Query 040037
Match_columns 253
No_of_seqs 205 out of 1319
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14291 DUF4371: Domain of un 100.0 3.1E-46 6.8E-51 321.0 5.4 146 92-238 90-235 (235)
2 smart00597 ZnF_TTF zinc finger 99.7 3.5E-17 7.6E-22 119.5 2.9 61 24-85 2-64 (90)
3 PF04937 DUF659: Protein of un 97.5 1.8E-05 3.8E-10 63.7 -0.6 87 155-250 33-121 (153)
4 KOG1121 Tam3-transposase (Ac f 87.4 0.67 1.5E-05 45.4 4.1 73 155-228 166-239 (641)
5 PF07535 zf-DBF: DBF zinc fing 50.5 14 0.0003 23.7 2.0 28 80-107 18-46 (49)
6 COG0400 Predicted esterase [Ge 30.6 49 0.0011 27.9 2.8 36 198-233 78-113 (207)
7 PHA03056 putative myristoylate 30.4 39 0.00085 26.3 2.0 77 159-235 34-124 (165)
8 PF03511 Fanconi_A: Fanconi an 30.2 81 0.0018 21.3 3.2 23 196-218 28-50 (64)
9 PF01890 CbiG_C: Cobalamin syn 27.2 86 0.0019 23.9 3.5 31 196-226 10-40 (121)
10 COG3814 Uncharacterized protei 26.0 1.8E+02 0.0039 22.9 5.0 37 211-251 27-65 (157)
11 COG1069 AraB Ribulose kinase [ 24.3 73 0.0016 30.8 3.0 33 201-233 54-86 (544)
12 PRK07027 cobalamin biosynthesi 22.9 79 0.0017 24.3 2.5 31 196-226 12-42 (126)
13 KOG0717 Molecular chaperone (D 22.3 43 0.00092 31.7 1.1 31 48-90 293-324 (508)
14 cd04875 ACT_F4HF-DF N-terminal 21.8 71 0.0015 21.5 1.9 37 195-231 4-40 (74)
15 smart00586 ZnF_DBF Zinc finger 21.5 63 0.0014 20.7 1.4 27 80-106 18-45 (49)
16 PF13613 HTH_Tnp_4: Helix-turn 20.6 2E+02 0.0044 18.1 3.8 48 166-214 3-50 (53)
No 1
>PF14291 DUF4371: Domain of unknown function (DUF4371)
Probab=100.00 E-value=3.1e-46 Score=321.03 Aligned_cols=146 Identities=34% Similarity=0.525 Sum_probs=139.5
Q ss_pred cCCcccHHHHHHHHhhcChhhHHHHhhCCCCcceecChhhHHHHHHHhhhhcccchhhhhcccceeeeccccCCCchHHH
Q 040037 92 TCNQGNYLRILRFLANHNKDIKKVTLKNAPRYNILIAPSIQKDIVRACSIETTNTIIKDISDALFAILIDKSCDASMKEQ 171 (253)
Q Consensus 92 ~~n~gnf~~ll~l~~~~~~~l~~~~l~~~~~~~~y~S~~i~~~~i~~i~~~i~~~i~~~i~~~~fSi~~DestDis~~~q 171 (253)
+.|+|||++|++++++++|.+.+++....+.+..|+|+++|+++ ++|++.+++.|+++++..+|||++|||||+|+.+|
T Consensus 90 s~n~GNFl~ll~l~~~~d~~l~~~~~~~~~~~~~~~s~~iq~~i-~~~a~~v~~~I~~~v~~~~FSii~DettDis~~eQ 168 (235)
T PF14291_consen 90 SLNNGNFLELLELLAKYDPELKKHLSKNAPKNAKYSSKTIQNEI-EILADHVRQSIVEEVKSKYFSIIVDETTDISNKEQ 168 (235)
T ss_pred ccccccHHHHHHHHHhhcccchhhhhcccccceeccHHHHHHHH-HHHHHHHHHHHHhhccccceeeeeeccccccccch
Confidence 67899999999999999999999554677788999999999998 99999999999999987799999999999999999
Q ss_pred HHHHHhhcccchhhhhhhhccccCccccHHHHHHHHHHHHhhcCCCCCCEEEEeccCccccccchhH
