Query 040031
Match_columns 94
No_of_seqs 162 out of 1076
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.3 1.7E-11 3.7E-16 89.1 7.0 59 1-59 414-472 (485)
2 KOG0254 Predicted transporter 98.8 1.2E-08 2.6E-13 74.3 7.2 60 1-60 441-502 (513)
3 PF00083 Sugar_tr: Sugar (and 98.8 5.7E-10 1.2E-14 79.0 -0.2 56 1-56 395-451 (451)
4 TIGR00887 2A0109 phosphate:H+ 98.4 4.2E-07 9.2E-12 65.8 4.9 53 1-54 438-501 (502)
5 PRK10077 xylE D-xylose transpo 98.3 2E-06 4.3E-11 61.4 6.9 60 2-61 411-477 (479)
6 KOG0252 Inorganic phosphate tr 97.6 0.00011 2.5E-09 53.8 5.0 54 2-56 453-512 (538)
7 TIGR00879 SP MFS transporter, 97.0 0.0013 2.8E-08 46.1 4.3 50 2-51 430-480 (481)
8 PRK10489 enterobactin exporter 96.6 0.0031 6.7E-08 44.5 3.7 53 2-54 359-412 (417)
9 TIGR00898 2A0119 cation transp 95.7 0.021 4.6E-07 41.2 4.6 31 20-51 474-504 (505)
10 TIGR01299 synapt_SV2 synaptic 95.5 0.047 1E-06 42.4 6.1 47 2-49 695-741 (742)
11 KOG0253 Synaptic vesicle trans 93.4 0.096 2.1E-06 38.4 3.1 45 3-49 482-527 (528)
12 TIGR00880 2_A_01_02 Multidrug 92.5 0.5 1.1E-05 27.2 5.1 42 3-44 99-141 (141)
13 PRK09705 cynX putative cyanate 90.8 1.1 2.4E-05 31.6 6.1 46 4-49 342-389 (393)
14 PRK10642 proline/glycine betai 89.0 0.99 2.1E-05 32.9 4.7 46 4-50 391-438 (490)
15 PRK11663 regulatory protein Uh 88.7 0.68 1.5E-05 33.1 3.7 46 2-47 384-430 (434)
16 TIGR00903 2A0129 major facilit 88.0 2 4.4E-05 30.3 5.6 43 3-45 126-169 (368)
17 PF01306 LacY_symp: LacY proto 87.9 3.1 6.7E-05 30.4 6.5 45 2-46 360-405 (412)
18 TIGR00889 2A0110 nucleoside tr 86.5 3.1 6.8E-05 29.7 6.0 45 3-47 357-408 (418)
19 KOG0255 Synaptic vesicle trans 85.8 2.6 5.6E-05 30.8 5.4 26 26-51 477-502 (521)
20 PRK15403 multidrug efflux syst 85.3 4.5 9.7E-05 28.8 6.3 36 11-46 160-196 (413)
21 PRK15402 multidrug efflux syst 84.6 4.4 9.6E-05 28.4 5.9 35 12-46 158-193 (406)
22 TIGR00710 efflux_Bcr_CflA drug 84.1 5.9 0.00013 27.1 6.3 43 5-47 143-186 (385)
23 PRK11102 bicyclomycin/multidru 83.5 6.1 0.00013 27.2 6.2 41 5-45 129-170 (377)
24 TIGR00712 glpT glycerol-3-phos 83.1 2.7 5.8E-05 30.0 4.4 40 6-45 397-437 (438)
25 PRK15011 sugar efflux transpor 82.7 6.1 0.00013 27.8 6.0 42 5-46 157-199 (393)
26 TIGR00899 2A0120 sugar efflux 81.9 6.6 0.00014 26.8 5.9 36 10-45 144-180 (375)
27 PRK10473 multidrug efflux syst 79.9 8.3 0.00018 26.8 5.9 32 15-46 151-183 (392)
28 TIGR00895 2A0115 benzoate tran 79.9 3 6.5E-05 28.5 3.6 44 3-46 153-197 (398)
29 PRK10213 nepI ribonucleoside t 78.6 11 0.00023 26.7 6.1 41 6-46 159-200 (394)
30 PRK14995 methyl viologen resis 78.3 3.5 7.6E-05 30.1 3.7 43 5-47 145-188 (495)
31 TIGR00893 2A0114 d-galactonate 78.1 10 0.00023 25.6 5.8 43 4-46 131-174 (399)
32 PRK03545 putative arabinose tr 77.8 12 0.00027 26.0 6.2 38 8-45 150-188 (390)
33 PRK11273 glpT sn-glycerol-3-ph 76.5 11 0.00023 27.1 5.7 39 7-45 400-440 (452)
34 PF06645 SPC12: Microsomal sig 76.3 11 0.00024 20.9 4.6 19 3-21 19-37 (76)
35 PRK03893 putative sialic acid 75.3 8.8 0.00019 27.6 5.0 42 3-44 414-457 (496)
36 KOG4112 Signal peptidase subun 74.9 14 0.0003 21.6 4.8 30 3-32 34-63 (101)
37 PRK15011 sugar efflux transpor 74.8 14 0.0003 25.9 5.9 41 3-44 352-393 (393)
38 KOG2816 Predicted transporter 74.4 9.1 0.0002 28.4 5.0 40 12-51 169-209 (463)
39 smart00793 AgrB Accessory gene 74.0 14 0.0003 23.8 5.2 24 28-51 106-130 (184)
40 COG2814 AraJ Arabinose efflux 73.7 14 0.00031 26.9 5.7 27 16-42 162-189 (394)
41 PRK01100 putative accessory ge 73.5 16 0.00035 24.2 5.5 21 30-50 120-141 (210)
42 PRK11663 regulatory protein Uh 72.8 15 0.00032 26.2 5.7 41 4-44 160-201 (434)
43 PRK09874 drug efflux system pr 71.8 23 0.00049 24.6 6.3 39 6-44 157-196 (408)
44 PRK09528 lacY galactoside perm 71.3 21 0.00045 25.2 6.1 41 3-43 364-405 (420)
45 KOG2532 Permease of the major 71.0 33 0.00072 25.5 7.2 50 9-58 182-237 (466)
46 PRK11652 emrD multidrug resist 70.3 22 0.00048 24.7 6.0 33 13-45 154-187 (394)
47 PRK03545 putative arabinose tr 69.1 17 0.00036 25.4 5.2 39 3-41 341-380 (390)
48 PF10183 ESSS: ESSS subunit of 69.1 12 0.00027 22.0 3.9 30 22-51 62-91 (105)
49 TIGR00711 efflux_EmrB drug res 67.5 3.4 7.4E-05 29.5 1.5 39 9-47 144-183 (485)
50 PRK15034 nitrate/nitrite trans 67.5 49 0.0011 24.6 7.5 40 21-60 212-253 (462)
51 PF04647 AgrB: Accessory gene 67.4 29 0.00063 22.0 5.9 27 25-51 103-130 (185)
52 PRK12307 putative sialic acid 67.1 15 0.00033 25.8 4.7 42 3-44 369-412 (426)
53 TIGR02332 HpaX 4-hydroxyphenyl 67.0 22 0.00048 25.2 5.5 29 18-46 165-194 (412)
54 TIGR01299 synapt_SV2 synaptic 66.6 38 0.00081 26.8 7.0 25 20-44 333-357 (742)
55 PRK10091 MFS transport protein 65.2 24 0.00052 24.6 5.3 30 16-45 152-182 (382)
56 PF01350 Flavi_NS4A: Flaviviru 64.7 19 0.00042 22.6 4.2 28 24-51 99-127 (144)
57 PRK11551 putative 3-hydroxyphe 64.7 20 0.00043 25.0 4.9 29 17-45 165-194 (406)
58 PF07690 MFS_1: Major Facilita 63.9 8.3 0.00018 25.9 2.8 31 15-45 145-176 (352)
59 TIGR00901 2A0125 AmpG-related 63.8 32 0.0007 23.5 5.7 40 6-45 134-182 (356)
60 TIGR02718 sider_RhtX_FptX side 63.5 42 0.00091 23.4 6.3 39 6-44 148-187 (390)
61 PRK05122 major facilitator sup 63.4 27 0.00058 24.3 5.3 41 5-46 352-393 (399)
62 COG0738 FucP Fucose permease [ 63.1 26 0.00056 25.9 5.2 47 3-49 370-417 (422)
63 TIGR00887 2A0109 phosphate:H+ 63.0 57 0.0012 23.8 7.2 26 19-44 202-227 (502)
64 TIGR00891 2A0112 putative sial 61.6 41 0.0009 23.0 6.0 41 5-45 150-192 (405)
65 PRK12382 putative transporter; 60.8 40 0.00086 23.4 5.8 39 3-41 350-389 (392)
66 COG2211 MelB Na+/melibiose sym 59.9 23 0.00049 26.5 4.5 18 2-19 160-177 (467)
67 TIGR00892 2A0113 monocarboxyla 59.6 44 0.00095 24.2 6.0 40 4-43 156-196 (455)
68 TIGR00788 fbt folate/biopterin 59.4 35 0.00076 25.0 5.5 42 3-45 170-212 (468)
69 PF06963 FPN1: Ferroportin1 (F 58.0 49 0.0011 24.4 6.0 44 2-45 304-350 (432)
70 KOG0569 Permease of the major 57.4 3.7 8E-05 30.7 0.1 27 20-46 183-209 (485)
71 TIGR00881 2A0104 phosphoglycer 56.4 42 0.00091 22.6 5.2 30 16-45 145-175 (379)
72 TIGR00712 glpT glycerol-3-phos 55.9 48 0.0011 23.6 5.7 28 18-45 182-210 (438)
73 COG5336 Uncharacterized protei 55.5 44 0.00095 20.2 5.4 17 2-18 53-69 (116)
74 TIGR00897 2A0118 polyol permea 54.4 48 0.001 23.3 5.4 35 3-37 362-397 (402)
75 TIGR00890 2A0111 Oxalate/Forma 54.3 49 0.0011 22.2 5.3 29 15-43 150-179 (377)
76 PF13347 MFS_2: MFS/sugar tran 54.3 25 0.00055 25.0 4.0 42 2-43 151-200 (428)
77 PRK11043 putative transporter; 54.2 72 0.0016 22.2 6.4 37 7-43 146-183 (401)
78 PF06785 UPF0242: Uncharacteri 53.0 14 0.0003 26.7 2.3 36 3-38 22-58 (401)
79 PRK03893 putative sialic acid 53.0 43 0.00093 24.1 5.0 43 3-45 156-198 (496)
80 PRK10054 putative transporter; 53.0 52 0.0011 23.2 5.4 38 1-38 343-381 (395)
81 PLN00028 nitrate transmembrane 52.7 88 0.0019 22.8 7.0 25 19-43 196-221 (476)
82 PF11511 RhodobacterPufX: Intr 52.6 38 0.00082 18.5 6.0 36 11-46 21-57 (67)
83 PRK10054 putative transporter; 52.2 46 0.001 23.5 5.0 38 7-45 148-186 (395)
84 PRK09874 drug efflux system pr 52.1 47 0.001 23.0 5.0 38 4-41 360-398 (408)
85 PRK11646 multidrug resistance 51.9 71 0.0015 22.6 5.9 39 5-44 149-188 (400)
86 TIGR00899 2A0120 sugar efflux 51.6 58 0.0013 22.1 5.3 34 3-36 335-369 (375)
87 PRK15034 nitrate/nitrite trans 50.8 40 0.00086 25.1 4.6 41 3-43 414-456 (462)
88 TIGR00902 2A0127 phenyl propri 50.2 64 0.0014 22.5 5.4 33 4-36 342-374 (382)
89 PRK10473 multidrug efflux syst 49.8 41 0.00089 23.4 4.4 25 4-28 336-361 (392)
90 KOG0253 Synaptic vesicle trans 49.2 1.1E+02 0.0025 23.0 6.7 37 16-52 225-267 (528)
91 PF10643 Cytochrome-c551: Phot 49.1 6.3 0.00014 26.4 0.2 15 26-40 84-98 (233)
92 PRK12307 putative sialic acid 48.9 55 0.0012 23.0 4.9 41 4-45 155-196 (426)
93 TIGR00893 2A0114 d-galactonate 48.6 31 0.00067 23.2 3.6 37 2-38 358-396 (399)
94 KOG2533 Permease of the major 48.6 12 0.00025 28.1 1.5 44 3-46 182-232 (495)
95 PF03825 Nuc_H_symport: Nucleo 48.3 91 0.002 22.5 6.0 43 2-44 349-398 (400)
96 TIGR00792 gph sugar (Glycoside 47.9 73 0.0016 22.4 5.5 25 21-45 174-198 (437)
97 PRK06814 acylglycerophosphoeth 46.1 85 0.0019 25.5 6.1 40 6-45 159-198 (1140)
