Query 040040
Match_columns 869
No_of_seqs 765 out of 4449
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 06:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-35 1.6E-39 350.7 30.8 557 141-799 97-715 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-33 7.4E-38 336.4 31.8 558 116-783 98-723 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-30 1.1E-34 306.4 30.4 545 118-776 25-621 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-29 3.1E-33 293.8 36.6 542 144-798 25-594 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3E-29 1E-33 293.9 30.3 294 439-799 255-558 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-29 7E-34 295.3 28.4 283 439-799 262-556 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.3E-29 2.9E-33 290.1 28.7 294 374-748 255-557 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 6.3E-28 2.1E-32 282.7 32.0 503 117-725 31-556 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-27 6.4E-32 288.0 34.9 159 143-325 23-185 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-26 9.6E-31 277.7 37.3 497 148-747 8-535 (844)
11 2z81_A CD282 antigen, TOLL-lik 99.9 4.9E-26 1.7E-30 263.3 30.2 469 143-725 25-508 (549)
12 2z81_A CD282 antigen, TOLL-lik 99.9 6.1E-26 2.1E-30 262.5 29.3 465 118-675 26-504 (549)
13 2z63_A TOLL-like receptor 4, v 99.9 1E-25 3.4E-30 262.1 27.9 132 144-299 28-162 (570)
14 2z63_A TOLL-like receptor 4, v 99.9 1.8E-24 6.3E-29 251.4 31.1 454 117-676 27-526 (570)
15 4ecn_A Leucine-rich repeat pro 99.9 2E-24 6.8E-29 256.4 27.6 366 185-640 436-844 (876)
16 4eco_A Uncharacterized protein 99.9 1.7E-24 5.9E-29 253.1 24.9 427 118-636 81-600 (636)
17 2z7x_B TOLL-like receptor 1, v 99.9 3.1E-23 1.1E-27 237.9 29.7 121 147-297 3-126 (520)
18 4eco_A Uncharacterized protein 99.9 4.3E-24 1.5E-28 249.7 22.1 448 263-778 81-633 (636)
19 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-23 3.8E-28 241.6 24.9 450 121-674 3-474 (520)
20 4ecn_A Leucine-rich repeat pro 99.9 7E-24 2.4E-28 251.7 21.5 357 326-750 436-839 (876)
21 1jl5_A Outer protein YOPM; leu 99.9 1.6E-24 5.3E-29 242.0 12.1 173 172-407 10-182 (454)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.2E-27 234.9 24.6 168 464-674 331-503 (562)
23 4g8a_A TOLL-like receptor 4; l 99.9 7.6E-22 2.6E-26 232.7 29.1 133 144-300 52-187 (635)
24 4g8a_A TOLL-like receptor 4; l 99.9 4.3E-21 1.5E-25 226.2 34.2 492 117-725 51-578 (635)
25 1jl5_A Outer protein YOPM; leu 99.9 1E-22 3.4E-27 227.4 17.1 399 142-725 9-427 (454)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-20 3.7E-25 218.5 29.5 147 142-325 29-180 (562)
27 1o6v_A Internalin A; bacterial 99.9 1E-20 3.6E-25 213.1 27.2 343 116-576 44-386 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-21 9.9E-26 215.7 20.5 222 116-405 40-261 (457)
29 1o6v_A Internalin A; bacterial 99.9 2.2E-20 7.5E-25 210.5 27.2 189 142-384 44-232 (466)
30 4fmz_A Internalin; leucine ric 99.9 3.4E-20 1.2E-24 200.7 23.3 190 143-384 43-232 (347)
31 3bz5_A Internalin-J, INLJ; leu 99.8 3.8E-20 1.3E-24 206.7 21.7 142 437-657 211-352 (457)
32 3v47_A TOLL-like receptor 5B a 99.8 1.6E-19 5.4E-24 203.3 26.7 61 173-237 30-90 (455)
33 4fmz_A Internalin; leucine ric 99.8 2.1E-19 7.1E-24 194.5 26.0 282 115-475 41-322 (347)
34 3v47_A TOLL-like receptor 5B a 99.8 9.1E-20 3.1E-24 205.3 21.4 184 144-350 30-222 (455)
35 2id5_A Lingo-1, leucine rich r 99.8 6.7E-19 2.3E-23 199.4 27.2 317 147-577 14-332 (477)
36 3o6n_A APL1; leucine-rich repe 99.8 7.5E-19 2.6E-23 193.3 21.9 306 142-576 43-350 (390)
37 2id5_A Lingo-1, leucine rich r 99.8 1.9E-18 6.5E-23 195.6 25.5 225 143-407 31-257 (477)
38 3o6n_A APL1; leucine-rich repe 99.8 9.2E-19 3.1E-23 192.6 21.0 307 224-657 43-352 (390)
39 3oja_B Anopheles plasmodium-re 99.8 6E-18 2E-22 196.6 20.8 306 224-656 49-357 (597)
40 3oja_B Anopheles plasmodium-re 99.8 9.3E-18 3.2E-22 194.9 21.9 306 142-576 49-356 (597)
41 2p1m_B Transport inhibitor res 99.8 1.1E-19 3.9E-24 212.1 3.5 162 170-350 63-245 (594)
42 3ogk_B Coronatine-insensitive 99.8 8.2E-19 2.8E-23 204.7 9.1 234 198-473 110-351 (592)
43 2ft3_A Biglycan; proteoglycan, 99.7 4.3E-17 1.5E-21 174.8 20.4 206 286-535 123-330 (332)
44 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.3E-23 203.2 7.3 239 141-408 63-324 (594)
