCCHHHHHHHH
Q 040027 252 LCHANDWNEAKRLF 265 (595)
Q Consensus 252 ~~~~~~~~~A~~~~ 265 (595)
+.++|++++|..+.
T Consensus 50 LmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 50 LMNRGDYASALQQG 63 (116)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHcchhHHHHHHhc
Confidence 34444444444443
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.62 E-value=1.4e+02 Score=23.05 Aligned_cols=62 Identities=5% Similarity=0.057 Sum_probs=38.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 512 DMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.+.+.|+..+..=. .++..+...+..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34455666554322 344444555566677777777776655556777777777777777765
No 288
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.94 E-value=1.7e+02 Score=24.44 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHhcCCCCCHhhH--------HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040027 147 IMEAAALFTKLKAFGCEPNVITY--------NTLINGLCRTGHTMIALNLFEEMANGN 196 (595)
Q Consensus 147 ~~~A~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 196 (595)
++.|+.+|+.+.+.. +.+.... ...+..|.+.|.+++|.++|++.....
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 467899999888763 2122221 244567889999999999999998754
No 289
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.64 E-value=1.8e+02 Score=23.90 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=7.7
Q ss_pred CHhhHHHHHHHHHhcCC
Q 040027 165 NVITYNTLINGLCRTGH 181 (595)
Q Consensus 165 ~~~~~~~l~~~~~~~g~ 181 (595)
+..+....+.++...|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444444444444
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.47 E-value=1.7e+02 Score=23.72 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 040027 416 DTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQ 495 (595)
Q Consensus 416 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 495 (595)
+...-...+.++...|..+ +...+..+.. .++.......+.++.+.++.+.... +..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEP-LIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHHH
Confidence 4444444445555555432 2233333332 4566666666666666666543333 333332 345555555566
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040027 496 GLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKN 570 (595)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 570 (595)
++...++. ++...+..+.. .++...-...+.++...|. .++...+..+.. .++..+-.....++.+-
T Consensus 130 aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 130 ALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHHC
T ss_pred HHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 66666553 34444444443 3455555666666666664 455666666653 24666666656655543
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.33 E-value=2.9e+02 Score=26.37 Aligned_cols=29 Identities=17% Similarity=-0.031 Sum_probs=17.5
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 240 PDVVTYNSLIHGLCHANDWNEAKRLFIEMMD 270 (595)
Q Consensus 240 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 270 (595)
.+......++.. ..|+..+++.+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344455555444 46777777777776654
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.98 E-value=1.7e+02 Score=23.67 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHH
Q 040027 94 PNLYTYNILINCFCKIGRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLI 173 (595)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 173 (595)
+|+......+..+...|.... ...+-++.. .++...-...+.++...+.. ++...+..+.. .++..+....+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 344444444455555444322 222222222 23444444444445444443 22233333332 23555555555
Q ss_pred HHHHhcCCh
Q 040027 174 NGLCRTGHT 182 (595)
Q Consensus 174 ~~~~~~g~~ 182 (595)
.++...|+.
T Consensus 98 ~aL~~~~~~ 106 (201)
T 3ltj_A 98 VALGQIGDE 106 (201)
T ss_dssp HHHHHHCCG
T ss_pred HHHHHhCcH
Confidence 555555543
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.21 E-value=1.5e+02 Score=22.61 Aligned_cols=60 Identities=5% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 514 EENAAAPDVITFDMLIHGFIRIN-EPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 514 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 10 ~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 10 RKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344544443322 2333333343 45556666666665544445555555566666666554
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.10 E-value=2.2e+02 Score=30.59 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=34.8
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040027 458 LIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQMDKARDLFLDME 514 (595)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (595)
++..+...|.++-|.++..-+. .++..-..++.+|...|++++|...|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666777787777665443332 244333456788888888888888888764
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.24 E-value=93 Score=24.72 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred hHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCChh
Q 040027 113 SLGFIAFGRIL-RSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAF--GCEPNVITYNTLINGLCRTGHTM 183 (595)
Q Consensus 113 ~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 183 (595)
+.+..-+.+.. +.|... ...-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444444433 445554 334456777777777888999999999887 66677777777778888877543
No 296
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.88 E-value=1.4e+02 Score=23.18 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 513 MEENAAAPDVITFDMLIHGFIRIN-EPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4455655554322 2334444444 55667777777776655556777777777777777766
No 297
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.64 E-value=67 Score=22.71 Aligned_cols=57 Identities=7% Similarity=-0.064 Sum_probs=40.3
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCchhHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 040027 41 DINVITPNEAFCIFDYMLRMHPSPPPVSSFNILLASLAKNKHYDTRLNATGLFPNLYTYNILINCFCKIGRVSLGFIAFG 120 (595)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 120 (595)
+-+.|++=+|.++++.+....|. +....|..+|.. ++.-...+.|+. |..++.