98 PF06963 FPN1: Ferroportin1 (F 46.0 1E+02 0.0022 22.8 6.0 40 2-41 160-200 (432)
99 COG5522 Predicted integral mem 45.7 29 0.00063 23.4 2.9 29 14-42 193-221 (236)
100 TIGR00900 2A0121 H+ Antiporter 45.7 90 0.002 20.9 6.4 34 5-38 142-176 (365)
101 PRK09952 shikimate transporter 44.5 95 0.0021 22.2 5.7 42 3-45 392-436 (438)
102 PRK09528 lacY galactoside perm 44.3 84 0.0018 22.2 5.3 39 5-44 155-194 (420)
103 PRK11551 putative 3-hydroxyphe 44.2 65 0.0014 22.4 4.7 36 3-38 356-393 (406)
104 cd06174 MFS The Major Facilita 43.5 52 0.0011 21.8 4.0 35 3-37 313-348 (352)
105 TIGR00894 2A0114euk Na(+)-depe 43.4 56 0.0012 23.4 4.4 40 5-44 181-222 (465)
106 PRK11010 ampG muropeptide tran 43.2 85 0.0018 23.1 5.3 40 4-44 365-405 (491)
107 PF15444 TMEM247: Transmembran 42.7 88 0.0019 20.6 4.7 22 20-41 191-212 (218)
108 COG0219 CspR Predicted rRNA me 42.4 15 0.00033 23.4 1.2 20 37-56 98-117 (155)
109 PF11700 ATG22: Vacuole efflux 42.3 83 0.0018 23.4 5.2 46 2-48 427-474 (477)
110 PRK10406 alpha-ketoglutarate t 41.6 69 0.0015 22.8 4.6 33 15-49 396-430 (432)
111 PRK10504 putative transporter; 41.4 1.2E+02 0.0026 21.7 5.8 38 8-45 151-189 (471)
112 PRK10207 dipeptide/tripeptide 40.4 1.1E+02 0.0023 22.7 5.5 37 3-40 155-192 (489)
113 PRK03633 putative MFS family t 40.3 1.1E+02 0.0024 21.2 5.4 33 3-35 333-366 (381)
114 PRK10489 enterobactin exporter 40.0 1.3E+02 0.0028 21.1 6.3 39 6-45 161-200 (417)
115 PF03839 Sec62: Translocation 39.3 50 0.0011 22.3 3.3 6 7-12 124-129 (224)
116 PF10112 Halogen_Hydrol: 5-bro 39.1 1.1E+02 0.0023 19.8 5.4 6 46-51 64-69 (199)
117 PF07095 IgaA: Intracellular g 38.8 1.8E+02 0.0039 23.2 6.5 33 35-67 241-273 (705)
118 PRK11010 ampG muropeptide tran 38.6 1.3E+02 0.0027 22.2 5.6 40 5-45 157-198 (491)
119 TIGR00890 2A0111 Oxalate/Forma 38.4 60 0.0013 21.8 3.7 28 4-31 344-372 (377)
120 PF04695 Pex14_N: Peroxisomal 37.8 17 0.00037 22.3 0.9 16 43-58 31-46 (136)
121 PRK14397 membrane protein; Pro 37.8 1.3E+02 0.0028 20.4 7.1 11 49-59 177-187 (222)
122 PRK11128 putative 3-phenylprop 37.6 1.4E+02 0.003 20.7 5.6 39 5-44 142-181 (382)
123 PLN00028 nitrate transmembrane 37.0 92 0.002 22.7 4.7 32 6-37 394-429 (476)
124 PRK11902 ampG muropeptide tran 36.9 1.5E+02 0.0032 20.8 5.7 32 6-37 354-386 (402)
125 KOG2504 Monocarboxylate transp 36.8 1.2E+02 0.0026 22.8 5.3 38 7-44 186-224 (509)
126 PRK15075 citrate-proton sympor 36.0 1.5E+02 0.0032 21.2 5.5 43 6-51 383-429 (434)
127 PRK03699 putative transporter; 35.9 1.3E+02 0.0027 21.1 5.1 33 3-35 341-374 (394)
128 PF15628 RRM_DME: RRM in Demet 35.8 30 0.00065 20.5 1.6 17 44-60 63-79 (103)
129 PF00854 PTR2: POT family; In 35.4 59 0.0013 22.8 3.4 33 3-35 84-117 (372)
130 TIGR00892 2A0113 monocarboxyla 34.7 23 0.0005 25.6 1.3 29 7-35 385-415 (455)
131 PF13974 YebO: YebO-like prote 34.1 20 0.00043 20.3 0.7 27 28-54 5-31 (80)
132 TIGR00903 2A0129 major facilit 34.0 1.7E+02 0.0036 20.6 5.5 34 3-38 328-362 (368)
133 PRK10642 proline/glycine betai 33.4 1.7E+02 0.0038 21.3 5.7 27 17-44 188-215 (490)
134 PF10961 DUF2763: Protein of u 33.4 83 0.0018 18.1 3.2 27 21-47 21-47 (91)
135 PF03092 BT1: BT1 family; Int 33.3 62 0.0013 23.5 3.3 41 3-43 136-177 (433)
136 COG4700 Uncharacterized protei 32.2 89 0.0019 21.1 3.5 25 20-44 28-53 (251)
137 TIGR00882 2A0105 oligosacchari 31.3 1.8E+02 0.0039 20.2 5.3 34 3-36 356-390 (396)
138 PRK11462 putative transporter; 31.1 2E+02 0.0044 20.9 5.7 40 4-43 159-206 (460)
139 TIGR00886 2A0108 nitrite extru 31.0 1.7E+02 0.0037 19.8 5.4 24 21-44 167-191 (366)
140 PRK03612 spermidine synthase; 30.9 1.7E+02 0.0036 22.2 5.2 34 2-35 156-191 (521)
141 PF07096 DUF1358: Protein of u 30.6 1.3E+02 0.0029 18.4 4.0 27 15-41 80-106 (124)
142 COG3817 Predicted membrane pro 30.2 1.2E+02 0.0027 21.2 4.1 38 20-57 125-162 (313)
143 TIGR00879 SP MFS transporter, 30.0 94 0.002 21.6 3.7 27 18-45 193-220 (481)
144 TIGR00924 yjdL_sub1_fam amino 29.9 2.1E+02 0.0046 20.9 5.6 31 3-33 153-184 (475)
145 KOG0254 Predicted transporter 29.9 1.3E+02 0.0027 22.2 4.5 25 19-44 207-232 (513)
146 TIGR00792 gph sugar (Glycoside 29.5 1.8E+02 0.0039 20.4 5.1 17 3-19 366-382 (437)
147 PRK10263 DNA translocase FtsK; 29.4 1.5E+02 0.0032 25.5 5.0 29 4-32 144-173 (1355)
148 TIGR01301 GPH_sucrose GPH fami 29.3 2.3E+02 0.005 21.2 5.7 26 21-46 451-476 (477)
149 PRK00191 tatA twin arginine tr 29.1 43 0.00094 19.1 1.5 10 34-43 13-22 (84)
150 PRK09556 uhpT sugar phosphate 29.1 1.1E+02 0.0023 22.1 3.9 34 5-38 400-446 (467)
151 PF05978 UNC-93: Ion channel r 28.8 1.5E+02 0.0033 18.6 5.6 27 5-31 51-77 (156)
152 COG2223 NarK Nitrate/nitrite t 28.7 1E+02 0.0022 22.9 3.7 39 3-41 361-401 (417)
153 PF13150 DUF3989: Protein of u 28.6 67 0.0015 18.3 2.3 15 21-35 33-47 (85)
154 PRK11128 putative 3-phenylprop 28.6 2E+02 0.0044 19.9 5.2 31 5-35 343-373 (382)
155 COG3104 PTR2 Dipeptide/tripept 28.6 2.3E+02 0.0049 21.7 5.5 35 2-36 166-201 (498)
156 KOG2615 Permease of the major 28.2 1E+02 0.0022 23.1 3.6 11 34-44 206-216 (451)
157 TIGR02718 sider_RhtX_FptX side 28.2 2.1E+02 0.0045 19.9 5.2 32 3-34 352-384 (390)
158 PF07172 GRP: Glycine rich pro 28.0 87 0.0019 18.1 2.7 10 20-29 3-12 (95)
159 PRK15075 citrate-proton sympor 26.8 1.5E+02 0.0033 21.1 4.3 29 16-44 186-214 (434)
160 PF01466 Skp1: Skp1 family, di 26.5 58 0.0012 17.8 1.7 16 44-59 43-58 (78)
161 PRK11902 ampG muropeptide tran 26.4 2.3E+02 0.005 19.8 5.9 37 8-45 147-185 (402)
162 TIGR00882 2A0105 oligosacchari 26.2 2.3E+02 0.005 19.7 6.5 27 18-44 159-186 (396)
163 COG4262 Predicted spermidine s 26.1 2E+02 0.0044 21.5 4.7 33 2-34 150-184 (508)
164 PF06783 UPF0239: Uncharacteri 26.0 77 0.0017 18.1 2.2 12 24-35 30-41 (85)
165 KOG4831 Unnamed protein [Funct 25.8 1.6E+02 0.0035 17.8 4.8 17 8-24 54-70 (125)
166 PRK11273 glpT sn-glycerol-3-ph 25.7 2.6E+02 0.0055 20.1 5.5 25 21-45 188-212 (452)
167 COG2223 NarK Nitrate/nitrite t 25.4 2.9E+02 0.0063 20.6 6.6 41 3-43 151-195 (417)
168 PF06570 DUF1129: Protein of u 25.3 73 0.0016 20.8 2.3 10 41-50 170-179 (206)
169 PF12732 YtxH: YtxH-like prote 25.1 1.2E+02 0.0027 16.2 3.0 26 30-55 9-34 (74)
170 PRK09584 tppB putative tripept 25.1 2.9E+02 0.0062 20.4 6.2 26 3-28 162-188 (500)
171 PF06166 DUF979: Protein of un 24.7 1.9E+02 0.0041 20.6 4.3 38 21-58 122-159 (308)
172 PF03904 DUF334: Domain of unk 24.2 91 0.002 21.2 2.6 9 24-32 204-212 (230)
173 PRK15462 dipeptide/tripeptide 23.9 2.8E+02 0.0061 20.9 5.4 31 2-32 149-180 (493)
174 PF11023 DUF2614: Protein of u 23.5 1.8E+02 0.0039 17.6 4.4 20 21-40 40-59 (114)
175 PF07672 MFS_Mycoplasma: Mycop 23.4 1.4E+02 0.0031 20.7 3.5 32 26-57 213-245 (267)
176 PLN02777 photosystem I P subun 23.3 2.2E+02 0.0047 18.4 4.1 36 21-56 125-160 (167)
177 PF05879 RHD3: Root hair defec 23.0 2.2E+02 0.0048 22.7 4.8 32 1-32 652-683 (742)
178 PF14147 Spore_YhaL: Sporulati 23.0 1.3E+02 0.0028 15.6 2.6 14 20-33 3-16 (52)
179 PF14007 YtpI: YtpI-like prote 22.6 1.7E+02 0.0036 16.8 4.8 15 2-16 39-53 (89)
180 PF05562 WCOR413: Cold acclima 22.5 2.4E+02 0.0052 18.6 5.1 25 1-25 66-90 (187)
181 PRK09669 putative symporter Ya 22.4 3E+02 0.0064 19.6 6.6 22 22-43 185-206 (444)
182 PF09878 DUF2105: Predicted me 21.9 98 0.0021 20.7 2.4 12 1-12 171-182 (212)
183 PF15168 TRIQK: Triple QxxK/R 21.8 1.5E+02 0.0034 16.6 2.8 22 23-44 53-74 (79)
184 KOG3626 Organic anion transpor 21.8 1.6E+02 0.0035 23.6 3.8 33 17-49 317-350 (735)
185 COG5264 VTC1 Vacuolar transpor 21.6 2.1E+02 0.0045 17.6 3.6 20 20-39 64-83 (126)
186 COG4811 Predicted membrane pro 20.9 1.3E+02 0.0028 18.9 2.6 28 25-52 10-37 (152)
187 PF07853 DUF1648: Protein of u 20.9 1E+02 0.0022 15.3 1.9 17 28-44 5-21 (51)
188 COG2274 SunT ABC-type bacterio 20.4 2E+02 0.0044 22.8 4.1 47 8-54 281-327 (709)
189 COG3366 Uncharacterized protei 20.4 3.3E+02 0.0072 19.5 5.8 28 6-33 104-131 (311)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.7e-11 Score=89.13 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcC
Q 040031 1 MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTH 59 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~ 59 (94)
|+++|++.++||++.+.+|..+|++|++.++++.+++|+++||||||+.+||.+.+++.
