Query 040031
Match_columns 94
No_of_seqs 162 out of 1076
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.3 9.2E-13 3.1E-17 92.2 5.5 60 1-60 416-482 (491)
2 2cfq_A Lactose permease; trans 93.6 0.093 3.2E-06 36.0 4.3 48 2-49 360-408 (417)
3 2xut_A Proton/peptide symporte 86.7 0.46 1.6E-05 33.1 2.9 50 2-51 452-513 (524)
4 4aps_A DI-OR tripeptide H+ sym 83.0 0.51 1.7E-05 32.5 1.7 45 4-48 435-479 (491)
5 1pw4_A Glycerol-3-phosphate tr 79.7 2.4 8.4E-05 28.5 4.1 41 6-46 170-212 (451)
6 1pw4_A Glycerol-3-phosphate tr 73.3 0.77 2.6E-05 31.0 0.2 38 3-40 395-433 (451)
7 2gfp_A EMRD, multidrug resista 73.3 1.9 6.7E-05 28.4 2.2 33 14-46 147-180 (375)
8 3o7q_A L-fucose-proton symport 65.7 14 0.00046 24.7 5.2 30 2-31 392-423 (438)
9 2dw3_A Intrinsic membrane prot 64.6 15 0.0005 19.8 6.1 37 10-46 22-59 (77)
10 4aps_A DI-OR tripeptide H+ sym 55.9 36 0.0012 23.1 6.0 36 5-40 160-196 (491)
11 3ff5_A PEX14P, peroxisomal bio 43.0 10 0.00035 19.1 1.2 15 43-57 38-52 (54)
12 2xut_A Proton/peptide symporte 42.6 41 0.0014 23.1 4.6 32 11-42 168-200 (524)
13 2nrg_A Intrinsic membrane prot 42.3 41 0.0014 18.3 5.7 33 13-45 26-59 (82)
14 2w84_A Peroxisomal membrane pr 38.4 13 0.00045 19.7 1.2 16 43-58 43-58 (70)
15 1fs1_B SKP1, cyclin A/CDK2-ass 31.4 23 0.00079 20.8 1.6 16 44-59 121-136 (141)
16 3mmy_B Nuclear pore complex pr 28.9 42 0.0014 16.9 2.1 17 38-54 32-48 (56)
17 3v7d_A Suppressor of kinetocho 24.9 41 0.0014 20.5 1.9 17 44-60 133-149 (169)
18 2p1m_A SKP1-like protein 1A; F 21.0 49 0.0017 19.8 1.7 17 43-59 124-140 (160)
19 1nkz_B Light-harvesting protei 20.5 82 0.0028 14.8 3.1 21 22-42 18-38 (41)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.35 E-value=9.2e-13 Score=92.17 Aligned_cols=60 Identities=23% Similarity=0.456 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHh------hh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcCC
Q 040031 1 MLFTFLVAQVFLNMLCH------LK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEEMGRVWKTHW 60 (94)
Q Consensus 1 W~~~~i~~~~~p~~~~~------~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~i~~~~~~~~ 60 (94)
|++++++++++|.+.+. .+ ..+|++++++++++.+++++++||||||+|||||++|+++.
T Consensus 416 ~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 416 WLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 57788899999988653 23 46789999999999999999999999999999999998654
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=93.55 E-value=0.093 Score=35.95 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 040031 2 LFTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFFLPETKGIPI 49 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~~pEtkg~~l 49 (94)
+++++.+.+.+.+.+..| ...|.+.+++++++.+..++..||++..++
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 456677777787787777 567888888888888777788888766553
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=86.69 E-value=0.46 Score=33.09 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHh----------hh--hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 040031 2 LFTFLVAQVFLNMLCH----------LK--FGLFLFFAFFMLVMSFFIYFFLPETKGIPIEE 51 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~----------~g--~~~f~i~~~~~~~~~~~~~~~~pEtkg~~le~ 51 (94)
+++++.+.+.+.+.+. .+ ...|++++++++++.+..+++.+++++++.++
T Consensus 452 ~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 452 VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 3455666666655542 11 12377888888888888888888887766544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=83.04 E-value=0.51 Score=32.52 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 040031 4 TFLVAQVFLNMLCHLKFGLFLFFAFFMLVMSFFIYFFLPETKGIP 48 (94)
Q Consensus 4 ~~i~~~~~p~~~~~~g~~~f~i~~~~~~~~~~~~~~~~pEtkg~~ 48 (94)
+++.+.+.+.+.+......|.+++++++++.+..+++.++++++.
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333222256788888888888888888888876553
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=79.68 E-value=2.4 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.386 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhh-h-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 6 LVAQVFLNMLCHLK-F-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 6 i~~~~~p~~~~~~g-~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
+.+.+...+.+..| + ..|++.+.++++..+..++++||+..
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 34444455556666 5 56777777777777778888888654
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=73.31 E-value=0.77 Score=31.01 Aligned_cols=38 Identities=5% Similarity=-0.022 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhh
Q 040031 3 FTFLVAQVFLNMLCHLK-FGLFLFFAFFMLVMSFFIYFF 40 (94)
Q Consensus 3 ~~~i~~~~~p~~~~~~g-~~~f~i~~~~~~~~~~~~~~~ 40 (94)
++.+.+.+...+.+..| ...|.+.+++++++.+..++.
T Consensus 395 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777888777 467777777777766655443
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=73.27 E-value=1.9 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 14 MLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 14 ~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
+.+..|+ ..|.+.+.+.++..+..++++||++.
T Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 3334453 56666777766666666778888754
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=65.71 E-value=14 Score=24.70 Aligned_cols=30 Identities=13% Similarity=-0.124 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhh-h-HHHHHHHHHHH
Q 040031 2 LFTFLVAQVFLNMLCHLK-F-GLFLFFAFFML 31 (94)
Q Consensus 2 ~~~~i~~~~~p~~~~~~g-~-~~f~i~~~~~~ 31 (94)
+++.+.+.+...+.+..| . ..|.+.+++.+
T Consensus 392 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 567778888888888887 4 44554443333
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=64.57 E-value=15 Score=19.84 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCCC
Q 040031 10 VFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETKG 46 (94)
Q Consensus 10 ~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtkg 46 (94)
+.-.|+...|+ .++++-..+.++++.++-..+||-+.
T Consensus 22 i~~qMlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 22 VAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 33445555564 34444444444555566677887543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=55.95 E-value=36 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHhh
Q 040031 5 FLVAQVFLNMLCHLKF-GLFLFFAFFMLVMSFFIYFF 40 (94)
Q Consensus 5 ~i~~~~~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~ 40 (94)
.+.+.+...+.+..|+ ..|.+.+.+.+++.+..++.
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566674 56666665555555544443
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=42.98 E-value=10 Score=19.06 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.5
Q ss_pred cCCCCCHHHHHHHHh
Q 040031 43 ETKGIPIEEMGRVWK 57 (94)
Q Consensus 43 Etkg~~le~i~~~~~ 57 (94)
+.||.+-+||+..+.
T Consensus 38 ~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 578999999988775
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=42.61 E-value=41 Score=23.07 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhcc
Q 040031 11 FLNMLCHLKF-GLFLFFAFFMLVMSFFIYFFLP 42 (94)
Q Consensus 11 ~p~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~p 42 (94)
...+.+..|+ ..|.+.+++.+++.+..++..|
T Consensus 168 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 168 MPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp STHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455563 5566666665555554443333
No 13
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=42.32 E-value=41 Score=18.27 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHhhhh-HHHHHHHHHHHHHHHHHHhhcccCC
Q 040031 13 NMLCHLKF-GLFLFFAFFMLVMSFFIYFFLPETK 45 (94)
Q Consensus 13 ~~~~~~g~-~~f~i~~~~~~~~~~~~~~~~pEtk 45 (94)
.|+...|+ .++++-..+.++++.++-..+||-+
T Consensus 26 qMlKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~S 59 (82)
T 2nrg_A 26 QMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQE 59 (82)
T ss_dssp HHTHHHHTHHHHHHHHHHHHHHHHHHHHSSTTTT
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhc
Confidence 34444454 3444444444445556667788753
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=38.36 E-value=13 Score=19.72 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=14.0
Q ss_pred cCCCCCHHHHHHHHhc
Q 040031 43 ETKGIPIEEMGRVWKT 58 (94)
Q Consensus 43 Etkg~~le~i~~~~~~ 58 (94)
+.||.+-+||+..++.
T Consensus 43 ~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 5799999999999875
No 15
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=31.43 E-value=23 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.6
Q ss_pred CCCCCHHHHHHHHhcC
Q 040031 44 TKGIPIEEMGRVWKTH 59 (94)
Q Consensus 44 tkg~~le~i~~~~~~~ 59 (94)
-+|++.|||++.|.-.
T Consensus 121 ikgkt~eeiR~~f~I~ 136 (141)
T 1fs1_B 121 IKGKTPEEIRKTFNIK 136 (141)
T ss_dssp HTTCCHHHHHHHTC--
T ss_pred HcCCCHHHHHHHcCCC
Confidence 4899999999998643
No 16
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=28.88 E-value=42 Score=16.94 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.9
Q ss_pred HhhcccCCCCCHHHHHH
Q 040031 38 YFFLPETKGIPIEEMGR 54 (94)
Q Consensus 38 ~~~~pEtkg~~le~i~~ 54 (94)
+.++|+=+++|+||++-
T Consensus 32 Is~M~~Y~~~S~EELR~ 48 (56)
T 3mmy_B 32 ITAMKEYESKSLEELRL 48 (56)
T ss_dssp GGGSTTTTTSCHHHHHH
T ss_pred EecchhhhcCCHHHHHH
Confidence 45789999999999753
No 17
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=24.87 E-value=41 Score=20.45 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHHHhcCC
Q 040031 44 TKGIPIEEMGRVWKTHW 60 (94)
Q Consensus 44 tkg~~le~i~~~~~~~~ 60 (94)
.+|++.|||++.|.-.+
T Consensus 133 ikgktpeeiR~~f~I~n 149 (169)
T 3v7d_A 133 IRGRSPEEIRRTFNIVN 149 (169)
T ss_dssp HTTCCHHHHHHHHTCCC
T ss_pred HcCCCHHHHHHHcCCCC
Confidence 47999999999997543
No 18
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.96 E-value=49 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=14.1
Q ss_pred cCCCCCHHHHHHHHhcC
Q 040031 43 ETKGIPIEEMGRVWKTH 59 (94)
Q Consensus 43 Etkg~~le~i~~~~~~~ 59 (94)
-.+|++.|||+..|.-.
T Consensus 124 ~ikgkt~eeir~~f~I~ 140 (160)
T 2p1m_A 124 MIKGKTPEEIRTTFNIK 140 (160)
T ss_dssp TTTTCCHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHcCCC
Confidence 35899999999998753
No 19
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=20.49 E-value=82 Score=14.75 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 040031 22 LFLFFAFFMLVMSFFIYFFLP 42 (94)
Q Consensus 22 ~f~i~~~~~~~~~~~~~~~~p 42 (94)
.+..|.++.+++=+.+|.+-|
T Consensus 18 ~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 18 GTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 455666666666666666544
Done!