Query 040040
Match_columns 869
No_of_seqs 765 out of 4449
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-35 2.7E-40 365.2 26.3 454 1-541 387-909 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-34 4.1E-39 335.0 9.2 244 1-272 354-651 (889)
3 PLN00113 leucine-rich repeat r 100.0 5.6E-30 1.2E-34 316.4 26.1 501 141-749 90-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 1E-28 2.3E-33 305.1 25.2 506 144-757 69-590 (968)
5 PLN03210 Resistant to P. syrin 99.9 5.2E-22 1.1E-26 245.1 24.2 350 220-731 552-909 (1153)
6 KOG4194 Membrane glycoprotein 99.8 5.8E-21 1.3E-25 199.1 5.4 72 622-694 364-448 (873)
7 KOG4194 Membrane glycoprotein 99.8 3.6E-20 7.8E-25 193.3 6.9 356 287-747 79-448 (873)
8 KOG0472 Leucine-rich repeat pr 99.7 1.2E-20 2.6E-25 188.5 -14.2 177 174-390 46-222 (565)
9 KOG0472 Leucine-rich repeat pr 99.7 6.2E-21 1.3E-25 190.5 -17.1 38 684-729 504-541 (565)
10 KOG0618 Serine/threonine phosp 99.7 1.3E-18 2.8E-23 191.8 -3.5 253 437-747 240-506 (1081)
11 KOG0444 Cytoskeletal regulator 99.7 1E-18 2.2E-23 183.5 -6.1 227 117-389 31-260 (1255)
12 KOG0444 Cytoskeletal regulator 99.7 2.6E-18 5.6E-23 180.5 -4.5 367 170-640 4-379 (1255)
13 KOG0618 Serine/threonine phosp 99.6 3.1E-18 6.8E-23 188.8 -6.5 258 438-750 219-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 142.6 15.0 78 438-540 382-459 (788)
15 PRK15387 E3 ubiquitin-protein 99.3 4.7E-12 1E-16 145.4 12.0 169 438-676 201-370 (788)
16 KOG4237 Extracellular matrix p 99.3 4.8E-13 1E-17 134.5 -1.9 365 264-675 68-495 (498)
17 PRK15370 E3 ubiquitin-protein 99.2 4.7E-11 1E-15 138.2 10.6 73 314-407 178-250 (754)
18 PRK15370 E3 ubiquitin-protein 99.2 4.7E-11 1E-15 138.3 9.2 248 373-725 178-426 (754)
19 KOG4341 F-box protein containi 99.0 1.1E-11 2.4E-16 126.0 -6.6 94 173-278 138-231 (483)
20 KOG4341 F-box protein containi 99.0 1.4E-11 2.9E-16 125.4 -6.2 319 144-506 138-461 (483)
21 KOG4237 Extracellular matrix p 98.9 6.6E-11 1.4E-15 119.4 -2.8 94 130-236 57-150 (498)
22 KOG4658 Apoptotic ATPase [Sign 98.9 6.2E-10 1.3E-14 131.1 4.7 269 119-414 546-845 (889)
23 PF00931 NB-ARC: NB-ARC domain 98.9 1.7E-10 3.8E-15 121.7 -1.5 78 1-80 194-283 (287)
24 KOG0617 Ras suppressor protein 98.7 6.1E-10 1.3E-14 99.3 -3.7 159 198-391 31-190 (264)
25 cd00116 LRR_RI Leucine-rich re 98.4 7.3E-08 1.6E-12 103.6 1.0 14 141-154 48-61 (319)
26 cd00116 LRR_RI Leucine-rich re 98.4 6.5E-08 1.4E-12 104.0 0.4 37 438-474 250-288 (319)
27 KOG0617 Ras suppressor protein 98.3 7E-08 1.5E-12 86.4 -2.0 51 622-673 126-178 (264)
28 PRK15386 type III secretion pr 98.2 3.8E-06 8.2E-11 88.9 8.5 30 622-651 155-184 (426)
29 KOG1259 Nischarin, modulator o 98.2 5.5E-07 1.2E-11 88.0 1.3 123 589-748 282-409 (490)
30 KOG3207 Beta-tubulin folding c 98.2 4.2E-07 9E-12 93.8 0.3 58 684-747 245-310 (505)
31 PRK15386 type III secretion pr 98.1 9.4E-06 2E-10 86.0 8.9 31 464-506 156-186 (426)
32 KOG1259 Nischarin, modulator o 98.1 1.3E-06 2.8E-11 85.5 2.1 128 225-384 283-410 (490)
33 KOG3207 Beta-tubulin folding c 98.0 1.8E-06 4E-11 89.2 1.6 173 622-800 120-313 (505)
34 KOG2120 SCF ubiquitin ligase, 98.0 2.1E-07 4.5E-12 91.1 -5.3 41 198-240 208-248 (419)
35 PF14580 LRR_9: Leucine-rich r 98.0 7.5E-06 1.6E-10 77.3 4.9 107 261-384 17-124 (175)
36 PF14580 LRR_9: Leucine-rich r 97.9 7.5E-06 1.6E-10 77.3 3.1 36 198-237 17-53 (175)
37 KOG2120 SCF ubiquitin ligase, 97.7 2.8E-06 6E-11 83.3 -2.9 188 144-383 185-373 (419)
38 PF13855 LRR_8: Leucine rich r 97.7 5.9E-05 1.3E-09 58.0 4.4 58 174-236 2-59 (61)
39 PF13855 LRR_8: Leucine rich r 97.5 0.00014 3E-09 55.9 4.1 59 286-350 1-59 (61)
40 KOG1947 Leucine rich repeat pr 97.4 2.7E-05 5.9E-10 89.0 -1.3 39 198-236 186-224 (482)
41 KOG1947 Leucine rich repeat pr 97.3 1.8E-05 3.8E-10 90.6 -4.3 142 199-353 160-308 (482)
42 KOG3665 ZYG-1-like serine/thre 97.3 7E-05 1.5E-09 86.7 0.4 108 118-235 122-229 (699)
43 COG4886 Leucine-rich repeat (L 97.2 0.00023 5.1E-09 78.8 3.9 172 172-384 115-288 (394)
44 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.7E-09 84.6 0.9 133 143-297 121-261 (699)
45 COG4886 Leucine-rich repeat (L 97.1 0.00034 7.3E-09 77.5 4.0 174 141-350 113-287 (394)
46 KOG0532 Leucine-rich repeat (L 96.9 5.6E-05 1.2E-09 81.1 -4.0 174 141-350 95-270 (722)
47 KOG0532 Leucine-rich repeat (L 96.8 4.9E-05 1.1E-09 81.5 -5.8 128 141-298 118-246 (722)
48 PF12799 LRR_4: Leucine Rich r 96.2 0.0068 1.5E-07 42.5 3.7 35 200-237 1-35 (44)
49 PF12799 LRR_4: Leucine Rich r 96.1 0.0081 1.8E-07 42.1 3.6 40 173-217 1-40 (44)
50 KOG1859 Leucine-rich repeat pr 96.0 0.00031 6.8E-09 77.6 -5.6 108 259-384 183-290 (1096)
51 PLN03150 hypothetical protein; 95.6 0.023 4.9E-07 66.4 7.2 110 264-388 419-530 (623)
52 KOG1859 Leucine-rich repeat pr 95.6 0.00081 1.8E-08 74.5 -4.5 122 589-725 162-290 (1096)
53 PLN03150 hypothetical protein; 95.5 0.026 5.6E-07 65.9 7.2 105 174-297 419-526 (623)
54 KOG2982 Uncharacterized conser 95.4 0.0028 6E-08 62.9 -1.2 157 622-783 96-268 (418)
55 KOG2982 Uncharacterized conser 95.3 0.0038 8.1E-08 62.0 -0.5 155 622-799 70-235 (418)
56 KOG1644 U2-associated snRNP A' 95.1 0.051 1.1E-06 51.3 6.1 106 285-407 41-149 (233)
57 KOG0531 Protein phosphatase 1, 94.4 0.011 2.3E-07 65.7 -0.1 33 687-725 234-266 (414)
58 KOG1909 Ran GTPase-activating 94.3 0.0094 2E-07 60.8 -0.7 40 198-237 90-131 (382)
59 KOG1644 U2-associated snRNP A' 94.1 0.09 2E-06 49.7 5.3 95 279-384 57-151 (233)
60 KOG0531 Protein phosphatase 1, 92.5 0.031 6.7E-07 62.1 -0.5 57 171-235 93-149 (414)
61 KOG2123 Uncharacterized conser 92.1 0.013 2.8E-07 57.7 -3.5 94 622-721 18-124 (388)
62 KOG2739 Leucine-rich acidic nu 92.0 0.095 2.1E-06 51.7 2.2 85 143-238 42-128 (260)
63 KOG2739 Leucine-rich acidic nu 91.8 0.1 2.2E-06 51.5 2.3 66 283-351 62-127 (260)
64 KOG3864 Uncharacterized conser 90.7 0.034 7.3E-07 52.5 -2.2 43 313-355 124-166 (221)
65 KOG3864 Uncharacterized conser 90.6 0.044 9.6E-07 51.8 -1.5 66 170-237 122-187 (221)
66 KOG1909 Ran GTPase-activating 90.6 0.057 1.2E-06 55.3 -0.9 40 564-603 91-133 (382)
67 PF13504 LRR_7: Leucine rich r 89.5 0.21 4.6E-06 26.8 1.2 17 714-732 1-17 (17)
68 KOG4579 Leucine-rich repeat (L 87.1 0.047 1E-06 48.1 -3.6 60 198-273 51-110 (177)
69 PF00560 LRR_1: Leucine Rich R 87.0 0.36 7.8E-06 27.9 1.2 18 624-641 1-18 (22)
70 KOG2123 Uncharacterized conser 86.8 0.035 7.5E-07 54.9 -5.1 14 371-384 86-99 (388)
71 PF13306 LRR_5: Leucine rich r 81.8 6.5 0.00014 35.0 7.8 33 313-348 57-89 (129)
72 KOG4579 Leucine-rich repeat (L 80.2 0.34 7.4E-06 42.9 -1.2 74 591-674 53-129 (177)
73 PF13306 LRR_5: Leucine rich r 76.6 9.9 0.00022 33.8 7.3 81 141-234 9-89 (129)
74 smart00367 LRR_CC Leucine-rich 71.0 2.7 5.9E-05 25.4 1.4 16 200-215 2-17 (26)
75 smart00370 LRR Leucine-rich re 67.5 2.8 6E-05 25.3 0.9 19 623-641 2-20 (26)
76 smart00369 LRR_TYP Leucine-ric 67.5 2.8 6E-05 25.3 0.9 19 623-641 2-20 (26)
77 smart00364 LRR_BAC Leucine-ric 49.5 8.5 0.00018 23.3 0.8 18 714-733 2-19 (26)
78 COG5238 RNA1 Ran GTPase-activa 48.2 7.2 0.00016 39.1 0.5 150 198-350 90-252 (388)
79 PF13516 LRR_6: Leucine Rich r 35.1 22 0.00047 20.8 1.0 12 714-725 2-13 (24)
80 smart00365 LRR_SD22 Leucine-ri 34.1 25 0.00055 21.4 1.2 16 623-638 2-17 (26)
81 COG5238 RNA1 Ran GTPase-activa 28.0 84 0.0018 31.9 4.2 71 762-848 90-165 (388)
82 PF07725 LRR_3: Leucine Rich R 22.8 51 0.0011 18.7 1.0 18 287-304 1-18 (20)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-35 Score=365.21 Aligned_cols=454 Identities=17% Similarity=0.212 Sum_probs=305.2
Q ss_pred CCcchhHHHHhhhcCCChhhHHHHHHHhcCCCccchhhHHHHhhccceecccccCcccccchheecccCCCc--------
Q 040040 1 SPFLALTTITRALKNKSVPEWENVLQELQRPSMKNFQGVLKEACSTIELHYKYLKGEKLKKIFLLCSCHDPT-------- 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lK~CFlycs~Fped-------- 72 (869)
|+||||+++|+.|++|+.++|+++++++++.. +.+|.++|++|||+|+++..|.||+|||+||.+
T Consensus 387 GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~ 459 (1153)
T PLN03210 387 NLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKL 459 (1153)
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHH
Confidence 78999999999999999999999999987622 246889999999999865689999999999975
Q ss_pred cccchhhhc--------cc-ccc--cccCCCchhHHHHHHhhhccc---------c-hhhhHHH----------------
Q 040040 73 QTCHDIRDS--------AC-PLK--RCLDKPQEKTNDISLKLNASI---------C-LKDKFFT---------------- 115 (869)
Q Consensus 73 w~~~g~~~~--------~~-~~~--~~~~~~~~~~r~l~~~~~~~~---------~-~~~~~~~---------------- 115 (869)
|.+.+..+. .+ .+. .....||+.+|+|+.+++..- . .++.+.+
T Consensus 460 ~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l 539 (1153)
T PLN03210 460 LLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITL 539 (1153)
T ss_pred HHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEe
Confidence 333221110 00 111 122468999999998775211 0 0112222
Q ss_pred ----------------HhccCceeeecccc--Ccc----ccccccCCCCC-CCccEEEEecCCCceecCCCCCCCCCCCC
Q 040040 116 ----------------QLKGLEELWLDEVQ--GVE----NVVYELDREGF-PSLKLLHIQNNPYLLCINDSTELVPRDAF 172 (869)
Q Consensus 116 ----------------~l~~l~~L~l~~~~--~~~----~~~~~~~~~~~-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 172 (869)
.+++++.|.+.... ... .++..+ ..+ ++||.|.+.++ .++.+|..+ .+
T Consensus 540 ~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~-~l~~lP~~f------~~ 610 (1153)
T PLN03210 540 DIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKY-PLRCMPSNF------RP 610 (1153)
T ss_pred ccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCC-CCCCCCCcC------Cc
Confidence 22333333332110 000 001111 111 34566666555 445555443 45
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDIN 252 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 252 (869)
.+|++|++.++ +++.+|.+ ...+++|++|++++|..++.+| .++.+++|++|++++|..+..+|
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp--------- 674 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDG---VHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELP--------- 674 (1153)
T ss_pred cCCcEEECcCc-cccccccc---cccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccc---------
Confidence 78888998887 67777766 5678999999999888887774 46788999999999998888888
Q ss_pred CccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccc-ccccccCCCCCcccccCCceEEEEecCCCCcccc
Q 040040 253 NTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAIN-SETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLF 331 (869)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 331 (869)
..+..+++|+.|++++|..++.+|....+++|+.|++++|. +.. +|. ..++|+.|++.++ .++.+
T Consensus 675 ----~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~-----~p~---~~~nL~~L~L~~n-~i~~l- 740 (1153)
T PLN03210 675 ----SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKS-----FPD---ISTNISWLDLDET-AIEEF- 740 (1153)
T ss_pred ----hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc-----ccc---ccCCcCeeecCCC-ccccc-
Confidence 45667889999999999988888877678899999998886 322 232 2457888888775 45554
Q ss_pred ChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCcc
Q 040040 332 STSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPEL 411 (869)
Q Consensus 332 ~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l 411 (869)
|.. ..+++|++|.+.+|... .+....... .......+++|+.|++++|+.+..+|.. ...+++|+.|++.+|+++
T Consensus 741 P~~--~~l~~L~~L~l~~~~~~-~l~~~~~~l-~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 741 PSN--LRLENLDELILCEMKSE-KLWERVQPL-TPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccc--ccccccccccccccchh-hcccccccc-chhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCc
Confidence 432 25778888888765421 111000000 0001123578888888888877777754 346788888888888888
Q ss_pred ccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCcccc
Q 040040 412 KAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEET 491 (869)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 491 (869)
+.+|.. ..+++|+.|++++|..+.. +|. ..++|++|++++ +.++.+|.. +
T Consensus 816 ~~LP~~-----------------~~L~sL~~L~Ls~c~~L~~-~p~----~~~nL~~L~Ls~-n~i~~iP~s-------i 865 (1153)
T PLN03210 816 ETLPTG-----------------INLESLESLDLSGCSRLRT-FPD----ISTNISDLNLSR-TGIEEVPWW-------I 865 (1153)
T ss_pred CeeCCC-----------------CCccccCEEECCCCCcccc-ccc----cccccCEeECCC-CCCccChHH-------H
Confidence 877743 1267888888888877754 343 246788888887 566666532 1
Q ss_pred ccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccc
Q 040040 492 HSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSI 541 (869)
Q Consensus 492 ~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l 541 (869)
..+++|+.|++.+|++|+.+ |..+..+++|+.+++++|++|+.+
T Consensus 866 --~~l~~L~~L~L~~C~~L~~l----~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 866 --EKFSNLSFLDMNGCNNLQRV----SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred --hcCCCCCEEECCCCCCcCcc----CcccccccCCCeeecCCCcccccc
Confidence 36788888888888888887 667777888888888888887755
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-34 Score=335.04 Aligned_cols=244 Identities=23% Similarity=0.308 Sum_probs=165.9
Q ss_pred CCcchhHHHHhhhcCC-ChhhHHHHHHHhcCCCccchhhHHHHhhccceecccccCcccccchheecccCCCc-------
Q 040040 1 SPFLALTTITRALKNK-SVPEWENVLQELQRPSMKNFQGVLKEACSTIELHYKYLKGEKLKKIFLLCSCHDPT------- 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lK~CFlycs~Fped------- 72 (869)
|+|||++|||++|++| ++.||+++.+.+.++-..+..++++.|+++|++|||+|| +++|.||+|||+||||
T Consensus 354 GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~ 432 (889)
T KOG4658|consen 354 GLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEK 432 (889)
T ss_pred ChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHHHHhhccCCcccccchHH
Confidence 7999999999999999 889999999999986567778888899999999999999 6899999999999997
Q ss_pred ----cccchhhhccc---ccc-----------------c-------ccCCCchhHHHHHHhhhcccch-------hh--h
Q 040040 73 ----QTCHDIRDSAC---PLK-----------------R-------CLDKPQEKTNDISLKLNASICL-------KD--K 112 (869)
Q Consensus 73 ----w~~~g~~~~~~---~~~-----------------~-------~~~~~~~~~r~l~~~~~~~~~~-------~~--~ 112 (869)
|+||||++... .++ + ...+|||++|+||+|++..+.. .+ +
T Consensus 433 Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~ 512 (889)
T KOG4658|consen 433 LIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVG 512 (889)
T ss_pred HHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcC
Confidence 99999885311 111 0 1125799999999998863221 11 1
Q ss_pred HHH-----HhccCceeeeccccCccccccccCCCCCCCccEEEEecCCC-ceecCCCCCCCCCCCCCCccEeeccccccc
Q 040040 113 FFT-----QLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPY-LLCINDSTELVPRDAFPLLESLSLSNLMNL 186 (869)
Q Consensus 113 ~~~-----~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l 186 (869)
.++ .....+..++.+ .....+.. ...+++|++|-+.++.. +..++..+ +..+|.|++|++++|..+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~-~~~~~~~~---~~~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMN-NKIEHIAG---SSENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred ccccccccchhheeEEEEec-cchhhccC---CCCCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCcc
Confidence 111 011222233222 11111111 14456777777777642 44443332 356777888888877777
Q ss_pred cccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCccc
Q 040040 187 EKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLR 266 (869)