Q 040037 172 VVVVLQYVDRNRFVIERFLGSKHVTSTITISLKEALDQLFSKHGLSISRLRGQGHDRASNMVSCKSR 238 (253)
Q Consensus 172 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~Dgas~M~G~~~g 238 (253)
|+|+||||+.++.|+|+||+|++++++||++|+++|.++|.++|||+++|+||+|||||+|+|+++|
T Consensus 169 l~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M~G~~~G 235 (235)
T PF14291_consen 169 LSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNMSGKHNG 235 (235)
T ss_pred hhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhheeccCC
Confidence 9999999998888999999999999999999999999999999999999999999999999999987
No 2
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=99.66 E-value=3.5e-17 Score=119.48 Aligned_cols=61 Identities=33% Similarity=0.738 Sum_probs=53.8
Q ss_pred cccCChhHHhccCC-ceeccccCCeEEEeeeccccc-ccccccccccccccCccChhhhhhhhh
Q 040037 24 QQRFNLAWFIKYQN-CLEYSILKNVAYCLCCYLFQT-IICKCETFTKNRFSNWKKPKILESMLE 85 (253)
Q Consensus 24 ~r~F~~~W~~~~r~-WL~ys~~~~~~fC~~C~~f~~-~~~~~~~~~~~g~~~wkk~~~l~~Hi~ 85 (253)
.|+|+++|+++| + ||+||+.+|++||++|++|.. ..++..+|+++||+||++.+.|++|..
T Consensus 2 ~RrF~~~W~~~~-~~WL~YS~~~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~ 64 (90)
T smart00597 2 PRRFQRSWFKQF-PDWLEYSVEKDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEV 64 (90)
T ss_pred CccccccccccC-cchheeecccCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcC
Confidence 599999999999 7 999999999999999999963 224568999999999999977999963
No 3
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=97.50 E-value=1.8e-05 Score=63.71 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=66.5
Q ss_pred ceeeeccccCCCchHHHHHHHHhhcccchhhhhhhhccccCc--cccHHHHHHHHHHHHhhcCCCCCCEEEEeccCcccc
Q 040037 155 LFAILIDKSCDASMKEQVVVVLQYVDRNRFVIERFLGSKHVT--STITISLKEALDQLFSKHGLSISRLRGQGHDRASNM 232 (253)
Q Consensus 155 ~fSi~~DestDis~~~ql~i~vryv~~~~~i~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~Dgas~M 232 (253)
-.||++|+++|..+..-+.+.|.. +.+ .-||.-+... ..||+.|++.+.+++++.|- +|++.+.+|+|++|
T Consensus 33 Gcsi~~DgWtd~~~~~lInf~v~~--~~g---~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG~--~nVvqVVTDn~~~~ 105 (153)
T PF04937_consen 33 GCSIMSDGWTDRKGRSLINFMVYC--PEG---TVFLKSVDASSIIKTAEYLFELLDEVIEEVGE--ENVVQVVTDNASNM 105 (153)
T ss_pred CEEEEEecCcCCCCCeEEEEEEEc--ccc---cEEEEEEecccccccHHHHHHHHHHHHHHhhh--hhhhHHhccCchhH
Confidence 589999999998877555443322 122 3566666664 47999999999999999874 58999999999999
Q ss_pred ccchhHHHHHHHhcccce
Q 040037 233 VSCKSRDIFQEKYLKIMT 250 (253)
Q Consensus 233 ~G~~~g~~l~~~~p~~~~ 250 (253)
.+. |.+|.+++|.++.
