Query 040033
Match_columns 158
No_of_seqs 144 out of 791
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.8 1.8E-19 6.3E-24 132.0 11.3 82 76-158 22-127 (148)
2 2i1a_A DNA damage-inducible pr 99.7 3.3E-17 1.1E-21 119.2 10.7 82 75-158 23-128 (148)
3 3slz_A GAG-Pro-POL polyprotein 98.7 2.3E-08 7.8E-13 71.5 7.1 80 74-156 18-114 (132)
4 1fmb_A EIAV protease; hydrolas 98.7 1.9E-07 6.5E-12 64.1 10.2 76 78-156 8-104 (104)
5 3ec0_A Protease; HIV-2, inhibi 98.5 1.9E-06 6.6E-11 58.5 9.8 69 80-156 10-99 (99)
6 2hs1_A HIV-1 protease; ultra-h 98.4 2E-06 6.7E-11 58.5 8.5 73 80-156 10-99 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.2 1.7E-05 5.7E-10 60.3 9.9 71 79-157 9-100 (203)
8 1nc8_A Nucleocapsid protein; H 98.0 8.7E-07 3E-11 46.9 0.3 20 29-48 6-25 (29)
9 1a6b_B Momulv, zinc finger pro 98.0 2.2E-06 7.4E-11 48.8 1.2 19 30-48 11-29 (40)
10 2hah_A Protease, retropepsin; 98.0 3.3E-05 1.1E-09 53.8 7.5 69 83-151 18-112 (116)
11 1dsq_A Nucleic acid binding pr 97.9 2E-06 6.9E-11 44.3 0.9 19 30-48 3-21 (26)
12 1u6p_A GAG polyprotein; MLV, A 97.7 6.9E-06 2.4E-10 50.0 1.0 19 30-48 24-42 (56)
13 3ka2_A [L-Ala51;Gly51']HIV-1 p 97.5 0.0008 2.7E-08 51.1 10.0 70 79-156 113-203 (203)
14 3sqf_A Protease; folded monome 97.2 0.00089 3.1E-08 46.3 6.4 74 80-156 11-107 (114)
15 2ysa_A Retinoblastoma-binding 97.2 8E-05 2.7E-09 45.1 0.9 19 30-48 8-26 (55)
16 2ec7_A GAG polyprotein (PR55GA 97.0 0.00017 5.8E-09 42.5 1.0 19 30-48 7-25 (49)
17 2bl6_A Nucleocapsid protein P1 97.0 0.00022 7.5E-09 39.5 1.3 18 31-48 2-19 (37)
18 2a51_A Nucleocapsid protein; s 96.9 0.0002 6.9E-09 40.1 0.8 18 31-48 2-19 (39)
19 2a51_A Nucleocapsid protein; s 96.9 0.00024 8.3E-09 39.7 1.0 18 30-47 22-39 (39)
20 2ihx_A Nucleocapsid (NC) prote 96.9 0.00027 9.2E-09 43.5 1.0 19 30-48 5-23 (61)
21 2bl6_A Nucleocapsid protein P1 96.9 0.00023 8E-09 39.3 0.7 18 30-47 20-37 (37)
22 2ec7_A GAG polyprotein (PR55GA 96.7 0.0004 1.4E-08 40.8 1.1 19 30-48 28-46 (49)
23 1cl4_A Protein (GAG polyprotei 96.7 0.00042 1.4E-08 42.4 1.2 19 30-48 31-49 (60)
24 1a1t_A Nucleocapsid protein; s 96.7 0.00043 1.5E-08 41.6 0.9 19 30-48 13-31 (55)
25 2ihx_A Nucleocapsid (NC) prote 96.6 0.00043 1.5E-08 42.5 0.8 19 30-48 31-49 (61)
26 1cl4_A Protein (GAG polyprotei 96.6 0.0003 1E-08 43.0 0.0 19 30-48 2-20 (60)
27 3nyb_B Protein AIR2; polya RNA 96.6 0.00044 1.5E-08 45.3 0.8 19 30-48 47-65 (83)
28 2cqf_A RNA-binding protein LIN 96.6 0.00065 2.2E-08 42.0 1.4 18 30-47 8-25 (63)
29 1a1t_A Nucleocapsid protein; s 96.5 0.0006 2.1E-08 40.9 0.8 19 30-48 34-52 (55)
30 2li8_A Protein LIN-28 homolog 96.5 0.00046 1.6E-08 44.2 0.2 18 30-47 25-42 (74)
31 2cqf_A RNA-binding protein LIN 96.4 0.00092 3.1E-08 41.4 1.1 19 30-48 30-48 (63)
32 2li8_A Protein LIN-28 homolog 96.1 0.0014 4.9E-08 41.8 0.8 19 30-48 47-65 (74)
33 2lli_A Protein AIR2; RNA surve 95.4 0.0035 1.2E-07 43.6 0.7 19 30-48 106-124 (124)
34 3ts2_A Protein LIN-28 homolog 95.3 0.0043 1.5E-07 44.7 0.8 18 30-47 98-115 (148)
35 3ts2_A Protein LIN-28 homolog 95.0 0.0059 2E-07 44.0 0.8 17 32-48 122-138 (148)
36 3nyb_B Protein AIR2; polya RNA 94.9 0.0066 2.3E-07 39.6 0.8 19 30-48 6-24 (83)
37 2rsp_A RSV protease; hydrolase 94.1 0.028 9.4E-07 39.4 2.6 70 85-154 27-122 (124)
38 2lli_A Protein AIR2; RNA surve 93.9 0.019 6.5E-07 39.8 1.3 17 31-47 24-41 (124)
39 3liy_A Protease; hydrolase, hy 93.1 0.069 2.4E-06 36.8 3.1 28 80-107 12-44 (116)
40 2pma_A Uncharacterized protein 92.9 0.25 8.5E-06 35.4 5.9 38 117-155 97-136 (146)
41 2jys_A Protease/reverse transc 91.4 1.4 4.6E-05 29.3 7.6 67 81-150 10-97 (107)
42 1lya_A Cathepsin D; lysosomal 89.2 0.58 2E-05 30.7 4.5 28 78-105 14-43 (97)
43 1bxo_A Protein (penicillopepsi 76.9 2.9 9.9E-05 32.8 4.5 28 78-105 16-43 (323)
44 1izd_A Aspartic proteinase; su 76.6 3 0.0001 32.7 4.5 28 78-105 16-43 (323)
45 1yg9_A Aspartic protease BLA G 75.6 3 0.0001 32.8 4.3 26 79-104 19-44 (330)
46 1ibq_A Aspergillopepsin; aspar 75.0 3.2 0.00011 32.6 4.3 28 78-105 15-42 (325)
47 1b5f_A Protein (cardosin A); h 74.5 3.9 0.00013 30.7 4.5 27 78-104 14-42 (239)
48 1b5f_A Protein (cardosin A); h 71.9 4.5 0.00015 30.3 4.3 29 83-111 197-232 (239)
49 2apr_A Rhizopuspepsin; hydrola 71.7 4.3 0.00015 31.8 4.3 28 78-105 16-45 (325)
50 1oew_A Endothiapepsin; hydrola 70.5 5.2 0.00018 31.4 4.5 28 78-105 16-45 (329)
51 1wkr_A Polyporopepsin; hydrola 70.3 4.8 0.00017 31.6 4.3 28 78-105 13-42 (340)
52 3c9x_A Trichoderma reesei aspa 70.2 5.3 0.00018 31.3 4.5 28 78-105 16-45 (329)
53 2qzx_A Candidapepsin-5; aspart 70.2 5.3 0.00018 31.4 4.5 27 78-104 13-41 (342)
54 1j71_A Candidapepsin, aspartic 69.4 5.6 0.00019 31.2 4.5 27 78-104 13-41 (334)
55 1mpp_A Pepsin; hydrolase(acid 68.9 5.3 0.00018 31.7 4.3 28 78-105 19-48 (361)
56 1dpj_A Proteinase A; proteinas 68.8 5.9 0.0002 31.0 4.5 27 78-104 14-42 (329)
57 3fv3_A SAPP1P-secreted asparti 68.0 6.2 0.00021 30.9 4.5 27 78-104 13-41 (339)
58 1lya_B Cathepsin D; lysosomal 67.9 4.9 0.00017 29.9 3.7 74 83-157 108-231 (241)
59 2qp8_A Beta-secretase 1; BACE1 67.9 6.1 0.00021 31.8 4.5 28 78-105 22-51 (395)
60 3pvk_A Candidapepsin-2; hydrol 65.8 7.3 0.00025 30.5 4.5 27 78-104 13-41 (342)
61 2ewy_A Beta-secretase 2; BACE2 65.8 7.1 0.00024 31.1 4.5 27 78-104 14-42 (383)
62 4aa9_A Chymosin; hydrolase, as 65.6 6.9 0.00024 30.3 4.3 27 79-105 13-41 (320)
63 3cms_A Chymosin B; hydrolase, 65.5 7.5 0.00026 30.3 4.5 27 78-104 15-43 (323)
64 1htr_B Gastricsin; aspartyl pr 64.7 7.9 0.00027 30.2 4.5 28 78-105 13-42 (329)
65 1am5_A Pepsin, acid proteinase 64.5 8.1 0.00028 30.1 4.5 28 78-105 13-42 (324)
66 3cms_A Chymosin B; hydrolase, 64.4 8.1 0.00028 30.1 4.5 74 83-157 198-313 (323)
67 3vf3_A Beta-secretase 1; struc 64.4 7.8 0.00027 31.2 4.5 27 78-104 29-57 (402)
68 3aup_A SBG7S, BG, basic 7S glo 64.2 7.7 0.00026 31.3 4.5 28 78-105 22-51 (403)
69 3aup_A SBG7S, BG, basic 7S glo 63.5 6.6 0.00022 31.7 3.9 19 92-110 262-280 (403)
70 2jmo_A Parkin; IBR, E3 ligase, 63.2 1.4 4.9E-05 27.9 -0.1 17 30-47 59-75 (80)
71 1t6e_X Xylanase inhibitor; two 62.9 6.4 0.00022 31.6 3.7 27 83-109 213-249 (381)
72 1wkr_A Polyporopepsin; hydrola 62.6 8.2 0.00028 30.3 4.3 30 82-111 194-228 (340)
73 1tzs_A Cathepsin E; hydrolase, 62.4 7.7 0.00026 30.7 4.1 27 79-105 25-53 (351)
74 3k1w_A Renin; protease, altern 62.0 9.5 0.00032 29.8 4.5 27 78-104 19-47 (341)
75 2bju_A Plasmepsin II; aspartic 61.3 9.4 0.00032 31.8 4.5 28 78-105 139-168 (453)
76 2x0b_A Renin; hydrolase-hormon 60.8 10 0.00034 30.7 4.5 28 78-105 62-91 (383)
77 3pvk_A Candidapepsin-2; hydrol 60.4 10 0.00036 29.5 4.5 29 83-111 201-234 (342)
78 3lpj_A Beta-secretase 1; alzhe 60.4 10 0.00034 31.2 4.5 27 78-104 75-103 (455)
79 2ewy_A Beta-secretase 2; BACE2 59.8 6.8 0.00023 31.3 3.3 29 83-111 204-242 (383)
80 1dpj_A Proteinase A; proteinas 59.2 12 0.00039 29.2 4.5 74 83-157 201-319 (329)
81 1yg9_A Aspartic protease BLA G 59.2 9 0.00031 30.0 3.9 74 83-157 202-319 (330)
82 2qzx_A Candidapepsin-5; aspart 58.6 12 0.0004 29.4 4.5 29 83-111 202-234 (342)
83 3qvc_A Histo-aspartic protease 58.4 10 0.00034 31.5 4.2 27 79-105 139-167 (451)
84 1miq_A Plasmepsin; aspartic pr 57.9 16 0.00056 29.2 5.3 33 79-111 243-278 (375)
85 1tzs_A Cathepsin E; hydrolase, 57.9 12 0.00041 29.5 4.5 29 83-111 210-244 (351)
86 1mpp_A Pepsin; hydrolase(acid 56.5 11 0.00038 29.7 4.1 29 83-111 218-253 (361)