T Consensus 414 w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 414 WLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999988865
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=74.25 Aligned_cols=60 Identities=32% Similarity=0.607 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHHHhcCC
Q 040031 1 MLFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSF-FIYFFLPETKGIPIEEMGRVWKTHW 60 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~-~~~~~~pEtkg~~le~i~~~~~~~~ 60 (94)
|+.++++++.+|.+....+ .++|++|++++.+..+ ++++++|||||+++||+++.+....
T Consensus 441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 7899999999999999988 8889999999998888 8999999999999999999887643
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.82 E-value=5.7e-10 Score=79.03 Aligned_cols=56 Identities=38% Similarity=0.744 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 040031 1 MLFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW 56 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~ 56 (94)
|+++++.++++|++.+..+ ..+|++++++++++.+++++++|||||+++||++++|
T Consensus 395 ~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 395 RIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 5677888899999999988 8999999999999999999999999999999999876
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.41 E-value=4.2e-07 Score=65.85 Aligned_cols=53 Identities=28% Similarity=0.415 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHHh----------hh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031 1 MLFTFLVAQVFLNMLCH----------LK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGR 54 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~----------~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~ 54 (94)
|+++++.++++|++.+. .| ..+|++++++++++.++ ++++|||+|+++|||++
T Consensus 438 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 438 KAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred hhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 57888999999999873 34 46788999888887665 47889999999999875
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.34 E-value=2e-06 Score=61.38 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHH------Hhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcCCc
Q 040031 2 LFTFLVAQVFLNML------CHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHWF 61 (94)
Q Consensus 2 ~~~~i~~~~~p~~~------~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~~~ 61 (94)
+++++.++++|.+. +..| ...|.++++++++++++.+++.||||++++||+++.+++..+
T Consensus 411 ~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 411 IANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred HHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 56677778888665 3455 567888888888888888999999999999999999876543
No 6
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00011 Score=53.85 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHH-----hhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLC-----HLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW 56 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~-----~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~ 56 (94)
+++.+..+.|.++.+ .+| ..+|++++++++++.++. +++|||||+++||+++..
T Consensus 453 ~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 453 AGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEE 512 (538)
T ss_pred chHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChh
Confidence 467788899999999 778 789999999999886654 556799999999995533
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.97 E-value=0.0013 Score=46.06 Aligned_cols=50 Identities=44% Similarity=0.768 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
+++++.+.+++.+.+..| ...|++++++++++.+..+++.||++++++++
T Consensus 430 lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 430 LANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 456677777777777777 46788888898998888889999999998765
No 8
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.56 E-value=0.0031 Score=44.53 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGR 54 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~ 54 (94)
++..+.+.+.+.+.+..| ...+.+++++.++..+..+..+|++|++++||+++
T Consensus 359 ~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 359 TGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred hhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 355677788888888888 56777788887787788888999999999999876
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=95.72 E-value=0.021 Score=41.24 Aligned_cols=31 Identities=39% Similarity=0.746 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 20 FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
...+++++++.+++.+. .+++|||+|++++|
T Consensus 474 ~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~~ 504 (505)
T TIGR00898 474 FLPLVLFGGLALLAGIL-TLFLPETKGVPLPE 504 (505)
T ss_pred hhHHHHHHHHHHHHHHH-HHcCcCCCCCCCCC
Confidence 56777777777766554 46789999998764
No 10
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.55 E-value=0.047 Score=42.37 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 2 LFTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
+++++.+++.+.+.......+|++++++.+++.++ .+++|||+|+.|
T Consensus 695 lGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~~~l 741 (742)
T TIGR01299 695 AAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCccccc
Confidence 34555666666555432245667777766665554 446699999865
No 11
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=93.39 E-value=0.096 Score=38.38 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
++++.+++. |..... +.+-++|+++++++.+.+.++--|||||++
T Consensus 482 ggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 482 GGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 444444444 333333 567788999999999888888889999985
No 12
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=92.55 E-value=0.5 Score=27.21 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+..+.+.+.+.+.+..++ ..|.+.+.+.+++.+..+++.|||
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 99 GPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 344455555555555564 677777878788777777777775
No 13
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=90.83 E-value=1.1 Score=31.56 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 4 TFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
..+.+.+..++.+..| ...|.+.++++++..+..+.+.|||+.+-.
T Consensus 342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4455666667777777 355666677777777788899999987654
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=89.02 E-value=0.99 Score=32.86 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 040031 4 TFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPIE 50 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le 50 (94)
+.+.+++..++.+..+ ...+++.+.+++++.+ ..+++|||++..++
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~~ 438 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPLK 438 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCCC
Confidence 4445555555555444 2333444444444444 44567999887654
No 15
>PRK11663 regulatory protein UhpC; Provisional
Probab=88.67 E-value=0.68 Score=33.08 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
+++++.+.++..+.+..| ..+|.+.+++++++.+..+.+.++.+++
T Consensus 384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 345566677777888778 5778888888888777777777666554
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=87.99 E-value=2 Score=30.31 Aligned_cols=43 Identities=12% Similarity=-0.012 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+..+...+-+.+....|| ..|++.+++.++..+..++++||..
T Consensus 126 G~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 126 GIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344555556666666785 6777778888888888888999864
No 17
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=87.86 E-value=3.1 Score=30.45 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
++.++.+.....+.+.+| ..+|++.+++.+...++.++.++..+.
T Consensus 360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 456788889999999999 679999999988888888777766544
No 18
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=86.48 E-value=3.1 Score=29.75 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhh------h-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 3 FTFLVAQVFLNMLCHLK------F-GLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g------~-~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
+..+.+.+...+.+..| + ..|.+.+++.+++.+..+++++|+++.
T Consensus 357 g~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 357 GSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 44566677777777643 2 567778888888888888888887544
No 19
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=85.78 E-value=2.6 Score=30.83 Aligned_cols=26 Identities=35% Similarity=0.796 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 26 FAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 26 ~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
++.+..+..+...+++|||+++.+.+
T Consensus 477 ~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 477 FGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCCch
Confidence 56677777777779999999999855
No 20
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=85.32 E-value=4.5 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=24.4
Q ss_pred HHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 11 FLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 11 ~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
-..+.+..|| ..|++.+++.++..+..++++|||+.
T Consensus 160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3334445564 67878887777777766778899754
No 21
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=84.56 E-value=4.4 Score=28.41 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=24.1
Q ss_pred HHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 12 LNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 12 p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
..+.+..|+ ..|++.+++++++.+..++..||++.
T Consensus 158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 334444563 67777888877777777778898764
No 22
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=84.08 E-value=5.9 Score=27.13 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
.+.+.+...+.+..|+ ..|++.+++.++..+..+++.||++.+
T Consensus 143 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 143 AVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3444555555566674 667777777777777777778887543
No 23
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=83.48 E-value=6.1 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.493 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+.+.+...+.+..|+ ..|++.+.++++..+..++++||++
T Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 129 LLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 3444444555555674 6777777777777777777888864
No 24
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=83.13 E-value=2.7 Score=30.04 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 6 LVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 6 i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+.+.+.+.+..| ..+|.+.+++++++.+...+.+||.|
T Consensus 397 ~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 397 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567777778777 57777888888888888889999865
No 25
>PRK15011 sugar efflux transporter B; Provisional
Probab=82.66 E-value=6.1 Score=27.75 Aligned_cols=42 Identities=17% Similarity=0.390 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
.+.+.+...+.+..|+ ..|.+.+..+++..+.+++++||.+.
T Consensus 157 ~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 157 VIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 3334444444456674 56777777777777777888888643
No 26
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=81.91 E-value=6.6 Score=26.82 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=24.0
Q ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 10 VFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 10 ~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+...+.+..|+ ..|++.+.++++..+..++++||.+
T Consensus 144 ~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 144 LAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 33344455664 6778888777777777777788854
No 27
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=79.94 E-value=8.3 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 15 LCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 15 ~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
.+..|+ ..|.+.++++++..++.++++||++.
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344564 66778887777777777788888753
No 28
>TIGR00895 2A0115 benzoate transport.
Probab=79.91 E-value=3 Score=28.51 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
+..+.+.+.+.+.+..|+ ..|.+.+.++++..+..+.++||+..
T Consensus 153 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (398)
T TIGR00895 153 GAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID 197 (398)
T ss_pred HHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence 344555566666666674 55666666667777777788888753
No 29
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=78.60 E-value=11 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 6 LVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 6 i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
+.+.+.+.+.+..|+ ..|++.+.+++++.+++....||+++
T Consensus 159 ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 159 IAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 344444555556674 67777777766666666666788643
No 30
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=78.28 E-value=3.5 Score=30.10 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
.+.+.+...+.+..|| +.|++...++++..+..++++|+.+++
T Consensus 145 ~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~ 188 (495)
T PRK14995 145 AFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR 188 (495)
T ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3444445555566674 677777777777777778888886443
No 31
>TIGR00893 2A0114 d-galactonate transporter.
Probab=78.09 E-value=10 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
..+.+.+...+.+..|+ ..|.+.+.+.++..+..+++.||++.
T Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 131 GIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 33444445555566663 66777777777666666777777654
No 32
>PRK03545 putative arabinose transporter; Provisional
Probab=77.79 E-value=12 Score=26.04 Aligned_cols=38 Identities=16% Similarity=0.034 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 8 AQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 8 ~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+...+.+..|+ ..|++.+.++++..+..+.++||.+
T Consensus 150 ~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 150 LPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3334444455674 6788888887777777777777653
No 33
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=76.55 E-value=11 Score=27.14 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH-hhcccCC
Q 040031 7 VAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIY-FFLPETK 45 (94)
Q Consensus 7 ~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~-~~~pEtk 45 (94)
.+.+...+.+..| ...|.+.+++++++++... +..+|+|
T Consensus 400 g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 400 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred hhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3566777778777 4677777777777776654 4445543
No 34
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=76.27 E-value=11 Score=20.93 Aligned_cols=19 Identities=0% Similarity=0.120 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 040031 3 FTFLVAQVFLNMLCHLKFG 21 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~~ 21 (94)
.+.+++++..++.+.+...
T Consensus 19 ~~~iisfi~Gy~~q~~~~~ 37 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSYT 37 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776533
No 35
>PRK03893 putative sialic acid transporter; Provisional
Probab=75.30 E-value=8.8 Score=27.59 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHH-HHHHHHHHHHhhcccC
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAF-FMLVMSFFIYFFLPET 44 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~-~~~~~~~~~~~~~pEt 44 (94)
++.+.+.+...+.+..|+ ..+.+.++ +.+.+.+.+.++.|+.
