BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040033
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 5 NQTTCRNSSIPVRGLSRAELQERRAKVCATIATKSFPRDIGERSCFFMEACVKVEDG 61
N C NS I S A++ E R+ T++ K FPR I S F+ C+++E+
Sbjct: 673 NMLYCTNSYI-----SLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLCMQLEES 724
>sp|Q5A455|SEC23_CANAL Protein transport protein SEC23 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=SEC23 PE=3 SV=1
Length = 762
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 35 IATKSFPRDIGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLV 94
+ T +F I +RS F+ K ++G ++M + N VR S+ L+I+G IGN S + +
Sbjct: 371 LLTDAFTTSIFKRS--FLRLFNKDDEGYLLMGFNGNLEVRTSKELKISGLIGNASSLQVK 428
Query: 95 DSGSTHN 101
+ + N
Sbjct: 429 SANVSEN 435
>sp|Q9CC57|HISX_MYCLE Histidinol dehydrogenase OS=Mycobacterium leprae (strain TN)
GN=hisD PE=3 SV=1
Length = 449
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 15 PVRGLSRAELQERRAKVCATIATKSFPRDIGERSCFF-----MEACVKVEDGDVIMEVDE 69
P L+ A E A++ T+ K +G R +EA VKV V + E
Sbjct: 291 PSTDLADATDAELAAQLRTTVHRKRVVAALGGRQSAIILVDDLEAGVKV----VNLYAAE 346
Query: 70 NAGVRASETLRINGRI--------GNISPIVLVD--SGSTHNFISDTFAKKVKNFIVNLI 119
+ ++ +E R+ RI G +P+ L D +GS H + FA+ V
Sbjct: 347 HLEIQTAEASRVASRIRCAGAIFVGPWAPVSLGDYCAGSNHVLPTAGFARHSGGLSVQTF 406
Query: 120 LQGVYVI--VDFNLRELEGYDVVL 141
L+G++V+ L+++ G+ + L
Sbjct: 407 LRGIHVVNYTKTALKDISGHVITL 430
>sp|Q6CEE1|NAGS_YARLI Amino-acid acetyltransferase, mitochondrial OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=ARG2 PE=3 SV=1
Length = 608
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 44 IGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLVDSGSTHNFI 103
+G+ A +K+ D I ++++ + ET+ R+G +SPIV+VD+G N
Sbjct: 107 LGDSEGTLRVAIIKIRD---IKSIEDDLIAQMGETIARLSRLG-VSPIVVVDAGKARNDF 162
Query: 104 SDTFAKKVKNFIVNLILQGVYVIVD 128
K +++ LILQ V+ I D
Sbjct: 163 LKLDNKPFRHY-QKLILQKVFKISD 186
>sp|Q9RXG4|LON_DEIRA Lon protease OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=lon PE=3 SV=1
Length = 821
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 4 TNQTTCRNSSIPVRGLSRAELQERRAKVCATIATKSFPRDIGE-----RSCFFMEACVKV 58
T + T +P+ GL L RRA + I K+ RDI + RS C V
Sbjct: 716 TGEMTLTGRYLPIGGLKEKVLGARRAGIKHIILPKANERDINDIPLHLRSSMRFHPCETV 775
Query: 59 EDGDVIMEVDENAGVRASETLRINGRIGNISPIVLVDSGS 98
D +++V G++A ET R + + ++P DSGS
Sbjct: 776 ---DQVLDVALVGGLKALETPRTDSQ---VTPP--ADSGS 807
>sp|P98089|MUC2L_RAT Intestinal mucin-like protein (Fragment) OS=Rattus norvegicus PE=2
SV=1
Length = 837
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 2 PTTNQTTCRNSSIPVRGLSRAELQERRA-------KVCATIATKSFPRDIGERSCFFMEA 54
PT ++ +NS++ V G E + A K+C + + PR+ GE F +
Sbjct: 435 PTCQSSSPKNSTLLVEGCFCPEGTTKFAPGYDVCVKICGCVGPDNVPREFGEHFEFDCKD 494
Query: 55 CVKVEDGDVIM 65
CV +E G I+
Sbjct: 495 CVCLEGGSGIV 505
>sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1
SV=2
Length = 958
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 29/95 (30%)
Query: 93 LVDSGSTHNFISDTFA------KKVKNFIV-------------NLILQGVYVIVDF-NLR 132
++DSG++ NFI F ++K++ V +IL+ ++IVD + R
Sbjct: 419 MIDSGASGNFIDQDFVIQNAIPLRIKDWPVMVEAIDGHPIASGPIILETHHLIVDLGDHR 478
Query: 133 ELEGYDV--------VLGTQWLRTLEP-ILWDFAS 158
E+ +DV VLG +WL T +P I W S
Sbjct: 479 EILSFDVTQSPFFPIVLGIRWLSTHDPHITWSTRS 513
>sp|Q8TBY8|PMFBP_HUMAN Polyamine-modulated factor 1-binding protein 1 OS=Homo sapiens