T Consensus 106 ~~a--~~~L~~k~p~ifw 121 (153)
T PF04937_consen 106 KKA--GKLLMEKYPHIFW 121 (153)
T ss_pred HHH--HHHHHhcCCCEEE
Confidence 765 4688899998753
No 4
>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]
Probab=87.38 E-value=0.67 Score=45.40 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=65.6
Q ss_pred ceeeeccccCCC-chHHHHHHHHhhcccchhhhhhhhccccCccccHHHHHHHHHHHHhhcCCCCCCEEEEeccC
Q 040037 155 LFAILIDKSCDA-SMKEQVVVVLQYVDRNRFVIERFLGSKHVTSTITISLKEALDQLFSKHGLSISRLRGQGHDR 228 (253)
Q Consensus 155 ~fSi~~DestDi-s~~~ql~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~Dg 228 (253)
..++.+|.++|. .+...+++..+|++.+...+..++++.-....+++.|+..+..++.+++|. .++...+.|+
T Consensus 166 ~v~lT~d~w~~~~~~~~y~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n 239 (641)
T KOG1121|consen 166 RVSLTTDLWSDSGTDEGYMVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDN 239 (641)
T ss_pred ceEEEEeeecCCCCCcceEEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecc
Confidence 889999999987 567888899999999889999999999556799999999999999999998 6788899999
No 5
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=50.47 E-value=14 Score=23.69 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=17.8
Q ss_pred hhhhhhhhhhh-ccCCcccHHHHHHHHhh
Q 040037 80 LESMLEVLIEL-TTCNQGNYLRILRFLAN 107 (253)
Q Consensus 80 l~~Hi~~~~rl-~~~n~gnf~~ll~l~~~ 107 (253)
|..||.+.... -..+..||.+|=.|++.
T Consensus 18 l~~Hi~s~~Hr~FA~~~~Nf~~lD~li~~ 46 (49)
T PF07535_consen 18 LEEHIQSEKHRKFAENDSNFKELDSLISQ 46 (49)
T ss_pred HHHHhCCHHHHHHHcCcccHHHHHHHHHH
Confidence 66777655332 25678899888666653
No 6
>COG0400 Predicted esterase [General function prediction only]
Probab=30.60 E-value=49 Score=27.86 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCEEEEeccCccccc
Q 040037 198 TITISLKEALDQLFSKHGLSISRLRGQGHDRASNMV 233 (253)
Q Consensus 198 ~ta~~i~~~i~~~l~~~~l~~~~~~g~~~Dgas~M~ 233 (253)
..++.+.+.|....++++++.++++..+|.+.++|.
T Consensus 78 ~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ia 113 (207)
T COG0400 78 LETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIA 113 (207)
T ss_pred HHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHH
Confidence 456778889999999999999999999999887765
No 7
>PHA03056 putative myristoylated protein; Provisional
Probab=30.36 E-value=39 Score=26.29 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=51.6
Q ss_pred eccccCCCchHHHHHHHHhhcccc-hhhh--hhhhcccc--CccccHHHHHHHHHHHHhhcCCCCC---------CEEEE
Q 040037 159 LIDKSCDASMKEQVVVVLQYVDRN-RFVI--ERFLGSKH--VTSTITISLKEALDQLFSKHGLSIS---------RLRGQ 224 (253)
Q Consensus 159 ~~DestDis~~~ql~i~vryv~~~-~~i~--e~fl~~~~--~~~~ta~~i~~~i~~~l~~~~l~~~---------~~~g~ 224 (253)
+-||+.|-.+.+.+-+--||=|-. ..++ .+|..+.. ++....+.+.+.|+..|.++.||-+ -|-.+
T Consensus 34 isdesrdennpeyidfrnrygdyrsliiksdheFsnLCKd~l~~~~p~T~~~~IK~Il~qy~IP~S~Vvw~Pia~~cDiI 113 (165)
T PHA03056 34 ISDESRDENNPEYIDFRNRYGDYRSLIIKSDHEFVKLCKDHAEKSSPETQQMIIKHIYEQYLIPVSEVLLKPMMSMGDII 113 (165)
T ss_pred ecccccccCCchheehhhhccchhhhhhhccHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhCCEe
Confidence 579999999988888877775421 1122 34444332 2345556666889999999999843 35678
Q ss_pred eccCccccccc
Q 040037 225 GHDRASNMVSC 235 (253)
Q Consensus 225 ~~Dgas~M~G~ 235 (253)
+|.|+++....
