BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040039
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 53 ATLELTSDGNLVLQDADGAIAWSTNTSGKSVVGLNLTDMGNLVLFDKNNAAVWQS 107
+ L DGNLV +GA W+ T GK V GNLV++ NA +W S
Sbjct: 166 SKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 41 WSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNTSGKSVVGLNLTDMGNLVLFDKN 100
W+A + A + DGNLV+ A A+ W ++T G + L L G++ + D+
Sbjct: 187 WNAGTQGKGAVRAVFQ--GDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEK 244
Query: 101 NAAVWQSFD-HPT----DSLVPGQKLLE 123
VW F PT + P QK ++
Sbjct: 245 --PVWARFGFQPTYRHIRKINPDQKPID 270
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 20 IVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT- 78
++ + +L+ Y H VWS+N + P + L SDGN V+ DA+GA W++++
Sbjct: 23 LIMQEDCNLVLYDH---STAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSV 79
Query: 79 SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 80 RGNGNYVLVLQEDGNVVIY 98
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 20 IVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT- 78
++ + +L+ Y H VWS+N + P + L SDGN V+ DA+GA W++++
Sbjct: 23 LIMQEDCNLVLYDH---STAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASHSV 79
Query: 79 SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 80 RGNGNYVLVLQEDGNVVIY 98
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 55 LELTSDGNLVLQDADGAIAWSTNTS--GKSVVGLNLTDMGNLVLFDKNNAAVWQS 107
L + D NLVL D A+ WS+NT GK L GN V++D A++W S
Sbjct: 23 LIMQEDCNLVLYDHSTAV-WSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWAS 76
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 55 LELTSDGNLVLQDADGAIAWSTNTSG-KSVVGLNLTDMGNLVLFDKNNAAVWQS 107
L + D N VL D+ G W++NT G S L L + GNLV++D++N +WQ+
Sbjct: 24 LIMQGDCNFVLYDS-GKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 55 LELTSDGNLVLQDADGAIAWSTNTSGK 81
L L ++GNLV+ D + W T T+GK
Sbjct: 55 LTLHNNGNLVIYDQSNRVIWQTKTNGK 81
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 20 IVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT- 78
++ + +L+ Y H VW+ N + P + L SDGN V+ DA+G W++++
Sbjct: 23 LIMQEDCNLVLYDH---STAVWTTNTDIPGKKGCKAVLQSDGNFVVYDAEGRSLWASHSV 79
Query: 79 SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 80 RGNGNYVLVLQEDGNVVIY 98
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 57 LTSDGNLVLQDADGAIAWSTNTSGKS-VVGLNLTDMGNLVLFDKNNAAVWQS 107
+ D NLVL D D I W+TNT G S L++ GNLV+++ +N +W S
Sbjct: 25 MQEDCNLVLYDVDKPI-WATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWAS 75
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 18 VFIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTN 77
VFI+Q + +L+ Y + + +W+ N R + L + +DGNLV+ + W++N
Sbjct: 22 VFIMQE-DCNLVLY---DVDKPIWATNTGGLSR-SCFLSMQTDGNLVVYNPSNKPIWASN 76
Query: 78 TSGKS 82
T G++
Sbjct: 77 TGGQN 81
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 57 LTSDGNLVLQDADGAIAWSTNTSG-KSVVGLNLTDMGNLVLFDKNNAAVWQS 107
+ D NLVL D D I W+TNT G L++ GNLV++ N +W S
Sbjct: 25 MQEDCNLVLYDVDKPI-WATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWAS 75
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 18 VFIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTN 77
VFI+Q + +L+ Y + + +W+ N R L + SDGNLV+ W++N
Sbjct: 22 VFIMQE-DCNLVLY---DVDKPIWATNTGGLDR-RCHLSMQSDGNLVVYSPRNNPIWASN 76
Query: 78 TSGKS 82
T G++
Sbjct: 77 TGGEN 81
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 19 FIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT 78
FI+Q + +L+ Y H VW++N + L SDGN V+ DA+G W++++
Sbjct: 23 FIMQE-DCNLVLYDH---STSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHS 78
Query: 79 -SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 79 VRGNGNYVLVLQEDGNVVIY 98
>pdb|1DLP|A Chain A, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|B Chain B, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|C Chain C, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|D Chain D, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|E Chain E, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
pdb|1DLP|F Chain F, Structural Characterization Of The Native Fetuin-Binding
Protein Scilla Campanulata Agglutinin (Scafet): A Novel
Two-Domain Lectin
Length = 236
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 43 ANRNNPVRINAT---------LELTSDGNLVLQDADGAIAWSTNTSGKSV-VGLNLTDMG 92
N N+P ++AT L + +D NLVL D D + WSTNT+GK L G