T Consensus 414 g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (496)
T PRK03893 414 GGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSR 457 (496)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 445666666777777773 44544443 3344444455555654
No 36
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.89 E-value=14 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLKFGLFLFFAFFMLV 32 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~ 32 (94)
.+.++.+++.+..+.+++.+|...+++.+-
T Consensus 34 i~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t 63 (101)
T KOG4112|consen 34 IGAIVGFIYGFAQQQLSVTVYIVGAGFVFT 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877767666655443
No 37
>PRK15011 sugar efflux transporter B; Provisional
Probab=74.78 E-value=14 Score=25.92 Aligned_cols=41 Identities=7% Similarity=0.172 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
++.+.+.+...+.+..|+ ..|.+.+.+.++ ..+++++.|||
T Consensus 352 g~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 393 (393)
T PRK15011 352 GWIIAGSLAGIVAEIWNYHAVFWFALVMIIA-TLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHhhcCC
Confidence 445566666777776774 444444444444 44555566764
No 38
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=74.43 E-value=9.1 Score=28.37 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 12 LNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 12 p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
..+....| ..+|.+-++..++..++..+++||+...+.+.
T Consensus 169 ~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 169 GYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 33344455 57788888888899999999999987766544
No 39
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=74.03 E-value=14 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcc-cCCCCCHHH
Q 040031 28 FFMLVMSFFIYFFLP-ETKGIPIEE 51 (94)
Q Consensus 28 ~~~~~~~~~~~~~~p-Etkg~~le~ 51 (94)
.+.+++.+.++.+.| ||+++++.+
T Consensus 106 ii~i~s~~~i~~~APv~~~~kpi~~ 130 (184)
T smart00793 106 GLFLIGLVLIYIYAPADTEKQPVIP 130 (184)
T ss_pred HHHHHHHHHHHhcCCcccccCCCCC
Confidence 334556667788888 788888644
No 40
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=73.75 E-value=14 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.8
Q ss_pred Hhhhh-HHHHHHHHHHHHHHHHHHhhcc
Q 040031 16 CHLKF-GLFLFFAFFMLVMSFFIYFFLP 42 (94)
Q Consensus 16 ~~~g~-~~f~i~~~~~~~~~~~~~~~~p 42 (94)
+.+|| .+|++.++++++..+..+..+|
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44575 8999999999999999999999
No 41
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=73.51 E-value=16 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.561 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcc-cCCCCCHH
Q 040031 30 MLVMSFFIYFFLP-ETKGIPIE 50 (94)
Q Consensus 30 ~~~~~~~~~~~~p-Etkg~~le 50 (94)
.+++.+.++.+.| ||+++++.
T Consensus 120 ~~~s~iii~~yAP~dt~nkPi~ 141 (210)
T PRK01100 120 FGFILLNLFLYAPADTESLPLI 141 (210)
T ss_pred HHHHHHHHHhcCCcCCccCCCC
Confidence 3445556778888 79998854
No 42
>PRK11663 regulatory protein UhpC; Provisional
Probab=72.78 E-value=15 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+.+.+.+...+.+..|+ ..|.+.++++++..++.++++||+
T Consensus 160 ~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 160 GALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444445555566674 667677766665555566667764
No 43
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=71.78 E-value=23 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 6 LVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 6 i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+.+.+...+.+..| ...|++.+.+.++..+..++++||.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 157 LGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34444455555566 3677777777777777777777765
No 44
>PRK09528 lacY galactoside permease; Reviewed
Probab=71.34 E-value=21 Score=25.23 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhccc
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
++.+.+.....+.+..| ..+|.+.+++.++..++.++.+++
T Consensus 364 g~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 364 GAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455666667777777 467777777777766666666554
No 45
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=71.04 E-value=33 Score=25.46 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHh-hh-hHHHHHHHHHHHHHHHHHHhhc---c-cCCCCCHHHHHHHHhc
Q 040031 9 QVFLNMLCH-LK-FGLFLFFAFFMLVMSFFIYFFL---P-ETKGIPIEEMGRVWKT 58 (94)
Q Consensus 9 ~~~p~~~~~-~g-~~~f~i~~~~~~~~~~~~~~~~---p-Etkg~~le~i~~~~~~ 58 (94)
-+.+.+-+. +| ..+|.++++++++..+.-+++. | +.+..+.+|.+.+-++
T Consensus 182 p~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~ 237 (466)
T KOG2532|consen 182 PVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKG 237 (466)
T ss_pred HhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhc
Confidence 355556666 78 4888888887776655443333 3 2466777776665544
No 46
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=70.29 E-value=22 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=19.9
Q ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 13 NMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 13 ~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+.+..|+ ..|++.+++.++..+...++.||++
T Consensus 154 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 154 LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 33444564 5666666666655555667788864
No 47
>PRK03545 putative arabinose transporter; Provisional
Probab=69.09 E-value=17 Score=25.38 Aligned_cols=39 Identities=13% Similarity=-0.121 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhc
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
+..+.+.+.+.+.+..| ..+|.+.+.+.+++.++.+.+.
T Consensus 341 g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 341 GIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677777778888 5778888888888777766655
No 48
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=69.07 E-value=12 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 22 LFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 22 ~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
+|++...++++.+.+.+.+.|+|.-++-..
T Consensus 62 ~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~ 91 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAYKPDTSIQTWAR 91 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444434445555566677889998766433
No 49
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=67.52 E-value=3.4 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 9 QVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 9 ~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
.+...+.+..|+ ..|++.+.++++..+..+++.||++.+
T Consensus 144 ~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 144 TLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA 183 (485)
T ss_pred ccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence 333444445563 567776767777777777778876543
No 50
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=67.52 E-value=49 Score=24.63 Aligned_cols=40 Identities=5% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC--CCCHHHHHHHHhcCC
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETK--GIPIEEMGRVWKTHW 60 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtk--g~~le~i~~~~~~~~ 60 (94)
.++++++.+.++..+..++++++.+ ..++.+.-..++++.
T Consensus 212 ~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~ 253 (462)
T PRK15034 212 NAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLH 253 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCc
Confidence 4456777777777777777776643 445666666666543
No 51
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=67.35 E-value=29 Score=22.00 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcc-cCCCCCHHH
Q 040031 25 FFAFFMLVMSFFIYFFLP-ETKGIPIEE 51 (94)
Q Consensus 25 i~~~~~~~~~~~~~~~~p-Etkg~~le~ 51 (94)
+...+.+++.+..+.+.| |++++++++
T Consensus 103 ~~~~~~~~~~~~i~~~aPv~~~~kpl~~ 130 (185)
T PF04647_consen 103 VIIILFIISFIIIIIYAPVDTPNKPLDS 130 (185)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcCCh
Confidence 333445566667777888 788887743
No 52
>PRK12307 putative sialic acid transporter; Provisional
Probab=67.07 E-value=15 Score=25.76 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 3 FTFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
++.+.+.+...+.+..| ...+++.++.++++.....++.|++
T Consensus 369 ~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 369 SGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 44455555556666666 2345555555555555555556654
No 53
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=67.05 E-value=22 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=21.4
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 18 LKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 18 ~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
.|| .+|++.++..++..++.++++||++.
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 464 67777777777777777888899864
No 54
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=66.64 E-value=38 Score=26.80 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 20 FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
|..++++.++..+..++.++++||+
T Consensus 333 WR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 333 WRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444445555555556677889998
No 55
>PRK10091 MFS transport protein AraJ; Provisional
Probab=65.15 E-value=24 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=20.4
Q ss_pred Hhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 16 CHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 16 ~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+..|+ ..|.+.+.++++..+..++++||.+
T Consensus 152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44564 6777777777776666677788854
No 56
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=64.74 E-value=19 Score=22.62 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhcccC-CCCCHHH
Q 040031 24 LFFAFFMLVMSFFIYFFLPET-KGIPIEE 51 (94)
Q Consensus 24 ~i~~~~~~~~~~~~~~~~pEt-kg~~le~ 51 (94)
.-.|++.++.+++....+||. |+||.+|
T Consensus 99 ~~IAg~~lv~filmvVLiPEpg~QRS~~D 127 (144)
T PF01350_consen 99 GQIAGVLLVFFILMVVLIPEPGKQRSQQD 127 (144)
T ss_pred HHhHHHHHHHHHHHHhcccCCCCcCCccc
Confidence 344667777777777888986 5666544
No 57
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=64.66 E-value=20 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=18.4
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 17 HLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 17 ~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
..++ ..|++.+++.++..+...+++||+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3443 4666666666666666677788864
No 58
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=63.90 E-value=8.3 Score=25.88 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=18.2
Q ss_pred HHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 15 LCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 15 ~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+..|+ ..|++.+.++++..+....+.++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 145 ISYFGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp CCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred hhccccccccccccchhhhhhhhHhhhhhhcc
Confidence 334453 6788888888877775556665443
No 59
>TIGR00901 2A0125 AmpG-related permease.
Probab=63.85 E-value=32 Score=23.49 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhh--------h-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 6 LVAQVFLNMLCHLK--------F-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 6 i~~~~~p~~~~~~g--------~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+.+...+....| | ..|++.+++.++..+..++..||++
T Consensus 134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33444444445555 5 3555566555554444444567753
No 60
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=63.55 E-value=42 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 6 LVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 6 i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+.+.....+.+..|+ ..|++.+++.++..+..++..|++
T Consensus 148 ~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 148 GGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 333444456667784 678888877776666655555543
No 61
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=63.36 E-value=27 Score=24.30 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 5 FLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
.+.+.+...+.+..| ...|.+.+++++++.+..++ +++.++
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccc
Confidence 344455555666667 46666666666666555544 344333
No 62
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=63.11 E-value=26 Score=25.93 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
++.+++.+...+.+..| ..++++....|.+..++..++...+||+.-
T Consensus 370 GGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~~~~~~~k~~~~ 417 (422)
T COG0738 370 GGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLS 417 (422)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 45666777777777777 455665555555555444444433455443
No 63
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=63.02 E-value=57 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 19 KFGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 19 g~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+|...++++++..+..++..+++||+
T Consensus 202 ~WR~~~~~~~ip~~i~~~~~~~lpES 227 (502)
T TIGR00887 202 MWRILIGFGAVPALLALYFRLTIPET 227 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56444455555555555566789998
No 64
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=61.57 E-value=41 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 5 FLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+.+.+...+.+..| +...++.+++..+..++.....||++
T Consensus 150 ~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 150 VVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 333444444444444 43333333443444445556778864
No 65
>PRK12382 putative transporter; Provisional
Probab=60.77 E-value=40 Score=23.44 Aligned_cols=39 Identities=8% Similarity=-0.104 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhc
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
++.+.+.+...+.+..| ...|.+.+++.+++.+..+++.
T Consensus 350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 44566667777777777 4667777777766666555443
No 66
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=59.86 E-value=23 Score=26.51 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 040031 2 LFTFLVAQVFLNMLCHLK 19 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g 19 (94)
+++++++.++|++.+.+|
T Consensus 160 ~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 160 LGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456888999999998765
No 67
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=59.60 E-value=44 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhccc
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
..+.+.+.+.+.+..|+ .+|++.+++.+++.+..++..++
T Consensus 156 ~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~ 196 (455)
T TIGR00892 156 LSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPV 196 (455)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555666666774 77888887777665554444443
No 68
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=59.38 E-value=35 Score=24.96 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+..+.+.+...+.+..| ...|++.+++.++. .+..+++||.+
T Consensus 170 G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 170 GGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 44555566666677777 46676777666665 55667788864
No 69
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=58.03 E-value=49 Score=24.44 Aligned_cols=44 Identities=16% Similarity=0.346 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 2 LFTFLVAQVFLNMLCHLK---FGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g---~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
++++..++++|.+.+.+| .+...+..=...+....+.++.|...
T Consensus 304 v~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 304 VFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457888999999999988 23333333333333444556666543
No 70
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=57.38 E-value=3.7 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 20 FGLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
|...+.+.++..+...+...++||+..