87 4aa9_A Chymosin; hydrolase, as 56.3 12 0.0004 29.0 4.1 74 83-157 195-310 (320)
88 2qp8_A Beta-secretase 1; BACE1 56.3 8.4 0.00029 30.9 3.3 28 83-110 215-252 (395)
89 1am5_A Pepsin, acid proteinase 56.2 9.4 0.00032 29.7 3.5 74 83-157 197-314 (324)
90 1j71_A Candidapepsin, aspartic 55.9 14 0.00047 28.9 4.5 29 83-111 202-234 (334)
91 3fv3_A SAPP1P-secreted asparti 55.8 11 0.00037 29.5 3.8 28 84-111 205-236 (339)
92 3psg_A Pepsinogen; hydrolase(a 55.8 14 0.00047 29.6 4.5 27 79-105 58-86 (370)
93 3k1w_A Renin; protease, altern 55.2 14 0.00049 28.7 4.5 74 83-157 208-330 (341)
94 1qdm_A Prophytepsin; aspartic 54.6 13 0.00044 31.0 4.3 27 78-104 53-81 (478)
95 1htr_B Gastricsin; aspartyl pr 53.7 8.5 0.00029 30.0 2.9 74 83-157 198-319 (329)
96 3vf3_A Beta-secretase 1; struc 53.2 10 0.00035 30.5 3.3 28 83-110 222-259 (402)
97 2ct7_A Ring finger protein 31; 52.3 3.1 0.00011 26.5 0.1 18 30-47 52-72 (86)
98 3qvc_A Histo-aspartic protease 51.9 22 0.00076 29.4 5.3 78 79-157 318-439 (451)
99 1miq_A Plasmepsin; aspartic pr 51.6 6.7 0.00023 31.5 2.0 27 79-105 64-92 (375)
100 1bxo_A Protein (penicillopepsi 50.7 13 0.00044 28.9 3.5 69 88-157 206-313 (323)
101 1izd_A Aspartic proteinase; su 50.2 12 0.0004 29.3 3.2 69 88-157 207-313 (323)
102 3lpj_A Beta-secretase 1; alzhe 50.2 12 0.0004 30.8 3.3 29 83-111 268-306 (455)
103 3vla_A EDGP; extracellular, in 49.5 24 0.00083 28.7 5.1 28 77-104 20-49 (413)
104 2pma_A Uncharacterized protein 49.3 10 0.00036 26.8 2.5 20 87-106 17-36 (146)
105 3vla_A EDGP; extracellular, in 49.1 13 0.00046 30.2 3.5 18 91-108 267-284 (413)
106 1oew_A Endothiapepsin; hydrola 46.4 17 0.00057 28.4 3.5 73 83-156 201-318 (329)
107 2x0b_A Renin; hydrolase-hormon 45.8 19 0.00064 29.1 3.8 74 83-157 251-373 (383)
108 3c9x_A Trichoderma reesei aspa 44.6 14 0.00047 28.9 2.8 23 89-111 213-235 (329)
109 1ibq_A Aspergillopepsin; aspar 44.5 16 0.00054 28.5 3.1 68 89-157 208-315 (325)
110 1qdm_A Prophytepsin; aspartic 41.0 30 0.001 28.7 4.5 29 83-111 240-275 (478)
111 2apr_A Rhizopuspepsin; hydrola 37.5 25 0.00086 27.3 3.3 68 89-157 212-314 (325)
112 2bju_A Plasmepsin II; aspartic 33.7 33 0.0011 28.4 3.5 29 83-111 323-354 (453)
113 3psg_A Pepsinogen; hydrolase(a 33.3 26 0.00087 28.0 2.7 68 89-157 253-360 (370)
114 2hqh_E Restin; beta/BETA struc 28.4 11 0.00037 18.8 -0.2 18 30-47 4-21 (26)
115 1t6e_X Xylanase inhibitor; two 25.0 61 0.0021 25.7 3.6 24 78-104 15-38 (381)
116 2lk0_A RNA-binding protein 5; 24.1 17 0.00058 18.7 0.1 9 30-38 20-28 (32)
117 1ef4_A Subunit N, DNA-directed 23.8 18 0.00063 21.3 0.2 9 30-38 4-12 (55)
118 4ayb_N DNA-directed RNA polyme 20.6 18 0.00062 22.1 -0.3 9 30-38 5-13 (66)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=132.02 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=75.7
Q ss_pred CceEEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE------------------------EEEEECCEEEEEEEEE
Q 040033 76 SETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI------------------------VNLILQGVYVIVDFNL 131 (158)
Q Consensus 76 ~~~i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~------------------------A~i~i~g~~~~~~~~v 131 (158)
...+.+.+.|||+++++||||||+++||+.++|+++|+.. +++++++..+.++|.|
T Consensus 22 ~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~V 101 (148)
T 3s8i_A 22 VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSI 101 (148)
T ss_dssp CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEEE
Confidence 5678899999999999999999999999999999999852 2789999999999999
Q ss_pred ecCCCCcEEechhHhhhcCCceeeecC
Q 040033 132 RELEGYDVVLGTQWLRTLEPILWDFAS 158 (158)
Q Consensus 132 ~~~~~~dvILG~dwL~~~~~i~idw~~ 158 (158)
++...+|+|||||||++++. .|||++
T Consensus 102 le~~~~d~LLGmD~L~~~~~-~ID~~~ 127 (148)
T 3s8i_A 102 LEDQPMDMLLGLDMLRRHQC-SIDLKK 127 (148)
T ss_dssp ETTCSSSEEECHHHHHHTTC-EEETTT
T ss_pred eCCCCcCeeccHHHHHhCCE-EEEcCC
Confidence 99999999999999999997 899974
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.3e-17 Score=119.18 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=73.4
Q ss_pred cCceEEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE------------------------EEEEECCEEEEEEEE
Q 040033 75 ASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI------------------------VNLILQGVYVIVDFN 130 (158)
Q Consensus 75 ~~~~i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~------------------------A~i~i~g~~~~~~~~ 130 (158)
....+.+.+.|||+++.+||||||++++|+.++|+++|+.. +.+.+++..+.++|.
T Consensus 23 ~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~~~~~~~~~~i~ig~~~~~~~~~ 102 (148)
T 2i1a_A 23 QVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFT 102 (148)
T ss_dssp CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-----------CEEEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcccccEEEEEEEEECCEEeceeEE
Confidence 35678899999999999999999999999999999998642 178899999999999
Q ss_pred EecCCCCcEEechhHhhhcCCceeeecC
Q 040033 131 LRELEGYDVVLGTQWLRTLEPILWDFAS 158 (158)
Q Consensus 131 v~~~~~~dvILG~dwL~~~~~i~idw~~ 158 (158)
|++ .++|+|||||||++++. .|||.+
T Consensus 103 vl~-~~~d~iLG~d~L~~~~~-~ID~~~ 128 (148)
T 2i1a_A 103 VLD-TDIDVLIGLDMLKRHLA-CVDLKE 128 (148)
T ss_dssp EEC-SSCSEEECHHHHHHTTC-EEETTT
T ss_pred Eec-CCCCeEecHHHHhhCCE-EEECCC
Confidence 999 77999999999999987 899863
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=98.75 E-value=2.3e-08 Score=71.46 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=60.3
Q ss_pred ccCceEEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE-----E------------EEEECCEEEEEEEEEecCCC
Q 040033 74 RASETLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI-----V------------NLILQGVYVIVDFNLRELEG 136 (158)
Q Consensus 74 ~~~~~i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~-----A------------~i~i~g~~~~~~~~v~~~~~ 136 (158)
++.....+.++|+|+++.+|+||||+.+.+++.-+. ...+. | .+++.++.....+.|++-.
T Consensus 18 d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-~~~~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~lV~~~t- 95 (132)
T 3slz_A 18 EPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-LSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC- 95 (132)
T ss_dssp CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-EEEEEEEEECSSCEEEEEEECCEEEEETTEEEEECCEECTTS-
T ss_pred CccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-CCCCceEEEccCCEEEEEEEeeeEEEECCeeecceEEEECCC-
Confidence 344455678999999999999999999999986554 22211 0 5788888888777664333
Q ss_pred CcEEechhHhhhcCCceeee
Q 040033 137 YDVVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 137 ~dvILG~dwL~~~~~i~idw 156 (158)
...|||+|||.+++. .+++
T Consensus 96 PvnLLGrd~Ltqlg~-tL~f 114 (132)
T 3slz_A 96 PYPLLGRDLLTKLKA-QIHF 114 (132)
T ss_dssp SSCEECHHHHHHHTC-EEEE
T ss_pred CccEECHhhHhhCCc-EEEC
Confidence 357899999999997 7876
No 4
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=98.70 E-value=1.9e-07 Score=64.08 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=60.8
Q ss_pred eEEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE---------------------EEEEECCEEEEEEEEEecCCC
Q 040033 78 TLRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI---------------------VNLILQGVYVIVDFNLRELEG 136 (158)
Q Consensus 78 ~i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~---------------------A~i~i~g~~~~~~~~v~~~~~ 136 (158)
...+.++|+|+...+|+||||..++|+.+.+.+++++. ..+++.|+.....++|-+.
