BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040032
         (144 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
 pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
           With Fad And Sam
          Length = 689

 Score = 27.7 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 50  IASILVAGAIGVYLPVLGKTIPALSPERKIFFLIKAFAAG 89
           +A IL A   G  LP+  KT+ AL+P R   F I+    G
Sbjct: 638 VAEILAAQXFGEPLPLDAKTLAALNPNR---FWIRKLLKG 674


>pdb|1H1N|A Chain A, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
 pdb|1H1N|B Chain B, Atomic Resolution Structure Of The Major Endoglucanase
           From Thermoascus Aurantiacus
          Length = 305

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 30  CDPEDDDRDKTQALKYKLAAIASILVAGAIGVYLPVLGKT 69
            D E  D D+T  L    AAI  I  AGA   Y+ V G +
Sbjct: 130 TDNEYHDMDQTLVLNLNQAAIDGIRSAGATSQYIFVEGNS 169


>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
           Protease
          Length = 430

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 94  TGFVHVLPDAFENLTSPCLDEHPWADFPFTGF 125
           TG + V+PD F   ++P L++ P    P +G+
Sbjct: 40  TGNIWVIPDRFSRNSNPNLNKPPRVTSPKSGY 71


>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
           Botulinum Neurotoxin Type C Light Chain
          Length = 450

 Score = 26.6 bits (57), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 94  TGFVHVLPDAFENLTSPCLDEHPWADFPFTGF 125
           TG + V+PD F   ++P L++ P    P +G+
Sbjct: 60  TGNIWVIPDRFSRNSNPNLNKPPRVTSPKSGY 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,529,180
Number of Sequences: 62578
Number of extensions: 126652
Number of successful extensions: 262
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)