T Consensus 183 W~~l~~~~~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 183 WPYLLAFPLIPALLQLALLPFLPESPK 209 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 444444455555555677889999843
No 71
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=56.37 E-value=42 Score=22.60 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=19.8
Q ss_pred Hhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 16 CHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 16 ~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
...++ ..|.+.+.+.++..+..+++.||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 34453 5677777777776677777777764
No 72
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=55.95 E-value=48 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=20.0
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 18 LKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 18 ~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.|| ..|++.+.++++..+..++++||+.
T Consensus 182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 182 NDWHAALYFPAICAIIVALFAFAMMRDTP 210 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 354 6677777777777777778888753
No 73
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.53 E-value=44 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040031 2 LFTFLVAQVFLNMLCHL 18 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~ 18 (94)
+.+.++...+.++++.+
T Consensus 53 IsGilVGa~iG~llD~~ 69 (116)
T COG5336 53 ISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56788889999999976
No 74
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=54.41 E-value=48 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFI 37 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~ 37 (94)
++++.+.+...+.+..| ..+|++.+++.+++.+..
T Consensus 362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777 567777776666655543
No 75
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=54.34 E-value=49 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHhhhh-HHHHHHHHHHHHHHHHHHhhccc
Q 040031 15 LCHLKF-GLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 15 ~~~~g~-~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
.+..|+ ..|.+.++++++..+..++++++
T Consensus 150 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 150 INLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 334454 56777777777766666666654
No 76
>PF13347 MFS_2: MFS/sugar transport protein
Probab=54.34 E-value=25 Score=24.98 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhhccc
Q 040031 2 LFTFLVAQVFLNMLCHLK--------FGLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g--------~~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
+++++++.+.+.+.+..| ...+++++++.+++.+..++..+|
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 345566777887776554 133455566666666666677777
No 77
>PRK11043 putative transporter; Provisional
Probab=54.24 E-value=72 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhccc
Q 040031 7 VAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 7 ~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
.+.+...+.+..|+ ..|++.+.+.++..+..++..++
T Consensus 146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33344444555664 56666666666655544443333
No 78
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.02 E-value=14 Score=26.66 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHL-KFGLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~-g~~~f~i~~~~~~~~~~~~~ 38 (94)
..++.++++-+.+... .++.||+|+.++.++.+|..
T Consensus 22 ~~~llp~~~~pfls~~qk~y~~f~f~~iss~gwff~i 58 (401)
T PF06785_consen 22 AAFLLPLVCYPFLSDSQKNYGYFVFSIISSLGWFFAI 58 (401)
T ss_pred HHHHHHHhHhhhcCHHHHhcceeehHHHHHhHHHHHh
Confidence 3455555544444333 35677888888888877654
No 79
>PRK03893 putative sialic acid transporter; Provisional
Probab=53.02 E-value=43 Score=24.07 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 3 FTFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
++++.+.+...+.+..|+...+.++++.++..++.....||++
T Consensus 156 g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 156 GAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 3344455555555556653333334443333344445567653
No 80
>PRK10054 putative transporter; Provisional
Probab=53.02 E-value=52 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Q 040031 1 MLFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~ 38 (94)
|++..+.+.....+.+..| ...|.+.+.+..+..++..
T Consensus 343 ~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 343 WLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 3556777778888888888 4566665555554444443
No 81
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=52.68 E-value=88 Score=22.79 Aligned_cols=25 Identities=8% Similarity=0.276 Sum_probs=16.3
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhccc
Q 040031 19 KF-GLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 19 g~-~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
|| .+|++.++++++..+..+++.++
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 54 67777787777666666555444
No 82
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=52.58 E-value=38 Score=18.51 Aligned_cols=36 Identities=31% Similarity=0.618 Sum_probs=19.5
Q ss_pred HHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 11 FLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 11 ~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
.-.|+...|+ .++++-..+.++++.++-..+||-+.
T Consensus 21 ~~qMlkGag~Aav~~~~~~~~l~~~~~iG~~LPe~s~ 57 (67)
T PF11511_consen 21 LFQMLKGAGYAAVFFLGLWFLLVALYFIGLLLPERSR 57 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTCS
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 3345555554 44444444445555566778888543
No 83
>PRK10054 putative transporter; Provisional
Probab=52.22 E-value=46 Score=23.47 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 7 VAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 7 ~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+.+...+. ..| ...|.+.+++.+++.+.+.+++|+++
T Consensus 148 gp~l~~~l~-~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 148 GPPLGTLLV-MQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334333 245 35677777776666666666677653
No 84
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=52.11 E-value=47 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhc
Q 040031 4 TFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
..+.+.+...+.+..| ...|.+.+++.+++.++.++..
T Consensus 360 ~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 360 NVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666 4677777777777766655544
No 85
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=51.92 E-value=71 Score=22.57 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+.+.+...+. ..|+ ..|++.+.++++..+....+.||.
T Consensus 149 ~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 149 VIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444444444 4563 667776766666655555667764
No 86
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=51.60 E-value=58 Score=22.14 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFF 36 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~ 36 (94)
+..+.+.+...+.+..| ...|.+.+++++++.+.
T Consensus 335 g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 369 (375)
T TIGR00899 335 GWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFC 369 (375)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 34455666666666666 35566666555554443
No 87
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=50.82 E-value=40 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhccc
Q 040031 3 FTFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
++|+.+.++....+..| ...|.+|.+..+++.+..|.++-+
T Consensus 414 Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 414 GGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred ccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35555666666666656 355777777778888877776543
No 88
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=50.17 E-value=64 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 040031 4 TFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFF 36 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~ 36 (94)
..+.+.+-..+.+..|..+|++.+++.+++.+.
T Consensus 342 ~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 342 IAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 445566667777777777788888877766443
No 89
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=49.83 E-value=41 Score=23.36 Aligned_cols=25 Identities=4% Similarity=0.125 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHH
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAF 28 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~ 28 (94)
..+.+.+.+.+.+.+|. ..+.+++.
T Consensus 336 ~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 336 QVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHH
Confidence 45556677777777773 33334443
No 90
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=49.18 E-value=1.1e+02 Score=23.03 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=24.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcccC------CCCCHHHH
Q 040031 16 CHLKFGLFLFFAFFMLVMSFFIYFFLPET------KGIPIEEM 52 (94)
Q Consensus 16 ~~~g~~~f~i~~~~~~~~~~~~~~~~pEt------kg~~le~i 52 (94)
.+.||..++++..+-+..+...++++||. +|..-+.+
T Consensus 225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAl 267 (528)
T KOG0253|consen 225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKAL 267 (528)
T ss_pred HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHH
Confidence 34577666666666666666778889997 55554443
No 91
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=49.11 E-value=6.3 Score=26.42 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh
Q 040031 26 FAFFMLVMSFFIYFF 40 (94)
Q Consensus 26 ~~~~~~~~~~~~~~~ 40 (94)
.+++.+++..++.++
T Consensus 84 l~i~~iv~vmf~~lw 98 (233)
T PF10643_consen 84 LSIFVIVAVMFASLW 98 (233)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444443
No 92
>PRK12307 putative sialic acid transporter; Provisional
Probab=48.90 E-value=55 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.++.+.+.+.+.+..|+ .+|++ +++.++..++.....||++
T Consensus 155 ~~~~~~l~~~l~~~~~w~~~f~i-~~~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 155 NIIAAYFMPSFAEAYGWRAAFFV-GLLPVLLVIYIRARAPESK 196 (426)
T ss_pred HHHHHHHHHHHcccCCHHHHHHH-HHHHHHHHHHHHHHCCCCh
Confidence 33444444555555665 44443 3333333333334456653
No 93
>TIGR00893 2A0114 d-galactonate transporter.
Probab=48.60 E-value=31 Score=23.23 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLCHLK-F-GLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~-~~f~i~~~~~~~~~~~~~ 38 (94)
+++.+.+.+.+.+.+..| + ..|.+.+++.+++.+..+
T Consensus 358 ~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 358 LGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666 3 455555555555554443
No 94
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=48.58 E-value=12 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHH------hhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 3 FTFLVAQVFLNMLC------HLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 3 ~~~i~~~~~p~~~~------~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
++++.+++..-++. ..|| +.|++-++++++..+++++++|+-.-
T Consensus 182 g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 182 GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 44445544444332 1244 78899999999999999999997544
No 95
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=48.25 E-value=91 Score=22.52 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhh-hH------HHHHHHHHHHHHHHHHHhhcccC
Q 040031 2 LFTFLVAQVFLNMLCHLK-FG------LFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~------~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+++.+.+++-..+.+..| .. .+.+.+++.++..+..+++.+|+
T Consensus 349 lg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 349 LGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 356677778888888776 22 23444444445555555555554
No 96
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=47.93 E-value=73 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.176 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
..+.+++++.++..+..+++.+|..
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4566777777777666777777753
No 97
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=46.06 E-value=85 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 6 LVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 6 i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+.+-..+....|+..+++.+++..+..+.+++++|+++
T Consensus 159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 159 LGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 3344444445555654444444454454555666677653
No 98
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=46.02 E-value=1e+02 Score=22.85 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhc
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
+++.+.++++..++...+ .....++++.++++.+.-|+++
T Consensus 160 ~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888777 4556677778888877655553
No 99
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=45.70 E-value=29 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 040031 14 MLCHLKFGLFLFFAFFMLVMSFFIYFFLP 42 (94)
Q Consensus 14 ~~~~~g~~~f~i~~~~~~~~~~~~~~~~p 42 (94)
+++-+|++.|.+++...+.++++...+.|
T Consensus 193 ildvlgpwp~Yivs~v~ilca~~f~lyll 221 (236)
T COG5522 193 ILDVLGPWPFYIVSEVLILCAVWFLLYLL 221 (236)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHh
Confidence 45667877788888777777776555544
No 100
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=45.69 E-value=90 Score=20.88 Aligned_cols=34 Identities=12% Similarity=-0.039 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~ 38 (94)
.+.+.+...+.+..|+ ..|++.+...+++.+..+
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556664 455555555555444433
No 101
>PRK09952 shikimate transporter; Provisional
Probab=44.48 E-value=95 Score=22.24 Aligned_cols=42 Identities=2% Similarity=0.074 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhh--h-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 3 FTFLVAQVFLNMLCHLK--F-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g--~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
++.+.+.+...+.+..+ + ..+.+.+++.+++.+. .+.++||+
T Consensus 392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~~ 436 (438)
T PRK09952 392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHccccc
Confidence 34455555556655432 2 3344444444444443 34557653
No 102
>PRK09528 lacY galactoside permease; Reviewed
Probab=44.32 E-value=84 Score=22.16 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 5 FLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+.+.+...+.+ .+ ...|++.+++++++.+..++..||.
T Consensus 155 ~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 155 ALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred HHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 344444444443 34 4667776766666665555555543
No 103
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=44.15 E-value=65 Score=22.39 Aligned_cols=36 Identities=11% Similarity=-0.053 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-F-GLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~-~~f~i~~~~~~~~~~~~~ 38 (94)
++++.+.+...+.+..+ + ..+++.+.+.+++.+..+
T Consensus 356 g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 356 GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666544 2 333344444444443333
No 104
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=43.51 E-value=52 Score=21.77 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFI 37 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~ 37 (94)
+..+.+.+...+.+..| ...|.+.+++.+++.+..
T Consensus 313 ~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 44555666666666666 456666666666655543
No 105
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=43.45 E-value=56 Score=23.40 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhh-hh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 5 FLVAQVFLNMLCHL-KF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 5 ~i~~~~~p~~~~~~-g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+.+.+...+.+.. |+ .+|.+.+++.++..+..+.+.+|.
