BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040033
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 35 IATKSFPRDIGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLV 94
+ T +F I ++S ++ K E+G + M + N V+ S+ L++ G IG+ S +
Sbjct: 370 LLTDAFSTAIFKQS--YLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKT 427
Query: 95 DSGS 98
D+ +
Sbjct: 428 DANN 431
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 35 IATKSFPRDIGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLV 94
+ T +F I ++S ++ K E+G + M + N V+ S+ L++ G IG+ S +
Sbjct: 374 LLTDAFSTAIFKQS--YLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKT 431
Query: 95 DSGS 98
D+ +
Sbjct: 432 DANN 435
>pdb|2H6C|A Chain A, Crystal Structure Of Reduced Cprk In Absence Of Any Ligand
pdb|2H6C|B Chain B, Crystal Structure Of Reduced Cprk In Absence Of Any Ligand
Length = 232
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 47 RSCFFMEACVKV---EDGDVIMEVDENAGVRASETLRINGRIGNISPIVLV 94
R+C+F E C++V D D+I E+ +N + + R I +P + +
Sbjct: 103 RTCWFSEECLRVIFRTDEDMIFEIFKNYLTKVAYYARQVAEINTYNPTIRI 153
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 4 TNQTTCRNSSIPVRGLSRAELQERRAKVCATIATKSFPRDI 44
T + T R +P+ GL L RA + IA K +DI
Sbjct: 463 TGEITLRGRVLPIGGLKEKALGAHRAGLTTIIAPKDNEKDI 503
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 69 ENAGVRASETLRINGRIGNISPIVL---VDSGSTHNFISDTFAKKVKNFIVNLILQGVYV 125
E R E R N + P L GST++ I++T K QGVY
Sbjct: 3 EQKKRRLEEGTRANSVAESSPPFPLRSKTSVGSTNSQITETKNK-----------QGVYP 51
Query: 126 IVDFNLRELEGYD 138
I + NLR LEG D
Sbjct: 52 ITESNLRILEGED 64
>pdb|2YZH|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YZH|B Chain B, Crystal Structure Of Peroxiredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YZH|C Chain C, Crystal Structure Of Peroxiredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YZH|D Chain D, Crystal Structure Of Peroxiredoxin-Like Protein From
Aquifex Aeolicus
Length = 171
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 112 KNFIVNLILQGVYVIVDFNLRELEGYDVVLGTQWLRTL 149
K F + +Q V V DF R++E Y V++G L+ +
Sbjct: 94 KRFCESFNIQNVTVASDFRYRDMEKYGVLIGEGALKGI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,487,038
Number of Sequences: 62578
Number of extensions: 167287
Number of successful extensions: 413
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 19
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)