45 1xku_A Decorin; proteoglycan, 99.7 3E-16 1E-20 168.1 22.4 297 145-534 32-328 (330)
46 4fcg_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 169.8 17.9 229 142-405 79-308 (328)
47 4fcg_A Uncharacterized protein 99.7 1.7E-16 5.9E-21 169.2 17.4 222 117-383 80-311 (328)
48 1xku_A Decorin; proteoglycan, 99.7 1.8E-15 6.2E-20 162.0 23.6 294 119-473 32-328 (330)
49 3ogk_B Coronatine-insensitive 99.7 9.3E-18 3.2E-22 195.7 5.0 59 284-348 268-326 (592)
50 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-15 5.1E-20 162.8 20.3 294 119-474 34-330 (332)
51 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-15 8.1E-20 172.9 22.9 256 144-536 40-295 (622)
52 3g06_A SSPH2 (leucine-rich rep 99.6 3.2E-15 1.1E-19 171.7 18.6 255 438-799 40-295 (622)
53 3zyj_A Leucine-rich repeat-con 99.6 9.6E-15 3.3E-19 163.0 22.0 224 143-407 63-288 (440)
54 3zyi_A Leucine-rich repeat-con 99.6 1.3E-14 4.3E-19 162.7 22.5 225 143-408 74-300 (452)
55 3zyi_A Leucine-rich repeat-con 99.6 9.7E-15 3.3E-19 163.6 20.4 227 118-384 75-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.6 7.4E-15 2.5E-19 163.9 19.2 227 118-384 64-290 (440)
57 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.9E-19 157.3 18.4 176 142-350 29-208 (353)
58 2z80_A TOLL-like receptor 2, v 99.6 1.7E-14 5.9E-19 155.9 18.2 259 143-452 51-315 (353)
59 1ogq_A PGIP-2, polygalacturona 99.6 1.8E-14 6.1E-19 152.6 17.0 251 173-511 50-305 (313)
60 1z7x_W Ribonuclease inhibitor; 99.6 6.3E-17 2.2E-21 182.4 -2.1 212 118-350 3-237 (461)
61 2z66_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 151.3 17.1 229 143-407 27-257 (306)
62 1ogq_A PGIP-2, polygalacturona 99.6 6.8E-15 2.3E-19 155.9 12.2 62 170-237 98-160 (313)
63 3o53_A Protein LRIM1, AGAP0063 99.6 4E-15 1.4E-19 158.2 9.4 88 437-540 213-301 (317)
64 2xwt_C Thyrotropin receptor; s 99.6 5.6E-14 1.9E-18 142.7 16.4 177 144-349 31-214 (239)
65 1ozn_A Reticulon 4 receptor; N 99.5 9.3E-14 3.2E-18 145.2 17.9 108 284-407 127-234 (285)
66 2z66_A Variable lymphocyte rec 99.5 5.4E-14 1.9E-18 148.8 15.2 227 117-384 27-259 (306)
67 1z7x_W Ribonuclease inhibitor; 99.5 4.8E-16 1.7E-20 175.1 -1.1 62 173-237 3-67 (461)
68 1ozn_A Reticulon 4 receptor; N 99.5 2.2E-13 7.7E-18 142.3 18.7 204 143-384 31-236 (285)
69 2xwt_C Thyrotropin receptor; s 99.5 8.8E-14 3E-18 141.2 15.0 217 274-578 21-239 (239)
70 4ay9_X Follicle-stimulating ho 99.5 4E-13 1.4E-17 144.8 19.9 233 130-407 20-255 (350)
71 4ay9_X Follicle-stimulating ho 99.5 4.5E-13 1.5E-17 144.4 18.0 154 283-473 101-255 (350)
72 3o53_A Protein LRIM1, AGAP0063 99.5 5.1E-14 1.7E-18 149.6 7.1 216 495-799 32-248 (317)
73 2z62_A TOLL-like receptor 4, v 99.4 3.4E-12 1.1E-16 132.6 18.8 109 283-407 121-233 (276)
74 1p9a_G Platelet glycoprotein I 99.4 2.3E-12 7.9E-17 134.5 16.9 198 141-384 7-206 (290)
75 2o6q_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 131.9 18.1 173 145-350 17-191 (270)
76 2o6q_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 131.4 18.4 197 120-351 18-216 (270)
77 1h6u_A Internalin H; cell adhe 99.4 1.8E-12 6.2E-17 136.7 16.0 168 141-350 38-205 (308)
78 3oja_A Leucine-rich immune mol 99.4 4.9E-13 1.7E-17 150.5 12.1 59 437-507 213-272 (487)
79 2ast_B S-phase kinase-associat 99.4 1.2E-13 4.1E-18 148.3 5.9 84 144-239 70-155 (336)
80 3oja_A Leucine-rich immune mol 99.4 9.3E-13 3.2E-17 148.2 12.9 37 762-799 212-248 (487)
81 1h6u_A Internalin H; cell adhe 99.4 4.7E-12 1.6E-16 133.5 17.0 193 116-355 39-231 (308)
82 2ast_B S-phase kinase-associat 99.4 2.1E-13 7.2E-18 146.4 5.5 107 145-277 48-156 (336)
83 1p9a_G Platelet glycoprotein I 99.4 9.6E-12 3.3E-16 129.8 17.1 197 170-407 7-204 (290)
84 3rfs_A Internalin B, repeat mo 99.4 3.9E-12 1.3E-16 131.7 13.5 176 141-350 38-215 (272)
85 2z62_A TOLL-like receptor 4, v 99.3 1.2E-11 4.1E-16 128.4 15.4 201 144-384 28-235 (276)
86 1wwl_A Monocyte differentiatio 99.3 7.4E-13 2.5E-17 140.2 5.7 61 286-350 149-211 (312)
87 3rfs_A Internalin B, repeat mo 99.3 2E-11 6.9E-16 126.3 15.5 108 284-407 107-214 (272)
88 1wwl_A Monocyte differentiatio 99.3 6.1E-12 2.1E-16 133.1 11.0 87 142-238 93-185 (312)
89 3m19_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 119.4 14.9 59 173-236 35-93 (251)