T Consensus 181 ~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 181 FIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 33444444555553 64 567777776666655555555553
No 106
>PRK11010 ampG muropeptide transporter; Validated
Probab=43.21 E-value=85 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
..+.+.+...+.+..|+ ..|.+.+++++.+.+..+ +++++
T Consensus 365 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~ 405 (491)
T PRK11010 365 RVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 34455566667777785 556666666666544443 33443
No 107
>PF15444 TMEM247: Transmembrane protein 247
Probab=42.66 E-value=88 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.242 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040031 20 FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
-.+||+|+--.++++..+.+++
T Consensus 191 emvfflfskhylfciaaillcl 212 (218)
T PF15444_consen 191 EMVFFLFSKHYLFCIAAILLCL 212 (218)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4677887766666555555544
No 108
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=42.40 E-value=15 Score=23.35 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=15.2
Q ss_pred HHhhcccCCCCCHHHHHHHH
Q 040031 37 IYFFLPETKGIPIEEMGRVW 56 (94)
Q Consensus 37 ~~~~~pEtkg~~le~i~~~~ 56 (94)
.++|+|||+|.+-+-++..-
T Consensus 98 ~llFG~Es~GLP~~i~~~~~ 117 (155)
T COG0219 98 YLLFGPESRGLPEEILDAAP 117 (155)
T ss_pred EEEECCCCCCCCHHHHHhCc
Confidence 46789999999977666533
No 109
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=42.34 E-value=83 Score=23.41 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 040031 2 LFTFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFLPETKGIP 48 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~ 48 (94)
..+++.++++..+.+..| ...++...++.++++++ ...++..||+.
T Consensus 427 ~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~~~g~~ 474 (477)
T PF11700_consen 427 ASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccchhhhh
Confidence 356778888888888777 23344444444444444 36667666653
No 110
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=41.56 E-value=69 Score=22.81 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHhhh-hH-HHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 15 LCHLK-FG-LFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 15 ~~~~g-~~-~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
++..| +. .+++.+++.+++.+..++ .+++|++.
T Consensus 396 l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 396 LKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGM 430 (432)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhccccc
Confidence 34445 33 334444444444444333 56677764
No 111
>PRK10504 putative transporter; Provisional
Probab=41.37 E-value=1.2e+02 Score=21.71 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 8 AQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 8 ~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+...+.+..|+ ..|.+...+++++.+......|+.+
T Consensus 151 ~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 151 PALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3444444555564 5677666666666666666777653
No 112
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=40.43 E-value=1.1e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhh
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFF 40 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~ 40 (94)
+.++.+.+.|++.++.|| ..|++ ..++++..+..+.+
T Consensus 155 g~~~g~~l~g~l~~~~gw~~~F~i-~~i~~~~~~~~~~~ 192 (489)
T PRK10207 155 GSLISLSLAPVIADKFGYSVTYNL-CGAGLIIALLVYFA 192 (489)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHH-HHHHHHHHHHHHHH
Confidence 445566777888888885 55555 33344433433433
No 113
>PRK03633 putative MFS family transporter protein; Provisional
Probab=40.28 E-value=1.1e+02 Score=21.20 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSF 35 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~ 35 (94)
+..+.+.+...+.+..| ...|.+.+.+.+++.+
T Consensus 333 G~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 333 GSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 34455555556666666 4556666555554433
No 114
>PRK10489 enterobactin exporter EntS; Provisional
Probab=40.00 E-value=1.3e+02 Score=21.11 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 6 LVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 6 i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+.+...+.+..|+ ..|++.+...+++ ....+.+|+++
T Consensus 161 ~g~~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 200 (417)
T PRK10489 161 ISPALGGLLIAAGGVAWNYGLAAAGTFIT-LLPLLRLPALP 200 (417)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHhCCCCC
Confidence 334444445555563 4454444444333 34455667653
No 115
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=39.30 E-value=50 Score=22.29 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.4
Q ss_pred HHHHHH
Q 040031 7 VAQVFL 12 (94)
Q Consensus 7 ~~~~~p 12 (94)
...+||
T Consensus 124 a~~lFP 129 (224)
T PF03839_consen 124 AICLFP 129 (224)
T ss_pred HHHhhh
Confidence 334444
No 116
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=39.07 E-value=1.1e+02 Score=19.81 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.4
Q ss_pred CCCHHH
Q 040031 46 GIPIEE 51 (94)
Q Consensus 46 g~~le~ 51 (94)
|.+-+|
T Consensus 64 gls~~e 69 (199)
T PF10112_consen 64 GLSDRE 69 (199)
T ss_pred CCChhH
Confidence 334333
No 117
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=38.85 E-value=1.8e+02 Score=23.19 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=21.1
Q ss_pred HHHHhhcccCCCCCHHHHHHHHhcCCccccccC
Q 040031 35 FFIYFFLPETKGIPIEEMGRVWKTHWFWSHYVG 67 (94)
Q Consensus 35 ~~~~~~~pEtkg~~le~i~~~~~~~~~~~~~~~ 67 (94)
+.+|..+.....+.+.||..+-...++|.-+.+
T Consensus 241 ~~~w~lfr~p~~~~lqeVhClrG~PkrwgLfgE 273 (705)
T PF07095_consen 241 WGLWLLFRPPSPRKLQEVHCLRGTPKRWGLFGE 273 (705)
T ss_pred HHHHHHhcCCccccchhhhcccCccceeeeecc
Confidence 344555556668888888776666666665553
No 118
>PRK11010 ampG muropeptide transporter; Validated
Probab=38.56 E-value=1.3e+02 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHH-hhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 5 FLVAQVFLNMLC-HLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 5 ~i~~~~~p~~~~-~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.+.+.+...+.+ ..|| ..|++.+++.++..+.. +++||+.
T Consensus 157 llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~ 198 (491)
T PRK11010 157 LVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 344444455555 3574 66777776666654433 3578864
No 119
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=38.40 E-value=60 Score=21.82 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Q 040031 4 TFLVAQVFLNMLCHLKF-GLFLFFAFFML 31 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~-~~f~i~~~~~~ 31 (94)
+.+.+.+...+.+..|+ ..|.+.+++.+
T Consensus 344 ~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 344 GIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred HHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 34444444555555552 34444444333
No 120
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=37.85 E-value=17 Score=22.34 Aligned_cols=16 Identities=31% Similarity=0.489 Sum_probs=12.4
Q ss_pred cCCCCCHHHHHHHHhc
Q 040031 43 ETKGIPIEEMGRVWKT 58 (94)
Q Consensus 43 Etkg~~le~i~~~~~~ 58 (94)
|.||.+-+||++.++.
T Consensus 31 ~sKGLt~~EI~~al~~ 46 (136)
T PF04695_consen 31 ESKGLTEEEIDEALGR 46 (136)
T ss_dssp HHCT--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHh
Confidence 6799999999999975
No 121
>PRK14397 membrane protein; Provisional
Probab=37.77 E-value=1.3e+02 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=7.0
Q ss_pred HHHHHHHHhcC
Q 040031 49 IEEMGRVWKTH 59 (94)
Q Consensus 49 le~i~~~~~~~ 59 (94)
.+.|.++.++.
T Consensus 177 r~NI~RL~~G~ 187 (222)
T PRK14397 177 RENIGRLARGE 187 (222)
T ss_pred HHHHHHHHcCC
Confidence 34777777653
No 122
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=37.55 E-value=1.4e+02 Score=20.75 Aligned_cols=39 Identities=5% Similarity=0.073 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+.+.+-..+.+..|+ ..|++.+.+.++. +...++.||+
T Consensus 142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~ 181 (382)
T PRK11128 142 VIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCC
Confidence 3444555555566674 4555554433332 3333445654
No 123
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=37.02 E-value=92 Score=22.70 Aligned_cols=32 Identities=3% Similarity=0.011 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHh---hh-hHHHHHHHHHHHHHHHHH
Q 040031 6 LVAQVFLNMLCH---LK-FGLFLFFAFFMLVMSFFI 37 (94)
Q Consensus 6 i~~~~~p~~~~~---~g-~~~f~i~~~~~~~~~~~~ 37 (94)
+.+.+.|.+... .+ ...|++++++.+++.+..
T Consensus 394 lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 394 VGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHH
Confidence 444555555542 12 255666666666665544
No 124
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=36.92 E-value=1.5e+02 Score=20.81 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 040031 6 LVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFI 37 (94)
Q Consensus 6 i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~ 37 (94)
+.+.+...+.+..|+ .+|.+.+.+++++.+++
T Consensus 354 ~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 354 YVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 344556666777884 56666666666654443
No 125
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=36.78 E-value=1.2e+02 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 7 VAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 7 ~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+.+.-++++..| .+.+++++++.+.+.++...+-|.+
T Consensus 186 ~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~ 224 (509)
T KOG2504|consen 186 FPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLS 224 (509)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3333444445667 4889999998888888777777743
No 126
>PRK15075 citrate-proton symporter; Provisional
Probab=36.01 E-value=1.5e+02 Score=21.16 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 6 LVAQVFLNMLCHLKF----GLFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 6 i~~~~~p~~~~~~g~----~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
+.+.+...+.+..|+ ..++++++++.+ ...+.+.+-++..+..
T Consensus 383 ~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 429 (434)
T PRK15075 383 FTPAISTWLIHVTGDKAAPGYWLSFAAVCGL---IATLVLYRRRGARLQA 429 (434)
T ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHHHhccccchhhhh
Confidence 344555555566662 234444443333 3344555555555443
No 127
>PRK03699 putative transporter; Provisional
Probab=35.86 E-value=1.3e+02 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSF 35 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~ 35 (94)
+.++.+.+..++.+..| ...+++.+++++++.+
T Consensus 341 g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 341 GTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 45566666667777667 4555555555555443
No 128
>PF15628 RRM_DME: RRM in Demeter
Probab=35.80 E-value=30 Score=20.46 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHhcCC
Q 040031 44 TKGIPIEEMGRVWKTHW 60 (94)
Q Consensus 44 tkg~~le~i~~~~~~~~ 60 (94)
+||.+.+||+..|.++.
T Consensus 63 frGls~~eIq~cF~~G~ 79 (103)
T PF15628_consen 63 FRGLSREEIQQCFWKGF 79 (103)
T ss_pred hcccCHHHHHHHHhcCc
Confidence 69999999999997654
No 129
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=35.38 E-value=59 Score=22.77 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLKFGL-FLFFAFFMLVMSF 35 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~~~-f~i~~~~~~~~~~ 35 (94)
++++.....+++.++.|+.. |.+-++..+++.+
T Consensus 84 G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~ 117 (372)
T PF00854_consen 84 GSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALI 117 (372)
T ss_dssp HHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred hhHhhcccchhhccccchhhhhhHHHHHHHHHHH
Confidence 45556667777788888544 4444444444333
No 130
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=34.68 E-value=23 Score=25.60 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhh-h-HHHHHHHHHHHHHHH
Q 040031 7 VAQVFLNMLCHLK-F-GLFLFFAFFMLVMSF 35 (94)
Q Consensus 7 ~~~~~p~~~~~~g-~-~~f~i~~~~~~~~~~ 35 (94)
.+.+...+.+..| + ..|.+.+++.+++.+
T Consensus 385 gp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 385 GPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred cccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 3333334444454 3 455555554444443
No 131
>PF13974 YebO: YebO-like protein
Probab=34.11 E-value=20 Score=20.29 Aligned_cols=27 Identities=15% Similarity=0.424 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031 28 FFMLVMSFFIYFFLPETKGIPIEEMGR 54 (94)
Q Consensus 28 ~~~~~~~~~~~~~~pEtkg~~le~i~~ 54 (94)
++.++..+.+|||+-.-+-|+-|+|+-
T Consensus 5 ~~~~lv~livWFFVnRaSvRANEQI~L 31 (80)
T PF13974_consen 5 VLVLLVGLIVWFFVNRASVRANEQIEL 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344455567788887777777777643
No 132
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=34.04 E-value=1.7e+02 Score=20.65 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~ 38 (94)
++++.+.+.+.++. | ...|.+++.+.+++.+.+.
T Consensus 328 ~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 328 ISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554442 5 5778888888777777654
No 133
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=33.44 E-value=1.7e+02 Score=21.26 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=14.8
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhhcccC
Q 040031 17 HLKF-GLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 17 ~~g~-~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
..|| ..|++.+.+.+ ..+++..++||+
T Consensus 188 ~~gWR~~f~i~~~~~l-~~~~~~~~~~es 215 (490)
T PRK10642 188 DWGWRIPFFIALPLGI-IGLYLRHALEET 215 (490)
T ss_pred CccHHHHHHHHHHHHH-HHHHHHHcCCCC
Confidence 4565 45555443333 344455678886
No 134
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=33.37 E-value=83 Score=18.10 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETKGI 47 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtkg~ 47 (94)
.+-++++++.++.++|.-++-|+....