Q Consensus 187 ~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~ 266 (869)
.++|.. ++.+.+||||+++++. ++.+|. .+++|..|.+|++..+..+..++ .....+++||
T Consensus 585 ~~LP~~---I~~Li~LryL~L~~t~-I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~-------------~i~~~L~~Lr 645 (889)
T KOG4658|consen 585 SKLPSS---IGELVHLRYLDLSDTG-ISHLPS--GLGNLKKLIYLNLEVTGRLESIP-------------GILLELQSLR 645 (889)
T ss_pred CcCChH---HhhhhhhhcccccCCC-ccccch--HHHHHHhhheecccccccccccc-------------chhhhccccc
Confidence 777766 6777788888887773 777765 67777777777777766555443 1223366777
Q ss_pred EEeccC
Q 040040 267 KLTLKS 272 (869)
Q Consensus 267 ~L~l~~ 272 (869)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 776644
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5.6e-30 Score=316.43 Aligned_cols=501 Identities=18% Similarity=0.120 Sum_probs=272.1
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccc-cccccccccccCCCCEEEecCCCCCcccCCh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEK-ISCSQLRAESFLRLRNLKVESCEKLTHIFSF 219 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 219 (869)
..+++|++|+++++.-...+|... ...+++|++|+++++ ++.+ ++ .+.+++|++|++++|. +....+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~----~~~l~~L~~L~Ls~n-~l~~~~p-----~~~l~~L~~L~Ls~n~-~~~~~p- 157 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDI----FTTSSSLRYLNLSNN-NFTGSIP-----RGSIPNLETLDLSNNM-LSGEIP- 157 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHH----hccCCCCCEEECcCC-ccccccC-----ccccCCCCEEECcCCc-ccccCC-
Confidence 456677777776663222344322 135567777777766 3322 22 2356677777777664 332222
Q ss_pred hhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc-ccccCCCcCEEEeccccc
Q 040040 220 SISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINS 298 (869)
Q Consensus 220 ~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l 298 (869)
..++.+++|++|++++|.....+| ..+.++++|++|+++++.-...+| .+..+++|++|++++|.+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIP-------------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCC-------------hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 256667777777777665434444 334556677777776655333333 234566777777776653
Q ss_pred cccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCcccee
Q 040040 299 ETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFL 378 (869)
Q Consensus 299 ~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L 378 (869)
.. ..|..++.+++|++|++++|..... .| ..++.+++|++|+++++. +...... ....+++|+.|
T Consensus 225 ~~----~~p~~l~~l~~L~~L~L~~n~l~~~-~p-~~l~~l~~L~~L~L~~n~-l~~~~p~--------~l~~l~~L~~L 289 (968)
T PLN00113 225 SG----EIPYEIGGLTSLNHLDLVYNNLTGP-IP-SSLGNLKNLQYLFLYQNK-LSGPIPP--------SIFSLQKLISL 289 (968)
T ss_pred CC----cCChhHhcCCCCCEEECcCceeccc-cC-hhHhCCCCCCEEECcCCe-eeccCch--------hHhhccCcCEE
Confidence 32 2344445566777777766543222 23 335666777777776653 2221111 13455667777
Q ss_pred ecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchh
Q 040040 379 KMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHN 458 (869)
Q Consensus 379 ~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 458 (869)
++++|. +..........+++|+.|++.++.-....|.. ...+++|+.|++++|.. ...+|.
T Consensus 290 ~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----------------~~~l~~L~~L~L~~n~l-~~~~p~- 350 (968)
T PLN00113 290 DLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKIPVA----------------LTSLPRLQVLQLWSNKF-SGEIPK- 350 (968)
T ss_pred ECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcCChh----------------HhcCCCCCEEECcCCCC-cCcCCh-
Confidence 776664 32222222234566667766654332222210 02256677777766643 223343
Q ss_pred HHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCc
Q 040040 459 MFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRL 538 (869)
Q Consensus 459 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L 538 (869)
.++.+++|+.|++++|.....++. .. ..+++|+.|++.++.-...+ |..+..+++|+.|++.+|+ +
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~-------~~--~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~L~~L~L~~n~-l 416 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPE-------GL--CSSGNLFKLILFSNSLEGEI----PKSLGACRSLRRVRLQDNS-F 416 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCCh-------hH--hCcCCCCEEECcCCEecccC----CHHHhCCCCCCEEECcCCE-e
Confidence 345566777777766433223322 11 24456666666665433333 5556666777777776643 3
Q ss_pred ccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccC-ccccccceeeEee
Q 040040 539 KSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNP-SFGSKSLVMLLCL 616 (869)
Q Consensus 539 ~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~-~~~~~~~~~~~~~ 616 (869)
....|.++ ..+++|+.|+++++......+..... +++|+.|++++ ++. .++...
T Consensus 417 ~~~~p~~~---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~p~~~------- 472 (968)
T PLN00113 417 SGELPSEF---------------TKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLARNKFFGGLPDSF------- 472 (968)
T ss_pred eeECChhH---------------hcCCCCCEEECcCCcccCccChhhcc--CCCCcEEECcCceeeeecCccc-------
Confidence 32224322 22566666666665543333322222 36666776666 433 222211
Q ss_pred ecceeccccceeeeecccceeeeccc---cccceEEEe-ecCCCccchHHHHHhccccceEEEE---EE----ecccccc
Q 040040 617 IGQQVFPNLEELTLSKYIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLK---VE----EHAEGIA 685 (869)
Q Consensus 617 ~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l-~~~~~~~~p~~~l~~l~~L~~L~l~---~~----~~~~~~~ 685 (869)
..++|+.|++++|.+.+..+.. +++|+.|++ .|+..+.+|.. +..+++|++|+++ +. .....++
T Consensus 473 ----~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 473 ----GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred ----ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcccccCChhHhCcc
Confidence 1356777777777766544432 566677777 34444455543 5667777777766 11 2233467
Q ss_pred cccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhccccCC
Q 040040 686 QIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLESSG 749 (869)
Q Consensus 686 ~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~l~ 749 (869)
+|+.|++++|.... ..|..+..+++|+.|++++|+- ...+|..+.|..+....+.+.+
T Consensus 548 ~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~l~ls~N~l-~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 548 VLSQLDLSQNQLSG-----EIPKNLGNVESLVQVNISHNHL-HGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred cCCEEECCCCcccc-----cCChhHhcCcccCEEeccCCcc-eeeCCCcchhcccChhhhcCCc
Confidence 88888888874433 3355677889999999999982 4456766666666655555444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1e-28 Score=305.13 Aligned_cols=506 Identities=17% Similarity=0.115 Sum_probs=355.3
Q ss_pred CCccEEEEecCCCce-ecCCCCCCCCCCCCCCccEeecccccccc-ccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 144 PSLKLLHIQNNPYLL-CINDSTELVPRDAFPLLESLSLSNLMNLE-KISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.+++.|+++++ .+. .++.. +..+++|++|+++++ ++. .++... ...+.+|++|++++|. +....|
T Consensus 69 ~~v~~L~L~~~-~i~~~~~~~-----~~~l~~L~~L~Ls~n-~~~~~ip~~~--~~~l~~L~~L~Ls~n~-l~~~~p--- 135 (968)
T PLN00113 69 SRVVSIDLSGK-NISGKISSA-----IFRLPYIQTINLSNN-QLSGPIPDDI--FTTSSSLRYLNLSNNN-FTGSIP--- 135 (968)
T ss_pred CcEEEEEecCC-CccccCChH-----HhCCCCCCEEECCCC-ccCCcCChHH--hccCCCCCEEECcCCc-cccccC---
Confidence 57899999887 333 22222 357899999999998 444 454432 1278999999999985 443322
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEeccccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l~~ 300 (869)
.+.+++|++|+++++.....+| ..+..+++|++|+++++.-...+|. +..+++|++|++++|.+..
T Consensus 136 ~~~l~~L~~L~Ls~n~~~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 136 RGSIPNLETLDLSNNMLSGEIP-------------NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred ccccCCCCEEECcCCcccccCC-------------hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC
Confidence 3578999999999986544555 4567799999999999765444443 5678999999999997432
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
.+|..++.+++|+.|++++|..... .| ..++.+++|++|++++|.-...++. ....+++|+.|++
T Consensus 203 ----~~p~~l~~l~~L~~L~L~~n~l~~~-~p-~~l~~l~~L~~L~L~~n~l~~~~p~---------~l~~l~~L~~L~L 267 (968)
T PLN00113 203 ----QIPRELGQMKSLKWIYLGYNNLSGE-IP-YEIGGLTSLNHLDLVYNNLTGPIPS---------SLGNLKNLQYLFL 267 (968)
T ss_pred ----cCChHHcCcCCccEEECcCCccCCc-CC-hhHhcCCCCCEEECcCceeccccCh---------hHhCCCCCCEEEC
Confidence 3555567799999999998754433 34 4478999999999999743223322 2567899999999
Q ss_pred ccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHH
Q 040040 381 KDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMF 460 (869)
Q Consensus 381 ~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 460 (869)
+++.-...++. ....+++|+.|++++|.-...+|.. ...+++|+.|++.+|... ...|. .+
T Consensus 268 ~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~----------------~~~l~~L~~L~l~~n~~~-~~~~~-~~ 328 (968)
T PLN00113 268 YQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPEL----------------VIQLQNLEILHLFSNNFT-GKIPV-AL 328 (968)
T ss_pred cCCeeeccCch-hHhhccCcCEEECcCCeeccCCChh----------------HcCCCCCcEEECCCCccC-CcCCh-hH
Confidence 98862223332 3346789999999887543333321 123689999999887643 33454 46
Q ss_pred hhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCccc
Q 040040 461 ARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKS 540 (869)
Q Consensus 461 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~ 540 (869)
..+++|+.|++++|.....++.. . +.+++|+.|+++++.--..+ |..+..+++|+.|+++++ ++..
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~-------l--~~~~~L~~L~Ls~n~l~~~~----p~~~~~~~~L~~L~l~~n-~l~~ 394 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKN-------L--GKHNNLTVLDLSTNNLTGEI----PEGLCSSGNLFKLILFSN-SLEG 394 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChH-------H--hCCCCCcEEECCCCeeEeeC----ChhHhCcCCCCEEECcCC-Eecc
Confidence 78999999999997654444431 1 36789999999987544444 778888999999999985 4554
Q ss_pred ccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecc
Q 040040 541 IFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQ 619 (869)
Q Consensus 541 l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~ 619 (869)
.+|.++ ..+++|+.|++.+|......+..... +++|+.|++++ .+........
T Consensus 395 ~~p~~~---------------~~~~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~~~~~--------- 448 (968)
T PLN00113 395 EIPKSL---------------GACRSLRRVRLQDNSFSGELPSEFTK--LPLVYFLDISNNNLQGRINSRK--------- 448 (968)
T ss_pred cCCHHH---------------hCCCCCCEEECcCCEeeeECChhHhc--CCCCCEEECcCCcccCccChhh---------
Confidence 446544 24789999999998765555544443 48999999998 6654322110
Q ss_pred eeccccceeeeecccceeeeccc--cccceEEEe-ecCCCccchHHHHHhccccceEEEE---EE----ecccccccccE
Q 040040 620 QVFPNLEELTLSKYIFTTWRQAQ--FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLK---VE----EHAEGIAQIKS 689 (869)
Q Consensus 620 ~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l-~~~~~~~~p~~~l~~l~~L~~L~l~---~~----~~~~~~~~L~~ 689 (869)
..+++|+.|++++|.+.+..+.. .++|+.|++ .+...+.+|.. +..+++|+.|+++ +. .....+++|+.
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence 13689999999999988765543 578999999 55555677755 7889999999998 22 22334788999
Q ss_pred EEcCccccccccccCCCCCcccccCCccEEEEecccchhh-ccccee-EecccchhccccCCCcceeecC
Q 040040 690 LKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLI-SLRIEI-VFSKLKWLFLESSGSITSFCSG 757 (869)
Q Consensus 690 L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~-~l~~~~-~~~~L~~L~l~~l~~l~~~~~~ 757 (869)
|++++|.-. +..+.....+++|+.|++++|. +. .+|... .+++|+.|++.+++-...++..
T Consensus 528 L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 528 LDLSHNQLS-----GQIPASFSEMPVLSQLDLSQNQ--LSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EECCCCccc-----ccCChhHhCcccCCEEECCCCc--ccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999987433 3345556788999999999997 44 445432 4667888888877655455543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.2e-22 Score=245.06 Aligned_cols=350 Identities=22% Similarity=0.302 Sum_probs=243.1
Q ss_pred hhhcCCCCCcEEEEeecC--Cce----eeeccccccccCCccccccccC-CcccEEeccCCCCcccccccccCCCcCEEE
Q 040040 220 SISRGLPQLQTIKVTACK--NMK----VIFEVGREDDINNTEVIDKIEF-SQLRKLTLKSLPQLRSFCSVVAFPNLETLK 292 (869)
Q Consensus 220 ~~~~~L~~L~~L~l~~c~--~l~----~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~ 292 (869)
..+.++++|+.|.+.... ... .+| .++..+ .+|+.|.+.+++ ++.+|....+.+|++|+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-------------~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~ 617 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-------------EGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQ 617 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecC-------------cchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEE
Confidence 467889999999996532 100 112 122233 469999998864 67778777789999999
Q ss_pred eccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccccccccccccccccc
Q 040040 293 LSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVF 372 (869)
Q Consensus 293 L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~ 372 (869)
+.++.++.+|.+. ..+++|+.|++++|..++.+ |. +..+++|+.|++++|..+..++.. +..+
T Consensus 618 L~~s~l~~L~~~~-----~~l~~Lk~L~Ls~~~~l~~i-p~--ls~l~~Le~L~L~~c~~L~~lp~s---------i~~L 680 (1153)
T PLN03210 618 MQGSKLEKLWDGV-----HSLTGLRNIDLRGSKNLKEI-PD--LSMATNLETLKLSDCSSLVELPSS---------IQYL 680 (1153)
T ss_pred CcCcccccccccc-----ccCCCCCEEECCCCCCcCcC-Cc--cccCCcccEEEecCCCCccccchh---------hhcc
Confidence 9999988887652 35899999999999888876 32 677899999999999988887643 5678
Q ss_pred CccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcc
Q 040040 373 PQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLW 452 (869)
Q Consensus 373 ~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 452 (869)
++|+.|++++|.+++.+|... .+++|+.|.+.+|..++.+|.. ..+|+.|++.++. +.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~-------------------~~nL~~L~L~~n~-i~ 738 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI-------------------STNISWLDLDETA-IE 738 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc-------------------cCCcCeeecCCCc-cc
Confidence 999999999999999998754 5889999999999988887742 5789999998775 44
Q ss_pred cccchhHHhhcCCccEEEEcccCCcccccccc-ccCccccccccccccceeecccccccccccccCCCCcccCCCccEEE
Q 040040 453 TIFPHNMFARFLKLQSLIVGACGSLEEIFNLQ-ELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVR 531 (869)
Q Consensus 453 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~ 531 (869)
. +|... .+++|++|.+.+|.... +.... ...... ...+++|+.|++++|+.+..+ |..+.++++|+.|+
T Consensus 739 ~-lP~~~--~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~--~~~~~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~ 808 (1153)
T PLN03210 739 E-FPSNL--RLENLDELILCEMKSEK-LWERVQPLTPLM--TMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLE 808 (1153)
T ss_pred c-ccccc--cccccccccccccchhh-ccccccccchhh--hhccccchheeCCCCCCcccc----ChhhhCCCCCCEEE
Confidence 3 46543 57889999888754321 11100 000000 024567888888888777777 77788888888888
Q ss_pred EecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeeccccCccccccce
Q 040040 532 IFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQLKNPSFGSKSLV 611 (869)
Q Consensus 532 l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~ 611 (869)
+++|++++.+ |..+ .+++|+.|++++|..+..++.
