Query 040035
Match_columns 228
No_of_seqs 127 out of 624
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 5.3E-65 1.8E-69 502.2 16.4 220 1-228 151-381 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 3.6E-54 1.2E-58 418.7 17.8 205 1-228 88-307 (631)
3 2sqc_A Squalene-hopene cyclase 70.9 3.4 0.00012 39.6 4.2 50 163-214 60-119 (631)
4 1w6k_A Lanosterol synthase; cy 62.9 6.2 0.00021 38.6 4.3 48 165-214 125-182 (732)
5 1gxm_A Pectate lyase; mechanis 47.8 20 0.00069 31.9 4.7 19 161-179 168-186 (332)
6 3sdr_A Alpha-bisabolene syntha 26.5 24 0.00082 35.1 1.7 53 165-219 104-166 (817)
7 1r76_A Pectate lyase; A-helica 24.6 39 0.0013 30.9 2.7 29 158-188 171-199 (408)
8 1qqf_A Protein (complement C3D 23.6 71 0.0024 26.5 4.0 25 159-185 86-111 (277)
9 2wy7_A Complement C3D fragment 22.7 74 0.0025 27.0 4.0 25 159-185 102-127 (310)
10 2bb6_A TCII, TC II, transcobal 21.7 68 0.0023 29.3 3.7 55 158-214 202-261 (414)
11 2h6f_B Protein farnesyltransfe 20.8 46 0.0016 30.5 2.3 52 161-214 120-183 (437)
12 3p5p_A Taxadiene synthase; cla 20.6 51 0.0017 32.5 2.7 50 165-216 56-115 (764)
13 2pmv_A Gastric intrinsic facto 20.2 46 0.0016 30.4 2.1 52 161-214 182-237 (399)
14 4acq_A Alpha-2-macroglobulin; 20.2 83 0.0028 33.2 4.4 52 161-214 1037-1107(1451)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=5.3e-65 Score=502.17 Aligned_cols=220 Identities=37% Similarity=0.779 Sum_probs=211.1
Q ss_pred CchhhHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhcCChhh----------hhcccccCCCCCCCCccccCCCCCCCCCC
Q 040035 1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMG----------ILGVYDWSGCNPMPPEFWKIPSFLPISPG 70 (228)
Q Consensus 1 ~~~Tv~aY~ALrllG~~~d~~~~p~m~rAR~~Il~~GGa~~----------llG~y~W~~v~~lPpEl~LLP~w~P~~~~ 70 (228)
||+||+||+|||++|+++|+ |+|+|||+||+++|||++ +||+|+|+++|+|||||||||+||||||+
T Consensus 151 ~~~T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~p~~~~ 227 (732)
T 1w6k_A 151 VFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPS 227 (732)
T ss_dssp HHHHHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGG
T ss_pred HHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcCCCCHH
Confidence 68999999999999999999 999999999999999999 88999999999999999999999999999
Q ss_pred CcchhchhhhhhhhhhhcCcccccCCchhHhHHHhhccCCCCCCCccccccccCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 040035 71 KLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPI 150 (228)
Q Consensus 71 ~~~~~~R~v~~Pm~~l~~~r~~~~~~~~~~~lr~EL~~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~ 150 (228)
+||||||+||+||+|+++|||+++.+|.+.+||+|||++||++|+|.++|+.|+++|+|+|++++++.++..| +.+|++
T Consensus 228 ~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~ 306 (732)
T 1w6k_A 228 TLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHH 306 (732)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhc
Confidence 9999999999999999999999998999999999999999999999999999999999999999998888877 677765
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhhhhhcc-CCCCHHHHHHHhhhccceEecCCceeeeeC
Q 040035 151 LNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCWIE-DPNSDYFKKHLPRIGEYLWVGEDGMKVQVR 228 (228)
Q Consensus 151 ~~~~~~~~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~~~nml~~~~~-~p~sp~~~~~~~~l~~~lw~~~dG~~~q~~ 228 (228)
+ ++++|++|++++++||++|||+|||+|++|+++++||++||.+ +||||.|++|++++++|+|+.+|||++|+|
T Consensus 307 ~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~ 381 (732)
T 1w6k_A 307 H----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGT 381 (732)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSS
T ss_pred C----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCC
Confidence 3 5789999999999999999999999999999999999999974 499999999999999999999999999987