T Consensus 21 I~d~Fwgi~~fI~lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 21 ITDFFWGIINFIVLFFQTLFSPDSSRS 47 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 345677888888888888888876444
No 135
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=33.35 E-value=62 Score=23.53 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhccc
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
++++...+-.++.+..+ ...|.+.+.+.++..+...+..+|
T Consensus 136 G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 136 GSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 44455555556666666 456777776666666666666666
No 136
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=32.19 E-value=89 Score=21.13 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHhhcccC
Q 040031 20 FGLFLFFAFFMLVMSF-FIYFFLPET 44 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~-~~~~~~pEt 44 (94)
++.|+||+.-.+-+.. ++.+++||+
T Consensus 28 YWlfIif~Fp~iG~VaYfvav~LPEl 53 (251)
T COG4700 28 YWLFIIFCFPVIGCVAYFVAVMLPEL 53 (251)
T ss_pred HHHHHHHHhcccchhhHHHHHhhhHh
Confidence 4566666543333333 466788997
No 137
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=31.26 E-value=1.8e+02 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFF 36 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~ 36 (94)
++.+.+.+...+.+..| ..+|.+.+++.++....
T Consensus 356 g~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 356 AMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34555566667777777 46666666665555443
No 138
>PRK11462 putative transporter; Provisional
Probab=31.08 E-value=2e+02 Score=20.90 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhhccc
Q 040031 4 TFLVAQVFLNMLCHLK--------FGLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g--------~~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
+++.+.+.+++....| .....+++.+.+++...++...+|
T Consensus 159 ~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 159 GMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 3444455445555443 123344444444444444444444
No 139
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=31.01 E-value=1.7e+02 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHH-HHHHHHHHHHHHHHHhhcccC
Q 040031 21 GLF-LFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 21 ~~f-~i~~~~~~~~~~~~~~~~pEt 44 (94)
..| ++.+.+.++..+..+.+.+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccC
Confidence 344 444555555555555566664
No 140
>PRK03612 spermidine synthase; Provisional
Probab=30.88 E-value=1.7e+02 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHH-hhh-hHHHHHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLC-HLK-FGLFLFFAFFMLVMSF 35 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~-~~g-~~~f~i~~~~~~~~~~ 35 (94)
+++++.+.+++.++- .+| ..+.++.++++++..+
T Consensus 156 lGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 156 LGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 456666666666654 566 4555666665555544
No 141
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=30.62 E-value=1.3e+02 Score=18.43 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=19.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 040031 15 LCHLKFGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 15 ~~~~g~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
+..+||++.+-++++.++++.+.....
T Consensus 80 lRALgWGTlyA~~GvG~l~~~iwK~~G 106 (124)
T PF07096_consen 80 LRALGWGTLYAVCGVGVLVFGIWKLSG 106 (124)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHHhc
Confidence 456788888888887777766655544
No 142
>COG3817 Predicted membrane protein [Function unknown]
Probab=30.21 E-value=1.2e+02 Score=21.25 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHh
Q 040031 20 FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWK 57 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~ 57 (94)
..+++-.+.-++++.+...+...+|.++.+.|-+++.+
T Consensus 125 natl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl~d 162 (313)
T COG3817 125 NATLMALGIAAIVATVLACVMTKQTPKAAVQEARRLMD 162 (313)
T ss_pred chhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 45677777778888888878788888888888666544
No 143
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=29.96 E-value=94 Score=21.61 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=14.6
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 18 LKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 18 ~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.|+ ..|++ .++..+..+...+++||+.
T Consensus 193 ~~w~~~f~~-~~~~~~~~~~~~~~l~~~~ 220 (481)
T TIGR00879 193 LGWRIPLGL-QLIPAGLLFLGLFFLPESP 220 (481)
T ss_pred ccHHHHHHH-HHHHHHHHHHHHhcCCCCh
Confidence 344 44555 3344444445567788874
No 144
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=29.95 E-value=2.1e+02 Score=20.92 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVM 33 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~ 33 (94)
+..+.+.+.+.+.+..|+ ..|.+.++..+++
T Consensus 153 G~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 153 GSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 455666667777777774 5555545443333
No 145
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=29.95 E-value=1.3e+02 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=13.4
Q ss_pred hhHHH-HHHHHHHHHHHHHHHhhcccC
Q 040031 19 KFGLF-LFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 19 g~~~f-~i~~~~~~~~~~~~~~~~pEt 44 (94)
+|... .+....+++.. ...+++||+
T Consensus 207 ~Wr~~~~~~~i~~~~~~-~~~~~~pes 232 (513)
T KOG0254|consen 207 GWRIPLGLALIPAVILA-LGMLFLPES 232 (513)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHhCCCC
Confidence 45433 33344444443 448888987
No 146
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=29.46 E-value=1.8e+02 Score=20.36 Aligned_cols=17 Identities=12% Similarity=-0.134 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040031 3 FTFLVAQVFLNMLCHLK 19 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g 19 (94)
+..+.+.+...+++..|
T Consensus 366 g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 366 GQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34455566666665444
No 147
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.39 E-value=1.5e+02 Score=25.54 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHHHHH
Q 040031 4 TFLVAQVFLNMLCHLK-FGLFLFFAFFMLV 32 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~ 32 (94)
+++...+.-.+...+| .++++++.++.++
T Consensus 144 GIIG~lLs~lL~~LfG~vGa~LILLlllLI 173 (1355)
T PRK10263 144 GVIGSLLSTTLQPLLHSSGGTIALLCVWAA 173 (1355)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444444444 3444443333333
No 148
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=29.29 E-value=2.3e+02 Score=21.22 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
..+.+-++..+++.+++++.+|.++.
T Consensus 451 ~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 451 PAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44555566667777788888998764
No 149
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=29.12 E-value=43 Score=19.12 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.2
Q ss_pred HHHHHhhccc
Q 040031 34 SFFIYFFLPE 43 (94)
Q Consensus 34 ~~~~~~~~pE 43 (94)
++.+.+|+|+
T Consensus 13 vI~lllFGp~ 22 (84)
T PRK00191 13 LLIIVLFGAK 22 (84)
T ss_pred HHHHHHhcch
Confidence 3444556655
No 150
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=29.05 E-value=1.1e+02 Score=22.12 Aligned_cols=34 Identities=6% Similarity=-0.117 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHH------------hhh-hHHHHHHHHHHHHHHHHHH
Q 040031 5 FLVAQVFLNMLC------------HLK-FGLFLFFAFFMLVMSFFIY 38 (94)
Q Consensus 5 ~i~~~~~p~~~~------------~~g-~~~f~i~~~~~~~~~~~~~ 38 (94)
++.+.++..+.+ ..| ...|.+++++.+++.+...
T Consensus 400 ~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 400 SFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 455566666667 334 3566666666666655433
No 151
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=28.85 E-value=1.5e+02 Score=18.55 Aligned_cols=27 Identities=4% Similarity=-0.066 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040031 5 FLVAQVFLNMLCHLKFGLFLFFAFFML 31 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~~~f~i~~~~~~ 31 (94)
.+..++.|.+.+.+|.+.-++.+.++.
T Consensus 51 ~~s~l~~P~iv~~lg~K~sm~lg~~~y 77 (156)
T PF05978_consen 51 AISCLFAPSIVNKLGPKWSMILGSLGY 77 (156)
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 445566788887777544444444333
No 152
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=28.74 E-value=1e+02 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHhhc
Q 040031 3 FTFLVAQVFLNMLCHLK--FGLFLFFAFFMLVMSFFIYFFL 41 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g--~~~f~i~~~~~~~~~~~~~~~~ 41 (94)
++|..++.+....+..| ...|.++..+.+++.+..+...
T Consensus 361 GGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 361 GGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred cccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888877 3677788888777777655443
No 153
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=28.65 E-value=67 Score=18.27 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 040031 21 GLFLFFAFFMLVMSF 35 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~ 35 (94)
..|.+|++.|+..++
T Consensus 33 ~ml~~fa~l~ly~~~ 47 (85)
T PF13150_consen 33 VMLVLFAALCLYMTV 47 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556655555444
No 154
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=28.63 E-value=2e+02 Score=19.92 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040031 5 FLVAQVFLNMLCHLKFGLFLFFAFFMLVMSF 35 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~ 35 (94)
.+.+.+...+.+..|...|++.+++.+.+++
T Consensus 343 ~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 343 AIMTVLSGFLYQHLGAGVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3445555566666665566666655554433
No 155
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=28.62 E-value=2.3e+02 Score=21.66 Aligned_cols=35 Identities=9% Similarity=-0.019 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFF 36 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~ 36 (94)
+++++.+.+.+++.++.|+ ..|.+.++-.+.+++.
T Consensus 166 iGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 4677888888988888885 5555555555555443
No 156
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=28.24 E-value=1e+02 Score=23.10 Aligned_cols=11 Identities=55% Similarity=0.908 Sum_probs=8.1
Q ss_pred HHHHHhhcccC
Q 040031 34 SFFIYFFLPET 44 (94)
Q Consensus 34 ~~~~~~~~pEt 44 (94)
..+...++|||
T Consensus 206 v~~~~~~lpET 216 (451)
T KOG2615|consen 206 VTFFPWFLPET 216 (451)
T ss_pred HHHHHHhCCcc
Confidence 34566789999
No 157
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=28.21 E-value=2.1e+02 Score=19.88 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAFFMLVMS 34 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~ 34 (94)
+..+.+.+...+.+..|+ ..|.+.+++.+++.
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 345555666666676774 55555555544443
No 158
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.01 E-value=87 Score=18.13 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.9
Q ss_pred hHHHHHHHHH
Q 040031 20 FGLFLFFAFF 29 (94)
Q Consensus 20 ~~~f~i~~~~ 29 (94)
+++|++++++
T Consensus 3 SK~~llL~l~ 12 (95)
T PF07172_consen 3 SKAFLLLGLL 12 (95)
T ss_pred hhHHHHHHHH
Confidence 4566666654
No 159
>PRK15075 citrate-proton symporter; Provisional
Probab=26.78 E-value=1.5e+02 Score=21.07 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=12.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 16 CHLKFGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 16 ~~~g~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+..||...++++++.++...+.....||+
T Consensus 186 ~~~gWr~~f~~~~~~~~~~~~~~~~~~e~ 214 (434)
T PRK15075 186 AEWGWRIPFLIGCLIVPFIFLIRRSLEET 214 (434)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45665333333333333333334445664
No 160
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=26.49 E-value=58 Score=17.81 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=11.3
Q ss_pred CCCCCHHHHHHHHhcC
Q 040031 44 TKGIPIEEMGRVWKTH 59 (94)
Q Consensus 44 tkg~~le~i~~~~~~~ 59 (94)
.+|+|.++|...|.-.