T Consensus 809 Ls~C~~L~~L-P~~~----------------~L~sL~~L~Ls~c~~L~~~p~---------------------------- 843 (1153)
T PLN03210 809 IENCINLETL-PTGI----------------NLESLESLDLSGCSRLRTFPD---------------------------- 843 (1153)
T ss_pred CCCCCCcCee-CCCC----------------CccccCEEECCCCCccccccc----------------------------
Confidence 8888888776 6422 256777777777766544321
Q ss_pred eeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccccEEE
Q 040040 612 MLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLK 691 (869)
Q Consensus 612 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~ 691 (869)
.+++|++|++++|.+.. +|.+ +.. +++|+.|+
T Consensus 844 ---------~~~nL~~L~Ls~n~i~~---------------------iP~s-i~~-----------------l~~L~~L~ 875 (1153)
T PLN03210 844 ---------ISTNISDLNLSRTGIEE---------------------VPWW-IEK-----------------FSNLSFLD 875 (1153)
T ss_pred ---------cccccCEeECCCCCCcc---------------------ChHH-Hhc-----------------CCCCCEEE
Confidence 13456666666554433 4433 222 34555666
Q ss_pred cCccccccccccCCCCCcccccCCccEEEEecccchhhcc
Q 040040 692 LNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISL 731 (869)
Q Consensus 692 l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l 731 (869)
+++|++|+ .+. .....+++|+.|++++|+ +|..+
T Consensus 876 L~~C~~L~-~l~----~~~~~L~~L~~L~l~~C~-~L~~~ 909 (1153)
T PLN03210 876 MNGCNNLQ-RVS----LNISKLKHLETVDFSDCG-ALTEA 909 (1153)
T ss_pred CCCCCCcC-ccC----cccccccCCCeeecCCCc-ccccc
Confidence 67777777 552 335667888888888887 35544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.8e-21 Score=199.12 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=54.9
Q ss_pred ccccceeeeecccceeeeccc------cccceEEEeecCCCccchHHHHHhccccceEEEE---EE----eccccccccc
Q 040040 622 FPNLEELTLSKYIFTTWRQAQ------FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK---VE----EHAEGIAQIK 688 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~---~~----~~~~~~~~L~ 688 (869)
+.+|+.|+++.|.+.....+. +++|+.|++.+|....+|...+.++++||.|++. +- +.++.+ .|+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 688999999999888755433 7888999998888899999889999999999987 11 222233 777
Q ss_pred EEEcCc
Q 040040 689 SLKLNK 694 (869)
Q Consensus 689 ~L~l~~ 694 (869)
+|.+.+
T Consensus 443 ~Lv~nS 448 (873)
T KOG4194|consen 443 ELVMNS 448 (873)
T ss_pred hhhhcc
Confidence 777665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3.6e-20 Score=193.28 Aligned_cols=356 Identities=20% Similarity=0.235 Sum_probs=213.9
Q ss_pred CcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccccccccccc
Q 040040 287 NLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEE 366 (869)
Q Consensus 287 ~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~ 366 (869)
.-+.|++++|.+..+... .+..+++|+.+++.. +.++.+ | ...+...+|+.|++.+ +.+..+-..
T Consensus 79 ~t~~LdlsnNkl~~id~~----~f~nl~nLq~v~l~~-N~Lt~I-P-~f~~~sghl~~L~L~~-N~I~sv~se------- 143 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFE----FFYNLPNLQEVNLNK-NELTRI-P-RFGHESGHLEKLDLRH-NLISSVTSE------- 143 (873)
T ss_pred ceeeeeccccccccCcHH----HHhcCCcceeeeecc-chhhhc-c-cccccccceeEEeeec-cccccccHH-------
Confidence 445566666665443222 123366666666655 455554 3 2122334567777666 344443222
Q ss_pred ccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEe
Q 040040 367 RKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVI 446 (869)
Q Consensus 367 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 446 (869)
....+|.|++|+++... +..++...+..-+++++|++.+ +.++.+..+.+ ..+.+|..|.++
T Consensus 144 -~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F---------------~~lnsL~tlkLs 205 (873)
T KOG4194|consen 144 -ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHF---------------DSLNSLLTLKLS 205 (873)
T ss_pred -HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecc-ccccccccccc---------------cccchheeeecc
Confidence 34466777777776643 5555544333334677777755 34444332211 226678888888
Q ss_pred ccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCC
Q 040040 447 FCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPN 526 (869)
Q Consensus 447 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~ 526 (869)
++. ++. +|...+.+++.|+.|++.. +.++.+- +.....+++|+.|.+.. +++..+ +...+..+.+
T Consensus 206 rNr-itt-Lp~r~Fk~L~~L~~LdLnr-N~irive--------~ltFqgL~Sl~nlklqr-N~I~kL---~DG~Fy~l~k 270 (873)
T KOG4194|consen 206 RNR-ITT-LPQRSFKRLPKLESLDLNR-NRIRIVE--------GLTFQGLPSLQNLKLQR-NDISKL---DDGAFYGLEK 270 (873)
T ss_pred cCc-ccc-cCHHHhhhcchhhhhhccc-cceeeeh--------hhhhcCchhhhhhhhhh-cCcccc---cCcceeeecc
Confidence 765 432 5888888899999999987 5555441 11114677888888876 345545 3456777888
Q ss_pred ccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeeccccCccc
Q 040040 527 LVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQLKNPSFG 606 (869)
Q Consensus 527 L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~l~~~~ 606 (869)
+++|++.. +++..+--.++ +.+++|+.|++++. .+..+.
T Consensus 271 me~l~L~~-N~l~~vn~g~l---------------fgLt~L~~L~lS~N-------------------------aI~rih 309 (873)
T KOG4194|consen 271 MEHLNLET-NRLQAVNEGWL---------------FGLTSLEQLDLSYN-------------------------AIQRIH 309 (873)
T ss_pred cceeeccc-chhhhhhcccc---------------cccchhhhhccchh-------------------------hhheee
Confidence 88888875 66666511111 23455555555542 333222
Q ss_pred cccceeeEeeecceeccccceeeeecccceeeeccc---cccceEEEeecCCCccchHHHHHhccccceEEEE-------
Q 040040 607 SKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK------- 676 (869)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~------- 676 (869)
..... ..++|++|+++.|.+....++. ++.|+.|.++.|....+-...+..+.+|++|+++
T Consensus 310 ~d~Ws---------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 310 IDSWS---------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred cchhh---------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence 11100 2467777777777777766655 5667777777777777777778888888888887
Q ss_pred EEe---cccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhccc-ceeEecccchhcccc
Q 040040 677 VEE---HAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLR-IEIVFSKLKWLFLES 747 (869)
Q Consensus 677 ~~~---~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~-~~~~~~~L~~L~l~~ 747 (869)
+++ .+.++++|+.|++.+ ++++ .+.+.. ...|.+||.|++.+|. +.++- +......|++|.+..
T Consensus 381 IEDaa~~f~gl~~LrkL~l~g-Nqlk-~I~krA---fsgl~~LE~LdL~~Na--iaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTG-NQLK-SIPKRA---FSGLEALEHLDLGDNA--IASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred EecchhhhccchhhhheeecC-ceee-ecchhh---hccCcccceecCCCCc--ceeecccccccchhhhhhhcc
Confidence 333 234599999999998 5677 775544 4578999999999997 66653 333344666666554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=1.2e-20 Score=188.46 Aligned_cols=177 Identities=21% Similarity=0.195 Sum_probs=109.8
Q ss_pred CccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCC
Q 040040 174 LLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINN 253 (869)
Q Consensus 174 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 253 (869)
-|+.|.++.+ +++.+... ...+..|.+|++.+. ++..+|+ .++.+..++.|+++.. ++.++|
T Consensus 46 ~l~~lils~N-~l~~l~~d---l~nL~~l~vl~~~~n-~l~~lp~--aig~l~~l~~l~vs~n-~ls~lp---------- 107 (565)
T KOG0472|consen 46 DLQKLILSHN-DLEVLRED---LKNLACLTVLNVHDN-KLSQLPA--AIGELEALKSLNVSHN-KLSELP---------- 107 (565)
T ss_pred chhhhhhccC-chhhccHh---hhcccceeEEEeccc-hhhhCCH--HHHHHHHHHHhhcccc-hHhhcc----------
Confidence 3555556555 33333322 345666777777766 3556654 6777777777777763 355666
Q ss_pred ccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccCh
Q 040040 254 TEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFST 333 (869)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 333 (869)
.++..+.+|++++++...-.+-.+.++.+-.|+.|+-.+|++.. .|..++.+.+|..+.+.+ ++++.+ |+
T Consensus 108 ---~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s-----lp~~~~~~~~l~~l~~~~-n~l~~l-~~ 177 (565)
T KOG0472|consen 108 ---EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISS-----LPEDMVNLSKLSKLDLEG-NKLKAL-PE 177 (565)
T ss_pred ---HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccccccc-----CchHHHHHHHHHHhhccc-cchhhC-CH
Confidence 45556667777777664433334445666777777777776444 444456677888888877 566766 44
Q ss_pred hhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccC
Q 040040 334 SLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFC 390 (869)
Q Consensus 334 ~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 390 (869)
..+. ++.|++|+... +.++.++.. .+.+.+|+-|++.... +..+|
T Consensus 178 ~~i~-m~~L~~ld~~~-N~L~tlP~~---------lg~l~~L~~LyL~~Nk-i~~lP 222 (565)
T KOG0472|consen 178 NHIA-MKRLKHLDCNS-NLLETLPPE---------LGGLESLELLYLRRNK-IRFLP 222 (565)
T ss_pred HHHH-HHHHHhcccch-hhhhcCChh---------hcchhhhHHHHhhhcc-cccCC
Confidence 4344 88888888765 356655543 5567777777777654 55555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=6.2e-21 Score=190.48 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=25.9
Q ss_pred cccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhh
Q 040040 684 IAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLI 729 (869)
Q Consensus 684 ~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~ 729 (869)
+.+|+.|++.+ ..++ .+ |+.+++++||++|++++|+ +.
T Consensus 504 m~nL~tLDL~n-Ndlq-~I----Pp~LgnmtnL~hLeL~gNp--fr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQ-QI----PPILGNMTNLRHLELDGNP--FR 541 (565)
T ss_pred hhhcceeccCC-Cchh-hC----ChhhccccceeEEEecCCc--cC
Confidence 34455555555 3455 33 5678899999999999997 55
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-18 Score=191.76 Aligned_cols=253 Identities=19% Similarity=0.162 Sum_probs=129.0
Q ss_pred cccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeeccccccccccccc
Q 040040 437 FCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNK 516 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 516 (869)
+.+|++++++.+. +.. +| .+...+.+|+.+.+.+ +.+..++. .+ ...++|+.|.+..| .++++
T Consensus 240 p~nl~~~dis~n~-l~~-lp-~wi~~~~nle~l~~n~-N~l~~lp~-------ri--~~~~~L~~l~~~~n-el~yi--- 302 (1081)
T KOG0618|consen 240 PLNLQYLDISHNN-LSN-LP-EWIGACANLEALNANH-NRLVALPL-------RI--SRITSLVSLSAAYN-ELEYI--- 302 (1081)
T ss_pred cccceeeecchhh-hhc-ch-HHHHhcccceEecccc-hhHHhhHH-------HH--hhhhhHHHHHhhhh-hhhhC---
Confidence 5778888887764 443 46 4556788888888887 55555543 12 25677888888774 57777
Q ss_pred CCCCcccCCCccEEEEecCCCcccccCccEEEEEec--------cCCCC---CcceeeccccceEeecCCCCCceecCCC
Q 040040 517 DPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVAND--------VRGND---AATKFIFPSLTFLKLRDLPYLTTFYSGM 585 (869)
Q Consensus 517 ~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~--------~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 585 (869)
|.....+.+|++|++.. ++|..+ |..+.-+... ....+ ......++.|+.|.+.+...-....+-.
T Consensus 303 -p~~le~~~sL~tLdL~~-N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 303 -PPFLEGLKSLRTLDLQS-NNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred -CCcccccceeeeeeehh-cccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 67777788888888886 677776 5432000000 00000 0001123444444444432222211111
Q ss_pred CCCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccc--cccceEEEeecCCCccchHH
Q 040040 586 HTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ--FHKLKILHFISDGSDFFQVG 662 (869)
Q Consensus 586 ~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~p~~ 662 (869)
.. ...|+.|++++ .+.+||..... .+..|++|+++||.+..++... +..|++|..++|....+|
T Consensus 380 ~~--~~hLKVLhLsyNrL~~fpas~~~---------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-- 446 (1081)
T KOG0618|consen 380 VN--FKHLKVLHLSYNRLNSFPASKLR---------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-- 446 (1081)
T ss_pred cc--ccceeeeeecccccccCCHHHHh---------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--
Confidence 22 24555555555 55555543211 2445555566666555554322 445555555555555555
Q ss_pred HHHhccccceEEEEEEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccch
Q 040040 663 LLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKW 742 (869)
Q Consensus 663 ~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~ 742 (869)
-+..+ ++|+.+|++. .+|+ .+.... .... ++|++||+++|.. ++ -+...|+.++.
T Consensus 447 e~~~l-----------------~qL~~lDlS~-N~L~-~~~l~~--~~p~-p~LkyLdlSGN~~-l~--~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 447 ELAQL-----------------PQLKVLDLSC-NNLS-EVTLPE--ALPS-PNLKYLDLSGNTR-LV--FDHKTLKVLKS 501 (1081)
T ss_pred hhhhc-----------------CcceEEeccc-chhh-hhhhhh--hCCC-cccceeeccCCcc-cc--cchhhhHHhhh
Confidence 23444 4555555543 3344 221110 0011 6788888887762 11 12334555555
Q ss_pred hcccc
Q 040040 743 LFLES 747 (869)
Q Consensus 743 L~l~~ 747 (869)
+...+
T Consensus 502 l~~~~ 506 (1081)
T KOG0618|consen 502 LSQMD 506 (1081)
T ss_pred hhhee
Confidence 44443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=1e-18 Score=183.47 Aligned_cols=227 Identities=19% Similarity=0.210 Sum_probs=161.2
Q ss_pred hccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccc--cccccc
Q 040040 117 LKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEK--ISCSQL 194 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~~~~ 194 (869)
+..++-|.+.+ .++..++.++ ..+.+|++|.+.++ .+..+.... ..+|.|+.+++.++ +++. +|..