Sbjct: 133 GNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDRDDRV-WSTNTAGKGTGCRAVLQPNG 191
Query: 93 NLVLFDKNNAAVWQS 107
+ + N AVW S
Sbjct: 192 RMDVLTNQNIAVWTS 206
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 57 LTSDGNLVLQDADGAIAWSTNTSGKSVVGLNLTDMGNLVLFDKNNAAVWQS 107
+ SD NLVL D+D + W++NT+G + L G LV+ N W S
Sbjct: 32 MQSDCNLVLFDSDVRV-WASNTAGATGCRAVLQSDGLLVILTAQNTIRWSS 81
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 54 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 107
TL + ++ NLV + G W+++T G+ S L L GNL+++D NN VW S
Sbjct: 22 TLTIQNNCNLV-KYQHGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGS 75
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 25 NASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNTSGKS 82
N +L+ YQH + +W+++ + L L SDGNL++ D + + W ++ G +
Sbjct: 28 NCNLVKYQH---GRQIWASDTDGQGS-QCRLTLRSDGNLIIYDDNNMVVWGSDCWGNN 81
>pdb|1BWU|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 19 FIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT 78
FI+Q + +L+ Y H VW++N + L SDGN V+ DA+G W++++
Sbjct: 23 FIMQE-DCNLVLYDH---STSVWASNTGILGKKGCRAVLQSDGNFVVYDAEGRSLWASHS 78
Query: 79 -SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 79 VRGNGNYVLVLQEDGNVVIY 98
>pdb|1XD6|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 18 VFIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTN 77
+FI+Q + +L+ Y + + VW++ N N L++ DGNLV+ A+ W++N
Sbjct: 22 LFIMQN-DCNLVLYDN---NRAVWASGTNGKAS-NCILKMQRDGNLVIYSGSRAM-WASN 75
Query: 78 TSGKS-VVGLNLTDMGNLVLFDKNNAAVWQS 107
T+ + L L N+V++D +N A+W S
Sbjct: 76 TNRQDGNYYLILQRDRNVVIYDNSNNAIWAS 106
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 19 FIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTN- 77
FI+Q + +L+ Y H W++N + + L SDGN V+ D+ G W+++
Sbjct: 23 FIMQD-DCNLVLYDH---STSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWASHS 78
Query: 78 TSGKSVVGLNLTDMGNLVLF 97
T G L L D GN++++
Sbjct: 79 TRGSGNYILILQDDGNVIIY 98
>pdb|1BWU|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 106
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 19 FIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTNT 78
FI+Q + +L+ Y H VW++N + L +DGN V+ DA+G W++++
Sbjct: 23 FIMQE-DCNLVLYDH---STSVWASNTGILGKKGCKAVLQADGNFVVYDAEGRSLWASHS 78
Query: 79 -SGKSVVGLNLTDMGNLVLF 97
G L L + GN+V++
Sbjct: 79 VRGNGNYVLVLQEDGNVVIY 98
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 54 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 107
TL + + NLV + +G W++NT + S L L GNLV++D NN VW S
Sbjct: 22 TLTIQNKCNLV-KYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 54 TLELTSDGNLVLQDADGAIAWSTNTSGK-SVVGLNLTDMGNLVLFDKNNAAVWQS 107
TL + + NLV + +G W++NT + S L L GNLV++D NN VW S
Sbjct: 23 TLTIQNKCNLV-KYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 18 VFIVQAYNASLIDYQHIEFPQVVWSANRNNPVRINATLELTSDGNLVLQDADGAIAWSTN 77
+FI+Q + +L+ Y + + VW++ N L++ +DGNLV+ AI W++N
Sbjct: 22 LFIIQN-DCNLVLYDN---NRAVWASGTNGKAS-GCVLKMQNDGNLVIYSGSRAI-WASN 75
Query: 78 TSGKS-VVGLNLTDMGNLVLFDKNNAAVW 105
T+ ++ L L N+V++D +N A+W
Sbjct: 76 TNRQNGNYYLILQRDRNVVIYDNSNNAIW 104
>pdb|1XNC|A Chain A, Thermostabilization Of The Bacillus Circulans Xylanase, By
The Introduction Of Disulfide Bonds
Length = 185
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 11 CDSYLFAVFIVQAYNASLIDYQHIEFPQVVWSANRNN-PVRINATLELT 58
CD + ++ YNA ID F Q WS ++ P NAT+ T
Sbjct: 100 CDGGTYDIYTTTRYNAPSIDGDRTTFTQY-WSVRQSKRPTGSNATITFT 147
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 85 GLNLTDMGNLVLFDKNNAAVWQSFDHPTDSLVPGQKLLEGKKLTASVSTTNWTDGGLFSL 144
G+++ G +V+ N+A +D +DS +PG + + +S + +DG +F++
Sbjct: 230 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM---SDGRVFTI 286
Query: 145 SVTNEG 150
++ G
Sbjct: 287 GGSHSG 292
>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
Length = 109
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 55 LELTSDGNLVLQDADGAIAWSTNTSGKSV-VGLNLTDMGNLVLFDKNNAAVWQS 107
L + D NLVL + + W +NT+ L LTD G LV+ + + + VW+S
Sbjct: 25 LVMQDDCNLVLYNGN----WQSNTANNGRDCKLTLTDYGELVIKNGDGSTVWKS 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,956
Number of Sequences: 62578
Number of extensions: 343882
Number of successful extensions: 944
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 903
Number of HSP's gapped (non-prelim): 45
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)