T Consensus 43 i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 43 IKGKSPEEIRKYFGIE 58 (78)
T ss_dssp HTTS-HHHHHHHHT--
T ss_pred hcCCCHHHHHHHcCCC
Confidence 3699999999999743
No 161
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=26.40 E-value=2.3e+02 Score=19.81 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHHHHHHHh-hhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 8 AQVFLNMLCH-LKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 8 ~~~~p~~~~~-~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
+.+...+.+. .|| ..|++.+.+.++..+ ..++.||++
T Consensus 147 ~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~ 185 (402)
T PRK11902 147 GGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPE 185 (402)
T ss_pred hHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence 3334444443 364 566666666555433 345677764
No 162
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=26.16 E-value=2.3e+02 Score=19.70 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=16.3
Q ss_pred hh-hHHHHHHHHHHHHHHHHHHhhcccC
Q 040031 18 LK-FGLFLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 18 ~g-~~~f~i~~~~~~~~~~~~~~~~pEt 44 (94)
.+ ...|++.+.+.++..+..+...||+
T Consensus 159 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 159 IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35 4567677777666665555555554
No 163
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=26.12 E-value=2e+02 Score=21.51 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHH-hhh-hHHHHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLC-HLK-FGLFLFFAFFMLVMS 34 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~-~~g-~~~f~i~~~~~~~~~ 34 (94)
+++......+|+++- .+| ..+-++.+.|+++++
T Consensus 150 LGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aA 184 (508)
T COG4262 150 LGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAA 184 (508)
T ss_pred hhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence 455666677777653 345 333344444554444
No 164
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=26.01 E-value=77 Score=18.14 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 040031 24 LFFAFFMLVMSF 35 (94)
Q Consensus 24 ~i~~~~~~~~~~ 35 (94)
.||=.+|+++++
T Consensus 30 AIFQliCilAiI 41 (85)
T PF06783_consen 30 AIFQLICILAII 41 (85)
T ss_pred HHHHHHHHHhee
Confidence 455555555444
No 165
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=25.84 E-value=1.6e+02 Score=17.80 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhHHHH
Q 040031 8 AQVFLNMLCHLKFGLFL 24 (94)
Q Consensus 8 ~~~~p~~~~~~g~~~f~ 24 (94)
-+..|++++..|+..|+
T Consensus 54 ~Y~iPFllNqcgSaly~ 70 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYY 70 (125)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 36677777777754443
No 166
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=25.74 E-value=2.6e+02 Score=20.08 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
..|++.++++++..+..++++||+.
T Consensus 188 ~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 188 AALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCH
Confidence 5677777777776677777888764
No 167
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=25.44 E-value=2.9e+02 Score=20.61 Aligned_cols=41 Identities=2% Similarity=0.034 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhh---h-HHHHHHHHHHHHHHHHHHhhccc
Q 040031 3 FTFLVAQVFLNMLCHLK---F-GLFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g---~-~~f~i~~~~~~~~~~~~~~~~pE 43 (94)
+..+..++.|.+....| + .+..++....++..+..++++-+
T Consensus 151 G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 151 GVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45677888999988887 4 45667777767766766766543
No 168
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.26 E-value=73 Score=20.80 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.1
Q ss_pred cccCCCCCHH
Q 040031 41 LPETKGIPIE 50 (94)
Q Consensus 41 ~pEtkg~~le 50 (94)
+|..-+..+.
T Consensus 170 lp~~inp~l~ 179 (206)
T PF06570_consen 170 LPPVINPVLP 179 (206)
T ss_pred ccccCCcCCC
Confidence 5655554443
No 169
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.15 E-value=1.2e+02 Score=16.24 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcccCCCCCHHHHHHH
Q 040031 30 MLVMSFFIYFFLPETKGIPIEEMGRV 55 (94)
Q Consensus 30 ~~~~~~~~~~~~pEtkg~~le~i~~~ 55 (94)
.+++.+..+++-|+.-....+++...
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~ 34 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDK 34 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 34566777888898655555555443
No 170
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=25.09 E-value=2.9e+02 Score=20.44 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHH
Q 040031 3 FTFLVAQVFLNMLCHLKF-GLFLFFAF 28 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g~-~~f~i~~~ 28 (94)
+.++.+.+.+++.+..|+ ..|.+.++
T Consensus 162 G~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 162 GSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 455666777777777784 55655553
No 171
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=24.68 E-value=1.9e+02 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhc
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKT 58 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~ 58 (94)
.+..-++.-++++.+..+....++-..+++|-+|+.+.
T Consensus 122 ~tlv~lgig~i~Ali~a~~itk~~~~~~~~e~~Rll~~ 159 (308)
T PF06166_consen 122 GTLVGLGIGAIVALIVALIITKPKPKQPLKESRRLLDQ 159 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHH
Confidence 45555666677777777777777777778887776653
No 172
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.18 E-value=91 Score=21.22 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 040031 24 LFFAFFMLV 32 (94)
Q Consensus 24 ~i~~~~~~~ 32 (94)
+.|++..++
T Consensus 204 i~Y~vPY~~ 212 (230)
T PF03904_consen 204 IAYLVPYIF 212 (230)
T ss_pred HHHhhHHHH
Confidence 344444444
No 173
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=23.92 E-value=2.8e+02 Score=20.86 Aligned_cols=31 Identities=10% Similarity=-0.088 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLCHLKF-GLFLFFAFFMLV 32 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g~-~~f~i~~~~~~~ 32 (94)
+++++.+.+.+.+.+..|+ ..|.+.+...++
T Consensus 149 lG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 149 VGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 3566777777777777774 555554433333
No 174
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.47 E-value=1.8e+02 Score=17.58 Aligned_cols=20 Identities=20% Similarity=0.670 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 040031 21 GLFLFFAFFMLVMSFFIYFF 40 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~ 40 (94)
..|++.+.++++....+|++
T Consensus 40 ~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 40 VIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655555554
No 175
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=23.38 E-value=1.4e+02 Score=20.74 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhcc-cCCCCCHHHHHHHHh
Q 040031 26 FAFFMLVMSFFIYFFLP-ETKGIPIEEMGRVWK 57 (94)
Q Consensus 26 ~~~~~~~~~~~~~~~~p-Etkg~~le~i~~~~~ 57 (94)
+++.+..+.=-+.+.+| |-||.+..++.-.|.
T Consensus 213 l~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg 245 (267)
T PF07672_consen 213 LAGFFLWGIQGVILNLPHEYKGYNPKKIGIQFG 245 (267)
T ss_pred HHHHHHHhhhHHHhcChhhhcCCCcceehhHHH
Confidence 34444444444566676 677777777766554
No 176
>PLN02777 photosystem I P subunit (PSI-P)
Probab=23.28 E-value=2.2e+02 Score=18.44 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 040031 21 GLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVW 56 (94)
Q Consensus 21 ~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~ 56 (94)
.+|=+.++....-+++-|+...|.|..=+++++...
T Consensus 125 ~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk 160 (167)
T PLN02777 125 GVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTY 160 (167)
T ss_pred chHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHH
Confidence 444444444444444555555555544445554433
No 177
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=23.00 E-value=2.2e+02 Score=22.69 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040031 1 MLFTFLVAQVFLNMLCHLKFGLFLFFAFFMLV 32 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g~~~f~i~~~~~~~ 32 (94)
|+...++.+-+.-++..+..-.|+++.++.++
T Consensus 652 w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~ 683 (742)
T PF05879_consen 652 WMYLLLLVLGWNEFMAVLRNPLYFTLLLILGG 683 (742)
T ss_pred HHHHHHHHHhHHHHHHHHHChHHHHHHHHHHH
Confidence 66777777777777777764344444433333
No 178
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=22.97 E-value=1.3e+02 Score=15.60 Aligned_cols=14 Identities=7% Similarity=0.187 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHH
Q 040031 20 FGLFLFFAFFMLVM 33 (94)
Q Consensus 20 ~~~f~i~~~~~~~~ 33 (94)
+++|++.+++.+-+
T Consensus 3 wWvY~vi~gI~~S~ 16 (52)
T PF14147_consen 3 WWVYFVIAGIIFSG 16 (52)
T ss_pred chHHHHHHHHHHHH
Confidence 56777776664443
No 179
>PF14007 YtpI: YtpI-like protein
Probab=22.57 E-value=1.7e+02 Score=16.84 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLC 16 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~ 16 (94)
++.++..+....++-
T Consensus 39 lG~fl~~fgiNQ~~~ 53 (89)
T PF14007_consen 39 LGIFLILFGINQMFL 53 (89)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 180
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=22.49 E-value=2.4e+02 Score=18.60 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhHHHHH
Q 040031 1 MLFTFLVAQVFLNMLCHLKFGLFLF 25 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~~g~~~f~i 25 (94)
|=.+...++..|++.-.....+|.+
T Consensus 66 wkTniltslLVPyi~lslPs~if~~ 90 (187)
T PF05562_consen 66 WKTNILTSLLVPYIFLSLPSVIFNW 90 (187)
T ss_pred chhhhhHHHHHHHHHHhCcHHHHHH
Confidence 4456677777787775554444433
No 181
>PRK09669 putative symporter YagG; Provisional
Probab=22.37 E-value=3e+02 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 040031 22 LFLFFAFFMLVMSFFIYFFLPE 43 (94)
Q Consensus 22 ~f~i~~~~~~~~~~~~~~~~pE 43 (94)
.+.++++++++..+..++..+|
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEE
Confidence 4555555555555445554444
No 182
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=21.92 E-value=98 Score=20.67 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHH
Q 040031 1 MLFTFLVAQVFL 12 (94)
Q Consensus 1 W~~~~i~~~~~p 12 (94)
|+.+|++-+++|
T Consensus 171 Wi~gF~~Ff~~P 182 (212)
T PF09878_consen 171 WIAGFIGFFLFP 182 (212)
T ss_pred HHHHHHHHHHhH
Confidence 444444444444
No 183
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=21.81 E-value=1.5e+02 Score=16.59 Aligned_cols=22 Identities=23% Similarity=0.765 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q 040031 23 FLFFAFFMLVMSFFIYFFLPET 44 (94)
Q Consensus 23 f~i~~~~~~~~~~~~~~~~pEt 44 (94)
+++-++++++..++.++|+-=|
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ls 74 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNLS 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555666666666665433
No 184
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.79 E-value=1.6e+02 Score=23.60 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=20.0
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 17 HLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 17 ~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
++| |+.-++.++...+...+.++++|.+.-++.
T Consensus 317 WIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 317 WIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 467 666555555555555566677777655543
No 185
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=2.1e+02 Score=17.61 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 040031 20 FGLFLFFAFFMLVMSFFIYF 39 (94)
Q Consensus 20 ~~~f~i~~~~~~~~~~~~~~ 39 (94)
.+.|++.+..+.+....+|.
T Consensus 64 a~vftivaif~~~ya~~lY~ 83 (126)
T COG5264 64 AYVFTIVAIFCGFYALMLYL 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677777666666555554
No 186
>COG4811 Predicted membrane protein [Function unknown]
Probab=20.88 E-value=1.3e+02 Score=18.87 Aligned_cols=28 Identities=21% Similarity=0.550 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 040031 25 FFAFFMLVMSFFIYFFLPETKGIPIEEM 52 (94)
Q Consensus 25 i~~~~~~~~~~~~~~~~pEtkg~~le~i 52 (94)
++-.+.++.+++=-+++|..||+++-.+
T Consensus 10 l~i~~~LlYa~Ydqfimp~~kGkTlL~V 37 (152)
T COG4811 10 LFIALLLLYAIYDQFIMPRRKGKTLLSV 37 (152)
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEE
Confidence 3333444555566688999999997664
No 187
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=20.86 E-value=1e+02 Score=15.30 Aligned_cols=17 Identities=24% Similarity=0.598 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhcccC
Q 040031 28 FFMLVMSFFIYFFLPET 44 (94)
Q Consensus 28 ~~~~~~~~~~~~~~pEt 44 (94)
.+.++..+..|-.+||+
T Consensus 5 ~~~~i~~~~~y~~LP~~ 21 (51)
T PF07853_consen 5 VLPLIITLIFYPQLPDQ 21 (51)
T ss_pred HHHHHHHHHHHHHCChh
Confidence 34445556677778874
No 188
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=20.42 E-value=2e+02 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 040031 8 AQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGR 54 (94)
Q Consensus 8 ~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~ 54 (94)
..++..++-.+++...++.-+...+..+..+.+.|-++.++.+.+++
T Consensus 281 ~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~ 327 (709)
T COG2274 281 ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEE 327 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333444445556667777777666554
No 189
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.36 E-value=3.3e+02 Score=19.45 Aligned_cols=28 Identities=14% Similarity=-0.005 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040031 6 LVAQVFLNMLCHLKFGLFLFFAFFMLVM 33 (94)
Q Consensus 6 i~~~~~p~~~~~~g~~~f~i~~~~~~~~ 33 (94)
+..+..|.+...+|+.+-.+|.++.++.
T Consensus 104 ~~~f~~Pv~lpiLG~~~GliYv~i~~~v 131 (311)
T COG3366 104 AFTFYAPVALPILGLELGLIYVGIRVLV 131 (311)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456677777777755444444443333
Done!