Query 040032
Match_columns 144
No_of_seqs 112 out of 837
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:32:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 36.6 47 0.0016 28.0 5.0 52 45-96 413-467 (473)
2 2kwz_A Protease NS2-3; NS2 dom 9.7 90 0.0031 18.1 0.7 16 89-106 4-19 (40)
3 2ks1_B Epidermal growth factor 7.3 3.9E+02 0.014 15.3 2.8 17 53-69 21-37 (44)
4 2oar_A Large-conductance mecha 5.8 2.3E+02 0.008 21.2 1.6 16 85-100 39-54 (174)
5 3arc_M Photosystem II reaction 5.3 3.8E+02 0.013 15.0 1.8 14 91-104 8-21 (36)
6 3arc_H Photosystem II reaction 5.2 5.7E+02 0.02 16.1 2.9 23 116-138 23-46 (65)
7 1z65_A PRPLP, prion-like prote 4.6 4.7E+02 0.016 14.0 1.8 15 8-22 8-22 (30)
8 3hzq_A Large-conductance mecha 4.4 5.8E+02 0.02 17.7 2.8 22 86-107 37-58 (114)
9 2kzq_A Envelope glycoprotein E 4.4 98 0.0033 17.5 -1.1 14 92-105 6-19 (36)
10 1rh5_B Preprotein translocase 4.1 6.9E+02 0.024 15.8 2.7 27 38-65 31-57 (74)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=36.60 E-value=47 Score=28.02 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCC---CCChhHHHHHHHhhhhHHHHHHh
Q 040032 45 YKLAAIASILVAGAIGVYLPVLGKTIPAL---SPERKIFFLIKAFAAGVILSTGF 96 (144)
Q Consensus 45 lKi~~i~vIl~~sllg~~lPl~~~~~~~~---~~~~~~l~l~~~FagGVfLataf 96 (144)
.-+..++.+++++++|+++|++++|+..- -..+.+-++.-.+|--++++.|-
T Consensus 413 v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~ 467 (473)
T 2zy9_A 413 VGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVAR 467 (473)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 34455566677788888888888776321 01123344444555555555543
No 2
>2kwz_A Protease NS2-3; NS2 domain, viral protein, membrane prote; NMR {Hepatitis c virus}
Probab=9.68 E-value=90 Score=18.07 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=10.9
Q ss_pred hHHHHHHhhhhhHHHHHh
Q 040032 89 GVILSTGFVHVLPDAFEN 106 (144)
Q Consensus 89 GVfLataflHLLPea~E~ 106 (144)
||++.++++| |+-.=.
T Consensus 4 aiIll~~~~h--P~L~Fd 19 (40)
T 2kwz_A 4 AVILLTCAIH--PELIFT 19 (40)
T ss_dssp SHHHHHHHSS--HHHHHH
T ss_pred eeeeHHHHhC--chHHHH
Confidence 6888888887 444433
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.27 E-value=3.9e+02 Score=15.34 Aligned_cols=17 Identities=6% Similarity=0.168 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhhhhhcc
Q 040032 53 ILVAGAIGVYLPVLGKT 69 (144)
Q Consensus 53 Il~~sllg~~lPl~~~~ 69 (144)
+++...++...=++.+|
T Consensus 21 v~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44444444444445554
No 4
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=5.83 E-value=2.3e+02 Score=21.23 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.2
Q ss_pred HhhhhHHHHHHhhhhh
Q 040032 85 AFAAGVILSTGFVHVL 100 (144)
Q Consensus 85 ~FagGVfLataflHLL 100 (144)
=+|-||++|+||--+.
T Consensus 39 DLAVgVIIGaAF~~IV 54 (174)
T 2oar_A 39 DLAVAVVIGTAFTALV 54 (174)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999998764
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.30 E-value=3.8e+02 Score=15.02 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=7.8
Q ss_pred HHHHHhhhhhHHHH
Q 040032 91 ILSTGFVHVLPDAF 104 (144)
Q Consensus 91 fLataflHLLPea~ 104 (144)
|+|+++.-+.|.++
T Consensus 8 fiAt~Lfi~iPt~F 21 (36)
T 3arc_M 8 LIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 6
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=5.21 E-value=5.7e+02 Score=16.08 Aligned_cols=23 Identities=13% Similarity=0.455 Sum_probs=14.0
Q ss_pred CCCCCcHH-HHHHHHHHHHHHHHH
Q 040032 116 PWADFPFT-GFAAMVAAIGTLMID 138 (144)
Q Consensus 116 ~~~~yP~a-~li~~~Gf~l~~llE 138 (144)
.|+..|+. -+..+...|+...+|
T Consensus 23 GWGTtplMgv~m~Lf~vFl~iiLe 46 (65)
T 3arc_H 23 GWGTTPLMAVFMGLFLVFLLIILE 46 (65)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccChhHHHHHHHHHHHHHHHHHH
Confidence 67888844 444455555555555
No 7
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=4.59 E-value=4.7e+02 Score=14.00 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcc
Q 040032 8 LCIIFFCILLVLLPN 22 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (144)
-+++.+|.++|+=-+
T Consensus 8 ~wlai~c~LLfs~Ls 22 (30)
T 1z65_A 8 WWVAILCMLLASHLS 22 (30)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhHH
Confidence 366777888776433
No 8
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=4.44 E-value=5.8e+02 Score=17.70 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=16.4
Q ss_pred hhhhHHHHHHhhhhhHHHHHhc
Q 040032 86 FAAGVILSTGFVHVLPDAFENL 107 (144)
Q Consensus 86 FagGVfLataflHLLPea~E~~ 107 (144)
+|-||++|+||--+...-.++.
T Consensus 37 LAVgVIIG~AF~~IV~SlV~dI 58 (114)
T 3hzq_A 37 LAIAVVMGAAFNKIICSLVENI 58 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999987765555543
No 9
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=4.44 E-value=98 Score=17.50 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=9.1
Q ss_pred HHHHhhhhhHHHHH
Q 040032 92 LSTGFVHVLPDAFE 105 (144)
Q Consensus 92 LataflHLLPea~E 105 (144)
|+|+++|+-....+
T Consensus 6 lstGliHlhqnivd 19 (36)
T 2kzq_A 6 LSTGLLHLHQNIVD 19 (36)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred hhccceehhhhheh
Confidence 45778888655443
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.06 E-value=6.9e+02 Score=15.84 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=15.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhh
Q 040032 38 DKTQALKYKLAAIASILVAGAIGVYLPV 65 (144)
Q Consensus 38 d~~~~l~lKi~~i~vIl~~sllg~~lPl 65 (144)
.+++...+|+.. +++++.+++|..+=+
T Consensus 31 r~EF~~iak~~~-iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 31 KDEYLAVAKVTA-LGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 345566666555 455556667666544
Done!