90 1h6t_A Internalin B; cell adhe 99.2 1.1E-10 3.9E-15 121.7 14.3 167 142-350 44-210 (291)
91 1h6t_A Internalin B; cell adhe 99.2 1E-10 3.5E-15 122.1 13.0 145 171-350 44-188 (291)
92 1m9s_A Internalin B; cell inva 99.2 1E-10 3.6E-15 134.1 13.2 168 141-350 40-207 (605)
93 3m19_A Variable lymphocyte rec 99.2 2.9E-10 1E-14 115.9 15.2 175 173-384 14-190 (251)
94 4ezg_A Putative uncharacterize 99.1 1.6E-10 5.6E-15 112.9 11.5 129 142-297 42-170 (197)
95 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.8E-15 123.3 9.8 138 143-299 90-237 (310)
96 2ca6_A RAN GTPase-activating p 99.1 4.7E-12 1.6E-16 138.6 -0.9 193 142-350 30-254 (386)
97 1m9s_A Internalin B; cell inva 99.1 2.5E-10 8.6E-15 131.0 12.4 167 116-324 41-207 (605)
98 4glp_A Monocyte differentiatio 99.1 1.8E-10 6.3E-15 121.6 10.4 203 172-407 90-303 (310)
99 2ca6_A RAN GTPase-activating p 99.1 2.6E-11 8.8E-16 132.7 2.8 38 437-475 273-314 (386)
100 4ezg_A Putative uncharacterize 99.1 8.6E-10 3E-14 107.8 12.6 127 196-349 40-168 (197)
101 3cvr_A Invasion plasmid antige 99.0 1.7E-09 5.8E-14 122.6 15.8 180 119-350 60-240 (571)
102 1xeu_A Internalin C; cellular 99.0 5.8E-10 2E-14 114.4 9.0 77 263-350 106-182 (263)
103 1xeu_A Internalin C; cellular 99.0 3.5E-09 1.2E-13 108.6 12.6 100 262-384 84-183 (263)
104 3goz_A Leucine-rich repeat-con 99.0 2E-10 7E-15 124.2 3.5 117 286-409 138-264 (362)
105 3cvr_A Invasion plasmid antige 98.9 1.8E-09 6E-14 122.5 9.6 180 565-799 59-241 (571)
106 2o6s_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 101.7 12.6 132 172-350 27-158 (208)
107 2v9t_B SLIT homolog 2 protein 98.9 1.3E-08 4.6E-13 101.0 13.4 59 173-236 32-90 (220)
108 2v70_A SLIT-2, SLIT homolog 2 98.9 1.3E-08 4.5E-13 101.1 13.2 78 147-236 14-91 (220)
109 3goz_A Leucine-rich repeat-con 98.9 5.2E-10 1.8E-14 120.9 2.8 64 286-350 196-263 (362)
110 2xot_A Amphoterin-induced prot 98.9 1.1E-08 3.8E-13 110.3 13.1 84 147-243 21-104 (361)
111 3sb4_A Hypothetical leucine ri 98.9 1.4E-08 4.7E-13 108.1 13.4 102 285-404 225-327 (329)
112 2xot_A Amphoterin-induced prot 98.8 1.9E-08 6.4E-13 108.5 13.5 84 144-237 39-123 (361)
113 2v9t_B SLIT homolog 2 protein 98.8 5.2E-08 1.8E-12 96.8 14.7 90 143-243 31-120 (220)
114 3e6j_A Variable lymphocyte rec 98.8 3.3E-08 1.1E-12 98.9 13.4 59 284-349 110-168 (229)
115 3e6j_A Variable lymphocyte rec 98.8 4.3E-08 1.5E-12 98.1 13.8 58 262-324 111-169 (229)
116 2o6s_A Variable lymphocyte rec 98.8 5.2E-08 1.8E-12 95.9 14.2 92 141-243 25-116 (208)
117 2v70_A SLIT-2, SLIT homolog 2 98.8 5.3E-08 1.8E-12 96.7 14.3 148 176-350 14-163 (220)
118 1dce_A Protein (RAB geranylger 98.8 2.3E-10 7.7E-15 130.6 -3.8 204 170-403 346-565 (567)
119 2ell_A Acidic leucine-rich nuc 98.8 2.1E-08 7.2E-13 95.0 9.9 81 143-236 23-105 (168)
120 2ell_A Acidic leucine-rich nuc 98.7 2.5E-08 8.5E-13 94.5 9.1 135 171-356 22-162 (168)
121 3sb4_A Hypothetical leucine ri 98.7 4E-08 1.4E-12 104.5 9.4 34 313-349 100-133 (329)
122 2je0_A Acidic leucine-rich nuc 98.6 3E-08 1E-12 91.8 6.5 36 312-348 111-148 (149)
123 2je0_A Acidic leucine-rich nuc 98.6 3.6E-08 1.2E-12 91.3 7.0 59 171-236 40-98 (149)
124 1a9n_A U2A', U2A'; complex (nu 98.6 5.2E-08 1.8E-12 93.0 8.2 84 141-237 16-99 (176)
125 2a5y_B CED-4; apoptosis; HET: 98.6 3.3E-09 1.1E-13 121.0 -1.2 97 1-105 328-469 (549)
126 1a9n_A U2A', U2A'; complex (nu 98.5 1.5E-07 5E-12 89.9 8.4 129 262-408 18-150 (176)
127 2wfh_A SLIT homolog 2 protein 98.5 8.1E-07 2.8E-11 86.0 11.8 77 147-237 13-89 (193)
128 1w8a_A SLIT protein; signaling 98.4 1.3E-06 4.5E-11 84.5 11.7 78 147-236 11-88 (192)
129 4fdw_A Leucine rich hypothetic 98.4 2.9E-05 9.8E-10 84.3 23.1 212 143-405 112-330 (401)
130 2wfh_A SLIT homolog 2 protein 98.4 1.9E-06 6.4E-11 83.4 12.1 58 176-243 13-70 (193)
131 2o6r_A Variable lymphocyte rec 98.4 2.1E-06 7.3E-11 81.8 12.3 59 173-236 28-86 (177)
132 1w8a_A SLIT protein; signaling 98.4 1.5E-06 5.2E-11 84.0 11.3 107 121-242 11-117 (192)
133 4fdw_A Leucine rich hypothetic 98.4 2.1E-05 7.2E-10 85.3 20.6 238 118-408 113-355 (401)
134 4b8c_D Glucose-repressible alc 98.3 1.3E-07 4.3E-12 111.5 3.0 109 170-300 221-330 (727)
135 2o6r_A Variable lymphocyte rec 98.3 3.2E-06 1.1E-10 80.5 12.1 60 175-243 9-68 (177)