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~GiGG~i~v~~~~i~i~i~g~~~~gtvlv~~t-- 85 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRMLVADI-- 85 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEETTEEECCEEEEEEEEETTEEEEEEEEEESC--
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEeCCCeEEeeEeeeEEEECCeEEEEEEEECCC--
Confidence 34567999999999999999999999998887655332 1677888888888888663
Q ss_pred CcEEechhHhhhcCCceeee
Q 040033 137 YDVVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 137 ~dvILG~dwL~~~~~i~idw 156 (158)
..=|+|+|||.+.+. .+||
T Consensus 86 p~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 86 PVTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp SSCEECHHHHHHTTC-CCCC
T ss_pred CCCEecHhHHhhcCc-EEeC
Confidence 346899999999997 6664
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.45 E-value=1.9e-06 Score=58.46 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=54.5
Q ss_pred EEEEEECCEeeEEEecCCCceeEECHHHHHHcCCe----E----E-------------EEEECCEEEEEEEEEecCCCCc
Q 040033 80 RINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNF----I----V-------------NLILQGVYVIVDFNLRELEGYD 138 (158)
Q Consensus 80 ~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~----~----A-------------~i~i~g~~~~~~~~v~~~~~~d 138 (158)
.+.++|+|+.+.+|+||||.++.|++ ..++ . + ++++.|+.....++|-+. +.
T Consensus 10 ~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV~~t-Pv- 82 (99)
T 3ec0_A 10 VVTAYIEGQPVEVLLDTGADDSIVAG-----IELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT-PI- 82 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEESS-----CCCCSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEECC-SS-
T ss_pred eEEEEECCEEEEEEEecCCCceEEcC-----cccCCCCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEeCCC-Cc-
Confidence 46789999999999999999999974 3333 1 1 778899988888888553 23
Q ss_pred EEechhHhhhcCCceeee
Q 040033 139 VVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 139 vILG~dwL~~~~~i~idw 156 (158)
=|+|+|+|.+.+. +++|
T Consensus 83 niiGRnlLtqlG~-tLnf 99 (99)
T 3ec0_A 83 NIFGRNILTALGM-SLNL 99 (99)
T ss_dssp CEECHHHHHHHTC-EEEC
T ss_pred CeeehhhHhhcCc-EEeC
Confidence 5799999999997 7765
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.39 E-value=2e-06 Score=58.46 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=55.4
Q ss_pred EEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE-----------------EEEEECCEEEEEEEEEecCCCCcEEec
Q 040033 80 RINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI-----------------VNLILQGVYVIVDFNLRELEGYDVVLG 142 (158)
Q Consensus 80 ~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~-----------------A~i~i~g~~~~~~~~v~~~~~~dvILG 142 (158)
.+.++|+|+...||+||||..++|++.-... ..+. -++++.|+.....++|-+. .. =|+|
T Consensus 10 ~vtvkI~Gq~~eaLLDTGAD~TVl~~~~~p~-~wkpk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV~~t-Pv-niiG 86 (99)
T 2hs1_A 10 LVTIKIGGQLKEALLDTGADDTIIEEMSLPG-RWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT-PV-NIIG 86 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSEEESCCSSCC-CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCC-SS-CEEC
T ss_pred EEEEEECCEEEEEEeccCCCcEEEecccCCC-CCCCcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEeCCC-cc-Cchh
Confidence 4678999999999999999999999632211 1111 1778899998888888553 23 4899
Q ss_pred hhHhhhcCCceeee
Q 040033 143 TQWLRTLEPILWDF 156 (158)
Q Consensus 143 ~dwL~~~~~i~idw 156 (158)
+|||.+.+. +++|
T Consensus 87 Rd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 87 RNLLTQIGA-TLNF 99 (99)
T ss_dssp HHHHTTTTC-EEEC
T ss_pred HhHHHHcCC-EEeC
Confidence 999999997 6765
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.15 E-value=1.7e-05 Score=60.35 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred EEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE---------------------EEEEECCEEEEEEEEEecCCCC
Q 040033 79 LRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI---------------------VNLILQGVYVIVDFNLRELEGY 137 (158)
Q Consensus 79 i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~---------------------A~i~i~g~~~~~~~~v~~~~~~ 137 (158)
..+.++|+|+.+.+|+||||.++.+.+ .+++- .++++.|+.....++|-+. ..
T Consensus 9 P~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lpg~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlVg~t-Pv 82 (203)
T 3ka2_A 9 PLVTIRIGGQLKEALLDTGADDTVIEE-----LNLPGXWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLVGPT-PV 82 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEECS-----CCCSSCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCC-SS
T ss_pred CeEEEEECCEEEEEEEecCCCceEEec-----ccCCCCCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEeeCCC-Cc
Confidence 356799999999999999999999984 33332 1778899998888888553 34
Q ss_pred cEEechhHhhhcCCceeeec
Q 040033 138 DVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 138 dvILG~dwL~~~~~i~idw~ 157 (158)
+ |+|+|.|.+++. .++|.
T Consensus 83 n-IiGRd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 83 N-IIGRNLLTQIGX-TLNFX 100 (203)
T ss_dssp C-EECHHHHTTTTC-EEEGG
T ss_pred C-ccchhhhhhcCc-eEEec
Confidence 4 899999999997 78874
No 8
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.02 E-value=8.7e-07 Score=46.92 Aligned_cols=20 Identities=5% Similarity=0.023 Sum_probs=18.0
Q ss_pred ccceeecCCCCCCCccCCcc
Q 040033 29 AKVCATIATKSFPRDIGERS 48 (158)
Q Consensus 29 ~~~Cf~Cg~~gH~~~~C~~~ 48 (158)
...||+||+.||++++|+.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 37799999999999999875
No 9
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.95 E-value=2.2e-06 Score=48.76 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=18.1
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||+.||.+++||++
T Consensus 11 ~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSS
T ss_pred CeeeECCCCCcchhhCcCC
Confidence 7899999999999999986
No 10
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=97.95 E-value=3.3e-05 Score=53.81 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=49.7
Q ss_pred EEECCEeeEEEecCCCceeEECHHHHHHcCCe------E--------------EEEEECCEE-----EEEEEEEec-CCC
Q 040033 83 GRIGNISPIVLVDSGSTHNFISDTFAKKVKNF------I--------------VNLILQGVY-----VIVDFNLRE-LEG 136 (158)
Q Consensus 83 ~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~------~--------------A~i~i~g~~-----~~~~~~v~~-~~~ 136 (158)
++|+|+.+.+|+||||..++|++.-....... + -.+++.++. ....++|.+ ...
T Consensus 18 ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~~gtvlV~p~tP~ 97 (116)
T 2hah_A 18 IFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNST 97 (116)
T ss_dssp EEETTEEEEEEECTTCSSCEEEGGGCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEEEEEEEEETTCCC
T ss_pred EEECCEEEEEEecCCCCcEEEcccccccCCCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCcceeEEEEEECCCCCc
Confidence 99999999999999999999997433100111 1 055677765 667778877 431
Q ss_pred CcEEechhHhhhcCC
Q 040033 137 YDVVLGTQWLRTLEP 151 (158)
Q Consensus 137 ~dvILG~dwL~~~~~ 151 (158)
.-=|+|+|+|.+.+.
T Consensus 98 ~vniiGRd~Ltqlg~ 112 (116)
T 2hah_A 98 PVNILGRDNMIKFNI 112 (116)
T ss_dssp SSEEECHHHHTTTTC
T ss_pred cccEecHHHHhHcCC
Confidence 235899999999986
No 11
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.94 E-value=2e-06 Score=44.33 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=17.4
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||+.||++++||++
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999999975
No 12
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.73 E-value=6.9e-06 Score=50.03 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=18.1
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||+.||++++||++
T Consensus 24 ~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTC
T ss_pred CcceeCCCCCcccccCcCC
Confidence 7799999999999999986
No 13
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=97.53 E-value=0.0008 Score=51.07 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred EEEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE---------------------EEEEECCEEEEEEEEEecCCCC
Q 040033 79 LRINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI---------------------VNLILQGVYVIVDFNLRELEGY 137 (158)
Q Consensus 79 i~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~---------------------A~i~i~g~~~~~~~~v~~~~~~ 137 (158)
-.+.++|+|+.+.+|+||||.++.|.+ ..++- .++++.|+.....++|-+. .
T Consensus 113 P~~~iki~Gq~~e~LlDTGAD~TVl~~-----~~lpg~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlVgpt--P 185 (203)
T 3ka2_A 113 PLVTIRIGGQLKEALLDTGADDTVIEE-----LNLPGXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLVGPT--P 185 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEECS-----CCCCSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCC--S
T ss_pred CcEEEEECCEEEeeeecccCCceeeec-----ccCCCCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEECCC--C
Confidence 456799999999999999999999974 33321 1778899988888888774 3
Q ss_pred cEEechhHhhhcCCceeee
Q 040033 138 DVVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 138 dvILG~dwL~~~~~i~idw 156 (158)
-=|+|+|.|.+++. +++|
T Consensus 186 vniiGRn~LtqlG~-tl~f 203 (203)
T 3ka2_A 186 VNIIGRNLLTQIGX-TLNF 203 (203)
T ss_dssp SCEECHHHHGGGTC-EEEC
T ss_pred cCeechhhHHHhCC-eeeC
Confidence 44789999999997 6664
No 14
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=97.22 E-value=0.00089 Score=46.32 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=48.2
Q ss_pred EEEEEECCEeeEEEecCCCceeEECHHHHHHcCCeE---------------E------E-EE-ECCEEEEEEEEEecCCC
Q 040033 80 RINGRIGNISPIVLVDSGSTHNFISDTFAKKVKNFI---------------V------N-LI-LQGVYVIVDFNLRELEG 136 (158)
Q Consensus 80 ~~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~~~~---------------A------~-i~-i~g~~~~~~~~v~~~~~ 136 (158)
.+.++|+|+.+.+|+||||..+.|...-.-. +.+. + . ++ +.|+.-....+|.+-.+
T Consensus 11 ~vti~I~Gq~~eaLLDTGADdTVi~~~~lpg-~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i~tvlV~~ptP 89 (114)
T 3sqf_A 11 SLTLWLDDKMFTGLINTGADVTIIKLEDWPP-NWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPFVIPNLP 89 (114)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEEEGGGSCT-TSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEEECCEEETTCS
T ss_pred eEEEEECCEEEEEEEccCCCceEEecccCCC-CcccCcCceEEEeccceEEEEEeccceEEEecCCCEEEEEEEECCCCc
Confidence 3568999999999999999999998633211 1111 0 2 22 56777666666663233
Q ss_pred CcEEechhHhhhcCCceeee
Q 040033 137 YDVVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 137 ~dvILG~dwL~~~~~i~idw 156 (158)
.+ |+|+|.|.+.+. .++|
T Consensus 90 vN-IiGRn~LtqlG~-tLnf 107 (114)
T 3sqf_A 90 VN-LWGRDLLSQMKI-MMAS 107 (114)
T ss_dssp SC-EECHHHHTTSCC-----
T ss_pred cc-EEchhhHhhcCc-EEEC
Confidence 44 599999999996 6665
No 15
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=8e-05 Score=45.10 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=17.3
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||++||..++||..