T Consensus 31 Mt~~~WLkLnr-t~L~~vPeEL--~~lqkLEHLs~~HN-~L~~vhGEL-----s~Lp~LRsv~~R~N-~LKnsGiP~d-- 98 (1255)
T KOG0444|consen 31 MTQMTWLKLNR-TKLEQVPEEL--SRLQKLEHLSMAHN-QLISVHGEL-----SDLPRLRSVIVRDN-NLKNSGIPTD-- 98 (1255)
T ss_pred hhheeEEEech-hhhhhChHHH--HHHhhhhhhhhhhh-hhHhhhhhh-----ccchhhHHHhhhcc-ccccCCCCch--
Confidence 45566677765 5566677777 67888888888887 566665443 57888888888876 5543 4544
Q ss_pred cccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCC
Q 040040 195 RAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLP 274 (869)
Q Consensus 195 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 274 (869)
+-.+..|..|+|+++ +++..|. .+..-.++-+|++++. +++.+|.. -..+++.|-.|++++ +
T Consensus 99 -iF~l~dLt~lDLShN-qL~EvP~--~LE~AKn~iVLNLS~N-~IetIPn~------------lfinLtDLLfLDLS~-N 160 (1255)
T KOG0444|consen 99 -IFRLKDLTILDLSHN-QLREVPT--NLEYAKNSIVLNLSYN-NIETIPNS------------LFINLTDLLFLDLSN-N 160 (1255)
T ss_pred -hcccccceeeecchh-hhhhcch--hhhhhcCcEEEEcccC-ccccCCch------------HHHhhHhHhhhcccc-c
Confidence 457888888999888 5888865 6777888889999874 47777722 234577777888877 4
Q ss_pred Ccccccc-cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccc
Q 040040 275 QLRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDL 353 (869)
Q Consensus 275 ~l~~~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l 353 (869)
++..+|. ...+.+|++|+|++|.+...-..++|+ +++|+.|.+++-+.-..-+|.+ +..+.+|..++++. +++
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~-N~L 234 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSE-NNL 234 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCc-hhhhhhhhhccccc-cCC
Confidence 5666654 567788999999999876666667777 8889999888865433334544 67788899888886 566
Q ss_pred cccccccccccccccccccCccceeecccCcccccc
Q 040040 354 EGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRF 389 (869)
Q Consensus 354 ~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l 389 (869)
..++.. +..+++|+.|++++.. ++.+
T Consensus 235 p~vPec---------ly~l~~LrrLNLS~N~-iteL 260 (1255)
T KOG0444|consen 235 PIVPEC---------LYKLRNLRRLNLSGNK-ITEL 260 (1255)
T ss_pred CcchHH---------HhhhhhhheeccCcCc-eeee
Confidence 665432 4567888888888765 5544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=2.6e-18 Score=180.49 Aligned_cols=367 Identities=17% Similarity=0.239 Sum_probs=266.8
Q ss_pred CCCCCccEeecccccccc--ccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccc
Q 040040 170 DAFPLLESLSLSNLMNLE--KISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGR 247 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~--~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~ 247 (869)
+.+|..+-.+++++. ++ ..|.. ...+..++.|.|... ++..+|. .++.+.+|++|.+.... +..+.
T Consensus 4 gVLpFVrGvDfsgND-Fsg~~FP~~---v~qMt~~~WLkLnrt-~L~~vPe--EL~~lqkLEHLs~~HN~-L~~vh---- 71 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGND-FSGDRFPHD---VEQMTQMTWLKLNRT-KLEQVPE--ELSRLQKLEHLSMAHNQ-LISVH---- 71 (1255)
T ss_pred cccceeecccccCCc-CCCCcCchh---HHHhhheeEEEechh-hhhhChH--HHHHHhhhhhhhhhhhh-hHhhh----
Confidence 456777888888873 33 23333 456889999999887 5888875 89999999999998754 54444
Q ss_pred ccccCCccccccccCCcccEEeccCCCCccc---ccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecC
Q 040040 248 EDDINNTEVIDKIEFSQLRKLTLKSLPQLRS---FCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGC 324 (869)
Q Consensus 248 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~---~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c 324 (869)
-++..++.||.+.++.. +++. .+.+..+..|..|+|+.|.+.++ |..+..-+++-.|++++
T Consensus 72 ---------GELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-----P~~LE~AKn~iVLNLS~- 135 (1255)
T KOG0444|consen 72 ---------GELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREV-----PTNLEYAKNSIVLNLSY- 135 (1255)
T ss_pred ---------hhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhc-----chhhhhhcCcEEEEccc-
Confidence 35566889999888763 3332 23467788999999999987664 44445567889999988
Q ss_pred CCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEE
Q 040040 325 NNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLR 404 (869)
Q Consensus 325 ~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~ 404 (869)
+++..+ |.+.+-+|+.|-.|++++ +.++.++.. ...+..|++|.+++.| |.-+.......+++|+.|+
T Consensus 136 N~IetI-Pn~lfinLtDLLfLDLS~-NrLe~LPPQ---------~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 136 NNIETI-PNSLFINLTDLLFLDLSN-NRLEMLPPQ---------IRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred CccccC-CchHHHhhHhHhhhcccc-chhhhcCHH---------HHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhh
Confidence 577776 777788999999999998 578877654 5678899999999988 3332222222356677777
Q ss_pred EccCCc-cccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccc
Q 040040 405 MAKCPE-LKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNL 483 (869)
Q Consensus 405 l~~c~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~ 483 (869)
+++-.. +..+|. + ...+.+|..++++.+ .+.. .|.... .+++|+.|++++ +.++++...
T Consensus 204 ms~TqRTl~N~Pt-----s-----------ld~l~NL~dvDlS~N-~Lp~-vPecly-~l~~LrrLNLS~-N~iteL~~~ 263 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPT-----S-----------LDDLHNLRDVDLSEN-NLPI-VPECLY-KLRNLRRLNLSG-NKITELNMT 263 (1255)
T ss_pred cccccchhhcCCC-----c-----------hhhhhhhhhcccccc-CCCc-chHHHh-hhhhhheeccCc-Cceeeeecc
Confidence 766322 111221 1 133789999999755 4653 466544 789999999999 777766332
Q ss_pred cccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCc--ccccCccEEEEEeccCCCCCcce
Q 040040 484 QELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRL--KSIFPTSVEIVANDVRGNDAATK 561 (869)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L--~~l~p~s~ei~~~~~~~~~~~~~ 561 (869)
. +.-.+|++|+++. ++|+.+ |..+..+++|+.|.+.+ ++| +.+ |+++
T Consensus 264 ~---------~~W~~lEtLNlSr-NQLt~L----P~avcKL~kL~kLy~n~-NkL~FeGi-PSGI--------------- 312 (1255)
T KOG0444|consen 264 E---------GEWENLETLNLSR-NQLTVL----PDAVCKLTKLTKLYANN-NKLTFEGI-PSGI--------------- 312 (1255)
T ss_pred H---------HHHhhhhhhcccc-chhccc----hHHHhhhHHHHHHHhcc-CcccccCC-ccch---------------
Confidence 2 2556899999998 678888 99999999999999986 555 455 8766
Q ss_pred eeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeec
Q 040040 562 FIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQ 640 (869)
Q Consensus 562 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 640 (869)
+.+.+|+.+...+. +|+-.|.+.+ +|+.|+.|.+.. .+-++|... ..++.|+.|++..|.....+|
T Consensus 313 GKL~~Levf~aanN-~LElVPEglc--RC~kL~kL~L~~NrLiTLPeaI----------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANN-KLELVPEGLC--RCVKLQKLKLDHNRLITLPEAI----------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhHHHHhhcc-ccccCchhhh--hhHHHHHhcccccceeechhhh----------hhcCCcceeeccCCcCccCCC
Confidence 45778888877763 5666777765 479999999999 888888754 247999999999998877665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=3.1e-18 Score=188.80 Aligned_cols=258 Identities=20% Similarity=0.205 Sum_probs=177.3
Q ss_pred ccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccC
Q 040040 438 CKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKD 517 (869)
Q Consensus 438 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 517 (869)
++|+.|+...|...+ ..+. ..-.+|++++++. +.+..+|++. +.+.+|+.+.+.. ..|..+
T Consensus 219 ~~l~~L~a~~n~l~~-~~~~---p~p~nl~~~dis~-n~l~~lp~wi---------~~~~nle~l~~n~-N~l~~l---- 279 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT-LDVH---PVPLNLQYLDISH-NNLSNLPEWI---------GACANLEALNANH-NRLVAL---- 279 (1081)
T ss_pred cchheeeeccCccee-eccc---cccccceeeecch-hhhhcchHHH---------HhcccceEecccc-hhHHhh----
Confidence 778888888776442 2222 2346899999998 6777776543 3788899999887 566777
Q ss_pred CCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceee
Q 040040 518 PRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLI 597 (869)
Q Consensus 518 p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 597 (869)
|..+...++|+.|.+.. +.++.+ |.-. ..+.+|++|++... ++.+++.......-.++..+.
T Consensus 280 p~ri~~~~~L~~l~~~~-nel~yi-p~~l---------------e~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAY-NELEYI-PPFL---------------EGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred HHHHhhhhhHHHHHhhh-hhhhhC-CCcc---------------cccceeeeeeehhc-cccccchHHHhhhhHHHHHHh
Confidence 78888899999999987 578887 4311 12688999999864 455555532222112355566
Q ss_pred ecc-ccCccccccceeeEeeecceeccccceeeeeccccee-eec--cccccceEEEeecCCCccchHHHHHhccccceE
Q 040040 598 FQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTT-WRQ--AQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL 673 (869)
Q Consensus 598 l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L 673 (869)
.+. ++...+... +...+.|+.|++.+|.+.. .++ ..+.+|+.|++++|..+.||...+.++..||.|
T Consensus 342 ~s~n~l~~lp~~~---------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYE---------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred hhhcccccccccc---------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 665 666665432 1247889999999999876 333 338999999999999999999999999999999
Q ss_pred EEE------EEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhccc-ceeEe-cccchhcc
Q 040040 674 VLK------VEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLR-IEIVF-SKLKWLFL 745 (869)
Q Consensus 674 ~l~------~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~-~~~~~-~~L~~L~l 745 (869)
+++ +.+....+..|+.|...++ .|. ++ +.+..++.|+.+|++.|. |..+. .+..+ +.|+.|++
T Consensus 413 ~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~-~f-----Pe~~~l~qL~~lDlS~N~--L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 413 NLSGNKLTTLPDTVANLGRLHTLRAHSN-QLL-SF-----PELAQLPQLKVLDLSCNN--LSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred hcccchhhhhhHHHHhhhhhHHHhhcCC-cee-ec-----hhhhhcCcceEEecccch--hhhhhhhhhCCCcccceeec
Confidence 987 2222333677777777663 233 33 346788888888888886 44331 12234 67777777
Q ss_pred ccCCC
Q 040040 746 ESSGS 750 (869)
Q Consensus 746 ~~l~~ 750 (869)
.+..+
T Consensus 484 SGN~~ 488 (1081)
T KOG0618|consen 484 SGNTR 488 (1081)
T ss_pred cCCcc
Confidence 76554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=1e-11 Score=142.61 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=52.4
Q ss_pred ccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccC
Q 040040 438 CKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKD 517 (869)
Q Consensus 438 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 517 (869)
++|+.|++++|. +.. +|. ..++|+.|++++ +.+..+|. .+.+|+.|++++ .+++.+
T Consensus 382 ~~L~~LdLs~N~-Lt~-LP~----l~s~L~~LdLS~-N~LssIP~------------l~~~L~~L~Ls~-NqLt~L---- 437 (788)
T PRK15387 382 SGLKELIVSGNR-LTS-LPV----LPSELKELMVSG-NRLTSLPM------------LPSGLLSLSVYR-NQLTRL---- 437 (788)
T ss_pred cccceEEecCCc-ccC-CCC----cccCCCEEEccC-CcCCCCCc------------chhhhhhhhhcc-Cccccc----
Confidence 567777777654 443 343 135788888888 45666653 345678888877 457777
Q ss_pred CCCcccCCCccEEEEecCCCccc
Q 040040 518 PRGKLIFPNLVLVRIFECQRLKS 540 (869)
Q Consensus 518 p~~~~~l~~L~~L~l~~c~~L~~ 540 (869)
|..+..+++|+.|+++++ .+..
T Consensus 438 P~sl~~L~~L~~LdLs~N-~Ls~ 459 (788)
T PRK15387 438 PESLIHLSSETTVNLEGN-PLSE 459 (788)
T ss_pred ChHHhhccCCCeEECCCC-CCCc
Confidence 777888888888888874 4543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=4.7e-12 Score=145.40 Aligned_cols=169 Identities=20% Similarity=0.131 Sum_probs=116.7
Q ss_pred ccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccC
Q 040040 438 CKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKD 517 (869)
Q Consensus 438 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 517 (869)
..-..|+++++ .++. +|.... ++|+.|++.+ +.++.+|. .+++|++|+++++ +|+.+
T Consensus 201 ~~~~~LdLs~~-~Lts-LP~~l~---~~L~~L~L~~-N~Lt~LP~------------lp~~Lk~LdLs~N-~LtsL---- 257 (788)
T PRK15387 201 NGNAVLNVGES-GLTT-LPDCLP---AHITTLVIPD-NNLTSLPA------------LPPELRTLEVSGN-QLTSL---- 257 (788)
T ss_pred CCCcEEEcCCC-CCCc-CCcchh---cCCCEEEccC-CcCCCCCC------------CCCCCcEEEecCC-ccCcc----
Confidence 34567888877 4554 576442 5789999988 67777764 5688999999884 77777
Q ss_pred CCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceee
Q 040040 518 PRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLI 597 (869)
Q Consensus 518 p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 597 (869)
|.. .++|++|+++++ .+..+ |. .+++|+.|+++++ .++.++.. .++|+.|+
T Consensus 258 P~l---p~sL~~L~Ls~N-~L~~L-p~------------------lp~~L~~L~Ls~N-~Lt~LP~~-----p~~L~~Ld 308 (788)
T PRK15387 258 PVL---PPGLLELSIFSN-PLTHL-PA------------------LPSGLCKLWIFGN-QLTSLPVL-----PPGLQELS 308 (788)
T ss_pred cCc---ccccceeeccCC-chhhh-hh------------------chhhcCEEECcCC-cccccccc-----ccccceeE
Confidence 432 468889999874 57766 53 1467888888886 45555442 27889999
Q ss_pred ecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEEE
Q 040040 598 FQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK 676 (869)
Q Consensus 598 l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~ 676 (869)
+++ ++..++. .+.+|+.|++++|.+..++. ...+|+.|++++|....+|.. .++|+.|+++
T Consensus 309 LS~N~L~~Lp~-------------lp~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls 370 (788)
T PRK15387 309 VSDNQLASLPA-------------LPSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASLPTL----PSELYKLWAY 370 (788)
T ss_pred CCCCccccCCC-------------CcccccccccccCccccccc-cccccceEecCCCccCCCCCC----Ccccceehhh
Confidence 988 7777665 24678888898888876543 345788888876766666632 2345555443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=4.8e-13 Score=134.53 Aligned_cols=365 Identities=16% Similarity=0.186 Sum_probs=187.5
Q ss_pred cccEEeccCCCCcccccc--cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCC
Q 040040 264 QLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQ 341 (869)
Q Consensus 264 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 341 (869)
.-..+++.. +.++++|. ...+++|+.|+|++|.|+.|..+.|.. +.+|.+|.+.+.++++++ |...+++|..
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G----L~~l~~Lvlyg~NkI~~l-~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG----LASLLSLVLYGNNKITDL-PKGAFGGLSS 141 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhh----hHhhhHHHhhcCCchhhh-hhhHhhhHHH
Confidence 334455543 45666664 467789999999999988887666655 888888888888889987 7788888888
Q ss_pred ccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCC--------cccc
Q 040040 342 LQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCP--------ELKA 413 (869)
Q Consensus 342 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~--------~l~~ 413 (869)
|+.|.+.-+ .+..+... ....+++|..|.+.+.. ++.++.+.+..+.+++.+.+..-+ .+.+
T Consensus 142 lqrLllNan-~i~Cir~~--------al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQD--------ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred HHHHhcChh-hhcchhHH--------HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 888887653 34333221 23456777777777754 677776666666666666554322 1111
Q ss_pred ccccccCCCceEeeee------------ccCccc-ccccccEE---EEeccCCcccccchhHHhhcCCccEEEEcccCCc
Q 040040 414 FILQNINTDMTVVGIQ------------SFFNEK-SFCKLKLM---EVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSL 477 (869)
Q Consensus 414 l~~~~~~~~~~~~~~~------------~~~~~~-~~~~L~~L---~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 477 (869)
.-.. ......+.. ++.+.. ....++.+ --+.| ....+.|...++.+++|++|++++ +.+
T Consensus 212 ~~a~---~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsn-N~i 286 (498)
T KOG4237|consen 212 DLAM---NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSN-NKI 286 (498)
T ss_pred HHhh---chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCC-Ccc
Confidence 0000 000000000 011110 01112221 11122 122234555566666666666665 445
Q ss_pred cccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccCccE---------EE
Q 040040 478 EEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSV---------EI 548 (869)
Q Consensus 478 ~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~---------ei 548 (869)
+.|-+... .....++.|.+.. .+++.+. ...+..+..|+.|++++ ++++.+-|-++ .+
T Consensus 287 ~~i~~~aF--------e~~a~l~eL~L~~-N~l~~v~---~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 287 TRIEDGAF--------EGAAELQELYLTR-NKLEFVS---SGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred chhhhhhh--------cchhhhhhhhcCc-chHHHHH---HHhhhccccceeeeecC-CeeEEEecccccccceeeeeeh
Confidence 44422100 2334455555544 3444441 12344455555555554 44444423211 00
Q ss_pred EEe---------------ccCCCCCc-ceeeccccceEeecCCCCCcee----------cCCCCCCCCCCCceee-ecc-
Q 040040 549 VAN---------------DVRGNDAA-TKFIFPSLTFLKLRDLPYLTTF----------YSGMHTLECPERANLI-FQL- 600 (869)
Q Consensus 549 ~~~---------------~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~----------~~~~~~~~~~~L~~L~-l~~- 600 (869)
++. ...+.... +-..+-.++.+.+++.+.=..- ..+.....|+.+.++. .++
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk 433 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNK 433 (498)
T ss_pred ccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhccc
Confidence 000 00000000 0011223444444432211111 1111122334443332 222
Q ss_pred ccCccccccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEE
Q 040040 601 KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVL 675 (869)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l 675 (869)
.++.+|.+. +..-.+|++.+|.+..++...++.| .+|+++|....+....+.+++.|.+|.+
T Consensus 434 ~lk~lp~~i------------P~d~telyl~gn~~~~vp~~~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlil 495 (498)
T KOG4237|consen 434 LLKLLPRGI------------PVDVTELYLDGNAITSVPDELLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLIL 495 (498)
T ss_pred chhhcCCCC------------CchhHHHhcccchhcccCHHHHhhh-hcccccCceehhhcccccchhhhheeEE
Confidence 445555543 5678889999999988888778888 8888888777766666667776666654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=4.7e-11 Score=138.22 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=41.4
Q ss_pred CCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCc
Q 040040 314 QNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGN 393 (869)
Q Consensus 314 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 393 (869)
.+...|++++. +++.+ |... .++|+.|+++++ .++.++.. .+++|+.|+++++. ++++|...