136 1dce_A Protein (RAB geranylger 98.3 1.9E-06 6.4E-11 98.2 11.0 204 141-380 346-567 (567)
137 1ds9_A Outer arm dynein; leuci 98.3 4.8E-08 1.6E-12 95.3 -2.7 36 197-236 45-80 (198)
138 4b8c_D Glucose-repressible alc 98.2 1.2E-06 4.1E-11 103.2 8.1 113 196-332 220-333 (727)
139 1ds9_A Outer arm dynein; leuci 98.1 7E-08 2.4E-12 94.2 -5.5 127 170-320 45-180 (198)
140 2r9u_A Variable lymphocyte rec 98.0 1.7E-05 5.8E-10 75.1 9.7 77 147-236 15-91 (174)
141 1vt4_I APAF-1 related killer D 98.0 6.3E-07 2.1E-11 104.6 -0.7 57 1-72 325-384 (1221)
142 4fs7_A Uncharacterized protein 98.0 0.00021 7.2E-09 77.7 19.3 80 437-534 296-375 (394)
143 4fs7_A Uncharacterized protein 98.0 4.6E-05 1.6E-09 82.9 13.7 51 623-675 320-373 (394)
144 3e4g_A ATP synthase subunit S, 98.0 4.6E-06 1.6E-10 77.6 4.8 37 315-353 62-98 (176)
145 3sfz_A APAF-1, apoptotic pepti 98.0 1.6E-06 5.4E-11 110.1 1.7 70 1-72 319-392 (1249)
146 3g39_A Variable lymphocyte rec 98.0 2.9E-05 1E-09 73.1 10.1 65 173-243 30-94 (170)
147 3e4g_A ATP synthase subunit S, 98.0 6E-06 2E-10 76.9 5.0 90 286-388 61-154 (176)
148 2r9u_A Variable lymphocyte rec 97.9 3.4E-05 1.2E-09 72.9 10.2 102 121-237 15-116 (174)
149 3g39_A Variable lymphocyte rec 97.9 3E-05 1E-09 73.0 9.5 102 174-297 10-113 (170)
150 3un9_A NLR family member X1; l 97.6 5.6E-06 1.9E-10 88.9 -0.6 11 373-383 239-249 (372)
151 2ra8_A Uncharacterized protein 97.6 3.1E-05 1.1E-09 82.4 4.3 65 284-350 250-317 (362)
152 2ra8_A Uncharacterized protein 97.5 0.00012 4.1E-09 77.9 7.6 143 171-325 170-318 (362)
153 4gt6_A Cell surface protein; l 97.5 0.012 4.1E-07 63.6 23.1 83 141-234 84-168 (394)
154 3un9_A NLR family member X1; l 97.4 1.1E-05 3.7E-10 86.7 -2.3 13 338-350 237-249 (372)
155 2ifg_A High affinity nerve gro 97.4 0.00046 1.6E-08 73.5 10.0 61 171-235 29-89 (347)
156 2ifg_A High affinity nerve gro 97.4 0.0004 1.4E-08 74.0 9.3 85 198-297 29-114 (347)
157 1z6t_A APAF-1, apoptotic prote 97.1 9.9E-05 3.4E-09 85.1 1.1 70 1-72 319-392 (591)
158 4gt6_A Cell surface protein; l 97.0 0.047 1.6E-06 58.9 21.3 79 145-234 65-145 (394)
159 4h09_A Hypothetical leucine ri 96.7 0.24 8.2E-06 52.9 24.0 79 313-406 216-294 (379)
160 4h09_A Hypothetical leucine ri 96.6 0.051 1.7E-06 58.3 17.6 33 313-348 45-77 (379)
161 3rw6_A Nuclear RNA export fact 95.4 0.013 4.4E-07 58.8 4.9 63 172-237 169-231 (267)
162 3rw6_A Nuclear RNA export fact 95.1 0.012 4.1E-07 59.0 3.7 60 285-350 169-230 (267)
163 1io0_A Tropomodulin; LRR prote 94.4 0.022 7.5E-07 54.0 3.5 64 286-350 93-161 (185)
164 1io0_A Tropomodulin; LRR prote 93.7 0.023 8E-07 53.7 2.2 63 284-347 63-128 (185)
165 3rfe_A Platelet glycoprotein I 81.9 1.1 3.9E-05 39.0 4.0 33 622-654 30-65 (130)
166 3rfe_A Platelet glycoprotein I 80.4 0.64 2.2E-05 40.7 1.8 50 626-675 11-62 (130)
167 1pgv_A TMD-1, tropomodulin TMD 41.7 14 0.00048 34.6 2.8 12 286-297 70-81 (197)
168 2vda_B Maltoporin; sugar trans 34.4 20 0.00067 20.2 1.5 15 2-16 11-25 (28)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-35 Score=350.73 Aligned_cols=557 Identities=15% Similarity=0.044 Sum_probs=363.6
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccc-cccccccccccCCCCEEEecCCCCCcccCCh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEK-ISCSQLRAESFLRLRNLKVESCEKLTHIFSF 219 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 219 (869)
..+++|++|+++++.--..++.. .....+++|++|+++++ .+.. .+... .+.+++|++|++++|. ++..++.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~~~~--~~~l~~L~~L~Ls~n~-l~~~~~~ 169 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTL---TSLGSCSGLKFLNVSSN-TLDFPGKVSG--GLKLNSLEVLDLSANS-ISGANVV 169 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGG---GGGGGCTTCCEEECCSS-EEECCSSCCS--CCCCTTCSEEECCSSC-CEEETHH
T ss_pred ccCCCCCEEECCCCcCCCcCCCh---HHHhCCCCCCEEECcCC-ccCCcCCHHH--hccCCCCCEEECCCCc-cCCcCCh
Confidence 67888899998887332334431 01257888889988887 3332 22210 1478888999998884 6655431
Q ss_pred h--hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccc
Q 040040 220 S--ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAIN 297 (869)
Q Consensus 220 ~--~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~ 297 (869)
. .++++++|++|++++|.. .... ....+++|++|+++++.-...++.+..+++|++|++++|.