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=3.6e-54 Score=418.70 Aligned_cols=205 Identities=16% Similarity=0.216 Sum_probs=180.8
Q ss_pred CchhhHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhcCChhh----------hhcccccCCCCCCCCccccCCCCCCCCCC
Q 040035 1 MFGTVFNYICMRLLGEGPDGGENNACARARKWILDRGGAMG----------ILGVYDWSGCNPMPPEFWKIPSFLPISPG 70 (228)
Q Consensus 1 ~~~Tv~aY~ALrllG~~~d~~~~p~m~rAR~~Il~~GGa~~----------llG~y~W~~v~~lPpEl~LLP~w~P~~~~ 70 (228)
||+||+||+||||+|+++|| |+|+|||+||+++||+++ +||+|+|+++|+||||+||||+|+||||+
T Consensus 88 ~~~t~~~y~aLrllg~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~G~~~w~~~~~~p~e~~llp~~~p~~~~ 164 (631)
T 2sqc_A 88 LDTTIEAYVALKYIGMSRDE---EPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIY 164 (631)
T ss_dssp HHHHHHHHHHHHHHTCCTTS---HHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGG
T ss_pred hHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCcccCCHHHHHHHHHcCCCCcccCCCCCHHHHHcccccccCHh
Confidence 58999999999999999999 999999999999999998 88999999999999999999999999999
Q ss_pred CcchhchhhhhhhhhhhcCcccccCCchhHhHHHhhccCCCCCCCccccccccCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 040035 71 KLNCYCRVTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYTDIDWSKMRHFCAKEDIFFPHTTVQNLLWDTLYNVVEPI 150 (228)
Q Consensus 71 ~~~~~~R~v~~Pm~~l~~~r~~~~~~~~~~~lr~EL~~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~ 150 (228)
+||||+|+|++||+||++|||++++|+.+ +| +|||++||++|+|.. +.|.+.+...+...+ +.++
T Consensus 165 ~~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~l-~~~~-- 229 (631)
T 2sqc_A 165 EFGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDALDRAL-HGYQ-- 229 (631)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHHHHHH-HHHH--
T ss_pred HhHHHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHHHHHH-HHhh--
Confidence 99999999999999999999999987775 78 999999999999853 355565444443333 3334
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHhcCCCccccccccc-hhhhhhhh---ccCCCCHHHHHHHhhhccceEecCC-ceee
Q 040035 151 LNRWPLNKLREKSLEIAMNHIHYEDEASRYMTIECVEK-PLNMLCCW---IEDPNSDYFKKHLPRIGEYLWVGED-GMKV 225 (228)
Q Consensus 151 ~~~~~~~~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~-~~nml~~~---~~~p~sp~~~~~~~~l~~~lw~~~d-G~~~ 225 (228)
++++++||++|++++++||++|+|+|| ++|+|.+ ++|++.++ +++ |||.+++|++++++|+|+++| ||++
T Consensus 230 --~~~~~~lr~~a~~~~~~~i~~~~~~~g--~~~~i~p~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~ 304 (631)
T 2sqc_A 230 --KLSVHPFRRAAEIRALDWLLERQAGDG--SWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVELDYGGWMF 304 (631)
T ss_dssp --HSSCCTTHHHHHHHHHHHHHHHCCTTS--SSTTSHHHHHHHHHHHHHTTCT-TSHHHHHHHHGGGGGEEECTTSCEEE
T ss_pred --cCCcHHHHHHHHHHHHHHHHHHHcCCC--CcccccHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhceEEcCCCceee
Confidence 346778999999999999999999999 7887776 56877766 444 999999999999999999999 9999
Q ss_pred eeC
Q 040035 226 QVR 228 (228)
Q Consensus 226 q~~ 228 (228)
|+|
T Consensus 305 ~~~ 307 (631)
T 2sqc_A 305 QAS 307 (631)
T ss_dssp CSS
T ss_pred CCC
Confidence 987
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=70.90 E-value=3.4 Score=39.56 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCcccccc-------ccchhhhhh---hhccCCCCHHHHHHHhhhcc
Q 040035 163 SLEIAMNHIHYEDEASRYMTIEC-------VEKPLNMLC---CWIEDPNSDYFKKHLPRIGE 214 (228)
Q Consensus 163 Al~~a~~~i~~~~e~t~y~~lg~-------i~~~~nml~---~~~~~p~sp~~~~~~~~l~~ 214 (228)
-.++..+||..+|+.|| +||= ++.+....+ .+|+++|+|.++|+.+.|.+
T Consensus 60 ~~~~~~~yl~~~Q~~dG--gW~~~~~~~~~~~~t~~~y~aLrllg~~~~~~~~~~ar~~i~~ 119 (631)
T 2sqc_A 60 RMEKIRRYLLHEQREDG--TWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQS 119 (631)