T Consensus 178 ~~~~~L~L~~~-~LtsL-P~~I---p~~L~~L~Ls~N-~LtsLP~~-----------l~~nL~~L~Ls~N~-LtsLP~~l 239 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI-PACI---PEQITTLILDNN-ELKSLPEN-----------LQGNIKTLYANSNQ-LTSIPATL 239 (754)
T ss_pred cCceEEEeCCC-CcCcC-Cccc---ccCCcEEEecCC-CCCcCChh-----------hccCCCEEECCCCc-cccCChhh
Confidence 35677888774 56665 4322 357888888774 56655322 34577777777654 55554321
Q ss_pred ccCCCCccEEEEcc
Q 040040 394 CIELPSLKQLRMAK 407 (869)
Q Consensus 394 ~~~l~~L~~L~l~~ 407 (869)
.++|+.|++++
T Consensus 240 ---~~~L~~L~Ls~ 250 (754)
T PRK15370 240 ---PDTIQEMELSI 250 (754)
T ss_pred ---hccccEEECcC
Confidence 22455555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=4.7e-11 Score=138.28 Aligned_cols=248 Identities=16% Similarity=0.159 Sum_probs=127.4
Q ss_pred CccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcc
Q 040040 373 PQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLW 452 (869)
Q Consensus 373 ~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 452 (869)
.+...|++++.. ++++|.. -.+.|+.|++.+ .+++.+|.. .+.+|+.|++++|. ++
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~---Ip~~L~~L~Ls~-N~LtsLP~~------------------l~~nL~~L~Ls~N~-Lt 233 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPAC---IPEQITTLILDN-NELKSLPEN------------------LQGNIKTLYANSNQ-LT 233 (754)
T ss_pred cCceEEEeCCCC-cCcCCcc---cccCCcEEEecC-CCCCcCChh------------------hccCCCEEECCCCc-cc
Confidence 345667777653 6666542 144677777754 355555431 13567777776553 44
Q ss_pred cccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEE
Q 040040 453 TIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRI 532 (869)
Q Consensus 453 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l 532 (869)
. +|... .++|+.|++++| .+..+|. ..+.+|+.|++++ .+++.+ |..+. ++|+.|++
T Consensus 234 s-LP~~l---~~~L~~L~Ls~N-~L~~LP~-----------~l~s~L~~L~Ls~-N~L~~L----P~~l~--~sL~~L~L 290 (754)
T PRK15370 234 S-IPATL---PDTIQEMELSIN-RITELPE-----------RLPSALQSLDLFH-NKISCL----PENLP--EELRYLSV 290 (754)
T ss_pred c-CChhh---hccccEEECcCC-ccCcCCh-----------hHhCCCCEEECcC-CccCcc----ccccC--CCCcEEEC
Confidence 3 34422 245667777663 3444433 1334666666664 355555 43332 46666666
Q ss_pred ecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccce
Q 040040 533 FECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLV 611 (869)
Q Consensus 533 ~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~ 611 (869)
++| +++.+ |..+ +++|+.|+++++. +..++... .++|+.|++++ .+..+|..
T Consensus 291 s~N-~Lt~L-P~~l-----------------p~sL~~L~Ls~N~-Lt~LP~~l----~~sL~~L~Ls~N~Lt~LP~~--- 343 (754)
T PRK15370 291 YDN-SIRTL-PAHL-----------------PSGITHLNVQSNS-LTALPETL----PPGLKTLEAGENALTSLPAS--- 343 (754)
T ss_pred CCC-ccccC-cccc-----------------hhhHHHHHhcCCc-cccCCccc----cccceeccccCCccccCChh---
Confidence 653 55554 4322 3456666666543 33333221 14566666666 55555432
Q ss_pred eeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccccEEE
Q 040040 612 MLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLK 691 (869)
Q Consensus 612 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~ 691 (869)
.+++|+.|++++|.+..++....++|+.|++.+|....+|..+ ..+|+.|+
T Consensus 344 ---------l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l--------------------~~sL~~Ld 394 (754)
T PRK15370 344 ---------LPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENL--------------------PAALQIMQ 394 (754)
T ss_pred ---------hcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhH--------------------HHHHHHHh
Confidence 1356666666666655443333455666666444444445332 12455555
Q ss_pred cCccccccccccCCCCCcccccCCccEEEEeccc
Q 040040 692 LNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECA 725 (869)
Q Consensus 692 l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~ 725 (869)
++++ .++ .++...+.....++++..|++.+|+
T Consensus 395 Ls~N-~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 395 ASRN-NLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hccC-Ccc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 5553 344 3322212222345677788888886
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.97 E-value=1.1e-11 Score=125.99 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDIN 252 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 252 (869)
..|+.|.+.+|.....-+...+ ...++++.+|.+.+|.++++..-.+....+++|++|++..|..+.......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~-~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF-ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------ 210 (483)
T ss_pred cccccccccccccCCcchhhHH-hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------
Confidence 3577777777754433222222 235777777777777766654333344566777777777776654433110
Q ss_pred CccccccccCCcccEEeccCCCCccc
Q 040040 253 NTEVIDKIEFSQLRKLTLKSLPQLRS 278 (869)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~l~~ 278 (869)
-...+++|++|+++.|+.+..
T Consensus 211 -----la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 211 -----LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred -----HHHhhhhHHHhhhccCchhhc
Confidence 112366666666666665443
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=1.4e-11 Score=125.40 Aligned_cols=319 Identities=17% Similarity=0.186 Sum_probs=176.1
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
..||.|.+.++.....-+ .......+|+++.|.+.+|.++++.....+. ..+++|++|++..|..+++..-.....
T Consensus 138 g~lk~LSlrG~r~v~~ss---lrt~~~~CpnIehL~l~gc~~iTd~s~~sla-~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSS---LRTFASNCPNIEHLALYGCKKITDSSLLSLA-RYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcch---hhHHhhhCCchhhhhhhcceeccHHHHHHHH-HhcchhhhhhhcccchhHHHHHHHHHH
Confidence 356667776664332111 0011245677777777777666554332221 357777777777777776653322455
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc--cc-ccccCCCcCEEEecccc-cc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FC-SVVAFPNLETLKLSAIN-SE 299 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~-~~~~l~~L~~L~L~~~~-l~ 299 (869)
++++|++|+++.|+.++.-- .. .-..+...++.+...||..+.. +- .....+-+.++++..|. ++
T Consensus 214 gC~kL~~lNlSwc~qi~~~g---v~--------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNG---VQ--------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hhhhHHHhhhccCchhhcCc---ch--------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 67777777777777655410 00 0011233355555555544321 10 01122334455555554 22
Q ss_pred ccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceee
Q 040040 300 TIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLK 379 (869)
Q Consensus 300 ~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~ 379 (869)
. ...-.+...+..|+.|..++|..+++..-.....+.++|+.|.+.+|..+...-... -....+.|+.++
T Consensus 283 D---~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-------l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 283 D---EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-------LGRNCPHLERLD 352 (483)
T ss_pred c---hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-------hhcCChhhhhhc
Confidence 1 111111233667888888888877765333334567888888888887765532210 023567788888
Q ss_pred cccCccccccC-CCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchh
Q 040040 380 MKDLAKLTRFC-SGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHN 458 (869)
Q Consensus 380 l~~~~~L~~l~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 458 (869)
+.+|.....-. ......+|.|+++.++.|..++......+. ........|..+.+.+|+.+.+. ...
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~-----------~~~c~~~~l~~lEL~n~p~i~d~-~Le 420 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS-----------SSSCSLEGLEVLELDNCPLITDA-TLE 420 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh-----------hccccccccceeeecCCCCchHH-HHH
Confidence 88776433321 111245788888888888777654211100 01133577888999999877654 233
Q ss_pred HHhhcCCccEEEEcccCCccccccccccCccccccccccccceeeccc
Q 040040 459 MFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFC 506 (869)
Q Consensus 459 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (869)
.+..+++|+.+++.+|..+..-+. ..+...+|+++...+..
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i-------~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAI-------SRFATHLPNIKVHAYFA 461 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhh-------HHHHhhCccceehhhcc
Confidence 456788999999999887754211 00113566666665544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.93 E-value=6.6e-11 Score=119.43 Aligned_cols=94 Identities=22% Similarity=0.274 Sum_probs=61.5
Q ss_pred CccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecC
Q 040040 130 GVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVES 209 (869)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~ 209 (869)
++..++.+++ +.-..+++..+ +++.||+.. ++.+++|+.|+|+++ +++.|....+ ..+++|-.|-+.+
T Consensus 57 GL~eVP~~LP----~~tveirLdqN-~I~~iP~~a----F~~l~~LRrLdLS~N-~Is~I~p~AF--~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 57 GLTEVPANLP----PETVEIRLDQN-QISSIPPGA----FKTLHRLRRLDLSKN-NISFIAPDAF--KGLASLLSLVLYG 124 (498)
T ss_pred CcccCcccCC----CcceEEEeccC-CcccCChhh----ccchhhhceeccccc-chhhcChHhh--hhhHhhhHHHhhc
Confidence 4445555543 34456667666 777777654 467777888888877 6766655543 2567777777777
Q ss_pred CCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 210 CEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 210 c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
..+++++|. ..+++|..||.|.+.-+
T Consensus 125 ~NkI~~l~k-~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 125 NNKITDLPK-GAFGGLSSLQRLLLNAN 150 (498)
T ss_pred CCchhhhhh-hHhhhHHHHHHHhcChh
Confidence 667777765 56777777777776543
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=6.2e-10 Score=131.13 Aligned_cols=269 Identities=20% Similarity=0.269 Sum_probs=164.2
Q ss_pred cCceeeeccccC-ccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 119 GLEELWLDEVQG-VENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 119 ~l~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
+++.|-+.+... +..+..+++ ..++.|++|++++|..+..+|++. +.+-+||+|++++. .++.+|.+ .+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~LP~~I-----~~Li~LryL~L~~t-~I~~LP~~---l~ 615 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSKLPSSI-----GELVHLRYLDLSDT-GISHLPSG---LG 615 (889)
T ss_pred ccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCcCChHH-----hhhhhhhcccccCC-CccccchH---HH
Confidence 566776665432 344444332 678999999999998999998776 67899999999988 78888877 78
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEec-------
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTL------- 270 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l------- 270 (869)
+|..|.+|++..+..+..++ .....|++|++|.+.... . . . ....+.++.++.+|+.+.+
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~--~i~~~L~~Lr~L~l~~s~-~---~-~------~~~~l~el~~Le~L~~ls~~~~s~~~ 682 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIP--GILLELQSLRVLRLPRSA-L---S-N------DKLLLKELENLEHLENLSITISSVLL 682 (889)
T ss_pred HHHhhheecccccccccccc--chhhhcccccEEEeeccc-c---c-c------chhhHHhhhcccchhhheeecchhHh
Confidence 99999999999988776663 256669999999987643 0 0 0 0000112222333333322
Q ss_pred -------------------cCCCCcccccccccCCCcCEEEeccccccccccCCCCCc-cc-ccCCceEEEEecCCCCcc
Q 040040 271 -------------------KSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAM-SS-CIQNLTRLIVHGCNNLKF 329 (869)
Q Consensus 271 -------------------~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~-~~-~l~~L~~L~l~~c~~l~~ 329 (869)
.+|..-........+.+|+.|.+.+|.+.++........ .. .++++..+.+.+|...+.
T Consensus 683 ~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 683 LEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 223333334446677888888888887433211111111 11 266777788888888777
Q ss_pred ccChhhHhccCCccEEEEeccccccccccccccccccc-cccccCcccee-ecccCccccccCCCcccCCCCccEEEEcc
Q 040040 330 LFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEER-KDIVFPQLNFL-KMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 330 l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~-~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
+.+ ....++|+.|.+..|..++++++......... .+..|.++..+ .+.+.+.+.++.... ..++.|+.+.+..
T Consensus 763 l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~-l~~~~l~~~~ve~ 838 (889)
T KOG4658|consen 763 LTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP-LSFLKLEELIVEE 838 (889)
T ss_pred cch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc-cCccchhheehhc
Confidence 633 44568999999999988888765533222111 13345555555 344444444333221 1234466666666
Q ss_pred CCccccc
Q 040040 408 CPELKAF 414 (869)
Q Consensus 408 c~~l~~l 414 (869)
||++..+
T Consensus 839 ~p~l~~~ 845 (889)
T KOG4658|consen 839 CPKLGKL 845 (889)
T ss_pred CcccccC
Confidence 6665443
No 23
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.89 E-value=1.7e-10 Score=121.71 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=64.3
Q ss_pred CCcchhHHHHhhhcCC-ChhhHHHHHHHhcCCCccchhhHHHHhhccceecccccCcccccchheecccCCCc-------
Q 040040 1 SPFLALTTITRALKNK-SVPEWENVLQELQRPSMKNFQGVLKEACSTIELHYKYLKGEKLKKIFLLCSCHDPT------- 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lK~CFlycs~Fped------- 72 (869)
|+||||+++|+.|+.+ +..+|+++++++.+. ..+..+....++.++.+||+.||+ ++|+||+|||+||++
T Consensus 194 glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~ 271 (287)
T PF00931_consen 194 GLPLALKLIASYLRSKSTVDEWEEALEELENS-LRESRDYDRSVFSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRER 271 (287)
T ss_dssp T-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC-HTCSSGSCHHHHHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHH
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccccceechhcCCc-cHHHHHhhCcCCCCCceECHHH
Confidence 6899999999999877 889999999998863 223333345799999999999986 799999999999986
Q ss_pred ----cccchhhh
Q 040040 73 ----QTCHDIRD 80 (869)
Q Consensus 73 ----w~~~g~~~ 80 (869)
|++||+++
T Consensus 272 li~lW~~e~~i~ 283 (287)
T PF00931_consen 272 LIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHTT-HHTC
T ss_pred HHHHHHHCCCCc
Confidence 99999874
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.71 E-value=6.1e-10 Score=99.33 Aligned_cols=159 Identities=22% Similarity=0.277 Sum_probs=114.3
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+.+...|.++++ +++.+|| .+..+.+|+.|++++ +.++++| .++..+++|++|++. ++++.
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vpp--nia~l~nlevln~~n-nqie~lp-------------~~issl~klr~lnvg-mnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPP--NIAELKNLEVLNLSN-NQIEELP-------------TSISSLPKLRILNVG-MNRLN 92 (264)
T ss_pred chhhhhhhhcccC-ceeecCC--cHHHhhhhhhhhccc-chhhhcC-------------hhhhhchhhhheecc-hhhhh
Confidence 3456666777776 5777766 778888888888876 4577777 567778888888874 45555
Q ss_pred cccc-cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccc
Q 040040 278 SFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGI 356 (869)
Q Consensus 278 ~~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i 356 (869)
.+|. .+.+|.|+.|++.++++.+ ..+|.-...++.|+-|++++ +..+.+ |.. ++.+++|+.|.+++. .+-.+
T Consensus 93 ~lprgfgs~p~levldltynnl~e---~~lpgnff~m~tlralyl~d-ndfe~l-p~d-vg~lt~lqil~lrdn-dll~l 165 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNE---NSLPGNFFYMTTLRALYLGD-NDFEIL-PPD-VGKLTNLQILSLRDN-DLLSL 165 (264)
T ss_pred cCccccCCCchhhhhhcccccccc---ccCCcchhHHHHHHHHHhcC-CCcccC-Chh-hhhhcceeEEeeccC-chhhC
Confidence 5553 6788999999999887442 34565555678888889987 456665 433 689999999999984 44444
Q ss_pred ccccccccccccccccCccceeecccCccccccCC
Q 040040 357 VFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCS 391 (869)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 391 (869)
+. +++.+.+|++|++.+.. ++-+|.