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~------------------------Ava~~h~~~gn~--a~~ll~ 63 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILL------------------------AAALHQRRLGRP--GLRNLR 63 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH------------------------HHHHHHHHTTCC--CHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHH------------------------HHHHHHHHcCcH--HHHHHH
Confidence 34569999999999999998865 445666666643 333344567777 888888
Q ss_pred HHHh
Q 040027 121 RILR 124 (595)
Q Consensus 121 ~~~~ 124 (595)
+...
T Consensus 64 ~a~~ 67 (94)
T 2cwy_A 64 KAEA 67 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.04 E-value=2.7e+02 Score=25.05 Aligned_cols=41 Identities=5% Similarity=-0.012 Sum_probs=31.0
Q ss_pred hhccchhhhhhhcccccccccccCCCChHHHHHHHHHHHHh
Q 040027 20 AFRSNFSSLLVHFRDLTTREGDINVITPNEAFCIFDYMLRM 60 (595)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 60 (595)
.|+.-.+....|.....++..++.+|+++.|.+++++-+..
T Consensus 17 ~~~~~~~~~~~W~~nS~laadhvAAGsFetAm~lLnrQvGi 57 (325)
T 3mv2_A 17 LFQGPHMETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGV 57 (325)
T ss_dssp ----CCHHHHHHHHHCCSHHHHHHTTCHHHHHHHHHHHHCB
T ss_pred eeeCCCcHHHHHHHcCCcHHHHHHccCHHHHHHHHHHHhCc
Confidence 45555566667888888888899999999999999988755
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.00 E-value=1.8e+02 Score=24.50 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHHHHhhCCCCC
Q 040027 183 MIALNLFEEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFLQMKDENINP 240 (595)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 240 (595)
+.+..+|..|...+- ...-...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~I-----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHI-----GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTC-----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCc-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455566666665541 11224555666666666666666666666665554443
No 300
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.29 E-value=1.5e+02 Score=22.84 Aligned_cols=60 Identities=8% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 513 MEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.+.|+.++..= ..++..+...+ .-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 334455555432 22333444444 5567777777766554556666666666677766655
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.80 E-value=1.2e+02 Score=20.33 Aligned_cols=62 Identities=6% Similarity=0.069 Sum_probs=43.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 512 DMEENAAAPDVITFDMLIHGFIRIN-EPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.|.+.|...
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 35566766665443 3445555544 56678888888887766668888888888898888876
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.36 E-value=3.7e+02 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040027 411 DGVAADTRTYTTFIDGLCKNGYIIEAVELFRT 442 (595)
Q Consensus 411 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 442 (595)
.|++--...|..-...+...|++++|.++--.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444444444444555555555444433
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.28 E-value=3.3e+02 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHhh
Q 040027 209 TYSTIIDGLCKEGFVDKAKALFLQMKD 235 (595)
Q Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 235 (595)
....++.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 345677888889999999999988753
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=29.35 E-value=2.2e+02 Score=24.35 Aligned_cols=170 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040027 346 DDVSYNILINGYCKNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFE-IHQVEHALKLFDEMQRDGVAADTRTYTTFI 424 (595)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 424 (595)
+..-...++....+.+++++..+..+.+.+.+...+..-.+.+-.+|-. .|....+++++..+.+..-.........++
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i 86 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEV 86 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHH
Q ss_pred HHHHh--cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCh-----------------HHHHHHHHhccc---CC
Q 040027 425 DGLCK--NGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSGRL-----------------KFAWELFCSLPH---GV 482 (595)
Q Consensus 425 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~---~~ 482 (595)
.-|.+ ...+..-..-+-.++...+-|+...-..-+..+--.||+ +.|...|+.+.+ ..
T Consensus 87 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 166 (236)
T 3iqu_A 87 REYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKE 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHH
Q 040027 483 LVPNVVTYNIMIQGLC-----NDGQMDKARDLFLDMEE 515 (595)
Q Consensus 483 ~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 515 (595)
++|+......|+.-|. -.++.++|..+.+++.+
T Consensus 167 L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 167 MPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.22 E-value=1.2e+02 Score=24.13 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=39.6
Q ss_pred hHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCccc
Q 040027 504 DKARDLFLDM-EENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEK--KVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 504 ~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+.+++-+.+. .+.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.|...|...