T Consensus 114 TYynCsdn~W~ 124 (165)
T PHA03056 114 TYNGCKDNEWM 124 (165)
T ss_pred eecCCCccHHH
Confidence 99999885443
No 8
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=30.15 E-value=81 Score=21.27 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred ccccHHHHHHHHHHHHhhcCCCC
Q 040037 196 TSTITISLKEALDQLFSKHGLSI 218 (253)
Q Consensus 196 ~~~ta~~i~~~i~~~l~~~~l~~ 218 (253)
+..++-++...|..+|++.+++|
T Consensus 28 d~~kaldiCaeIL~cLE~R~isW 50 (64)
T PF03511_consen 28 DSLKALDICAEILGCLEKRKISW 50 (64)
T ss_pred ccHHHHHHHHHHHHHHHhCCCcH
Confidence 34677889999999999999998
No 9
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=27.24 E-value=86 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCCEEEEec
Q 040037 196 TSTITISLKEALDQLFSKHGLSISRLRGQGH 226 (253)
Q Consensus 196 ~~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~ 226 (253)
.+++.+.|.++|.+.|.+.++++..+..+++
T Consensus 10 r~~~~~~i~~ai~~~l~~~~~~~~~i~~ias 40 (121)
T PF01890_consen 10 RGAPAEEIEEAIEQALAEAGLSPRSIAAIAS 40 (121)
T ss_dssp SS--HHHHHHHHHHHHHHCT--GGGEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhhccEEEe
Confidence 3678999999999999999999988888765
No 10
>COG3814 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.05 E-value=1.8e+02 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=24.4
Q ss_pred HhhcCCCCCCE--EEEeccCccccccchhHHHHHHHhccccee
Q 040037 211 FSKHGLSISRL--RGQGHDRASNMVSCKSRDIFQEKYLKIMTY 251 (253)
Q Consensus 211 l~~~~l~~~~~--~g~~~Dgas~M~G~~~g~~l~~~~p~~~~~ 251 (253)
...-||++.+. +.+-+|+.++-.. .++++++|+-++.
T Consensus 27 va~~gLp~dhh~yItf~T~apgV~~~----s~lk~kYPeqmTI 65 (157)
T COG3814 27 VAATGLPGDHHFYITFLTGAPGVRIP----SKLKQKYPEQMTI 65 (157)
T ss_pred HhhcCCCCCcEEEEEEecCCCceecc----HHHHhhCccceEE
Confidence 34578999885 4455555443221 6899999987763
No 11
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=24.29 E-value=73 Score=30.82 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeccCccccc
Q 040037 201 ISLKEALDQLFSKHGLSISRLRGQGHDRASNMV 233 (253)
Q Consensus 201 ~~i~~~i~~~l~~~~l~~~~~~g~~~Dgas~M~ 233 (253)
+.+..+|.+++++.|++...++|.++|-+.++.