GN=PMFBP1 PE=2 SV=1
Length = 1022
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 18 GLSRAELQERRAKVCATIATKSFPRDIGER 47
G SR E +R KVC T+ K P+D+G+R
Sbjct: 966 GPSRTE-STQREKVCGTLGWKGLPQDMGQR 994
>sp|P75296|Y489_MYCPN Uncharacterized lipoprotein MG338 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_489 PE=3 SV=1
Length = 1300
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 73 VRASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKN 113
V+ SET N + I P L++S ST+NF ++ F K K+
Sbjct: 1063 VQGSETNWFNDKSTPIKPDSLLESESTYNFTAEPFDDKTKS 1103
>sp|Q44613|LOLD_BUCAP Lipoprotein-releasing system ATP-binding protein LolD OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=lolD PE=3 SV=1
Length = 229
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 37 TKSFPRDIGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLVDS 96
TKSF R E + +K+ GD+ ++ +++ + G S +L D
Sbjct: 13 TKSFYRKKEEIRTL-NKISLKIRKGDITFITGKSGSGKSTLLHLLGGLDKPTSGSILFDG 71
Query: 97 GSTHNFISDTFAKKVKNFIVNLILQGVYVIVDFNLRE 133
S H+ S+ A K++N + I Q ++++DFN+ E
Sbjct: 72 VSLHSMSSNEIA-KLRNLKLGFIFQFHHLLLDFNVLE 107
>sp|Q9SYZ0|KCS16_ARATH 3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2
SV=1
Length = 493
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 59 EDGDVIMEVDENAGVRASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFIVNL 118
EDG V + + +N + A+ TL+IN I + P+VL S H F+ + VK +N
Sbjct: 317 EDGIVGVSLSKNLPMVAARTLKIN--IATLGPLVLPISEKFHFFV-----RFVKKKFLNP 369
Query: 119 ILQGVYVIVDFNL 131
L+ + I DF L
Sbjct: 370 KLK--HYIPDFKL 380
>sp|A5E7S3|SEC23_LODEL Protein transport protein SEC23 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=SEC23 PE=3 SV=1
Length = 768
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 35 IATKSFPRDIGERSCFFMEACVKVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLV 94
+ + +F I +RS F+ K E+G ++M + +R S+ L+++G IGN S + +
Sbjct: 375 LLSDAFTTSIFKRS--FLRLFNKDEEGYLLMGFNGTFEIRTSKELKVSGLIGNASSLGVK 432
Query: 95 DSGSTHN 101
S + N
Sbjct: 433 TSNVSEN 439
>sp|Q8YXG8|ARGB_NOSS1 Acetylglutamate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=argB PE=3 SV=1
Length = 297
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 70 NAGVRASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKV 111
N ++ ETL NG I +S + DSG +N +DT A ++
Sbjct: 157 NVNIKILETLASNGYIPVVSSVAADDSGQAYNINADTVAGEI 198
>sp|A9A2Q6|PYRI_NITMS Aspartate carbamoyltransferase regulatory chain OS=Nitrosopumilus
maritimus (strain SCM1) GN=pyrI PE=3 SV=1
Length = 153
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 57 KVEDGDVIMEVDENAGVRASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKK 110
++++G VI +DE G++ LRI+G G++ I L N S F KK
Sbjct: 10 RIKEGTVIDHIDEGKGIQVLNALRIDGSDGSLITIAL-------NVPSGKFKKK 56
>sp|Q3MFQ8|ARGB_ANAVT Acetylglutamate kinase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=argB PE=3 SV=1
Length = 297
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 70 NAGVRASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKV 111
N ++ ETL NG I +S + DSG +N +DT A ++
Sbjct: 157 NVNIKILETLASNGYIPVVSSVAADDSGQAYNINADTVAGEI 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,509,544
Number of Sequences: 539616
Number of extensions: 2153068
Number of successful extensions: 5665
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5656
Number of HSP's gapped (non-prelim): 19
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)