T ss_dssp HHHHHHHHHHHHSCTTS--CCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--CccCCCCCCcchHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 34566799999999999 7764 333443333 33788999999999998876
No 4
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=62.87 E-value=6.2 Score=38.64 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCcccccccc-------chh-h--hhhhhccCCCCHHHHHHHhhhcc
Q 040035 165 EIAMNHIHYEDEASRYMTIECVE-------KPL-N--MLCCWIEDPNSDYFKKHLPRIGE 214 (228)
Q Consensus 165 ~~a~~~i~~~~e~t~y~~lg~i~-------~~~-n--ml~~~~~~p~sp~~~~~~~~l~~ 214 (228)
++..+||..+|+.|| |||=.. .+. | +|-.+|.++|+|+++|+.+-|.+
T Consensus 125 ~~~~~yl~~~Q~~DG--gWgl~~~~~s~~~~T~~~Y~aLrl~G~~~~~~~~~~ar~~i~~ 182 (732)
T 1w6k_A 125 EEIVRYLRSVQLPDG--GWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHK 182 (732)
T ss_dssp HHHHHHHHHHSCTTS--CBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CccCCcCCCccHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 456689999999999 887332 222 3 23333788999999999986655
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=47.76 E-value=20 Score=31.93 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 040035 161 EKSLEIAMNHIHYEDEASR 179 (228)
Q Consensus 161 ~~Al~~a~~~i~~~~e~t~ 179 (228)
+.|+++++++|+.+||.+|
T Consensus 168 ~~av~Rgid~Llk~Qe~dg 186 (332)
T 1gxm_A 168 KTAVTKGTDYILKAQWKQN 186 (332)
T ss_dssp HHHHHHHHHHHHHHSCEET
T ss_pred HHHHHHHHHHHHHhhCccC
Confidence 4699999999999999988
No 6
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=26.48 E-value=24 Score=35.13 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCCcccccccc------chhhhhhhhc----cCCCCHHHHHHHhhhccceEec
Q 040035 165 EIAMNHIHYEDEASRYMTIECVE------KPLNMLCCWI----EDPNSDYFKKHLPRIGEYLWVG 219 (228)
Q Consensus 165 ~~a~~~i~~~~e~t~y~~lg~i~------~~~nml~~~~----~~p~sp~~~~~~~~l~~~lw~~ 219 (228)
-.|.+||+..|..|| +||.-. ..+|.++|+. ....+..+.|+++-|++-++.-
T Consensus 104 p~~~~wil~nQ~~DG--sWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~~~ 166 (817)
T 3sdr_A 104 PQTVDWILKNQLKDG--SWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSNLELV 166 (817)
T ss_dssp HHHHHHHHHCCCTTS--CCSCTTCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHccCCCC--CCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 468899999999999 898632 1346665552 2344568999998888766543
No 7
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=24.63 E-value=39 Score=30.89 Aligned_cols=29 Identities=3% Similarity=-0.205 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccc
Q 040035 158 KLREKSLEIAMNHIHYEDEASRYMTIECVEK 188 (228)
Q Consensus 158 ~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~ 188 (228)
.--+.|++++++||+.-|-.+| ||+...+
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~~nG--GWpqFdp 199 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQFPNG--GWPQVWP 199 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS--CCBSBSS
T ss_pred HHHHHHHHHHHHHHHHccCCCC--CCcCcCc
Confidence 3567899999999999998888 8876665
No 8
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=23.62 E-value=71 Score=26.53 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCcccccc
Q 040035 159 LREKSLEIAMNHIHY-EDEASRYMTIEC 185 (228)
Q Consensus 159 lR~~Al~~a~~~i~~-~~e~t~y~~lg~ 185 (228)
+-..+++++.+|+.. +++.+| +|..
T Consensus 86 v~~~~i~~a~~~L~~~~Q~~dG--~f~~ 111 (277)
T 1qqf_A 86 IDSQVLCGAVKWLILEKQKPDG--VFQE 111 (277)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTS--CBCC
T ss_pred CCHHHHHHHHHHHHHhccCCCC--CccC
Confidence 445788999999995 998888 5543
No 9
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=22.67 E-value=74 Score=26.98 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCcccccc
Q 040035 159 LREKSLEIAMNHIHY-EDEASRYMTIEC 185 (228)
Q Consensus 159 lR~~Al~~a~~~i~~-~~e~t~y~~lg~ 185 (228)
+-+.+++++.+|+.. +++.+| +|..
