BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040037
         (253 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
          Length = 1142

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 6/147 (4%)

Query: 90  LTTCNQGNYLRILRFLANHNKDIKKVTLKNAPRYNILIAPSIQKDIVRACSIETTNTIIK 149
           +++ N+GN+L +L   A  +K  +   L N+ + +   +  IQ DI+     E    I+ 
Sbjct: 578 VSSVNKGNFLELLEMRAK-DKGEETFRLMNS-QVDFYNSTQIQSDIIEIIKTEMLQDIVN 635

Query: 150 DISDA-LFAILIDKSCDASMKEQVVVVLQYVDRNRFVI---ERFLGSKHVTSTITISLKE 205
           +I+D+  F+I+ D++ +++MKEQ+ + ++Y  ++   I   ERFLG           L  
Sbjct: 636 EINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAILIKERFLGFVDTEEMTGTHLHR 695

Query: 206 ALDQLFSKHGLSISRLRGQGHDRASNM 232
            +     + G+ + ++ GQ +D  +N+
Sbjct: 696 TIKTYLQQIGVDMDKIHGQAYDSTTNL 722



 Score = 32.7 bits (73), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)

Query: 8   CQPKFHNFCKSKFEQQQQRFNLAWFIKYQNCLEYSILKN----VAYCLCCYLF--QTIIC 61
           C PK    C SK ++ + +   +  IK   C ++  L+N    VA+C  C LF  +   C
Sbjct: 438 CHPK----CTSKVQKVKGK---SRSIKKSCCADFECLENSKKDVAFCYSCQLFCQKYFSC 490

Query: 62  KCETFTKNRFSNWKK 76
             E+F  +  SNWKK
Sbjct: 491 GRESFATHGTSNWKK 505


>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo
           sapiens GN=PRKRIR PE=1 SV=2
          Length = 761

 Score = 35.0 bits (79), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 132 QKDIVRACSIETTNTIIKDISDA-LFAILIDKSCDASMKEQVVVVLQYVDRNRFVIERFL 190
           Q+ ++  C        ++++ D+  F+I+ D   D + +E + V++++VD +  + E F+
Sbjct: 235 QRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFI 294

Query: 191 GSKHVTSTITISLKEALDQLFSKHGLSISRLRGQGHDRASNMVS 234
           G     +   I   +    +  K GL++   RGQ +  +S   S
Sbjct: 295 GFLPYEADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSS 338


>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus
           musculus GN=Prkrir PE=2 SV=2
          Length = 758

 Score = 33.1 bits (74), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 132 QKDIVRACSIETTNTIIKDISDA-LFAILIDKSCDASMKEQVVVVLQYVDRNRFVIERFL 190
           Q+ ++  C        ++++ D+  F+I+ D   D + +E + V++++VD    + E F+
Sbjct: 231 QRHMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDDAHNLREEFV 290

Query: 191 GSKHVTSTITISLKEALDQLFSKHGLSISRLRGQGHDRASNMVS 234
           G     +   I   +    +  K GL++   RGQ +  +S   S
Sbjct: 291 GFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIVSSGFSS 334


>sp|O22604|CFI_IPOPU Chalcone--flavonone isomerase OS=Ipomoea purpurea GN=CHI PE=2 SV=1
          Length = 241

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%)

Query: 155 LFAILIDKSCDASMKEQVVVVLQYVDRNRFVIERFLGSKHVTSTITISLKEALDQLFSKH 214
           L ++ +  S D SM E    V++    +  V+E  +GSK V+     SL   L ++F   
Sbjct: 159 LGSLTVSFSKDGSMPEIASAVIENKPLSEAVLESIIGSKGVSPEAKQSLAVRLSEMFING 218

Query: 215 GLSISRLRGQGHD 227
           G +IS   G  +D
Sbjct: 219 GDAISGKVGVEND 231


>sp|D3E2P3|COFC_METRM 2-phospho-L-lactate guanylyltransferase OS=Methanobrevibacter
           ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 /
           M1) GN=cofC PE=3 SV=1
          Length = 234

 Score = 31.2 bits (69), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 122 RYNILIAPSIQKDIVRACSIETTNTIIKDISDALFAILIDKSCDASMKEQVVVVLQYVDR 181
           R +  + P  ++D+++A        ++KDI+D L  I +DK    S  E+V+   + ++ 
Sbjct: 19  RLSPFLTPEERRDLLKA--------MLKDITDTLKPI-VDKVVIISRDEEVLAYAEELEL 69

Query: 182 NRFVIERFLGSKHVTSTITISLKEALDQ 209
              V E +  SK V S+    L +AL Q
Sbjct: 70  TTIVEEEYKKSKAVNSSDDNPLNKALKQ 97


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,023,464
Number of Sequences: 539616
Number of extensions: 3195162
Number of successful extensions: 9609
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9602
Number of HSP's gapped (non-prelim): 18
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)