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 6799999999999999954
No 16
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.02 E-value=0.00017 Score=42.48 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=15.6
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||.+++||.+
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 6788888888888888764
No 17
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.00 E-value=0.00022 Score=39.45 Aligned_cols=18 Identities=6% Similarity=0.063 Sum_probs=16.3
Q ss_pred ceeecCCCCCCCccCCcc
Q 040033 31 VCATIATKSFPRDIGERS 48 (158)
Q Consensus 31 ~Cf~Cg~~gH~~~~C~~~ 48 (158)
.||+|++.||.+++||.+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999975
No 18
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.94 E-value=0.0002 Score=40.07 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=16.1
Q ss_pred ceeecCCCCCCCccCCcc
Q 040033 31 VCATIATKSFPRDIGERS 48 (158)
Q Consensus 31 ~Cf~Cg~~gH~~~~C~~~ 48 (158)
.||+|++.||.+++||++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999864
No 19
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.92 E-value=0.00024 Score=39.73 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=16.8
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||+|++.||.+++||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 679999999999999985
No 20
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.87 E-value=0.00027 Score=43.50 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=15.2
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||.+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTT
T ss_pred CcccccCCCCeehhhCcCC
Confidence 6688888888888888764
No 21
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.86 E-value=0.00023 Score=39.32 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=16.6
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||+|++.||++++||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 679999999999999984
No 22
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.74 E-value=0.0004 Score=40.82 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=17.5
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||+.||++++||.+
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 6799999999999999975
No 23
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.74 E-value=0.00042 Score=42.36 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=17.6
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++|+.+
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCT
T ss_pred cceeECCCCCCccCcCCCc
Confidence 7899999999999999975
No 24
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.68 E-value=0.00043 Score=41.56 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=16.7
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||.+++||.+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSC
T ss_pred cceeeeCCCCcChhhcCCC
Confidence 7799999999999999864
No 25
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.64 E-value=0.00043 Score=42.54 Aligned_cols=19 Identities=5% Similarity=0.066 Sum_probs=17.7
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||++
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCC
T ss_pred CeeCCCCCCCCCcCCCcCC
Confidence 6799999999999999975
No 26
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.64 E-value=0.0003 Score=43.04 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
+.||+|++.||++++||..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3599999999999999975
No 27
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.00044 Score=45.26 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=17.8
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+||+.||++++||.+
T Consensus 47 ~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSC
T ss_pred CeecccCCCCcCcccCCcc
Confidence 6799999999999999986
No 28
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.61 E-value=0.00065 Score=42.04 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=13.0
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||+|++.||.+++|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 457777777777777774
No 29
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.51 E-value=0.0006 Score=40.89 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=17.6
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||.+
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 6799999999999999974
No 30
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.50 E-value=0.00046 Score=44.22 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=16.5
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||+|++.||.+++|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 789999999999999985
No 31
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.00092 Score=41.35 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=17.8
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||.+
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 7799999999999999976
No 32
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.09 E-value=0.0014 Score=41.85 Aligned_cols=19 Identities=16% Similarity=-0.013 Sum_probs=17.9
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||.+
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTG
T ss_pred CccCCcCCcCCccCcCcCC
Confidence 7899999999999999976
No 33
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0035 Score=43.57 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=17.6
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|++.||++++||+.
T Consensus 106 ~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 106 IYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCTTTTSSSCTTTTTSCCC
T ss_pred CCcCCCCCCCcCcccCcCC
Confidence 7899999999999999973
No 34
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=95.27 E-value=0.0043 Score=44.70 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=15.7
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||+|++.||.+++|+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CCCTTTCCSSCCGGGCCS
T ss_pred CcccEeCCccchhhhCCC
Confidence 469999999999999987
No 35
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=94.97 E-value=0.0059 Score=43.97 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=16.4
Q ss_pred eeecCCCCCCCccCCcc
Q 040033 32 CATIATKSFPRDIGERS 48 (158)
Q Consensus 32 Cf~Cg~~gH~~~~C~~~ 48 (158)
||+|++.||++++||++
T Consensus 122 C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 122 CHFCQSINHMVASCPLK 138 (148)
T ss_dssp CTTTCCSSCCGGGCTTT
T ss_pred ccccCCcCCEeccCcCC
Confidence 99999999999999986
No 36
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.0066 Score=39.60 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.9
Q ss_pred cceeecCCCCCCCccCCcc
Q 040033 30 KVCATIATKSFPRDIGERS 48 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~~ 48 (158)
..||+|+++||.+++||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 5699999999999999975
No 37
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=94.14 E-value=0.028 Score=39.35 Aligned_cols=70 Identities=20% Similarity=0.056 Sum_probs=42.0
Q ss_pred ECCEeeEEEecCCCceeEECHHHH-HHcC-C-----eE---------E------EEEECCE--EEEEEEEEecCC--CCc
Q 040033 85 IGNISPIVLVDSGSTHNFISDTFA-KKVK-N-----FI---------V------NLILQGV--YVIVDFNLRELE--GYD 138 (158)
Q Consensus 85 i~~~~v~aLiDSGat~sfI~~~~a-~~~~-~-----~~---------A------~i~i~g~--~~~~~~~v~~~~--~~d 138 (158)
|+|+...+|+||||..++|.+.-. .+-. . .+ . .+++-|+ .....+.|.|.. ..-
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~~~lP~~W~k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~~g~~~~tvlV~P~~~~tPv 106 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVRG 106 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEETTTSCTTSCEEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCEEESCSS
T ss_pred CCCEEEEEEecCCCCcEEEecccCCCcceeeccccceeeecCceEeeEEeCCceEEEEeCCCCcEEEEEEECcCCCCCce
Confidence 899999999999999999986432 1100 0 01 0 2333332 222334554520 123
Q ss_pred EEechhHhhhcCCcee
Q 040033 139 VVLGTQWLRTLEPILW 154 (158)
Q Consensus 139 vILG~dwL~~~~~i~i 154 (158)
=|+|+|.|.+.+....
T Consensus 107 nIiGRdlLtqlG~tL~ 122 (124)
T 2rsp_A 107 SILGRDCLQGLGLRLT 122 (124)
T ss_dssp EEECHHHHHHTTCEEE
T ss_pred eEECHhHHhhCCcEEe
Confidence 4899999999997443
No 38
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.019 Score=39.78 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=7.9
Q ss_pred ceeecCCC-CCCCccCCc
Q 040033 31 VCATIATK-SFPRDIGER 47 (158)
Q Consensus 31 ~Cf~Cg~~-gH~~~~C~~ 47 (158)
.||+|++. ||.++.||+
T Consensus 24 ~C~~Cg~~~gH~~~~C~~ 41 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPK 41 (124)
T ss_dssp CCTTTCCTTTCCTTTGGG
T ss_pred cCcCCCCcCCccCcccCC
Confidence 34444444 444444444
No 39
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=93.14 E-value=0.069 Score=36.78 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.0
Q ss_pred EEEEEEC-----CEeeEEEecCCCceeEECHHH
Q 040033 80 RINGRIG-----NISPIVLVDSGSTHNFISDTF 107 (158)
Q Consensus 80 ~~~~~i~-----~~~v~aLiDSGat~sfI~~~~ 107 (158)
.+.++|+ |+.+.||+||||..+.|.+.-
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~ 44 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIAL 44 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGG
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEeccc
Confidence 3577888 999999999999999998643
No 40
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=92.89 E-value=0.25 Score=35.40 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred EEEECCEEEEEEEEEecCC--CCcEEechhHhhhcCCceee
Q 040033 117 NLILQGVYVIVDFNLRELE--GYDVVLGTQWLRTLEPILWD 155 (158)
Q Consensus 117 ~i~i~g~~~~~~~~v~~~~--~~dvILG~dwL~~~~~i~id 155 (158)
.+.+++..+.+.|.+.+=+ .|.|+||..||+..+. .+|
T Consensus 97 ~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD 136 (146)
T 2pma_A 97 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVD 136 (146)
T ss_dssp EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEE
T ss_pred EEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EEC
Confidence 7788999999999999854 7999999999987653 454
No 41
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=91.36 E-value=1.4 Score=29.28 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=48.1
Q ss_pred EEEEECCEeeEEEecCCCceeEECHHHHHHcC-CeE-------------E---EEEECCEEEEEEEEEecCCCCcEEe--
Q 040033 81 INGRIGNISPIVLVDSGSTHNFISDTFAKKVK-NFI-------------V---NLILQGVYVIVDFNLRELEGYDVVL-- 141 (158)
Q Consensus 81 ~~~~i~~~~v~aLiDSGat~sfI~~~~a~~~~-~~~-------------A---~i~i~g~~~~~~~~v~~~~~~dvIL-- 141 (158)
+++.|.|..+++--||||+.+.|.+.|...-. +.. + .++++|+.....++--++ |.||
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E~PI~~~~I~TIHG~k~q~vYYl~fKv~GRKveaEVi~sp~---dYvli~ 86 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASPY---DYILLN 86 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTTCCCSEEEEEECSSCEEEEEEEEEEEEESSCEEEEEEEEESS---SSEEEC
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcccccccceEEEEecCceeceEEEEEEEEcCeEEEEEEecCcc---cEEEEc
Confidence 67889999999999999999999999876422 111 1 788899877776665553 3332
Q ss_pred --chhHhhhcC
Q 040033 142 --GTQWLRTLE 150 (158)
Q Consensus 142 --G~dwL~~~~ 150 (158)
-.+|+.+..
T Consensus 87 P~DiPW~~~~p 97 (107)
T 2jys_A 87 PSDVPWLMKKP 97 (107)
T ss_dssp TTTCHHHHSCC
T ss_pred CcCccccccCc
Confidence 248887644
No 42
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=89.21 E-value=0.58 Score=30.72 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.1
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 345677887 8999999999999998853
No 43
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=76.93 E-value=2.9 Score=32.78 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.9
Q ss_pred eEEEEEEECCEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIGNISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~~~~v~aLiDSGat~sfI~~ 105 (158)
.....+.|+.+++.++|||||+..+|..
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 43 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEec
Confidence 3556788889999999999999999854
No 44
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=76.60 E-value=3 Score=32.74 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.9
Q ss_pred eEEEEEEECCEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIGNISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+.+++.++|||||+..+|..