T Consensus 54 ~av~~aVr~~v~~agv~~~~V~gIGvDaTcSlv 86 (544)
T COG1069 54 EAVCAAVRDVVAKAGVDPADVVGIGVDATCSLV 86 (544)
T ss_pred HHHHHHHHHHHHHcCCChhHeeEEEEcceeeeE
Confidence 556778888999999999999999999998765
No 12
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.88 E-value=79 Score=24.25 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=26.3
Q ss_pred ccccHHHHHHHHHHHHhhcCCCCCCEEEEec
Q 040037 196 TSTITISLKEALDQLFSKHGLSISRLRGQGH 226 (253)
Q Consensus 196 ~~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~ 226 (253)
.+++.+.|.+.|.+.|.+.+|++..+.++++
T Consensus 12 ~~~~~e~i~~ai~~~L~~~~l~~~si~~las 42 (126)
T PRK07027 12 RGVPAEQIEAAIRAALAQRPLASADVRVVAT 42 (126)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHhheeEe
Confidence 3578889999999999999999888777766
No 13
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=43 Score=31.75 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEeeecc-cccccccccccccccccCccChhhhhhhhhhhhhh
Q 040037 48 AYCLCCYL-FQTIICKCETFTKNRFSNWKKPKILESMLEVLIEL 90 (253)
Q Consensus 48 ~fC~~C~~-f~~~~~~~~~~~~~g~~~wkk~~~l~~Hi~~~~rl 90 (253)
.||.+|-. |.+. +.|++|.+.++|..+.-.|
T Consensus 293 lyC~vCnKsFKse------------Kq~kNHEnSKKHkenv~eL 324 (508)
T KOG0717|consen 293 LYCVVCNKSFKSE------------KQLKNHENSKKHKENVAEL 324 (508)
T ss_pred eEEeeccccccch------------HHHHhhHHHHHHHHHHHHH
Confidence 89999954 5332 6688888888997766333
No 14
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.77 E-value=71 Score=21.51 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=29.2
Q ss_pred CccccHHHHHHHHHHHHhhcCCCCCCEEEEeccCccc
Q 040037 195 VTSTITISLKEALDQLFSKHGLSISRLRGQGHDRASN 231 (253)
Q Consensus 195 ~~~~ta~~i~~~i~~~l~~~~l~~~~~~g~~~Dgas~ 231 (253)
+...+..+|...|-+.|.++|+++.++....+++...
T Consensus 4 v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~ 40 (74)
T cd04875 4 LSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGR 40 (74)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCe
Confidence 3455667899999999999999999887776555544
No 15
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=21.52 E-value=63 Score=20.71 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=15.6
Q ss_pred hhhhhhhhh-hhccCCcccHHHHHHHHh
Q 040037 80 LESMLEVLI-ELTTCNQGNYLRILRFLA 106 (253)
Q Consensus 80 l~~Hi~~~~-rl~~~n~gnf~~ll~l~~ 106 (253)
|..||.+.. |.-..+..||.+|=+|++
T Consensus 18 l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~ 45 (49)
T smart00586 18 LETHLLSEKHRRFAENNDNFQALDDLIS 45 (49)
T ss_pred HHHHhccHHHHHHHcCchhHHHHHHHHH
Confidence 556665442 222556778887766654
No 16
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=20.59 E-value=2e+02 Score=18.10 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=35.0
Q ss_pred CchHHHHHHHHhhcccchhhhhhhhccccCccccHHHHHHHHHHHHhhc
Q 040037 166 ASMKEQVVVVLQYVDRNRFVIERFLGSKHVTSTITISLKEALDQLFSKH 214 (253)
Q Consensus 166 is~~~ql~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~ 214 (253)
.+-.+|+.+++.|...+ ...+.+-....+..+|+..++..+.+.|.+.
T Consensus 3 Ls~~d~lll~L~~LR~~-~~~~~La~~FgIs~stvsri~~~~~~~L~~~ 50 (53)
T PF13613_consen 3 LSLEDQLLLTLMYLRLN-LTFQDLAYRFGISQSTVSRIFHEWIPLLYQV 50 (53)
T ss_pred CCHHHHHHHHHHHHHcC-CcHhHHhhheeecHHHHHHHHHHHHHHHHHh
Confidence 35678999999998653 2344444556678899999999999888653
Done!