T Consensus 170 ~~~~~~~l~~L~~L~Ls~n~l-~~~~--------------~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 170 GWVLSDGCGELKHLAISGNKI-SGDV--------------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp HHHHTTCCTTCCEEECCSSEE-ESCC--------------BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred hhhhhccCCCCCEEECCCCcc-cccC--------------CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 1 167888899998888752 2211 1245888999999887655556667778889999998887
Q ss_pred ccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccc-cccccccccccccccc-ccCcc
Q 040040 298 SETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLE-GIVFPEEMIEEERKDI-VFPQL 375 (869)
Q Consensus 298 l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~-~i~~~~~~~~~~~~~~-~~~~L 375 (869)
+... .|..++.+++|++|++++|..... .|. ..+++|++|++++|. +. .++.. .. .+++|
T Consensus 235 l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-~~~---~~l~~L~~L~L~~n~-l~~~ip~~---------~~~~~~~L 296 (768)
T 3rgz_A 235 LSGD----FSRAISTCTELKLLNISSNQFVGP-IPP---LPLKSLQYLSLAENK-FTGEIPDF---------LSGACDTL 296 (768)
T ss_dssp CCSC----HHHHTTTCSSCCEEECCSSCCEES-CCC---CCCTTCCEEECCSSE-EEESCCCC---------SCTTCTTC
T ss_pred CCCc----ccHHHhcCCCCCEEECCCCcccCc-cCc---cccCCCCEEECcCCc-cCCccCHH---------HHhhcCcC
Confidence 5432 344455688899999988754333 232 268889999988864 43 33221 22 34889
Q ss_pred ceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCccccc
Q 040040 376 NFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIF 455 (869)
Q Consensus 376 ~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 455 (869)
++|+++++. +..........+++|+.|++.+|.-...+|... ...+++|++|++++|. +...+
T Consensus 297 ~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---------------l~~l~~L~~L~Ls~n~-l~~~~ 359 (768)
T 3rgz_A 297 TGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDT---------------LLKMRGLKVLDLSFNE-FSGEL 359 (768)
T ss_dssp SEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEEECCHHH---------------HTTCTTCCEEECCSSE-EEECC
T ss_pred CEEECcCCc-CCCccchHHhcCCCccEEECCCCcccCcCCHHH---------------HhcCCCCCEEeCcCCc-cCccc
Confidence 999998886 554433445568889999988764333444210 1236889999998875 44345
Q ss_pred chhHHhhcC-CccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEec
Q 040040 456 PHNMFARFL-KLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFE 534 (869)
Q Consensus 456 ~~~~~~~l~-~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~ 534 (869)
|... ..++ +|++|++++|.....++.. .....+++|++|++++|.--..+ |..+..+++|++|++++
T Consensus 360 p~~l-~~l~~~L~~L~Ls~N~l~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 360 PESL-TNLSASLLTLDLSSNNFSGPILPN-------LCQNPKNTLQELYLQNNGFTGKI----PPTLSNCSELVSLHLSF 427 (768)
T ss_dssp CTTH-HHHTTTCSEEECCSSEEEEECCTT-------TTCSTTCCCCEEECCSSEEEEEC----CGGGGGCTTCCEEECCS
T ss_pred cHHH-HhhhcCCcEEEccCCCcCCCcChh-------hhhcccCCccEEECCCCcccccc----CHHHhcCCCCCEEECcC
Confidence 6654 4555 8999999986543334321 10013678999999997544444 78899999999999998
Q ss_pred CCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccC-cccccccee
Q 040040 535 CQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNP-SFGSKSLVM 612 (869)
Q Consensus 535 c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~-~~~~~~~~~ 612 (869)
| .+....|.++ ..+++|+.|++++|.....++..... +++|++|++++ ++. .++....
T Consensus 428 N-~l~~~~p~~l---------------~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~p~~l~-- 487 (768)
T 3rgz_A 428 N-YLSGTIPSSL---------------GSLSKLRDLKLWLNMLEGEIPQELMY--VKTLETLILDFNDLTGEIPSGLS-- 487 (768)
T ss_dssp S-EEESCCCGGG---------------GGCTTCCEEECCSSCCCSCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGG--
T ss_pred C-cccCcccHHH---------------hcCCCCCEEECCCCcccCcCCHHHcC--CCCceEEEecCCcccCcCCHHHh--
Confidence 5 5654446544 34789999999998766566655544 48999999998 766 3443221
Q ss_pred eEeeecceeccccceeeeecccceeeecc---ccccceEEEe-ecCCCccchHHHHHhccccceEEEE---EE-ecccc-
Q 040040 613 LLCLIGQQVFPNLEELTLSKYIFTTWRQA---QFHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLK---VE-EHAEG- 683 (869)
Q Consensus 613 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l-~~~~~~~~p~~~l~~l~~L~~L~l~---~~-~~~~~- 683 (869)
.+++|++|++++|.+.+..+. .+++|++|++ .|...+.+|.. ++.+++|+.|+++ +. .....