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~ 43 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEec
Confidence 3556788889999999999999999854
No 45
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=75.64 E-value=3 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.5
Q ss_pred EEEEEEECCEeeEEEecCCCceeEEC
Q 040033 79 LRINGRIGNISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 79 i~~~~~i~~~~v~aLiDSGat~sfI~ 104 (158)
..+.+.|+.+++.++|||||+..+|.
T Consensus 19 Y~~~i~iG~Q~~~v~~DTGSs~lWv~ 44 (330)
T 1yg9_A 19 YAGITKIGNQNFLTVFDSTSCNVVVA 44 (330)
T ss_dssp SEEEEEETTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEECCEEEEEEEeCCCcceEEe
Confidence 45677888999999999999999885
No 46
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=74.99 E-value=3.2 Score=32.56 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.4
Q ss_pred eEEEEEEECCEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIGNISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~~~~v~aLiDSGat~sfI~~ 105 (158)
.....+.|+.+++.+++||||+..+|..
T Consensus 15 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 42 (325)
T 1ibq_A 15 EYLTPVTVGKSTLHLDFDTGSADLWVFS 42 (325)
T ss_dssp CEEEEEEEBTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCEEEEEEEeCCCccceEee
Confidence 3456778889999999999999999853
No 47
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=74.48 E-value=3.9 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVP 42 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence 345677887 799999999999999984
No 48
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=71.91 E-value=4.5 Score=30.34 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=23.4
Q ss_pred EEECCEe-------eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS-------PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~-------v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|+++. ..++||||++..++...+++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 4567664 4799999999999999987764
No 49
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=71.75 E-value=4.3 Score=31.80 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.+++||||+..+|..
T Consensus 16 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 45 (325)
T 2apr_A 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIAS 45 (325)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCEEEcc
Confidence 355678888 8999999999999998854
No 50
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=70.48 E-value=5.2 Score=31.39 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEec
Confidence 345677888 8999999999999999864
No 51
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=70.25 E-value=4.8 Score=31.63 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.9
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGA 42 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECS
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecC
Confidence 456678888 8999999999999999864
No 52
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=70.22 E-value=5.3 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEec
Confidence 345677888 8999999999999999854
No 53
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=70.17 E-value=5.3 Score=31.44 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=22.9
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIP 41 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEe
Confidence 455677887 899999999999999984
No 54
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=69.44 E-value=5.6 Score=31.21 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=22.9
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.+++||||+..+|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVV 41 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEe
Confidence 455677887 899999999999999984
No 55
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=68.92 E-value=5.3 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 48 (361)
T 1mpp_A 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPH 48 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCCCeEECC
Confidence 455678888 8999999999999999854
No 56
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=68.83 E-value=5.9 Score=30.97 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.+++||||+..+|.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVP 42 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEe
Confidence 355677887 799999999999999985
No 57
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=68.03 E-value=6.2 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 41 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVV 41 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEe
Confidence 455677887 799999999999999985
No 58
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=67.92 E-value=4.9 Score=29.88 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=46.7
Q ss_pred EEECCEe------eEEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE------
Q 040033 83 GRIGNIS------PIVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD------ 128 (158)
Q Consensus 83 ~~i~~~~------v~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~------ 128 (158)
+.|+++. ..++||||++..++....++.+ +... -.+.++|..+.+.
T Consensus 108 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~ 187 (241)
T 1lya_B 108 VEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTL 187 (241)
T ss_dssp EEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEE
T ss_pred EEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeeccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEE
Confidence 4566654 5799999999999999877654 3211 0455566555431
Q ss_pred ---------EE--EecC-----CCCcEEechhHhhhcCCceeeec
Q 040033 129 ---------FN--LREL-----EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 ---------~~--v~~~-----~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .....|||..||+.+-- ..|+.
T Consensus 188 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~ 231 (241)
T 1lya_B 188 KVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYT-VFDRD 231 (241)
T ss_dssp EETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEE-EEETT
T ss_pred EccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEE-EEECC
Confidence 11 2222 23568999999998764 45653
No 59
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=67.88 E-value=6.1 Score=31.77 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|..
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 51 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEEC
Confidence 356678888 8999999999999999853
No 60
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=65.85 E-value=7.3 Score=30.46 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.+++||||+..+|.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 41 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVP 41 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEE
Confidence 455677887 799999999999999983
No 61
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=65.83 E-value=7.1 Score=31.13 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.9
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~ 42 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVA 42 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEe
Confidence 355677887 799999999999999985
No 62
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=65.61 E-value=6.9 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=22.3
Q ss_pred EEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 79 LRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 79 i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
..+.+.|+ .+++.+++||||+..+|..
T Consensus 13 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 41 (320)
T 4aa9_A 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPS 41 (320)
T ss_dssp CEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCCceEEcC
Confidence 44567777 6999999999999999954
No 63
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=65.53 E-value=7.5 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=22.5
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 43 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVP 43 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEc
Confidence 345677787 699999999999999985
No 64
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=64.75 E-value=7.9 Score=30.20 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.6
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.+++||||+..+|..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 42 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPS 42 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 345567777 6999999999999998853
No 65
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=64.48 E-value=8.1 Score=30.08 Aligned_cols=28 Identities=29% Similarity=0.244 Sum_probs=22.9
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.+++||||+..+|..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSS 42 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 345677787 6999999999999999864
No 66
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=64.41 E-value=8.1 Score=30.11 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=47.9
Q ss_pred EEECCEee------EEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE------
Q 040033 83 GRIGNISP------IVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD------ 128 (158)
Q Consensus 83 ~~i~~~~v------~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~------ 128 (158)
+.|+++.+ .++||||++..++....++.+ +... -.+.++|..+.+.
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~ 277 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTS 277 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcEEEECCCCccCceEEEEECCEEEEECHHHhcc
Confidence 46777654 799999999999998876654 3211 1566677766541
Q ss_pred -----EE--EecC-CCCcEEechhHhhhcCCceeeec
Q 040033 129 -----FN--LREL-EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 -----~~--v~~~-~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .....|||..||+.+-- ..|+.
T Consensus 278 ~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~~ 313 (323)
T 3cms_A 278 QDQGFCTSGFQSENHSQKWILGDVFIREYYS-VFDRA 313 (323)
T ss_dssp EETTEEEESEEEC---CCEEECHHHHTTEEE-EEETT
T ss_pred CCCCEEEEEEEeCCCCCcEEECHHHhhceEE-EEECC
Confidence 22 2233 24568999999998764 45653
No 67
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=64.36 E-value=7.8 Score=31.15 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.1
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 29 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~ 57 (402)
T 3vf3_A 29 GYYVEMTVGSPPQTLNILVDTGSSNFAVG 57 (402)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEc
Confidence 456678887 899999999999999984
No 68
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=64.20 E-value=7.7 Score=31.32 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=23.3
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.++|||||+..+|.-
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (403)
T 3aup_A 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNC 51 (403)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCSSEEEEC
T ss_pred eEEEEEECCCCCceeEEEEECCCCceeECC
Confidence 455677887 7999999999999999853
No 69
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=63.48 E-value=6.6 Score=31.75 Aligned_cols=19 Identities=5% Similarity=0.321 Sum_probs=16.7
Q ss_pred EEecCCCceeEECHHHHHH
Q 040033 92 VLVDSGSTHNFISDTFAKK 110 (158)
Q Consensus 92 aLiDSGat~sfI~~~~a~~ 110 (158)
++||||++..++...+++.
T Consensus 262 aiiDSGTt~~~lp~~~~~~ 280 (403)
T 3aup_A 262 TMISTSTPHMVLQQSVYQA 280 (403)
T ss_dssp EEECSSCSSEEECHHHHHH
T ss_pred EEEECCCccEEeCHHHHHH
Confidence 9999999999999886654
No 70
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.23 E-value=1.4 Score=27.85 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=14.9
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
..||.|++.||. ..|..
T Consensus 59 ~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 59 AFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CEETTTTEECCS-SCSSS
T ss_pred eeccccCccccC-Ccccc
Confidence 469999999999 99964
No 71
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=62.88 E-value=6.4 Score=31.57 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=21.8
Q ss_pred EEECCEeeE----------EEecCCCceeEECHHHHH
Q 040033 83 GRIGNISPI----------VLVDSGSTHNFISDTFAK 109 (158)
Q Consensus 83 ~~i~~~~v~----------aLiDSGat~sfI~~~~a~ 109 (158)
+.|+++.+. ++||||++..++.+..++
T Consensus 213 i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~ 249 (381)
T 1t6e_X 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR 249 (381)
T ss_dssp EEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHH
T ss_pred EEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHH
Confidence 468887652 899999999999987655
No 72
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=62.62 E-value=8.2 Score=30.28 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=23.5
Q ss_pred EEEECC-Eee----EEEecCCCceeEECHHHHHHc
Q 040033 82 NGRIGN-ISP----IVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 82 ~~~i~~-~~v----~aLiDSGat~sfI~~~~a~~~ 111 (158)
.+.+++ +.+ .++||||++..++....++.+
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l 228 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY 228 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence 345666 544 799999999999999887664
No 73
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=62.43 E-value=7.7 Score=30.68 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.0
Q ss_pred EEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 79 LRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 79 i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
..+.+.|+ .+++.++|||||+..+|..
T Consensus 25 Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~ 53 (351)
T 1tzs_A 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPS 53 (351)
T ss_dssp CCEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 34567777 6999999999999999853
No 74
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=62.04 E-value=9.5 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=22.6
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 47 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEc
Confidence 355677887 599999999999999995
No 75
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=61.27 E-value=9.4 Score=31.78 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
...+.+.|+ .+++.+++||||+..+|..
T Consensus 139 ~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~ 168 (453)
T 2bju_A 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPS 168 (453)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCeEEEEEEECCCcceEEec
Confidence 455677887 8999999999999999854
No 76
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=60.80 E-value=10 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
.....+.|+ .+++.+++||||+..+|..
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s 91 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPS 91 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEec
Confidence 455677887 6999999999999999853
No 77
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=60.41 E-value=10 Score=29.54 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.1
Q ss_pred EEECCEe-----eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS-----PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~-----v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.++++. ..++||||++..++....++.+
T Consensus 201 i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i 234 (342)
T 3pvk_A 201 VEVSGKTINTDNVDVLLDSGTTITYLQQDLADQI 234 (342)
T ss_dssp EEETTEEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecCCCceEEEeCCCCCeecCHHHHHHH
Confidence 3566654 5799999999999999877664
No 78
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=60.36 E-value=10 Score=31.23 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.2
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+ .+++.++|||||+..+|.