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3334433333 3345555543 233445555555666777777777665 44456666666667777777665
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.34 E-value=1.3e+02 Score=22.76 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=28.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 528 LIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
++..+...+..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 34444455555666677777766554556666666666677666655
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.80 E-value=3e+02 Score=23.80 Aligned_cols=137 Identities=14% Similarity=0.083 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHH
Q 040027 415 ADTRTYTTFIDGLCKNGYIIEAVELFRTLRILKCELDIQAYNCLIDGLCKSG-RLKFAWELFCSLPHGVLVPNVVTYNIM 493 (595)
Q Consensus 415 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l 493 (595)
++..+-...+.++...|+.+ +...+..+.. .++.......+.++...| +...+...+..+.. .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555555555555555422 3333333332 345555555555555544 23344444444443 3455555556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 494 IQGLCNDGQMDKARDLFLDMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLL 567 (595)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 567 (595)
+.++...|+. .+...+..+.+. ++ .-...+.++...|. .++...+.++... .++.......++.+
T Consensus 213 ~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 213 IIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHH
T ss_pred HHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHh
Confidence 6666666643 344444444432 22 22334555566665 3556666666542 24444444444443
No 308
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.52 E-value=2e+02 Score=24.77 Aligned_cols=19 Identities=16% Similarity=-0.057 Sum_probs=9.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 040027 102 LINCFCKIGRVSLGFIAFG 120 (595)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~ 120 (595)
.+...++.|+.+....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444455666554444443
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.67 E-value=1.9e+02 Score=22.26 Aligned_cols=58 Identities=7% Similarity=0.063 Sum_probs=35.6
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 123 LRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
.+.|..+... -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445443332 344555555555 667888888887776666777766666777666643
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.65 E-value=2.1e+02 Score=21.97 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=41.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 122 ILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
+.+.|...+.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44556554333 3456666666677778999999998887677777777777777777654
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.80 E-value=1.1e+02 Score=23.47 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=23.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 529 IHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
+..+...+..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3333344444555555555555444445555555555555555544
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.37 E-value=4.5e+02 Score=25.07 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=20.7
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040027 359 KNKEVEEALSLYREMVSKGIKPTVVTYNTLFLGL 392 (595)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (595)
+.++.+.|+.++.+|++.|..|....-..+..+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567777777777777776665444444333333
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.96 E-value=4.1e+02 Score=24.44 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040027 455 YNCLIDGLCKSGRLKFAWELFCSLPHGVLVPNVVTYNIMIQGLCNDGQ--MDKARDLFLDMEENAAAPDVITFDMLIHGF 532 (595)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (595)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+....++..+...|+-........ +
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G----f 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG----Y 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH----H
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH----H
Confidence 466777788889999999999888641111 12223333344433332 3456667777776654332222222 1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCccc-ccchHHHHhhhh
Q 040027 533 IRINEPSKVNELLHKMKEKKVMPDA-SIVSIVVDLLVKNEISL-KSLPSFLVQERQ 586 (595)
Q Consensus 533 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~-~~i~~~~~~~~~ 586 (595)
.+....+.++.- . -|.. ..+..++.-+...|-.. .+++.+|...|+
T Consensus 295 ------~~vl~~ldDl~l-D-iP~A~~~la~~varai~~g~l~~~f~~~~p~r~rk 342 (358)
T 3eiq_C 295 ------ERIYNEIPDINL-D-VPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRK 342 (358)
T ss_dssp ------HHHHHHHHHHHH-H-CTTHHHHHHHHHHHHHHHTSSCHHHHTTCCCC---
T ss_pred ------HHHHHhccHhhc-c-cccHHHHHHHHHHHHHHCCCCCHHHHHhCcccCCc
Confidence 223333333331 1 2543 45555666666777777 777777755444
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.88 E-value=3.1e+02 Score=22.98 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=14.1
Q ss_pred HHHHHhcCChHHHHHHHHhccc
Q 040027 459 IDGLCKSGRLKFAWELFCSLPH 480 (595)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~ 480 (595)
+-.|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 4456666666666666666655
No 315
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.33 E-value=1.4e+02 Score=22.59 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 345566666666778888888888776666777777777777776644
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.29 E-value=2.5e+02 Score=21.76 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 122 ILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4455543 34444566777777777888999999998887777777777777888777754
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.38 E-value=5e+02 Score=24.92 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 040027 110 GRVSLGFIAFGRILRSCFTPNAATFNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHTMIALNLF 189 (595)
Q Consensus 110 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 189 (595)
.+.+-|.++..+ .|.+--...|..-...+...|++++|.++-....+ |+-.+..+.+.+-..-...|+..--+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 555555554443 33444455566666777888888888877666544 34445555554444334455555666666
Q ss_pred HHHHhcCCCCCccccCcHHHHHHHHHHHHHcCCHhHHHHHHH
Q 040027 190 EEMANGNGEIGVVCKPNTVTYSTIIDGLCKEGFVDKAKALFL 231 (595)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (595)
..+.+.+ ..+..--.-+++.-...|+.+-.++++.