T Consensus 488 --------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 488 --------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp --------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGG
T ss_pred --------cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHH
Confidence 368999999999998865553 3789999999 45555577765 7889999999987 32 11111
Q ss_pred --cccccEEEcCc-----------------------------------ccccc------ccccCCCCCcccccCCccEEE
Q 040040 684 --IAQIKSLKLNK-----------------------------------LWFIK------EHLWNPDSKLDSFLQNLEFLE 720 (869)
Q Consensus 684 --~~~L~~L~l~~-----------------------------------~~~L~------~~l~~~~~~~~~~l~~L~~L~ 720 (869)
...+..+.+.. +..+. ..+.+..+.....+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 11111111110 00000 011112233456789999999
Q ss_pred Eecccchhh-ccccee-EecccchhccccCCCcceeecCCeeeeCCCcceEeeccCCCccccCCCCcCCCcceEEEccCC
Q 040040 721 VKECALSLI-SLRIEI-VFSKLKWLFLESSGSITSFCSGNYAISFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKL 798 (869)
Q Consensus 721 l~~c~~~l~-~l~~~~-~~~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~ 798 (869)
+++|. +. .+|... .+++|+.|++.++.--..++. ....+++|+.|++++|......|..+...+.|+.++++.|
T Consensus 639 Ls~N~--l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 639 MSYNM--LSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CCSSC--CBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CcCCc--ccccCCHHHhccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99997 65 445442 466677777666432223332 2346789999999999777688998999999999999954
Q ss_pred C
Q 040040 799 D 799 (869)
Q Consensus 799 ~ 799 (869)
+
T Consensus 715 ~ 715 (768)
T 3rgz_A 715 N 715 (768)
T ss_dssp E
T ss_pred c
Confidence 3
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-33 Score=336.38 Aligned_cols=558 Identities=15% Similarity=0.070 Sum_probs=383.3
Q ss_pred HhccCceeeeccccCcccccc--ccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccc
Q 040040 116 QLKGLEELWLDEVQGVENVVY--ELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQ 193 (869)
Q Consensus 116 ~l~~l~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 193 (869)
.++++++|+++++.-...++. .+ ..+++|++|+++++.-...++... ...+++|++|+++++ ++.+.....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~~~ 170 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSL--GSCSGLKFLNVSSNTLDFPGKVSG----GLKLNSLEVLDLSAN-SISGANVVG 170 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGG--GGCTTCCEEECCSSEEECCSSCCS----CCCCTTCSEEECCSS-CCEEETHHH
T ss_pred cCCCCCEEECCCCcCCCcCCChHHH--hCCCCCCEEECcCCccCCcCCHHH----hccCCCCCEEECCCC-ccCCcCChh
Confidence 467899999988653333443 34 679999999999983222222211 257899999999998 565543221
Q ss_pred -ccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccC
Q 040040 194 -LRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKS 272 (869)
Q Consensus 194 -~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 272 (869)
...+.+++|++|++++|. +....+ ...+++|++|++++|.....++ .+..+++|++|++++
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~--------------~l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNK-ISGDVD---VSRCVNLEFLDVSSNNFSTGIP--------------FLGDCSALQHLDISG 232 (768)
T ss_dssp HHHTTCCTTCCEEECCSSE-EESCCB---CTTCTTCCEEECCSSCCCSCCC--------------BCTTCCSCCEEECCS
T ss_pred hhhhccCCCCCEEECCCCc-ccccCC---cccCCcCCEEECcCCcCCCCCc--------------ccccCCCCCEEECcC
Confidence 013578999999999995 555433 4789999999999987544344 256799999999999
Q ss_pred CCCccccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccc
Q 040040 273 LPQLRSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCM 351 (869)
Q Consensus 273 ~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 351 (869)
+.--..++ .+..+++|++|++++|.+... .|.. .+++|++|++++|. ++...|......+++|++|++++|.
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~--~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGP----IPPL--PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEES----CCCC--CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCc----cCcc--ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc
Confidence 76433333 367889999999999985432 2321 58899999999975 4422354434446999999999974
Q ss_pred cccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeecc
Q 040040 352 DLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSF 431 (869)
Q Consensus 352 ~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~ 431 (869)
+...... ....+++|++|+++++.-...++......+++|++|++.+|.-...+|..
T Consensus 306 -l~~~~p~--------~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-------------- 362 (768)
T 3rgz_A 306 -FYGAVPP--------FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-------------- 362 (768)
T ss_dssp -EEECCCG--------GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT--------------
T ss_pred -CCCccch--------HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH--------------
Confidence 4433222 35688999999999987333666554567899999999887433233321
Q ss_pred Ccccccc-cccEEEEeccCCcccccchhHHh-hcCCccEEEEcccCCccccccccccCccccccccccccceeecccccc
Q 040040 432 FNEKSFC-KLKLMEVIFCKSLWTIFPHNMFA-RFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPK 509 (869)
Q Consensus 432 ~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (869)
...++ +|+.|++++|. +...+|..... .+++|++|++++|.....++. .. +.+++|++|+++++.-
T Consensus 363 --l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-------~l--~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 363 --LTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-------TL--SNCSELVSLHLSFNYL 430 (768)
T ss_dssp --HHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-------GG--GGCTTCCEEECCSSEE
T ss_pred --HHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCH-------HH--hcCCCCCEEECcCCcc
Confidence 01134 89999999886 43334443321 278999999999754434432 12 4789999999999753
Q ss_pred cccccccCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCC
Q 040040 510 LTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLE 589 (869)
Q Consensus 510 L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 589 (869)
-..+ |..+..+++|++|++++| .+...+|..+ ..+++|++|+++++......+.....