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~ 103 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVG 103 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEe
Confidence 456678888 799999999999999984
No 79
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=59.82 E-value=6.8 Score=31.27 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=22.3
Q ss_pred EEECCEee----------EEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNISP----------IVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~v----------~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|+++.+ .++||||++..++....+..+
T Consensus 204 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 242 (383)
T 2ewy_A 204 LEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAV 242 (383)
T ss_dssp EEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHH
T ss_pred EEECCEEccccccccCCccEEEEcCCccccCCHHHHHHH
Confidence 45676653 699999999999998876543
No 80
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=59.23 E-value=12 Score=29.25 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=47.2
Q ss_pred EEECCEe-----eEEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE-------
Q 040033 83 GRIGNIS-----PIVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD------- 128 (158)
Q Consensus 83 ~~i~~~~-----v~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~------- 128 (158)
+.|+++. ..++||||++..++....++.+ +... -.+.++|..+.+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~ 280 (329)
T 1dpj_A 201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE 280 (329)
T ss_dssp EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEE
T ss_pred EEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEec
Confidence 4566654 4699999999999999887654 2211 0556666655431
Q ss_pred ----EE--EecC-----CCCcEEechhHhhhcCCceeeec
Q 040033 129 ----FN--LREL-----EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 ----~~--v~~~-----~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .+...|||..||+.+-- ..|+.
T Consensus 281 ~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~ 319 (329)
T 1dpj_A 281 VSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYS-IYDLG 319 (329)
T ss_dssp ETTEEEECEEECCCCTTTCSEEEECHHHHTTEEE-EEETT
T ss_pred CCCEEEEEEEecccCCCCCCcEEEChHHhcceEE-EEECC
Confidence 11 2222 23468999999998764 45653
No 81
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=59.17 E-value=9 Score=30.01 Aligned_cols=74 Identities=8% Similarity=0.234 Sum_probs=47.3
Q ss_pred EEECCEe-----eEEEecCCCceeEECHHHHHHc----CC---------e-E-----------EEEEECCEEEEEE----
Q 040033 83 GRIGNIS-----PIVLVDSGSTHNFISDTFAKKV----KN---------F-I-----------VNLILQGVYVIVD---- 128 (158)
Q Consensus 83 ~~i~~~~-----v~aLiDSGat~sfI~~~~a~~~----~~---------~-~-----------A~i~i~g~~~~~~---- 128 (158)
+.|+++. ..++||||++..++....+..+ +. - . -.+.++|..+.+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y 281 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYY 281 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHH
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHh
Confidence 4566654 5799999999999999877654 21 1 1 1556677666542
Q ss_pred -------EE--EecC-CCCcEEechhHhhhcCCceeeec
Q 040033 129 -------FN--LREL-EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 -------~~--v~~~-~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .....|||..||+.+-- ..|+.
T Consensus 282 ~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~-vfD~~ 319 (330)
T 1yg9_A 282 IQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYS-EFNWE 319 (330)
T ss_dssp EEEETTEEEESEEEETTCSSEEECHHHHTTEEE-EEETT
T ss_pred cccCCCcEEEEEEeCCCCCeEEecHHHhhheEE-EEECC
Confidence 11 2222 23468999999998764 45653
No 82
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=58.58 E-value=12 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEECCEe----eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS----PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~----v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.++++. ..++||||++..++....++.+
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNI 234 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHH
Confidence 3566654 4689999999999999877654
No 83
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=58.38 E-value=10 Score=31.53 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=23.3
Q ss_pred EEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 79 LRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 79 i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
....+.|+ .+++.+++||||+..+|..
T Consensus 139 Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s 167 (451)
T 3qvc_A 139 SFGEAKLGDNGQKFNFLFHTASSNVWVPS 167 (451)
T ss_dssp EEEEEEETTTTEEEEEEEESSBCSEEEEB
T ss_pred EEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 56678888 7999999999999999864
No 84
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=57.89 E-value=16 Score=29.21 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=25.2
Q ss_pred EEEEEEECCE---eeEEEecCCCceeEECHHHHHHc
Q 040033 79 LRINGRIGNI---SPIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 79 i~~~~~i~~~---~v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.+.+.|+++ ...++||||++..++....+..+
T Consensus 243 v~l~i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 243 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEEEEEECCEEcccceEEecCCCccEEcCHHHHHHH
Confidence 3333677775 56899999999999999876653
No 85
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=57.88 E-value=12 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.1
Q ss_pred EEECCEe------eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS------PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~------v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|+++. ..++||||++..++....+..+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 244 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQL 244 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHH
Confidence 4577765 4799999999999999877654
No 86
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=56.55 E-value=11 Score=29.75 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.4
Q ss_pred EEECCEee------EEE-ecCCCceeEECHHHHHHc
Q 040033 83 GRIGNISP------IVL-VDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~v------~aL-iDSGat~sfI~~~~a~~~ 111 (158)
+.|+++.+ .++ ||||++..++...++..+
T Consensus 218 i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l 253 (361)
T 1mpp_A 218 VKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKV 253 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHH
T ss_pred EEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHH
Confidence 45676543 689 999999999998876654
No 87
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=56.33 E-value=12 Score=28.97 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=47.6
Q ss_pred EEECCEe------eEEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE------
Q 040033 83 GRIGNIS------PIVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD------ 128 (158)
Q Consensus 83 ~~i~~~~------v~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~------ 128 (158)
+.++++. ..++||||++..++....++.+ +... -.+.++|..+.+.
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~ 274 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTS 274 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhcc
Confidence 3566653 4799999999999998876654 3221 0566777766541
Q ss_pred -----EE--EecC-CCCcEEechhHhhhcCCceeeec
Q 040033 129 -----FN--LREL-EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 -----~~--v~~~-~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +... .+...|||..||+.+-- ..|+.
T Consensus 275 ~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~-vfD~~ 310 (320)
T 4aa9_A 275 KDQGFCTSGFQGDNNSELWILGDVFIREYYS-VFDRA 310 (320)
T ss_dssp EETTEEEESEEEETTCCCEEECHHHHTTEEE-EEETT
T ss_pred CCCCeEEEEEEcCCCCCcEEEChHHhcceEE-EEECC
Confidence 11 1221 22359999999998764 46654
No 88
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=56.25 E-value=8.4 Score=30.92 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred EEECCEee----------EEEecCCCceeEECHHHHHH
Q 040033 83 GRIGNISP----------IVLVDSGSTHNFISDTFAKK 110 (158)
Q Consensus 83 ~~i~~~~v----------~aLiDSGat~sfI~~~~a~~ 110 (158)
+.|+++.+ .++||||++..++....++.
T Consensus 215 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 252 (395)
T 2qp8_A 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 252 (395)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHH
T ss_pred EEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHH
Confidence 46777653 59999999999999876654
No 89
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=56.22 E-value=9.4 Score=29.70 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEECCEe-----eEEEecCCCceeEECHHHHHHc----CCe------E-----------EEEEECCEEEEEE--------
Q 040033 83 GRIGNIS-----PIVLVDSGSTHNFISDTFAKKV----KNF------I-----------VNLILQGVYVIVD-------- 128 (158)
Q Consensus 83 ~~i~~~~-----v~aLiDSGat~sfI~~~~a~~~----~~~------~-----------A~i~i~g~~~~~~-------- 128 (158)
+.|+++. ..++||||++..++....++.+ +.. . -.+.++|..+.+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~ 276 (324)
T 1am5_A 197 ITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD 276 (324)
T ss_dssp EEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES
T ss_pred EEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCcccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC
Confidence 4566655 5799999999999998766543 321 0 1566777766541
Q ss_pred ---EE--EecC-----CCCcEEechhHhhhcCCceeeec
Q 040033 129 ---FN--LREL-----EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 ---~~--v~~~-----~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .....|||..||+.+-- ..|+.
T Consensus 277 ~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~~ 314 (324)
T 1am5_A 277 QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT-IYDRT 314 (324)
T ss_dssp SSCEEECEEECCSCCSSSCEEEECHHHHHHEEE-EEETT
T ss_pred CCeEEEEEEECccCCCCCCcEEEChHHhccEEE-EEECC
Confidence 11 2222 13468999999998764 45653
No 90
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=55.90 E-value=14 Score=28.88 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=22.7
Q ss_pred EEECCEe----eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS----PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~----v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.++++. ..++||||++..++....++.+
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l 234 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKF 234 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHH
Confidence 3566654 4689999999999999877654
No 91
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=55.84 E-value=11 Score=29.47 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.0
Q ss_pred EECCEe----eEEEecCCCceeEECHHHHHHc
Q 040033 84 RIGNIS----PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 84 ~i~~~~----v~aLiDSGat~sfI~~~~a~~~ 111 (158)
.++++. ..++||||++..++...+++.+
T Consensus 205 ~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i 236 (339)
T 3fv3_A 205 NLKGSSFSFGDGALLDSGTTLTYFPSDFAAQL 236 (339)
T ss_dssp EESSCEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EECCEeecCCccEEEeCCCCCEecCHHHHHHH
Confidence 456554 3599999999999999877664
No 92
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=55.82 E-value=14 Score=29.59 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.4
Q ss_pred EEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 79 LRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 79 i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
....+.|+ .+++.+++||||+..+|..
T Consensus 58 Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s 86 (370)
T 3psg_A 58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPS 86 (370)
T ss_dssp EEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEcCCCCEEEEEEeCCCCccEEEC
Confidence 45677787 5999999999999999864
No 93
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=55.21 E-value=14 Score=28.70 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=47.0
Q ss_pred EEECCEe------eEEEecCCCceeEECHHHHHHc----CCeE-----------------EEEEECCEEEEEE---E---
Q 040033 83 GRIGNIS------PIVLVDSGSTHNFISDTFAKKV----KNFI-----------------VNLILQGVYVIVD---F--- 129 (158)
Q Consensus 83 ~~i~~~~------v~aLiDSGat~sfI~~~~a~~~----~~~~-----------------A~i~i~g~~~~~~---~--- 129 (158)
+.++++. ..++||||++..++....++.+ +... -.+.++|..+.+. +
T Consensus 208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~ 287 (341)
T 3k1w_A 208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQ 287 (341)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSSCEEEEGGGGGGCCCEEEEETTEEEEECHHHHBCC
T ss_pred EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCCCeEEeCCCCCcCCcEEEEECCEEEEECHHHheeE
Confidence 3466653 5799999999999999876654 2211 1566677666541 1
Q ss_pred ---------E--EecC-----CCCcEEechhHhhhcCCceeeec
Q 040033 130 ---------N--LREL-----EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 130 ---------~--v~~~-----~~~dvILG~dwL~~~~~i~idw~ 157 (158)
+ +... .....|||..||+.+-- ..|+.
T Consensus 288 ~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~~ 330 (341)
T 3k1w_A 288 ESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRR 330 (341)
T ss_dssp SCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETT
T ss_pred ccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEE-EEeCC
Confidence 1 1111 13468999999998764 46654
No 94
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=54.62 E-value=13 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred eEEEEEEEC--CEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIG--NISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~--~~~v~aLiDSGat~sfI~ 104 (158)
.....+.|+ .+++.++|||||+..+|.