T Consensus 102 v~~~~i~~a~~~L~~~~Q~~dG--sf~~ 127 (310)
T 2wy7_A 102 IDSQVLCGAVKWLILEKQKPDG--VFQE 127 (310)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTS--CBCC
T ss_pred CCHHHHHHHHHHHHHhhcCCCC--cccc
Confidence 345788999999995 998888 5543
No 10
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=21.72 E-value=68 Score=29.33 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccchhhhhhhh---ccCCCC--HHHHHHHhhhcc
Q 040035 158 KLREKSLEIAMNHIHYEDEASRYMTIECVEKPLNMLCCW---IEDPNS--DYFKKHLPRIGE 214 (228)
Q Consensus 158 ~lR~~Al~~a~~~i~~~~e~t~y~~lg~i~~~~nml~~~---~~~p~s--p~~~~~~~~l~~ 214 (228)
..=++|++.+.++|..++..+| .||-++++-..+-++ +..++. -...++++.+..
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG--~FGN~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~ 261 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEG--YFGNVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA 261 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTS--CBSSTTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CccchhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH
Confidence 3455677777799999999999 788887754444444 333322 246666666554
No 11
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=20.76 E-value=46 Score=30.49 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccccc-------c---hhhhhhhhccC--CCCHHHHHHHhhhcc
Q 040035 161 EKSLEIAMNHIHYEDEASRYMTIECVE-------K---PLNMLCCWIED--PNSDYFKKHLPRIGE 214 (228)
Q Consensus 161 ~~Al~~a~~~i~~~~e~t~y~~lg~i~-------~---~~nml~~~~~~--p~sp~~~~~~~~l~~ 214 (228)
...++++.+||...|+.+| +|++.- . ++.+|..++.. .+.+.++++++=|.+
T Consensus 120 ~~~~~r~v~~l~s~Q~~dG--Gf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s 183 (437)
T 2h6f_B 120 QIVATDVCQFLELCQSPEG--GFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYS 183 (437)
T ss_dssp HHHHHHHHHHHHHHBCTTS--SBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCC--CcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHH
Confidence 3466789999999999998 888742 1 34455555532 233446666654443
No 12
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=20.60 E-value=51 Score=32.53 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCcccccccc------chhhhhhhhc----cCCCCHHHHHHHhhhccce
Q 040035 165 EIAMNHIHYEDEASRYMTIECVE------KPLNMLCCWI----EDPNSDYFKKHLPRIGEYL 216 (228)
Q Consensus 165 ~~a~~~i~~~~e~t~y~~lg~i~------~~~nml~~~~----~~p~sp~~~~~~~~l~~~l 216 (228)
-.|.+||+..|..|| +||.-. ..+|.++|.. ....+..+.|+++-|++-+
T Consensus 56 p~~~~wil~nQ~~DG--sWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 56 PQALNWVFNNQLQDG--SWGIESHFSLCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHCCCTTS--CCSCTTSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCC--CCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 468899999999999 898732 1346555552 2234468999988777655
No 13
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=20.23 E-value=46 Score=30.36 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccch---hhhhhhhccCCCCH-HHHHHHhhhcc
Q 040035 161 EKSLEIAMNHIHYEDEASRYMTIECVEKP---LNMLCCWIEDPNSD-YFKKHLPRIGE 214 (228)
Q Consensus 161 ~~Al~~a~~~i~~~~e~t~y~~lg~i~~~---~nml~~~~~~p~sp-~~~~~~~~l~~ 214 (228)
..|++++.++|...+..+| .||-++++ +-+|.+.+..+..+ ...++++.+..
T Consensus 182 ~~ai~~~~~~l~~~q~~dG--~fGn~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~ 237 (399)
T 2pmv_A 182 GQVLKDIVEKISMKIKDNG--IIGDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN 237 (399)
T ss_dssp HHHHHHHHHHHTTSBCTTS--CBSSHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCC--cccccccHHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 6889999999999999999 78888884 44555555545555 56667666554
No 14
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=20.17 E-value=83 Score=33.16 Aligned_cols=52 Identities=6% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccc----------------hhhhhhhh---ccCCCCHHHHHHHhhhcc
Q 040035 161 EKSLEIAMNHIHYEDEASRYMTIECVEK----------------PLNMLCCW---IEDPNSDYFKKHLPRIGE 214 (228)
Q Consensus 161 ~~Al~~a~~~i~~~~e~t~y~~lg~i~~----------------~~nml~~~---~~~p~sp~~~~~~~~l~~ 214 (228)
...+++|.+|+..+++.+| +|....+ +-..++++ +....++.++++++-|++
T Consensus 1037 ~~~l~~a~~wL~~~Q~~dG--~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~ 1107 (1451)
T 4acq_A 1037 EAHITQALIWLSQRQKDNG--CFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLES 1107 (1451)
T ss_dssp THHHHHHHHHHHHTEETTT--EECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCC--cccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Done!