T Consensus 431 ~~~~----p~~l~~l~~L~~L~L~~n-~l~~~~p~~~---------------~~l~~L~~L~L~~N~l~~~~p~~l~~-- 488 (768)
T 3rgz_A 431 SGTI----PSSLGSLSKLRDLKLWLN-MLEGEIPQEL---------------MYVKTLETLILDFNDLTGEIPSGLSN-- 488 (768)
T ss_dssp ESCC----CGGGGGCTTCCEEECCSS-CCCSCCCGGG---------------GGCTTCCEEECCSSCCCSCCCGGGGG--
T ss_pred cCcc----cHHHhcCCCCCEEECCCC-cccCcCCHHH---------------cCCCCceEEEecCCcccCcCCHHHhc--
Confidence 3344 788999999999999986 4554447544 34789999999999766566655544
Q ss_pred CCCCceeeecc-ccC-ccccccceeeEeeecceeccccceeeeecccceeeeccc---cccceEEEe-ecCCCccchHHH
Q 040040 590 CPERANLIFQL-KNP-SFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGL 663 (869)
Q Consensus 590 ~~~L~~L~l~~-~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l-~~~~~~~~p~~~ 663 (869)
+++|+.|++++ ++. .+|.... .+++|++|++++|.+.+..+.. +++|+.|++ .|...+.+|.++
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~----------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIG----------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGG----------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEEccCCccCCcCChHHh----------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 49999999999 776 4554321 3789999999999999766644 789999999 555666888764
Q ss_pred HHhccccceEE---------E-------------------------------------E-------EEecccccccccEE
Q 040040 664 LQNIHNLEKLV---------L-------------------------------------K-------VEEHAEGIAQIKSL 690 (869)
Q Consensus 664 l~~l~~L~~L~---------l-------------------------------------~-------~~~~~~~~~~L~~L 690 (869)
.. ...+..+. + . .......+++|+.|
T Consensus 559 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 559 FK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred hc-ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 33 22221110 0 0 00112236789999
Q ss_pred EcCccccccccccCCCCCcccccCCccEEEEecccchhh-ccccee-EecccchhccccCCCcc-eeecCCeeeeCCCcc
Q 040040 691 KLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLI-SLRIEI-VFSKLKWLFLESSGSIT-SFCSGNYAISFPSLE 767 (869)
Q Consensus 691 ~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~-~l~~~~-~~~~L~~L~l~~l~~l~-~~~~~~~~~~~~~L~ 767 (869)
+++++ .+.+..|..++.+++|+.|++++|. +. .+|+.. .+++|+.|++.++. +. .++. ....+++|+
T Consensus 638 dLs~N-----~l~g~ip~~l~~l~~L~~L~Ls~N~--l~g~ip~~l~~L~~L~~LdLs~N~-l~g~ip~--~l~~l~~L~ 707 (768)
T 3rgz_A 638 DMSYN-----MLSGYIPKEIGSMPYLFILNLGHND--ISGSIPDEVGDLRGLNILDLSSNK-LDGRIPQ--AMSALTMLT 707 (768)
T ss_dssp ECCSS-----CCBSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSC-CEECCCG--GGGGCCCCS
T ss_pred ECcCC-----cccccCCHHHhccccCCEEeCcCCc--cCCCCChHHhCCCCCCEEECCCCc-ccCcCCh--HHhCCCCCC
Confidence 99987 3334556678899999999999997 65 455442 45666666666543 33 2222 223578899
Q ss_pred eEeeccCCCccccCCC
Q 040040 768 VLIVENCPKLNTFSAG 783 (869)
Q Consensus 768 ~L~i~~c~~~~~~~~~ 783 (869)
+|++++|+.-...|.+
T Consensus 708 ~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EEECCSSEEEEECCSS
T ss_pred EEECcCCcccccCCCc
Confidence 9999999765566654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.2e-30 Score=306.39 Aligned_cols=545 Identities=16% Similarity=0.132 Sum_probs=277.1
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
+++++|++++. .+..+..... ..+++|++|+++++ .+..++... +..+++|++|+++++ +++.++... .+
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~L~L~~n-~l~~l~~~~--~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANF-TRYSQLTSLDVGFN-TISKLEPEL----CQKLPMLKVLNLQHN-ELSQLSDKT--FA 94 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGG-GGGTTCSEEECCSS-CCCCCCTTH----HHHCTTCCEEECCSS-CCCCCCTTT--TT
T ss_pred CCCcEEECCCC-CCCCcCHHHH-hCCCcCcEEECCCC-ccCccCHHH----HhcccCcCEEECCCC-ccCccChhh--hc
Confidence 45666666653 2333332211 45666666666665 343332211 234566666666665 455554432 33
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+++|++|++++| +++.+++ ..++++++|++|+++++.. ...+. ..+..+++|++|+++++. +.
T Consensus 95 ~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l-~~~~~------------~~~~~l~~L~~L~L~~n~-l~ 158 (680)
T 1ziw_A 95 FCTNLTELHLMSN-SIQKIKN-NPFVKQKNLITLDLSHNGL-SSTKL------------GTQVQLENLQELLLSNNK-IQ 158 (680)
T ss_dssp TCTTCSEEECCSS-CCCCCCS-CTTTTCTTCCEEECCSSCC-SCCCC------------CSSSCCTTCCEEECCSSC-CC
T ss_pred cCCCCCEEECCCC-ccCccCh-hHccccCCCCEEECCCCcc-cccCc------------hhhcccccCCEEEccCCc-cc
Confidence 5666666666666 3555543 3456666666666666542 22211 123346666666666543 22
Q ss_pred cccc----cccCCCcCEEEeccccccccccCCCCCccccc---------------------------CCceEEEEecCCC
Q 040040 278 SFCS----VVAFPNLETLKLSAINSETIWHNQLPAMSSCI---------------------------QNLTRLIVHGCNN 326 (869)
Q Consensus 278 ~~~~----~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l---------------------------~~L~~L~l~~c~~ 326 (869)
.++. ....++|++|++++|.+..+.... +..+ ++|+.|+++++ .