T Consensus 166 pk---------eig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 166 PK---------EIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred cH---------HHHHHHHHHHHhcccce-eeecCh
Confidence 43 36678899999998875 666654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=7.3e-08 Score=103.60 Aligned_cols=14 Identities=43% Similarity=0.404 Sum_probs=8.2
Q ss_pred CCCCCccEEEEecC
Q 040040 141 EGFPSLKLLHIQNN 154 (869)
Q Consensus 141 ~~~~~L~~L~l~~~ 154 (869)
...+++++|+++++
T Consensus 48 ~~~~~l~~l~l~~~ 61 (319)
T cd00116 48 RPQPSLKELCLSLN 61 (319)
T ss_pred hhCCCceEEecccc
Confidence 34455666666655
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.39 E-value=6.5e-08 Score=104.01 Aligned_cols=37 Identities=11% Similarity=-0.124 Sum_probs=18.6
Q ss_pred ccccEEEEeccCCccccc--chhHHhhcCCccEEEEccc
Q 040040 438 CKLKLMEVIFCKSLWTIF--PHNMFARFLKLQSLIVGAC 474 (869)
Q Consensus 438 ~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c 474 (869)
+.|++|++.+|....... -...+..+++|++++++++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 566677776664221000 0112334567777777763
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.29 E-value=7e-08 Score=86.41 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=27.0
Q ss_pred ccccceeeeecccceeeecc--ccccceEEEeecCCCccchHHHHHhccccceE
Q 040040 622 FPNLEELTLSKYIFTTWRQA--QFHKLKILHFISDGSDFFQVGLLQNIHNLEKL 673 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L 673 (869)
+..|+.|++++|++..++++ .+.+|+.|.+.+|..-.+|.. ++.++.|++|
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLREL 178 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHH
Confidence 45566667777766555542 266666666644444445543 3444433333
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.8e-06 Score=88.93 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=16.5
Q ss_pred ccccceeeeecccceeeeccccccceEEEe
Q 040040 622 FPNLEELTLSKYIFTTWRQAQFHKLKILHF 651 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l 651 (869)
+++|++|++++|.....+..-..+|+.|++
T Consensus 155 PsSLk~L~Is~c~~i~LP~~LP~SLk~L~l 184 (426)
T PRK15386 155 SPSLKTLSLTGCSNIILPEKLPESLQSITL 184 (426)
T ss_pred CCcccEEEecCCCcccCcccccccCcEEEe
Confidence 456666666666654433333455666665
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=5.5e-07 Score=88.04 Aligned_cols=123 Identities=20% Similarity=0.104 Sum_probs=72.7
Q ss_pred CCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccc-cccceEEEeecCCCccchHHHHHh
Q 040040 589 ECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQN 666 (869)
Q Consensus 589 ~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~p~~~l~~ 666 (869)
.|..|+++++++ .++.|.... +..|.++.|++++|.+..+..-+ +++|+.||+++|....+-.| -.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESv----------KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gw-h~K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESV----------KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGW-HLK 350 (490)
T ss_pred hHhhhhhccccccchhhhhhhh----------hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhh-Hhh
Confidence 467788888887 666665533 24678888888888887766543 77788888877766655544 223
Q ss_pred ccccceEEEEEEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccc---eeEecccchh
Q 040040 667 IHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRI---EIVFSKLKWL 743 (869)
Q Consensus 667 l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~---~~~~~~L~~L 743 (869)
+.+++.|.++.+ .++ .+ .+++.|-+|..||+++|. ++++.+ .+.+|.|+.+
T Consensus 351 -----------------LGNIKtL~La~N-~iE-~L-----SGL~KLYSLvnLDl~~N~--Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 351 -----------------LGNIKTLKLAQN-KIE-TL-----SGLRKLYSLVNLDLSSNQ--IEELDEVNHIGNLPCLETL 404 (490)
T ss_pred -----------------hcCEeeeehhhh-hHh-hh-----hhhHhhhhheeccccccc--hhhHHHhcccccccHHHHH
Confidence 445555555542 122 22 335556666666666664 444422 1245555555
Q ss_pred ccccC
Q 040040 744 FLESS 748 (869)
Q Consensus 744 ~l~~l 748 (869)
.+.+.
T Consensus 405 ~L~~N 409 (490)
T KOG1259|consen 405 RLTGN 409 (490)
T ss_pred hhcCC
Confidence 55543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.2e-07 Score=93.84 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=31.7
Q ss_pred cccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcc--cce------eEecccchhcccc
Q 040040 684 IAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISL--RIE------IVFSKLKWLFLES 747 (869)
Q Consensus 684 ~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l--~~~------~~~~~L~~L~l~~ 747 (869)
+..|++|+|++++.+. .........|+.|+.|+++.|. +.++ |+. ..|++|+.|.+..
T Consensus 245 ~~~L~~LdLs~N~li~----~~~~~~~~~l~~L~~Lnls~tg--i~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLID----FDQGYKVGTLPGLNQLNLSSTG--IASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hhHHhhccccCCcccc----cccccccccccchhhhhccccC--cchhcCCCccchhhhcccccceeeeccc
Confidence 5666777777655444 1222334566777777777775 4433 222 3566666665554
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=9.4e-06 Score=86.01 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=17.7
Q ss_pred CCccEEEEcccCCccccccccccCccccccccccccceeeccc
Q 040040 464 LKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFC 506 (869)
Q Consensus 464 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (869)
++|++|.+++|..+. +|+ +.+.+|+.|++..
T Consensus 156 sSLk~L~Is~c~~i~-LP~-----------~LP~SLk~L~ls~ 186 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPE-----------KLPESLQSITLHI 186 (426)
T ss_pred CcccEEEecCCCccc-Ccc-----------cccccCcEEEecc
Confidence 467777777766442 221 2455677777654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.09 E-value=1.3e-06 Score=85.48 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=84.6
Q ss_pred CCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccC
Q 040040 225 LPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHN 304 (869)
Q Consensus 225 L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~ 304 (869)
...|+++|+++.. ++.+- .++.-.|+++.|+++. +.+..+..+..+++|+.|+|++|.+.++
T Consensus 283 Wq~LtelDLS~N~-I~~iD-------------ESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~N~Ls~~--- 344 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQID-------------ESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSGNLLAEC--- 344 (490)
T ss_pred Hhhhhhccccccc-hhhhh-------------hhhhhccceeEEeccc-cceeeehhhhhcccceEeecccchhHhh---
Confidence 3456666776532 33333 2344467888888877 3455555567788888888888875543
Q ss_pred CCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 305 QLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
..|-..+.|.+.|.+.+ +.++++ +.++.+-+|..|++++ ++++++-.. ..++.+|.|+.+.+.++|
T Consensus 345 --~Gwh~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~-N~Ie~ldeV-------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 345 --VGWHLKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSS-NQIEELDEV-------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --hhhHhhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccc-cchhhHHHh-------cccccccHHHHHhhcCCC
Confidence 22233477888888887 456655 4577788888888887 455543211 247788888888888887
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.8e-06 Score=89.23 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=99.0
Q ss_pred ccccceeeeecccceeeec----cccccceEEEeecCCCcc-ch-HHHHHhccccceEEEE---EE-----ecccccccc
Q 040040 622 FPNLEELTLSKYIFTTWRQ----AQFHKLKILHFISDGSDF-FQ-VGLLQNIHNLEKLVLK---VE-----EHAEGIAQI 687 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~-~p-~~~l~~l~~L~~L~l~---~~-----~~~~~~~~L 687 (869)
+..|++..++++....... .++++++.||++.|.... .| ..+.+.+|+|+.|+++ +. .....+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445555555554433221 125555555554333221 11 2356777777777777 11 111237888
Q ss_pred cEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhccccCCCcceeecCCeeeeCCCcc
Q 040040 688 KSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLESSGSITSFCSGNYAISFPSLE 767 (869)
Q Consensus 688 ~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~ 767 (869)
+.|.+++|.- . |+...+....+|+|+.|++..|..-+.+-.....+..|+.|++.+ .++..+..+.....+|.|+
T Consensus 200 K~L~l~~CGl-s---~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 200 KQLVLNSCGL-S---WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred heEEeccCCC-C---HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccccccchh
Confidence 8888888731 1 222223345788888888888842122222233566777777766 4455666555556788888
Q ss_pred eEeeccCCCccc--cCCC-----CcCCCcceEEEccCCCc
Q 040040 768 VLIVENCPKLNT--FSAG-----VLKTPRLRAVQNWKLDE 800 (869)
Q Consensus 768 ~L~i~~c~~~~~--~~~~-----~~~~~~L~~l~~s~~~~ 800 (869)
.|.+++| .++. +|.+ ....|+|+.|.++.|+-
T Consensus 275 ~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 275 QLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 8888888 4333 3443 45678888888887764
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.1e-07 Score=91.07 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=19.6
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCce
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMK 240 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~ 240 (869)
.+.+|+.|.+++.. +.+- ....+.+=.+|+.|+++.|..+.
T Consensus 208 ~C~kLk~lSlEg~~-LdD~-I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLR-LDDP-IVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred HHHhhhhccccccc-cCcH-HHHHHhccccceeeccccccccc
Confidence 35556666655553 3221 11234444555555555555443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.98 E-value=7.5e-06 Score=77.26 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=33.4
Q ss_pred cCCcccEEeccCCCCcccccccc-cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhcc
Q 040040 261 EFSQLRKLTLKSLPQLRSFCSVV-AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSF 339 (869)
Q Consensus 261 ~l~~L~~L~l~~~~~l~~~~~~~-~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 339 (869)
+..++++|++.++ .+..+..++ .+.+|+.|++++|.++.+. .++. +++|+.|++++ +.++++ .......+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~----L~~L~~L~L~~-N~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLE--GLPG----LPRLKTLDLSN-NRISSI-SEGLDKNL 87 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T--T--------TT--EEE--S-S---S--CHHHHHH-
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCcccc--CccC----hhhhhhcccCC-CCCCcc-ccchHHhC
Confidence 3445666666663 234444443 4667788888888766542 2333 77888888876 566665 22333467
Q ss_pred CCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 340 VQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 340 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
++|++|++++ +.+.++-.- .....+|+|+.|++.++|
T Consensus 88 p~L~~L~L~~-N~I~~l~~l-------~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNEL-------EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TT-S---SCCCC-------GGGGG-TT--EEE-TT-G
T ss_pred CcCCEEECcC-CcCCChHHh-------HHHHcCCCcceeeccCCc
Confidence 8888888877 355543211 134577888888888877
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=7.5e-06 Score=77.27 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=5.6
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhc-CCCCCcEEEEeecC
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISR-GLPQLQTIKVTACK 237 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~-~L~~L~~L~l~~c~ 237 (869)
+..++|+|+|+++. ++.+ ..++ .+.+|+.|+++++.
T Consensus 17 n~~~~~~L~L~~n~-I~~I---e~L~~~l~~L~~L~Ls~N~ 53 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTI---ENLGATLDKLEVLDLSNNQ 53 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS-
T ss_pred cccccccccccccc-cccc---cchhhhhcCCCEEECCCCC
Confidence 34456777777663 5444 2333 45566666666543
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2.8e-06 Score=83.35 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccc-cccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEK-ISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
..|++|++++. .++.- ........+.+|+.|.+++. .+.+ +... +.+-.+|+.|+++.|..++...-.-.+
T Consensus 185 sRlq~lDLS~s-~it~s---tl~~iLs~C~kLk~lSlEg~-~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVS---TLHGILSQCSKLKNLSLEGL-RLDDPIVNT---IAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchh-heeHH---HHHHHHHHHHhhhhcccccc-ccCcHHHHH---HhccccceeeccccccccchhHHHHHH
Confidence 35788888765 22210 00011235667777877776 3433 2111 446789999999999988765333367
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIW 302 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~ 302 (869)
.+++.|+.|+++.|....+.......+ + -++|+.|+++||.+-- .
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~h---------i--se~l~~LNlsG~rrnl------------------------~ 301 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAH---------I--SETLTQLNLSGYRRNL------------------------Q 301 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhh---------h--chhhhhhhhhhhHhhh------------------------h
Confidence 889999999999997554433111000 0 2345555555543211 0
Q ss_pred cCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeeccc
Q 040040 303 HNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKD 382 (869)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 382 (869)
...+......+++|..|++++|..++.- -...+-.++.|++|.++.|..+.- .. .-+....|+|.+|++.+
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p---~~-----~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP---ET-----LLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh---HH-----eeeeccCcceEEEEecc
Confidence 1112222345777888888887777652 234456677888888888765421 00 00233456666666655
Q ss_pred C
Q 040040 383 L 383 (869)
Q Consensus 383 ~ 383 (869)
|
T Consensus 373 ~ 373 (419)
T KOG2120|consen 373 C 373 (419)
T ss_pred c
Confidence 5
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.66 E-value=5.9e-05 Score=57.95 Aligned_cols=58 Identities=29% Similarity=0.375 Sum_probs=27.9
Q ss_pred CccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 174 LLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 174 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
+|++|+++++ +++.++.+.+ ..+++|++|+++++ +++.+++ ..+.++++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f--~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSF--SNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTT--TTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHH--cCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 4455555554 4444443332 24555555555544 3444443 34455555555555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.47 E-value=0.00014 Score=55.87 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=34.7
Q ss_pred CCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
|+|++|++++|.+..+..+.+.. +++|++|++++ +.++.+ +...+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~----l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN----LPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT----GTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcC----CCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 45666666666655554443333 66677777764 345554 4445666666666666664
No 40
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.38 E-value=2.7e-05 Score=89.03 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=24.4
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
.+++|+.|.+.+|..+....-.+....+++|++|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 357777777777766665322235666777777777763
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.29 E-value=1.8e-05 Score=90.64 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=74.2
Q ss_pred cCCCCEEEecCCCCCcccC-ChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCC-CCc
Q 040040 199 FLRLRNLKVESCEKLTHIF-SFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSL-PQL 276 (869)
Q Consensus 199 l~~L~~L~L~~c~~l~~l~-~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~l 276 (869)
...++.+....+....... ........++|+.|.+.+|..+..... .......++|+.|++++| ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~-----------~~~~~~~~~L~~L~l~~~~~~~ 228 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSL-----------DALALKCPNLEELDLSGCCLLI 228 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhH-----------HHHHhhCchhheecccCccccc
Confidence 4455555555554322111 011334578888888888876654210 022344778888888773 222
Q ss_pred cccc-----ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccc
Q 040040 277 RSFC-----SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCM 351 (869)
Q Consensus 277 ~~~~-----~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 351 (869)
...+ ....+++|+.|+++++.. +.+..+......+++|++|.+.+|..+++..-......+++|++|++++|.
T Consensus 229 ~~~~~~~~~~~~~~~~L~~l~l~~~~~--isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 229 TLSPLLLLLLLSICRKLKSLDLSGCGL--VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred ccchhHhhhhhhhcCCcCccchhhhhc--cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 1111 123346667777766651 111222222223566777776666655443223344556667777777766
Q ss_pred cc
Q 040040 352 DL 353 (869)
Q Consensus 352 ~l 353 (869)
.+
T Consensus 307 ~~ 308 (482)
T KOG1947|consen 307 GL 308 (482)
T ss_pred cc
Confidence 55
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=7e-05 Score=86.68 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=45.2
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
.++++|+++|...+.+--+.-.+..+|+|++|.+.+..-... . ....+.+||+|..||++++ +++.+ .| ++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---d-F~~lc~sFpNL~sLDIS~T-nI~nl-~G---IS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---D-FSQLCASFPNLRSLDISGT-NISNL-SG---IS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---h-HHHHhhccCccceeecCCC-CccCc-HH---Hh
Confidence 456666666533321111111124556666666655311000 0 0011234555555555554 44433 11 34
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEee
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTA 235 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 235 (869)
.++||+.|.+.+.+ +........+-+|++|++||++.
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccc
Confidence 45555555554442 22211222334455555555554
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.22 E-value=0.00023 Score=78.78 Aligned_cols=172 Identities=21% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCCccEeeccccccccccccccccccccC-CCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccc
Q 040040 172 FPLLESLSLSNLMNLEKISCSQLRAESFL-RLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDD 250 (869)
Q Consensus 172 ~~~L~~L~L~~~~~l~~l~~~~~~~~~l~-~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 250 (869)
++.++.|++.+. .+.+++.. .+.+. +|+.|++++.. +..++. .++.+++|+.|+++++. +.+++.
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~---~~~~~~nL~~L~l~~N~-i~~l~~--~~~~l~~L~~L~l~~N~-l~~l~~------ 180 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL---IGLLKSNLKELDLSDNK-IESLPS--PLRNLPNLKNLDLSFND-LSDLPK------ 180 (394)
T ss_pred ccceeEEecCCc-ccccCccc---cccchhhcccccccccc-hhhhhh--hhhccccccccccCCch-hhhhhh------
Confidence 344555555544 34444332 22332 55566655552 444431 45555666666665543 334441
Q ss_pred cCCccccccccCCcccEEeccCCCCcccccccc-cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcc
Q 040040 251 INNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVV-AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKF 329 (869)
Q Consensus 251 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 329 (869)
.....+.|+.|++++ ..+..++... ....|++|.++++.+.. .+.....+.++..+.+.+ ..+..