T Consensus 419 ~~Ll~~g-------~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 419 GILLDQG-------QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccC-------ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 6666654 2333333334455555555554444443
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.24 E-value=3.1e+02 Score=22.54 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHCCCCCCHHH
Q 040027 348 VSYNILINGYCK---NKEVEEALSLYREMVSKGIKPTVVTYNTLFLGLFEIHQ-----VEHALKLFDEMQRDGVAADTRT 419 (595)
Q Consensus 348 ~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 419 (595)
..+..+++++.+ ..+.+.|+-.+-+|++.|-.|....-..++.+....|. ...|...++.....|.+--...
T Consensus 5 d~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~ 84 (201)
T 3bge_A 5 DRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERA 84 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040027 420 YTTFIDGLCKNGYIIEAVELFRTLRI 445 (595)
Q Consensus 420 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 445 (595)
+...+-.++..-+-..+...++.+++
T Consensus 85 LaqaviyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 85 IAQAIIYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHH
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.06 E-value=2.7e+02 Score=21.61 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCccc
Q 040027 512 DMEENAAAPDVITFDMLIHGFIRINEPSKVNELLHKMKEKKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.|...|...
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344556554433 23345555666667788888888877665667778888888888888776
No 320
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.88 E-value=1.3e+02 Score=20.61 Aligned_cols=36 Identities=14% Similarity=-0.049 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCccc
Q 040027 538 PSKVNELLHKMKE-KKVMPDASIVSIVVDLLVKNEISL 574 (595)
Q Consensus 538 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~ 574 (595)
.++|...|.+|+. .++.|+ .+|...+.......+|.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRYL 52 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGGG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCccc
Confidence 3566666666663 454443 34444445555555544
No 321
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.49 E-value=4.2e+02 Score=23.70 Aligned_cols=58 Identities=7% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHH
Q 040027 210 YSTIIDGLCKEGFVDKAKALFLQMKDENINPDVVTYNSLIHGLCHANDW--NEAKRLFIEMM 269 (595)
Q Consensus 210 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~~~ 269 (595)
...++.-|...|+.++|...++++..... .......++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45677888888999999888887643221 222233344444444432 33444555554
No 322
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.22 E-value=1.2e+02 Score=23.22 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCh
Q 040027 135 NSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCRTGHT 182 (595)
Q Consensus 135 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (595)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 455666666666778888888888777667777777777777776644
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.05 E-value=1.7e+02 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=10.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 040027 317 TLMDGFCLMGKINRAEELFGSM 338 (595)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~ 338 (595)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3344444444444444444443
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.69 E-value=5.7e+02 Score=24.96 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH--HH-HHHHHHHHhcCCHhHHHHHHHHHHhc
Q 040027 96 LYTYNILINCFCKIGRVSLGFIAFGRILRSCF-TPNAA--TF-NSLIKGLHAESRIMEAAALFTKLKAF 160 (595)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 160 (595)
...++.+++.|...+.++.|..+..+..--.. .++.. .| -.+...+.-++++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999998852100 11111 12 23456677789999999999988775
No 325
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.03 E-value=87 Score=19.83 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HcCCCc
Q 040027 47 PNEAFCIFDYMLRMHPSPPPVSSFNILLASL-AKNKHY 83 (595)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 83 (595)
.++|.+.|-++|+.+.- .+.-+|...++.+ .+..++
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccCCCcc
Confidence 47899999999987654 3557888888877 555554
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.44 E-value=1.7e+02 Score=18.91 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 040027 134 FNSLIKGLHAESRIMEAAALFTKLKAFGCEPNVITYNTLINGLCR 178 (595)
Q Consensus 134 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (595)
++.++..++...-.+.++-.++++.+.| ..+..+|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555 2344455444444443
Done!