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~ 81 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVP 81 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEe
Confidence 345677887 799999999999999984
No 95
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=53.70 E-value=8.5 Score=30.02 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=47.2
Q ss_pred EEECCEe-------eEEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE-----
Q 040033 83 GRIGNIS-------PIVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD----- 128 (158)
Q Consensus 83 ~~i~~~~-------v~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~----- 128 (158)
+.|+++. ..++||||++..++....+..+ +... -.+.++|..+.+.
T Consensus 198 i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~ 277 (329)
T 1htr_B 198 FLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYI 277 (329)
T ss_dssp EEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHE
T ss_pred EEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeecCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhc
Confidence 4566654 4699999999999998876654 2211 1566677766541
Q ss_pred ------EE--EecC-----CCC-cEEechhHhhhcCCceeeec
Q 040033 129 ------FN--LREL-----EGY-DVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 ------~~--v~~~-----~~~-dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .+. ..|||..||+.+-- ..|+.
T Consensus 278 ~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yv-vfD~~ 319 (329)
T 1htr_B 278 LSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYS-VYDLG 319 (329)
T ss_dssp EECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEE-EEETT
T ss_pred ccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEE-EEECC
Confidence 11 2221 122 58999999998763 45653
No 96
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=53.24 E-value=10 Score=30.49 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=21.9
Q ss_pred EEECCEee----------EEEecCCCceeEECHHHHHH
Q 040033 83 GRIGNISP----------IVLVDSGSTHNFISDTFAKK 110 (158)
Q Consensus 83 ~~i~~~~v----------~aLiDSGat~sfI~~~~a~~ 110 (158)
+.|+++.+ .++||||++..++....+..
T Consensus 222 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~ 259 (402)
T 3vf3_A 222 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259 (402)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHH
T ss_pred EEECCEEecccccccCCCeEEEECCCCcccCCHHHHHH
Confidence 46777654 59999999999998776554
No 97
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.33 E-value=3.1 Score=26.52 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=15.9
Q ss_pred cceeecCCCC---CCCccCCc
Q 040033 30 KVCATIATKS---FPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~g---H~~~~C~~ 47 (158)
..||.|+++| |..-.|..
T Consensus 52 ~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 52 TFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp EECSSSCSBCCTTTTTSCHHH
T ss_pred ccccccCCchhhcCCCCChHH
Confidence 4699999999 99999975
No 98
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=51.94 E-value=22 Score=29.40 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=50.6
Q ss_pred EEEEEEECC---EeeEEEecCCCceeEECHHHHHHcCCeE----------------------EEEEECCEEEEEEE----
Q 040033 79 LRINGRIGN---ISPIVLVDSGSTHNFISDTFAKKVKNFI----------------------VNLILQGVYVIVDF---- 129 (158)
Q Consensus 79 i~~~~~i~~---~~v~aLiDSGat~sfI~~~~a~~~~~~~----------------------A~i~i~g~~~~~~~---- 129 (158)
+.+.+.+++ ....++||||++..++....+..+--.. -.+.++|..+.+..
T Consensus 318 v~l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi 397 (451)
T 3qvc_A 318 VDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYL 397 (451)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHE
T ss_pred EEEEEEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhe
Confidence 334466776 4678999999999999999877652111 15566776665421
Q ss_pred -------------EEecCC--CCcEEechhHhhhcCCceeeec
Q 040033 130 -------------NLRELE--GYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 130 -------------~v~~~~--~~dvILG~dwL~~~~~i~idw~ 157 (158)
.+.+.. ....|||..||+.+-- ..|+.
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Yv-VfD~~ 439 (451)
T 3qvc_A 398 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFT-VYDYD 439 (451)
T ss_dssp EECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEE-EEETT
T ss_pred eecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEE-EEECC
Confidence 112222 3468999999998764 46654
No 99
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=51.62 E-value=6.7 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=21.8
Q ss_pred EEEEEEEC--CEeeEEEecCCCceeEECH
Q 040033 79 LRINGRIG--NISPIVLVDSGSTHNFISD 105 (158)
Q Consensus 79 i~~~~~i~--~~~v~aLiDSGat~sfI~~ 105 (158)
..+.+.|+ .+++.++|||||+..+|..
T Consensus 64 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 92 (375)
T 1miq_A 64 FYGEGEVGDNHQKFMLIFDTGSANLWVPS 92 (375)
T ss_dssp EECCCEETTTTEECCEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEcc
Confidence 34456777 7999999999999998853
No 100
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=50.65 E-value=13 Score=28.94 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=44.2
Q ss_pred EeeEEEecCCCceeEECHHHHHHc-----CCeE------------E-----EEEECCEEEEEE--------------EE-
Q 040033 88 ISPIVLVDSGSTHNFISDTFAKKV-----KNFI------------V-----NLILQGVYVIVD--------------FN- 130 (158)
Q Consensus 88 ~~v~aLiDSGat~sfI~~~~a~~~-----~~~~------------A-----~i~i~g~~~~~~--------------~~- 130 (158)
....++||||++..++....++.+ +... + .+.++|..+.+. ++
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~C~~ 285 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLG 285 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSCEEE
T ss_pred CCceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCeEEE
Confidence 456899999999999999987654 2211 0 556677666531 11
Q ss_pred -EecCC-CCcEEechhHhhhcCCceeeec
Q 040033 131 -LRELE-GYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 131 -v~~~~-~~dvILG~dwL~~~~~i~idw~ 157 (158)
+.+.. ....|||..||+.+-- ..|+.
T Consensus 286 ~i~~~~~~~~~ILG~~fl~~~y~-vfD~~ 313 (323)
T 1bxo_A 286 GIQSNSGIGFSIFGDIFLKSQYV-VFDSD 313 (323)
T ss_dssp SEEECTTCSSEEECHHHHTTEEE-EEETT
T ss_pred EEECCCCCCcEEEChHHHcCEEE-EEECC
Confidence 11221 2458999999998764 45553
No 101
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=50.24 E-value=12 Score=29.28 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=44.5
Q ss_pred EeeEEEecCCCceeEECHHHHHHcC-----CeE------------E-----EEEECCEEEEEE-------------EE--
Q 040033 88 ISPIVLVDSGSTHNFISDTFAKKVK-----NFI------------V-----NLILQGVYVIVD-------------FN-- 130 (158)
Q Consensus 88 ~~v~aLiDSGat~sfI~~~~a~~~~-----~~~------------A-----~i~i~g~~~~~~-------------~~-- 130 (158)
....++||||++..++....++.+. ... + .+.++|..+.+. ++
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~~~ 286 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGG 286 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEEEES
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeEEEE
Confidence 4568999999999999998876542 211 0 556677666531 11
Q ss_pred EecCC-CCcEEechhHhhhcCCceeeec
Q 040033 131 LRELE-GYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 131 v~~~~-~~dvILG~dwL~~~~~i~idw~ 157 (158)
+.+.. ....|||..||+.+-- ..|+.
T Consensus 287 i~~~~~~~~~IlG~~fl~~~y~-vfD~~ 313 (323)
T 1izd_A 287 IQSNSGIGFSIFGDVFLKSQYV-VFDAS 313 (323)
T ss_dssp EEECTTTSSEEECHHHHTTEEE-EEETT
T ss_pred EEcCCCCCcEEEChHHhcCEEE-EEECC
Confidence 12222 3468999999998764 45553
No 102
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=50.20 E-value=12 Score=30.83 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=22.6
Q ss_pred EEECCEee----------EEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNISP----------IVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~v----------~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|+++.+ .++||||++..++...++..+
T Consensus 268 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i 306 (455)
T 3lpj_A 268 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA 306 (455)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHH
T ss_pred EEECCEEccccccccCCCeEEEECCCcceeCCHHHHHHH
Confidence 46777754 499999999999998766553
No 103
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=49.51 E-value=24 Score=28.66 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=22.5
Q ss_pred ceEEEEEEECC--EeeEEEecCCCceeEEC
Q 040033 77 ETLRINGRIGN--ISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 77 ~~i~~~~~i~~--~~v~aLiDSGat~sfI~ 104 (158)
....+.+.|+. +++.+++||||+..++.
T Consensus 20 ~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 20 LQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred CeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 34566777775 89999999999988884
No 104
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=49.31 E-value=10 Score=26.82 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.9
Q ss_pred CEeeEEEecCCCceeEECHH
Q 040033 87 NISPIVLVDSGSTHNFISDT 106 (158)
Q Consensus 87 ~~~v~aLiDSGat~sfI~~~ 106 (158)
|..+.|-|||||..|-|+..
T Consensus 17 g~~~~AKiDTGA~TSSLhA~ 36 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAV 36 (146)
T ss_dssp TEEEEEEECTTCSSEEEECE
T ss_pred CCEEEEEecCCcCcceecce
Confidence 56689999999999988763
No 105
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=49.10 E-value=13 Score=30.22 Aligned_cols=18 Identities=0% Similarity=-0.058 Sum_probs=15.4
Q ss_pred EEEecCCCceeEECHHHH
Q 040033 91 IVLVDSGSTHNFISDTFA 108 (158)
Q Consensus 91 ~aLiDSGat~sfI~~~~a 108 (158)
.++||||.+..++...+.
T Consensus 267 ~aIiDSGTslt~lp~~~y 284 (413)
T 3vla_A 267 GTKISTINPYTVLETSIY 284 (413)
T ss_dssp CEEECSSSSSEEEEHHHH
T ss_pred CEEEECCCCcEEcCHHHH
Confidence 489999999999987754
No 106
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=46.42 E-value=17 Score=28.40 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred EEECCE-----eeEEEecCCCceeEECHHHHHHcC-----CeE------------E-----EEEECCEEEEEE-------
Q 040033 83 GRIGNI-----SPIVLVDSGSTHNFISDTFAKKVK-----NFI------------V-----NLILQGVYVIVD------- 128 (158)
Q Consensus 83 ~~i~~~-----~v~aLiDSGat~sfI~~~~a~~~~-----~~~------------A-----~i~i~g~~~~~~------- 128 (158)
+.|+++ ...++||||++..++...+++.+. ... + .+.++|..+.+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~~~ 280 (329)
T 1oew_A 201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFG 280 (329)
T ss_dssp EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEE
T ss_pred EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhCCCcEEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeee
Confidence 356553 457999999999999999876542 111 0 556677665431
Q ss_pred --------EE--EecCC-CCcEEechhHhhhcCCceeee
Q 040033 129 --------FN--LRELE-GYDVVLGTQWLRTLEPILWDF 156 (158)
Q Consensus 129 --------~~--v~~~~-~~dvILG~dwL~~~~~i~idw 156 (158)
++ +.+.. ....|||..||+.+-- ..|+
T Consensus 281 ~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~ 318 (329)
T 1oew_A 281 PISTGSSSCFGGIQSSAGIGINIFGDVALKAAFV-VFNG 318 (329)
T ss_dssp ESSTTCSEEEESEEESTTTSSEEECHHHHTTEEE-EEEC
T ss_pred ecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEE-EEEC
Confidence 11 11121 2468999999998764 4665
No 107
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=45.78 E-value=19 Score=29.08 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=47.3
Q ss_pred EEECCEe------eEEEecCCCceeEECHHHHHHc----CCe------E-----------EEEEECCEEEEEE-------
Q 040033 83 GRIGNIS------PIVLVDSGSTHNFISDTFAKKV----KNF------I-----------VNLILQGVYVIVD------- 128 (158)
Q Consensus 83 ~~i~~~~------v~aLiDSGat~sfI~~~~a~~~----~~~------~-----------A~i~i~g~~~~~~------- 128 (158)
+.|+++. ..++||||++..++....+..+ +.. . -.+.++|..|.+.
