Query 040032
Match_columns 144
No_of_seqs 112 out of 837
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 06:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 44.1 26 0.0019 24.3 6.0 52 44-95 114-168 (173)
2 d2oara1 f.16.1.1 (A:10-118) Ga 5.7 1.8E+02 0.013 18.2 2.6 21 85-105 7-27 (109)
3 d2bs2c1 f.21.2.1 (C:1-254) Fum 5.6 4.6E+02 0.034 18.2 6.7 32 77-108 23-62 (254)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 4.8 2E+02 0.015 14.7 1.8 14 91-104 8-21 (36)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 3.3 6.4E+02 0.047 16.5 7.5 24 43-66 37-60 (348)
6 d1ppjd2 f.23.11.1 (D:196-241) 3.2 2.7E+02 0.019 14.8 1.6 17 40-56 6-22 (46)
7 d3cx5d2 f.23.11.1 (D:261-307) 3.1 3.6E+02 0.026 14.4 2.0 18 38-55 4-21 (47)
8 d1rh5b_ f.23.28.1 (B:) Preprot 3.0 4.7E+02 0.034 14.4 2.7 25 41-65 22-46 (56)
9 d2py5a1 c.55.3.5 (A:5-187) Exo 3.0 1E+02 0.0075 21.4 -0.6 13 97-109 119-131 (183)
10 d2cvoa2 d.81.1.1 (A:219-383) P 2.7 2.9E+02 0.021 18.1 1.6 10 85-94 1-10 (165)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=44.06 E-value=26 Score=24.33 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhccccCC---CCChhHHHHHHHhhhhHHHHHH
Q 040032 44 KYKLAAIASILVAGAIGVYLPVLGKTIPAL---SPERKIFFLIKAFAAGVILSTG 95 (144)
Q Consensus 44 ~lKi~~i~vIl~~sllg~~lPl~~~~~~~~---~~~~~~l~l~~~FagGVfLata 95 (144)
..-+...+.+..++++|..+|+.++|.... -..+.+-.+.--+|--++++.|
T Consensus 114 vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g~~iyf~iA 168 (173)
T d2yvxa3 114 VVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVA 168 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555566777778888888877766431 0112334444455555555544
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.68 E-value=1.8e+02 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=15.5
Q ss_pred HhhhhHHHHHHhhhhhHHHHH
Q 040032 85 AFAAGVILSTGFVHVLPDAFE 105 (144)
Q Consensus 85 ~FagGVfLataflHLLPea~E 105 (144)
-+|-||++|+||--+...-.+
T Consensus 7 dLAVgvIiG~AF~~iV~slV~ 27 (109)
T d2oara1 7 DLAVAVVIGTAFTALVTKFTD 27 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999876654444
No 3
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=5.63 E-value=4.6e+02 Score=18.24 Aligned_cols=32 Identities=6% Similarity=-0.125 Sum_probs=20.9
Q ss_pred hhHHHHHHHhhhhHHHHHHhhhhh--------HHHHHhcC
Q 040032 77 RKIFFLIKAFAAGVILSTGFVHVL--------PDAFENLT 108 (144)
Q Consensus 77 ~~~l~l~~~FagGVfLataflHLL--------Pea~E~~~ 108 (144)
+..+....+..|=++..--+.||+ ||++++..
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a 62 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVT 62 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 345666677666666666778887 66666654
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.85 E-value=2e+02 Score=14.75 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=7.2
Q ss_pred HHHHHhhhhhHHHH
Q 040032 91 ILSTGFVHVLPDAF 104 (144)
Q Consensus 91 fLataflHLLPea~ 104 (144)
++||++.-+.|.++
T Consensus 8 ~iAt~LFilvPt~F 21 (36)
T d2axtm1 8 LIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555543
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.28 E-value=6.4e+02 Score=16.54 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhh
Q 040032 43 LKYKLAAIASILVAGAIGVYLPVL 66 (144)
Q Consensus 43 l~lKi~~i~vIl~~sllg~~lPl~ 66 (144)
..+..+.+.++.+.+++|-.+=+.
T Consensus 37 ~~~~~~~~~ii~v~gi~gN~lvi~ 60 (348)
T d1u19a_ 37 FSMLAAYMFLLIMLGFPINFLTLY 60 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeh
Confidence 334445555666777777766543
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.21 E-value=2.7e+02 Score=14.80 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=9.8
Q ss_pred ccchhHHHHHHHHHHHH
Q 040032 40 TQALKYKLAAIASILVA 56 (144)
Q Consensus 40 ~~~l~lKi~~i~vIl~~ 56 (144)
-..+++|+..++.++.+
T Consensus 6 RK~mG~Kv~~~l~~l~~ 22 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLP 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34667777665555443
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.05 E-value=3.6e+02 Score=14.43 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=10.3
Q ss_pred ccccchhHHHHHHHHHHH
Q 040032 38 DKTQALKYKLAAIASILV 55 (144)
Q Consensus 38 d~~~~l~lKi~~i~vIl~ 55 (144)
|+-..+++|...++.++.
T Consensus 4 DeRK~mg~K~~~i~s~l~ 21 (47)
T d3cx5d2 4 DERKRLGLKTVIILSSLY 21 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444567777666554443
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.01 E-value=4.7e+02 Score=14.42 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhh
Q 040032 41 QALKYKLAAIASILVAGAIGVYLPV 65 (144)
Q Consensus 41 ~~l~lKi~~i~vIl~~sllg~~lPl 65 (144)
+....-.++...+++.+++|-.+=+
T Consensus 22 Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 22 EYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455667777777766644
No 9
>d2py5a1 c.55.3.5 (A:5-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
Probab=2.98 E-value=1e+02 Score=21.36 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=9.6
Q ss_pred hhhhHHHHHhcCC
Q 040032 97 VHVLPDAFENLTS 109 (144)
Q Consensus 97 lHLLPea~E~~~~ 109 (144)
+++||.+.+++.+
T Consensus 119 l~lLP~SL~kl~k 131 (183)
T d2py5a1 119 LKKLPFPVKKIAK 131 (183)
T ss_dssp HHHSCSCHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 4788888887654
No 10
>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=2.67 E-value=2.9e+02 Score=18.10 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=6.3
Q ss_pred HhhhhHHHHH
Q 040032 85 AFAAGVILST 94 (144)
Q Consensus 85 ~FagGVfLat 94 (144)
|+++|++|+.
T Consensus 1 CyaT~~il~l 10 (165)
T d2cvoa2 1 CYPTSIQLPL 10 (165)
T ss_dssp HHHHHHHHHH
T ss_pred CchHHHHHHH
Confidence 5666666654
Done!