T Consensus 181 -------~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~-n~~~~ 246 (394)
T COG4886 181 -------LLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSN-NKLED 246 (394)
T ss_pred -------hhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCC-ceeee
Confidence 111355555555555 3344444432 33346666666663111 111123344455555333 23332
Q ss_pred ccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 330 LFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 330 l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
+ ...++.+++++.|+++++ .++.+.. ...+.+|+.|++++..
T Consensus 247 ~--~~~~~~l~~l~~L~~s~n-~i~~i~~----------~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 247 L--PESIGNLSNLETLDLSNN-QISSISS----------LGSLTNLRELDLSGNS 288 (394)
T ss_pred c--cchhccccccceeccccc-ccccccc----------ccccCccCEEeccCcc
Confidence 1 133556666777776663 4444421 2355666777766654
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00013 Score=84.63 Aligned_cols=133 Identities=22% Similarity=0.256 Sum_probs=84.2
Q ss_pred CCCccEEEEecCCCc-eecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 143 FPSLKLLHIQNNPYL-LCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l-~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
-.+|++|+++|...+ ..|+.. ...-||+|++|.+.+.. +..-....+ -.+||||+.||++++. ++.+ ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k----ig~~LPsL~sL~i~~~~-~~~~dF~~l-c~sFpNL~sLDIS~Tn-I~nl---~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK----IGTMLPSLRSLVISGRQ-FDNDDFSQL-CASFPNLRSLDISGTN-ISNL---SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHH----HhhhCcccceEEecCce-ecchhHHHH-hhccCccceeecCCCC-ccCc---HH
Confidence 478999999885332 122211 23579999999999862 222111111 2379999999999994 7776 58
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccc-------cccccCCCcCEEEec
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF-------CSVVAFPNLETLKLS 294 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-------~~~~~l~~L~~L~L~ 294 (869)
+++|++||+|.+.+.+-- .-. ...++..+++|+.||++.-.....- .....+|+|+.||.+
T Consensus 191 IS~LknLq~L~mrnLe~e-~~~-----------~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFE-SYQ-----------DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS 258 (699)
T ss_pred HhccccHHHHhccCCCCC-chh-----------hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence 999999999999875421 111 1245677899999999874432221 112335666666666
Q ss_pred ccc
Q 040040 295 AIN 297 (869)
Q Consensus 295 ~~~ 297 (869)
+..
T Consensus 259 gTd 261 (699)
T KOG3665|consen 259 GTD 261 (699)
T ss_pred Ccc
Confidence 554
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.13 E-value=0.00034 Score=77.52 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=121.9
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCC-CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCCh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAF-PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSF 219 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 219 (869)
..++.+..|.+.++ .+..++... ..+ ++|+.|++++. .++.++.. ++.+++|+.|++.+++ +..+++
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~~-----~~~~~nL~~L~l~~N-~i~~l~~~---~~~l~~L~~L~l~~N~-l~~l~~- 180 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPLI-----GLLKSNLKELDLSDN-KIESLPSP---LRNLPNLKNLDLSFND-LSDLPK- 180 (394)
T ss_pred hcccceeEEecCCc-ccccCcccc-----ccchhhccccccccc-chhhhhhh---hhccccccccccCCch-hhhhhh-
Confidence 34567888888887 666666543 344 38999999987 66666422 5689999999999984 777754
Q ss_pred hhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccccc
Q 040040 220 SISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSE 299 (869)
Q Consensus 220 ~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~ 299 (869)
..+.+++|+.|++++.. +..+|. .+.....|+++.+.+.+..........+.++..+.+.++.+.
T Consensus 181 -~~~~~~~L~~L~ls~N~-i~~l~~-------------~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 181 -LLSNLSNLNNLDLSGNK-ISDLPP-------------EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred -hhhhhhhhhheeccCCc-cccCch-------------hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee
Confidence 44488999999999854 666762 222355588888877655555555667777888887777644
Q ss_pred ccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 300 TIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 300 ~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
.+ +..++.+++++.|+++++ .+.++ +. ++.+.+++.|++++.
T Consensus 246 ~~-----~~~~~~l~~l~~L~~s~n-~i~~i-~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 246 DL-----PESIGNLSNLETLDLSNN-QISSI-SS--LGSLTNLRELDLSGN 287 (394)
T ss_pred ec-----cchhccccccceeccccc-ccccc-cc--ccccCccCEEeccCc
Confidence 32 444566788999999874 56665 22 678889999999884
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.95 E-value=5.6e-05 Score=81.08 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=97.6
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..|..|..+.+..+ .+..++... ..+..|..|+|+.+ .+..+|.. +. +--|+.|.++++ +++.+|.
T Consensus 95 ~~f~~Le~liLy~n-~~r~ip~~i-----~~L~~lt~l~ls~N-qlS~lp~~---lC-~lpLkvli~sNN-kl~~lp~-- 160 (722)
T KOG0532|consen 95 CAFVSLESLILYHN-CIRTIPEAI-----CNLEALTFLDLSSN-QLSHLPDG---LC-DLPLKVLIVSNN-KLTSLPE-- 160 (722)
T ss_pred HHHHHHHHHHHHhc-cceecchhh-----hhhhHHHHhhhccc-hhhcCChh---hh-cCcceeEEEecC-ccccCCc--
Confidence 44556666666555 566666543 45666666666655 44444443 32 233777777776 5777765
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~ 300 (869)
.++.++.|..||.+.|. +..+| ..++.+.+|+.|.+... ++..+|.....=.|..||++.|++..
T Consensus 161 ~ig~~~tl~~ld~s~ne-i~slp-------------sql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~ 225 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNE-IQSLP-------------SQLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISY 225 (722)
T ss_pred ccccchhHHHhhhhhhh-hhhch-------------HHhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceee
Confidence 66677777777777654 45555 45566777777776653 34444432222346677777776544
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhh--HhccCCccEEEEecc
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSL--VRSFVQLQHLEIRKC 350 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~~L~l~~c 350 (869)
+ |.-+..|..|++|.|.+ +-++. +|..+ -+...=-|+|++.-|
T Consensus 226 i-----Pv~fr~m~~Lq~l~Len-NPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 L-----PVDFRKMRHLQVLQLEN-NPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred c-----chhhhhhhhheeeeecc-CCCCC-ChHHHHhccceeeeeeecchhc
Confidence 3 33344567777777754 44554 23221 112223455666555
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.81 E-value=4.9e-05 Score=81.52 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..+..|.+|+++.+ .+..+|... .+--|++|.++++ +++.+|.. ++..+.|..|+.+.|. +..+|+
T Consensus 118 ~~L~~lt~l~ls~N-qlS~lp~~l------C~lpLkvli~sNN-kl~~lp~~---ig~~~tl~~ld~s~ne-i~slps-- 183 (722)
T KOG0532|consen 118 CNLEALTFLDLSSN-QLSHLPDGL------CDLPLKVLIVSNN-KLTSLPEE---IGLLPTLAHLDVSKNE-IQSLPS-- 183 (722)
T ss_pred hhhhHHHHhhhccc-hhhcCChhh------hcCcceeEEEecC-ccccCCcc---cccchhHHHhhhhhhh-hhhchH--
Confidence 34455555555555 445444433 3334566666555 45554444 4555566666665553 444543
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEeccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINS 298 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l 298 (869)
.++++.+|+.|.++... +..+| .+.. --.|..|+++ |+++..+|. +..+..|++|.|.+|.+
T Consensus 184 ql~~l~slr~l~vrRn~-l~~lp-------------~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNH-LEDLP-------------EELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HhhhHHHHHHHHHhhhh-hhhCC-------------HHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccCCC
Confidence 55566666666655432 33444 1222 1234555553 345555553 34455666666666553
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.18 E-value=0.0068 Score=42.54 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=20.4
Q ss_pred CCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 200 LRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 200 ~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
++|++|+++++ +++++++ .+++|++|++|+++++.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~--~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP--ELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG--HGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCc--hHhCCCCCCEEEecCCC
Confidence 35666666666 3666543 46667777777776653
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.05 E-value=0.0081 Score=42.15 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIF 217 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 217 (869)
++|++|+++++ ++++++.. ++.+++|++|++++|+ +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~---l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE---LSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH---GTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCch---HhCCCCCCEEEecCCC-CCCCc
Confidence 46778888877 67776653 4578888888888884 66653
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.01 E-value=0.00031 Score=77.59 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=74.5
Q ss_pred cccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhc
Q 040040 259 KIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRS 338 (869)
Q Consensus 259 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 338 (869)
+.-++.|++|+++. ++++....+..++.|++|+|++|.+..+..-.... + .|+.|.+++ +.++.+ ..+.+
T Consensus 183 Lqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g----c-~L~~L~lrn-N~l~tL---~gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG----C-KLQLLNLRN-NALTTL---RGIEN 252 (1096)
T ss_pred HHHHHHhhhhccch-hhhhhhHHHHhcccccccccccchhccccccchhh----h-hheeeeecc-cHHHhh---hhHHh
Confidence 34467889999987 45666666778899999999999866543322221 3 499999988 567765 34678
Q ss_pred cCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 339 FVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 339 L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
|.+|+.|++++. -+.+.. .......+..|+.|.+.|+|
T Consensus 253 LksL~~LDlsyN-ll~~hs-------eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHS-------ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHh-hhhcch-------hhhHHHHHHHHHHHhhcCCc
Confidence 999999999873 332211 01134567788999999887
No 51
>PLN03150 hypothetical protein; Provisional
Probab=95.64 E-value=0.023 Score=66.40 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=70.9
Q ss_pred cccEEeccCCCCccccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCc
Q 040040 264 QLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQL 342 (869)
Q Consensus 264 ~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 342 (869)
.++.|++.++.--..+| .+..+++|+.|+|++|.+. +.+|..++.+++|+.|+++++ .+....| ..++++++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N-~lsg~iP-~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYN-SFNGSIP-ESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc----CcCChHHhCCCCCCEEECCCC-CCCCCCc-hHHhcCCCC
Confidence 46777887754322333 2567789999999998743 235655677899999999886 4444334 447889999
Q ss_pred cEEEEecccccc-ccccccccccccccccccCccceeecccCccccc
Q 040040 343 QHLEIRKCMDLE-GIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTR 388 (869)
Q Consensus 343 ~~L~l~~c~~l~-~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 388 (869)
+.|+++++. +. .++..- ...+.++..+.+.+++.+..
T Consensus 493 ~~L~Ls~N~-l~g~iP~~l--------~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 493 RILNLNGNS-LSGRVPAAL--------GGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CEEECcCCc-ccccCChHH--------hhccccCceEEecCCccccC
Confidence 999999864 43 332210 01234566778887765543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.59 E-value=0.00081 Score=74.45 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=69.9
Q ss_pred CCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeec-cccccceEEEeecCCCccchHHHHHh
Q 040040 589 ECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQ-AQFHKLKILHFISDGSDFFQVGLLQN 666 (869)
Q Consensus 589 ~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~p~~~l~~ 666 (869)
.|..|...+.+. .+......- ..++.|+.|++++|++..... ..+++|+.||++.|....+|......
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SL----------qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g 231 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESL----------QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG 231 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHH----------HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhh
Confidence 466666666666 444433211 146888999999998876443 12788888888777777777654455
Q ss_pred ccccceEEEE---EE--ecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEeccc
Q 040040 667 IHNLEKLVLK---VE--EHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECA 725 (869)
Q Consensus 667 l~~L~~L~l~---~~--~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~ 725 (869)
+. |+.|.++ +. ...+.+.+|+.|+++++=-.. +- .-..+..|..|..|++.+||
T Consensus 232 c~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~-hs---eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSE-HS---ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhc-ch---hhhHHHHHHHHHHHhhcCCc
Confidence 55 6777666 11 112236666666666521111 10 01123456666667777666
No 53
>PLN03150 hypothetical protein; Provisional
Probab=95.53 E-value=0.026 Score=65.91 Aligned_cols=105 Identities=11% Similarity=0.127 Sum_probs=64.2
Q ss_pred CccEeeccccccccc-cccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccC
Q 040040 174 LLESLSLSNLMNLEK-ISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDIN 252 (869)
Q Consensus 174 ~L~~L~L~~~~~l~~-l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 252 (869)
.++.|+|.++ .+.. ++.. ++.+++|++|+|++|. +....| ..++.+++|+.|+++++..-..+|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~---i~~L~~L~~L~Ls~N~-l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP--------- 483 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPND---ISKLRHLQSINLSGNS-IRGNIP-PSLGSITSLEVLDLSYNSFNGSIP--------- 483 (623)
T ss_pred EEEEEECCCC-CccccCCHH---HhCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECCCCCCCCCCc---------
Confidence 3667777766 4433 2222 4577888888888774 443222 367788888888888765444555
Q ss_pred CccccccccCCcccEEeccCCCCccccccc-c-cCCCcCEEEecccc
Q 040040 253 NTEVIDKIEFSQLRKLTLKSLPQLRSFCSV-V-AFPNLETLKLSAIN 297 (869)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~-~l~~L~~L~L~~~~ 297 (869)
..+..+++|++|+++++.--..+|.. . ...++..+++.+|.
T Consensus 484 ----~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 484 ----ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ----hHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 44566778888888776533344431 1 12355677777765
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.0028 Score=62.91 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=93.7
Q ss_pred ccccceeeeecccceeeec---cccccceEEEeecCC-CccchHHHHHhccccceEEEE------EEeccc----ccccc
Q 040040 622 FPNLEELTLSKYIFTTWRQ---AQFHKLKILHFISDG-SDFFQVGLLQNIHNLEKLVLK------VEEHAE----GIAQI 687 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~-~~~~p~~~l~~l~~L~~L~l~------~~~~~~----~~~~L 687 (869)
+|.|+.|+|+.|.+..... ....+|++|-+++.. .-.--..++..+|.++.|+++ +..... -.+.+
T Consensus 96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v 175 (418)
T KOG2982|consen 96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEV 175 (418)
T ss_pred CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhh
Confidence 6788888888887655222 236777777773322 212223467778888888776 221111 14456
Q ss_pred cEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhccccC--CCcceeecCCeeeeCCC
Q 040040 688 KSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLESS--GSITSFCSGNYAISFPS 765 (869)
Q Consensus 688 ~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~l--~~l~~~~~~~~~~~~~~ 765 (869)
+.|.+..|.. ..|.+.......|||+..+-+..|| +..+..+-.+..+..+...++ .++-+...-.....||+
T Consensus 176 ~tlh~~~c~~---~~w~~~~~l~r~Fpnv~sv~v~e~P--lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 176 LTLHQLPCLE---QLWLNKNKLSRIFPNVNSVFVCEGP--LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQ 250 (418)
T ss_pred hhhhcCCcHH---HHHHHHHhHHhhcccchheeeecCc--ccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCch
Confidence 6666665543 3344444444678999999999998 666644443433444434443 23333322233357899
Q ss_pred cceEeeccCCCccccCCC
Q 040040 766 LEVLIVENCPKLNTFSAG 783 (869)
Q Consensus 766 L~~L~i~~c~~~~~~~~~ 783 (869)
|..|.|.+.|....+..+
T Consensus 251 l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRGG 268 (418)
T ss_pred hheeeccCCcccccccCC
Confidence 999999999988766544
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.0038 Score=62.00 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=89.3
Q ss_pred ccccceeeeecccceeeecc-----ccccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccccEEEcCccc
Q 040040 622 FPNLEELTLSKYIFTTWRQA-----QFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLW 696 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~ 696 (869)
.+.+++|++.+|.++.|..- +++.|+.|+++.|..... ++.+| ....+|+.|.+.+-
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp-------------~p~~nl~~lVLNgT- 131 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLP-------------LPLKNLRVLVLNGT- 131 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCc-------------ccccceEEEEEcCC-
Confidence 46788888888888775442 255555555533322210 11111 12456777777651
Q ss_pred cccccccCCCCCcccccCCccEEEEecccchhhcccc---ee--EecccchhccccCCCcceeecCCeeeeCCCcceEee
Q 040040 697 FIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRI---EI--VFSKLKWLFLESSGSITSFCSGNYAISFPSLEVLIV 771 (869)
Q Consensus 697 ~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~---~~--~~~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i 771 (869)
.|. |...-.....+|.++.|+++.|. +.++-. ++ .-+.++++....|+-..-....+..-.||++..+.+
T Consensus 132 ~L~---w~~~~s~l~~lP~vtelHmS~N~--~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 132 GLS---WTQSTSSLDDLPKVTELHMSDNS--LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred CCC---hhhhhhhhhcchhhhhhhhccch--hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 111 22222335677888888888884 666621 11 345677777777754432222222236899999999
Q ss_pred ccCCCccc-cCCCCcCCCcceEEEccCCC
Q 040040 772 ENCPKLNT-FSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 772 ~~c~~~~~-~~~~~~~~~~L~~l~~s~~~ 799 (869)
.+||.-.. -.++....|.+--|.++.++
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccc
Confidence 99986332 34556667777778887554
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.10 E-value=0.051 Score=51.32 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=61.7
Q ss_pred CCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccccccccc
Q 040040 285 FPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIE 364 (869)
Q Consensus 285 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~ 364 (869)
..+...+++++|.+..+ ..+|. +++|..|.+.+ +.++.+-| ....-+++|+.|.+.+ +++.++..-+
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~----l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~Ltn-Nsi~~l~dl~---- 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPH----LPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTN-NSIQELGDLD---- 107 (233)
T ss_pred ccccceecccccchhhc--ccCCC----ccccceEEecC-Ccceeecc-chhhhccccceEEecC-cchhhhhhcc----
Confidence 34566777777764442 23554 77777887765 56666633 4445667788888877 3555543221
Q ss_pred ccccccccCccceeecccCccccccCC---CcccCCCCccEEEEcc
Q 040040 365 EERKDIVFPQLNFLKMKDLAKLTRFCS---GNCIELPSLKQLRMAK 407 (869)
Q Consensus 365 ~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~l~~L~~L~l~~ 407 (869)
....+|+|++|.+-+.+ ++.-.. .....+|+|+.|+...