T Consensus 251 i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~ 330 (383)
T 2x0b_A 251 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQ 330 (383)
T ss_dssp EEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCC
T ss_pred EEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcccCCcEEEeccccccCceEEEEECCEEEEECHHHhEee
Confidence 4566654 5899999999999998876543 321 0 1566777766531
Q ss_pred --------EE--EecC-----CCCcEEechhHhhhcCCceeeec
Q 040033 129 --------FN--LREL-----EGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 129 --------~~--v~~~-----~~~dvILG~dwL~~~~~i~idw~ 157 (158)
++ +.+. .....|||-.||+++-- ..|+.
T Consensus 331 ~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~-vfD~~ 373 (383)
T 2x0b_A 331 ESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT-EFDRR 373 (383)
T ss_dssp CCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE-EEETT
T ss_pred ccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEE-EEECC
Confidence 11 1111 13468999999998764 46654
No 108
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=44.61 E-value=14 Score=28.85 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.8
Q ss_pred eeEEEecCCCceeEECHHHHHHc
Q 040033 89 SPIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 89 ~v~aLiDSGat~sfI~~~~a~~~ 111 (158)
...++||||++..++...+++.+
T Consensus 213 ~~~aiiDSGTt~~~lp~~~~~~i 235 (329)
T 3c9x_A 213 SIDGIADTGTTLLLLDDNVVDAY 235 (329)
T ss_dssp CEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEECCCCcEeCCHHHHHHH
Confidence 45799999999999999987654
No 109
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=44.52 E-value=16 Score=28.49 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=43.2
Q ss_pred eeEEEecCCCceeEECHHHHHHcC-----CeE-----------------EEEEECCEEEEEE---------------EE-
Q 040033 89 SPIVLVDSGSTHNFISDTFAKKVK-----NFI-----------------VNLILQGVYVIVD---------------FN- 130 (158)
Q Consensus 89 ~v~aLiDSGat~sfI~~~~a~~~~-----~~~-----------------A~i~i~g~~~~~~---------------~~- 130 (158)
...++||||++..++....++.+. ... -.+.++|..+.+. ++
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~ 287 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYG 287 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTSTTCBCCSSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEE
T ss_pred CceEEEeCCCCcEeCCHHHHHHHHHhCCCceEcCcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCCeEEE
Confidence 467999999999999998876542 110 0556677665531 11
Q ss_pred -EecCC-CCcEEechhHhhhcCCceeeec
Q 040033 131 -LRELE-GYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 131 -v~~~~-~~dvILG~dwL~~~~~i~idw~ 157 (158)
+.+.. ....|||..||+.+-- ..|+.
T Consensus 288 ~i~~~~~~~~~iLG~~fl~~~y~-vfD~~ 315 (325)
T 1ibq_A 288 GIQSNSGLGLSILGDVFLKSQYV-VFNSE 315 (325)
T ss_dssp SEEECTTTCSEEECHHHHTTEEE-EEETT
T ss_pred EEEcCCCCCceEEChHHhcCEEE-EEECC
Confidence 11221 2358999999998764 45553
No 110
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=41.02 E-value=30 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.0
Q ss_pred EEECCEe-------eEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGNIS-------PIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~~~-------v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|+++. ..++||||++..++....+..+
T Consensus 240 i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i 275 (478)
T 1qdm_A 240 VLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEI 275 (478)
T ss_dssp EEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHH
T ss_pred EEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHH
Confidence 4566654 4799999999999999877654
No 111
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=37.54 E-value=25 Score=27.26 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=43.8
Q ss_pred eeEEEecCCCceeEECHH----HHHHcCCeE-----------------EEEEECCEEEEEE------------EE--Eec
Q 040033 89 SPIVLVDSGSTHNFISDT----FAKKVKNFI-----------------VNLILQGVYVIVD------------FN--LRE 133 (158)
Q Consensus 89 ~v~aLiDSGat~sfI~~~----~a~~~~~~~-----------------A~i~i~g~~~~~~------------~~--v~~ 133 (158)
...++||||++..++... +++.+.-.. -.+.++|..+.+. ++ +..
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~C~~~i~~ 291 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQGQCIAGFGY 291 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEECSCGGGCCCEEEEETTEEEEECGGGGEEEEETTEEEESEEE
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHEEEcCCCCeEEEEEEc
Confidence 457999999999999999 777665432 1555666554421 11 111
Q ss_pred CCCCcEEechhHhhhcCCceeeec
Q 040033 134 LEGYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 134 ~~~~dvILG~dwL~~~~~i~idw~ 157 (158)
...-..|||..||+.+-- ..|+.
T Consensus 292 ~~~~~~iLG~~fl~~~y~-vfD~~ 314 (325)
T 2apr_A 292 GNWGFAIIGDTFLKNNYV-VFNQG 314 (325)
T ss_dssp ESSSSEEECHHHHTTEEE-EEETT
T ss_pred CCCCCEEECHHHhcceEE-EEECC
Confidence 123458999999998764 45653
No 112
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=33.69 E-value=33 Score=28.43 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=23.4
Q ss_pred EEECC---EeeEEEecCCCceeEECHHHHHHc
Q 040033 83 GRIGN---ISPIVLVDSGSTHNFISDTFAKKV 111 (158)
Q Consensus 83 ~~i~~---~~v~aLiDSGat~sfI~~~~a~~~ 111 (158)
+.|++ ....++||||++..++....+..+
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l 354 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKM 354 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHH
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHH
Confidence 55666 236799999999999999988765
No 113
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=33.32 E-value=26 Score=27.97 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred eeEEEecCCCceeEECHHHHHHc----CCeE------------------EEEEECCEEEEEE---------------EEE
Q 040033 89 SPIVLVDSGSTHNFISDTFAKKV----KNFI------------------VNLILQGVYVIVD---------------FNL 131 (158)
Q Consensus 89 ~v~aLiDSGat~sfI~~~~a~~~----~~~~------------------A~i~i~g~~~~~~---------------~~v 131 (158)
...++||||++..++....+..+ +... -.+.++|..+.+. |.-
T Consensus 253 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~~~~~~ 332 (370)
T 3psg_A 253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEG 332 (370)
T ss_dssp CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEESEEE
T ss_pred CceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEEEEEe
Confidence 35799999999999998876654 3321 0567778776642 111
Q ss_pred ecCC---CCcEEechhHhhhcCCceeeec
Q 040033 132 RELE---GYDVVLGTQWLRTLEPILWDFA 157 (158)
Q Consensus 132 ~~~~---~~dvILG~dwL~~~~~i~idw~ 157 (158)
.+.. +.-.|||..||+.+-- ..|+.
T Consensus 333 ~~~~~~~~~~~ILG~~Fl~~~y~-vfD~~ 360 (370)
T 3psg_A 333 MDVPTSSGELWILGDVFIRQYYT-VFDRA 360 (370)
T ss_dssp ECCCTTSCCEEEECHHHHTTEEE-EEETT
T ss_pred CCCCCCCCCcEEeChHHhcceEE-EEECC
Confidence 1111 1238999999998764 46654
No 114
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=28.43 E-value=11 Score=18.75 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=15.4
Q ss_pred cceeecCCCCCCCccCCc
Q 040033 30 KVCATIATKSFPRDIGER 47 (158)
Q Consensus 30 ~~Cf~Cg~~gH~~~~C~~ 47 (158)
.-|-.|...||-...|..
T Consensus 4 pYCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCND 21 (26)
T ss_dssp CEETTTTEESSCGGGCCT
T ss_pred ccchHHHHhCcccccCCc
Confidence 358899999999999975
No 115
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=24.97 E-value=61 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.1
Q ss_pred eEEEEEEECCEeeEEEecCCCceeEEC
Q 040033 78 TLRINGRIGNISPIVLVDSGSTHNFIS 104 (158)
Q Consensus 78 ~i~~~~~i~~~~v~aLiDSGat~sfI~ 104 (158)
...+.+.|+. + ++|||||+..++.
T Consensus 15 ~Y~~~i~iGt-P--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 15 LYTIPFHDGA-S--LVLDVAGPLVWST 38 (381)
T ss_dssp CEEEEEETTE-E--EEEETTCCCEEEC
T ss_pred EEEEEEeCCC-E--EEEECCCCceEEe
Confidence 4455666654 4 8999999999986
No 116
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.06 E-value=17 Score=18.69 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=7.1
Q ss_pred cceeecCCC
Q 040033 30 KVCATIATK 38 (158)
Q Consensus 30 ~~Cf~Cg~~ 38 (158)
..||+|+.+
T Consensus 20 ~~C~~C~~p 28 (32)
T 2lk0_A 20 LKCFRCGAD 28 (32)
T ss_dssp CBCTTTCCB
T ss_pred ceecCCCCc
Confidence 569999865
No 117
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=23.82 E-value=18 Score=21.29 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=7.0
Q ss_pred cceeecCCC
Q 040033 30 KVCATIATK 38 (158)
Q Consensus 30 ~~Cf~Cg~~ 38 (158)
..||.||+.
T Consensus 4 VRCFTCGkv 12 (55)
T 1ef4_A 4 VRCLSCGKP 12 (55)
T ss_dssp SSCSCTTSC
T ss_pred eecCCCCCC
Confidence 359999975
No 118
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=20.58 E-value=18 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=7.0
Q ss_pred cceeecCCC
Q 040033 30 KVCATIATK 38 (158)
Q Consensus 30 ~~Cf~Cg~~ 38 (158)
..||.||+.
T Consensus 5 VRCFTCGkv 13 (66)
T 4ayb_N 5 IRCFTCGSL 13 (66)
T ss_dssp SBCTTTCCB
T ss_pred cccCCCcHh
Confidence 359999974
Done!