BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040037
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WMI|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen
Length = 606
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 76 KPKILESMLEVLIELTTCNQGNYLRILRFLANHNKDIKKVTLKNAPRYNILIA-PSIQKD 134
K K+LE +V I N+GN +F N N D ++ L RYN++ A P + K
Sbjct: 348 KSKVLEDT-KVFIHGDYSNKGN----GKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKT 402
Query: 135 IVRACSIETTNTIIKDISDALFA 157
S+ ++ IK+I+ F+
Sbjct: 403 DKLKESVSSSRIQIKEITSPEFS 425
>pdb|2WMK|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen.
pdb|2WMK|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The A-Lewisy
Pentasaccharide Blood Group Antigen
Length = 606
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 76 KPKILESMLEVLIELTTCNQGNYLRILRFLANHNKDIKKVTLKNAPRYNILIA-PSIQKD 134
K K+LE +V I N+GN +F N N D ++ L RYN++ A P + K
Sbjct: 348 KEKVLEDT-KVFIHGDYSNKGN----GKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKT 402
Query: 135 IVRACSIETTNTIIKDISDALFA 157
S+ ++ IK+I+ F+
Sbjct: 403 DKLKESVSSSRIQIKEITSPEFS 425
>pdb|2WMI|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 In Complex With The A-Trisaccharide Blood Group
Antigen.
pdb|2WMJ|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen.
pdb|2WMJ|B Chain B, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae
Sp3-Bs71 (Sp3gh98) In Complex With The B-Trisaccharide
Blood Group Antigen
Length = 606
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 76 KPKILESMLEVLIELTTCNQGNYLRILRFLANHNKDIKKVTLKNAPRYNILIA-PSIQKD 134
K K+LE +V I N+GN +F N N D ++ L RYN++ A P + K
Sbjct: 348 KEKVLEDT-KVFIHGDYSNKGN----GKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKT 402
Query: 135 IVRACSIETTNTIIKDISDALFA 157
S+ ++ IK+I+ F+
Sbjct: 403 DKLKESVSSSRIQIKEITSPEFS 425
>pdb|2V1O|A Chain A, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|B Chain B, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|C Chain C, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|D Chain D, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|E Chain E, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|F Chain F, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
Length = 151
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 145 NTIIKDISDALFAILIDKSCDASMKEQVVVVLQYVDRNRFVIERFLGS-KHVTSTITISL 203
TI+K I +A AI+ + C++ E+ V L V+R F+ +G HV++ IT +
Sbjct: 20 GTILKMIEEA-GAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTS 78
Query: 204 KEALD 208
K +++
Sbjct: 79 KHSVE 83
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 161 DKSCDASMKEQVVVVLQYVDRNRFVIERFL--GSKHVTSTITISLKEA 206
DK CDA + +L R+R +E + G HV +T S KEA
Sbjct: 24 DKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,770,640
Number of Sequences: 62578
Number of extensions: 248021
Number of successful extensions: 610
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 5
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)