T Consensus 108 ---pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 ---PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ---hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 34577888888887776 222111 1123456666666544
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.40 E-value=0.011 Score=65.74 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=18.5
Q ss_pred ccEEEcCccccccccccCCCCCcccccCCccEEEEeccc
Q 040040 687 IKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECA 725 (869)
Q Consensus 687 L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~ 725 (869)
|+++++.+.+--+ ++ ..+..+..++.|++.++.
T Consensus 234 L~~l~l~~n~i~~--~~----~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISR--SP----EGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCcccc--cc----ccccccccccccchhhcc
Confidence 6666666532211 10 335567777777777775
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.35 E-value=0.0094 Score=60.82 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=24.3
Q ss_pred ccCCCCEEEecCCCCC-cccCCh-hhhcCCCCCcEEEEeecC
Q 040040 198 SFLRLRNLKVESCEKL-THIFSF-SISRGLPQLQTIKVTACK 237 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l-~~l~~~-~~~~~L~~L~~L~l~~c~ 237 (869)
..++|++|+|+++--= +.++.+ ..++++..|++|.+.+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 4567888888776411 111111 245667888888888876
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.14 E-value=0.09 Score=49.70 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred ccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccc
Q 040040 279 FCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVF 358 (869)
Q Consensus 279 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~ 358 (869)
+..+..++.|.+|.+.+|.|..|...- ...+++|+.|.+.+ +++..+....-+..+|.|++|.+-+.+ +++-..
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~ 130 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKN 130 (233)
T ss_pred cccCCCccccceEEecCCcceeeccch----hhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCc-hhcccC
Confidence 333445677888888888766654332 22367788888877 333333222335677888888887742 322111
Q ss_pred ccccccccccccccCccceeecccCc
Q 040040 359 PEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
-... -+..+|+|+.|++.+..
T Consensus 131 YR~y-----vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 131 YRLY-----VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeE-----EEEecCcceEeehhhhh
Confidence 0000 14578889999887654
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.49 E-value=0.031 Score=62.12 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEee
Q 040040 171 AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTA 235 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 235 (869)
.+.+|+.|++.+. +++++... ...+++|++|+++++ +++++ ..+..++.|+.|++.+
T Consensus 93 ~~~~l~~l~l~~n-~i~~i~~~---l~~~~~L~~L~ls~N-~I~~i---~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEKIENL---LSSLVNLQVLDLSFN-KITKL---EGLSTLTLLKELNLSG 149 (414)
T ss_pred cccceeeeecccc-chhhcccc---hhhhhcchheecccc-ccccc---cchhhccchhhheecc
Confidence 4445555555544 33333221 224555555555554 24443 2334444455555544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.013 Score=57.74 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=54.2
Q ss_pred ccccceeeeecccceeeeccc-cccceEEEeecCCCccchHHHHHhccccceEEEE---EEecc-----cccccccEEEc
Q 040040 622 FPNLEELTLSKYIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK---VEEHA-----EGIAQIKSLKL 692 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~---~~~~~-----~~~~~L~~L~l 692 (869)
+.+.+.|+.++|.+..|.... ++.|+.|.|+-|....+- -++.|++|++|+++ ++... .++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345566666666666655543 666666666444433322 26777777777776 33222 23778888888
Q ss_pred CccccccccccCCCCC----cccccCCccEEEE
Q 040040 693 NKLWFIKEHLWNPDSK----LDSFLQNLEFLEV 721 (869)
Q Consensus 693 ~~~~~L~~~l~~~~~~----~~~~l~~L~~L~l 721 (869)
..+|... ..++. .+..||||+.||=
T Consensus 96 ~ENPCc~----~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCG----EAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCccc----ccchhHHHHHHHHcccchhccC
Confidence 8766544 11111 2456788877763
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.00 E-value=0.095 Score=51.73 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccc--ccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNL--MNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~--~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
+..|..|.+.++ ++..+-. +..+|+|++|.++++ .-..++. .....+++|++|+++++. ++.+-...
T Consensus 42 ~~~le~ls~~n~-gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~---vl~e~~P~l~~l~ls~Nk-i~~lstl~ 110 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTN------FPKLPKLKKLELSDNYRRVSGGLE---VLAEKAPNLKVLNLSGNK-IKDLSTLR 110 (260)
T ss_pred ccchhhhhhhcc-ceeeccc------CCCcchhhhhcccCCcccccccce---ehhhhCCceeEEeecCCc-cccccccc
Confidence 445555555554 3333321 135566777777665 1111111 112345777777777763 44333333
Q ss_pred hhcCCCCCcEEEEeecCC
Q 040040 221 ISRGLPQLQTIKVTACKN 238 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~ 238 (869)
.+..+.+|..|++.+|..
T Consensus 111 pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhhcchhhhhcccCCc
Confidence 455666677777776654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.85 E-value=0.1 Score=51.48 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=30.3
Q ss_pred ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccc
Q 040040 283 VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCM 351 (869)
Q Consensus 283 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 351 (869)
..+|+|++|.++.|.... ...++.....+++|++|++++ ++++.+-....+..+.+|..|++.+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~--~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRV--SGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccc--cccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 345666666666663111 111222223346666666665 233322111224455555666666553
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.034 Score=52.52 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=18.7
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+.+++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4445555555555444321111112234555555555555543
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=0.044 Score=51.76 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
..++.++.|.+.+|..+.+++.+.+.. -.++|+.|+|++|+.+++- ....+..+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCch
Confidence 466777888888888777776654432 5778888888888877764 22345666677777666543
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.57 E-value=0.057 Score=55.30 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=18.7
Q ss_pred ccccceEeecCCCCCceecCCCCC--CCCCCCceeeecc-ccC
Q 040040 564 FPSLTFLKLRDLPYLTTFYSGMHT--LECPERANLIFQL-KNP 603 (869)
Q Consensus 564 ~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~L~~L~l~~-~l~ 603 (869)
+|.|++++|+++..=....++... ..|..|++|.+.+ .+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 457777777765321111111000 0246666666666 444
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.51 E-value=0.21 Score=26.81 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=9.0
Q ss_pred CCccEEEEecccchhhccc
Q 040040 714 QNLEFLEVKECALSLISLR 732 (869)
Q Consensus 714 ~~L~~L~l~~c~~~l~~l~ 732 (869)
++|+.|++++|. +.++|
T Consensus 1 ~~L~~L~l~~n~--L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR--LTSLP 17 (17)
T ss_dssp TT-SEEEETSS----SSE-
T ss_pred CccCEEECCCCC--CCCCc
Confidence 467777888775 55543
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.15 E-value=0.047 Score=48.07 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=32.8
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCC
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSL 273 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 273 (869)
.-.+|+..+|+++. +++.|+ ......+.+++|++.+. .+.++| .++..++.|+.|+++..
T Consensus 51 ~~~el~~i~ls~N~-fk~fp~-kft~kf~t~t~lNl~~n-eisdvP-------------eE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 51 KGYELTKISLSDNG-FKKFPK-KFTIKFPTATTLNLANN-EISDVP-------------EELAAMPALRSLNLRFN 110 (177)
T ss_pred CCceEEEEecccch-hhhCCH-HHhhccchhhhhhcchh-hhhhch-------------HHHhhhHHhhhcccccC
Confidence 44556666666663 555543 33444556666666653 355555 34445566666666553
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.00 E-value=0.36 Score=27.94 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=11.5
Q ss_pred ccceeeeecccceeeecc
Q 040040 624 NLEELTLSKYIFTTWRQA 641 (869)
Q Consensus 624 ~L~~L~l~~~~~~~~~~~ 641 (869)
+|++|++++|.++.+++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 467777777776654433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=0.035 Score=54.88 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=6.6
Q ss_pred ccCccceeecccCc
Q 040040 371 VFPQLNFLKMKDLA 384 (869)
Q Consensus 371 ~~~~L~~L~l~~~~ 384 (869)
.+|+|+.|.|..+|
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 44455555544443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.84 E-value=6.5 Score=35.04 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=14.5
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEe
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIR 348 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~ 348 (869)
+++++.+.+.+ .+..+ +...+..+++|+.+.+.
T Consensus 57 ~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPN--NLKSI-GDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETS--TT-EE--TTTTTT-TTECEEEET
T ss_pred ccccccccccc--ccccc-ccccccccccccccccC
Confidence 44566666643 33332 23344556666666663
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.22 E-value=0.34 Score=42.89 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=46.5
Q ss_pred CCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccc--cccceEEEeecCCCccchHHHHHhc
Q 040040 591 PERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNI 667 (869)
Q Consensus 591 ~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~p~~~l~~l 667 (869)
..|+.+++++ .++.||..... .+|..+.|++++|.+..++.+. ++.|+.|++..|.....|.-++. +
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~---------kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L 122 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTI---------KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP-L 122 (177)
T ss_pred ceEEEEecccchhhhCCHHHhh---------ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHH-H
Confidence 4566667777 67766654311 3567778888888877766543 67777777766666666655443 5
Q ss_pred cccceEE
Q 040040 668 HNLEKLV 674 (869)
Q Consensus 668 ~~L~~L~ 674 (869)
.+|-.|+
T Consensus 123 ~~l~~Ld 129 (177)
T KOG4579|consen 123 IKLDMLD 129 (177)
T ss_pred HhHHHhc
Confidence 5554444
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.63 E-value=9.9 Score=33.81 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=36.2
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
.++.+|+.+.+.. .++.++... +..+++|+.+.+.+ +++.+....+ ..+++|+++.+.+ .+..++. .
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~----F~~~~~l~~i~~~~--~~~~i~~~~F--~~~~~l~~i~~~~--~~~~i~~-~ 75 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENA----FSNCTSLKSINFPN--NLTSIGDNAF--SNCKSLESITFPN--NLKSIGD-N 75 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTT----TTT-TT-SEEEESS--TTSCE-TTTT--TT-TT-EEEEETS--TT-EE-T-T
T ss_pred hCCCCCCEEEECC--CeeEeChhh----cccccccccccccc--cccccceeee--ecccccccccccc--ccccccc-c
Confidence 4556677666653 455555433 34555677776655 2445444332 2455667777754 2333433 3
Q ss_pred hhcCCCCCcEEEEe
Q 040040 221 ISRGLPQLQTIKVT 234 (869)
Q Consensus 221 ~~~~L~~L~~L~l~ 234 (869)
.+..+++|+.+++.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 45566677766664
No 74
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=70.98 E-value=2.7 Score=25.39 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=10.9
Q ss_pred CCCCEEEecCCCCCcc
Q 040040 200 LRLRNLKVESCEKLTH 215 (869)
Q Consensus 200 ~~L~~L~L~~c~~l~~ 215 (869)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5677777777776654
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=67.50 E-value=2.8 Score=25.30 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=11.3
Q ss_pred cccceeeeecccceeeecc
Q 040040 623 PNLEELTLSKYIFTTWRQA 641 (869)
Q Consensus 623 ~~L~~L~l~~~~~~~~~~~ 641 (869)
++|+.|++++|.+..++++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666555444
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=67.50 E-value=2.8 Score=25.30 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=11.3
Q ss_pred cccceeeeecccceeeecc
Q 040040 623 PNLEELTLSKYIFTTWRQA 641 (869)
Q Consensus 623 ~~L~~L~l~~~~~~~~~~~ 641 (869)
++|+.|++++|.+..++++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666555444
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=49.51 E-value=8.5 Score=23.34 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=14.5
Q ss_pred CCccEEEEecccchhhcccc
Q 040040 714 QNLEFLEVKECALSLISLRI 733 (869)
Q Consensus 714 ~~L~~L~l~~c~~~l~~l~~ 733 (869)
++|+.|++++|. |+.||+
T Consensus 2 ~~L~~L~vs~N~--Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQ--LTSLPE 19 (26)
T ss_pred cccceeecCCCc--cccCcc
Confidence 468889999986 888776
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=48.16 E-value=7.2 Score=39.07 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=75.6
Q ss_pred ccCCCCEEEecCCCCCcccCC--hhhhcCCCCCcEEEEeecCCceeeecccccc-ccCCccccccccCCcccEEeccCCC
Q 040040 198 SFLRLRNLKVESCEKLTHIFS--FSISRGLPQLQTIKVTACKNMKVIFEVGRED-DINNTEVIDKIEFSQLRKLTLKSLP 274 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~--~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~ 274 (869)
++|+|+..+++++..-...|+ ...+++-..|++|.+++|. +..+....+.. .-..+...-...-|.|+...... +
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-N 167 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-N 167 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-c
Confidence 567777777766642222221 0235566777777777765 22111000000 00000001123356677665543 3
Q ss_pred Ccccccc------cccCCCcCEEEeccccccccccCCC-CCcccccCCceEEEEecCCCCccccC---hhhHhccCCccE
Q 040040 275 QLRSFCS------VVAFPNLETLKLSAINSETIWHNQL-PAMSSCIQNLTRLIVHGCNNLKFLFS---TSLVRSFVQLQH 344 (869)
Q Consensus 275 ~l~~~~~------~~~l~~L~~L~L~~~~l~~i~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~~ 344 (869)
++.+.+. +....+|+++.+..|.|+.--...+ -.....+++|+.|++.+.. ++...+ ...+..-+.|++
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhh
Confidence 4444432 3345789999999998553100000 0012347899999998843 332211 112334467899
Q ss_pred EEEecc
Q 040040 345 LEIRKC 350 (869)
Q Consensus 345 L~l~~c 350 (869)
|.+.+|
T Consensus 247 L~lnDC 252 (388)
T COG5238 247 LRLNDC 252 (388)
T ss_pred ccccch
Confidence 999998
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=35.11 E-value=22 Score=20.79 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=8.1
Q ss_pred CCccEEEEeccc
Q 040040 714 QNLEFLEVKECA 725 (869)
Q Consensus 714 ~~L~~L~l~~c~ 725 (869)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 678888888886
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.08 E-value=25 Score=21.37 Aligned_cols=16 Identities=44% Similarity=0.474 Sum_probs=11.7
Q ss_pred cccceeeeecccceee
Q 040040 623 PNLEELTLSKYIFTTW 638 (869)
Q Consensus 623 ~~L~~L~l~~~~~~~~ 638 (869)
.+|++|+++.|.+..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5778888888877553
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=27.96 E-value=84 Score=31.88 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=46.9
Q ss_pred eCCCcceEeeccCCCccccCCC----CcCCCcceEEEccCCC-ccccccchHHHHHHHHHHHhhhhccccccccceeccc
Q 040040 762 SFPSLEVLIVENCPKLNTFSAG----VLKTPRLRAVQNWKLD-EDFWAGDVNTTLQHLNEKMAKRRMTEVEYESETSMSE 836 (869)
Q Consensus 762 ~~~~L~~L~i~~c~~~~~~~~~----~~~~~~L~~l~~s~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 836 (869)
.+|.|+.++++++--..+||+- +.+++.|.+|.+++|+ +-+-.+.+...++++-.++- .
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK----------------a 153 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK----------------A 153 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh----------------h
Confidence 4466777777777666666644 4667889999998776 33444567777777776661 2
Q ss_pred cCcccchhhccC
Q 040040 837 ENEAEEEEENVG 848 (869)
Q Consensus 837 ~~~~~~~~~~~~ 848 (869)
.+-|.++.+..|
T Consensus 154 a~kp~Le~vicg 165 (388)
T COG5238 154 ADKPKLEVVICG 165 (388)
T ss_pred ccCCCceEEEec
Confidence 233667777777
No 82
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=22.77 E-value=51 Score=18.70 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=12.3
Q ss_pred CcCEEEeccccccccccC
Q 040040 287 NLETLKLSAINSETIWHN 304 (869)
Q Consensus 287 ~L~~L~L~~~~l~~i~~~ 304 (869)
+|.+|++.+.+++++|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 356677777777777765
Done!