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~ 233 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-Q 233 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTG----GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-C
T ss_pred ccCHHHhhccccccccEEECCCCcccccChhh----hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-c
Confidence 2221 123356666666666544332211 1122 45666666654 2
Q ss_pred CccccChhhHhccC--CccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEE
Q 040040 327 LKFLFSTSLVRSFV--QLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLR 404 (869)
Q Consensus 327 l~~l~~~~~~~~L~--~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~ 404 (869)
+....+ ..+..++ +|++|+++++ .++.+... ....+++|++|+++++. +..+.......+++|+.|+
T Consensus 234 l~~~~~-~~~~~l~~~~L~~L~Ls~n-~l~~~~~~--------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 234 LSTTSN-TTFLGLKWTNLTMLDLSYN-NLNVVGND--------SFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp CCEECT-TTTGGGGGSCCCEEECTTS-CCCEECTT--------TTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEE
T ss_pred ccccCh-hHhhccCcCCCCEEECCCC-CcCccCcc--------cccCcccccEeeCCCCc-cCccChhhhcCCCCccEEe
Confidence 333322 2344443 3777777664 34433221 23456677777777664 5555444445566777777
Q ss_pred EccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCC-ccccccc
Q 040040 405 MAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGS-LEEIFNL 483 (869)
Q Consensus 405 l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~i~~~ 483 (869)
+.++..-..++...+. .+ .......+++|++|++++|. +.. ++...+..+++|++|++++|.. +..++..
T Consensus 303 L~~~~~~~~~~~~~lp------~i-~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~ 373 (680)
T 1ziw_A 303 LKRSFTKQSISLASLP------KI-DDFSFQWLKCLEHLNMEDND-IPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373 (680)
T ss_dssp CTTCBCCC------CC------EE-CTTTTTTCTTCCEEECCSCC-BCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred ccchhhhccccccccc------cc-ChhhcccCCCCCEEECCCCc-cCC-CChhHhccccCCcEEECCCCchhhhhcchh
Confidence 7653211111000000 00 00111336778888887765 333 2444566788888888887542 2222210
Q ss_pred cccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccC-ccEEEEEeccCCCCCccee
Q 040040 484 QELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFP-TSVEIVANDVRGNDAATKF 562 (869)
Q Consensus 484 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p-~s~ei~~~~~~~~~~~~~~ 562 (869)
. ... ...++|+.|+++++. +..+ .|..+..+++|++|+++++. +...+| ..+ .
T Consensus 374 ~---f~~---~~~~~L~~L~L~~n~-l~~~---~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~---------------~ 427 (680)
T 1ziw_A 374 T---FVS---LAHSPLHILNLTKNK-ISKI---ESDAFSWLGHLEVLDLGLNE-IGQELTGQEW---------------R 427 (680)
T ss_dssp T---TGG---GTTSCCCEEECTTSC-CCEE---CTTTTTTCTTCCEEECCSSC-CEEECCSGGG---------------T
T ss_pred h---hcc---cccCcCceEECCCCC-CCeE---ChhhhhCCCCCCEEeCCCCc-CccccCcccc---------------c
Confidence 0 000 123578888888753 4444 35677788888888888753 432213 111 1
Q ss_pred eccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCc---cccccceeeEeeecceeccccceeeeecccceee
Q 040040 563 IFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPS---FGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTW 638 (869)
Q Consensus 563 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~---~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 638 (869)
.+++|++|+++++.. ........ ..+++|+.|++++ .+.. .+... ..+++|++|++++|.+..+
T Consensus 428 ~l~~L~~L~Ls~n~l-~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~----------~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 428 GLENIFEIYLSYNKY-LQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPF----------QPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp TCTTCCEEECCSCSE-EECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTT----------TTCTTCCEEECCSSCCCCC
T ss_pred CcccccEEecCCCCc-ceeChhhh-hcCcccccchhccccccccccCCccc----------ccCCCCCEEECCCCCCCcC
Confidence 257788888887753 22222211 1357888888877 5432 22211 1257788888888877776
Q ss_pred eccc---cccceEEEeecCCCccchH--------HHHHhccccceEEEEEEecccccccccEEEcCccccccccccCCCC
Q 040040 639 RQAQ---FHKLKILHFISDGSDFFQV--------GLLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDS 707 (869)
Q Consensus 639 ~~~~---~~~L~~L~l~~~~~~~~p~--------~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~ 707 (869)
.+.. +++|++|++++|....++. ..+.++ ++|+.|+++++ .++ .+ +.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-----------------~~L~~L~L~~N-~l~-~i---~~ 553 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-----------------SHLHILNLESN-GFD-EI---PV 553 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-----------------TTCCEEECCSS-CCC-CC---CT
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-----------------CCCCEEECCCC-CCC-CC---CH
Confidence 6543 5677788875554443321 113444 45555555553 233 22 11
Q ss_pred CcccccCCccEEEEecccchhhccccee--EecccchhccccCCCcceeecCCeeeeCCCcceEeeccCCC
Q 040040 708 KLDSFLQNLEFLEVKECALSLISLRIEI--VFSKLKWLFLESSGSITSFCSGNYAISFPSLEVLIVENCPK 776 (869)
Q Consensus 708 ~~~~~l~~L~~L~l~~c~~~l~~l~~~~--~~~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~c~~ 776 (869)
.....+++|+.|++++|. +..+|... .+++|+.|++.++ +++.+........+++|+.+++++||-
T Consensus 554 ~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNN--LNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred HHcccccCcceeECCCCC--CCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 224456666666666664 55555432 2344555555443 333333211001356677777776653
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.2e-29 Score=293.79 Aligned_cols=542 Identities=15% Similarity=0.120 Sum_probs=280.1
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
+++++|+++++ .++.++... +..+++|++|+++++ .++.+.... .+.+++|++|++++| .++.+|+ ..++
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~l~~-~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAAN----FTRYSQLTSLDVGFN-TISKLEPEL--CQKLPMLKVLNLQHN-ELSQLSD-KTFA 94 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGG----GGGGTTCSEEECCSS-CCCCCCTTH--HHHCTTCCEEECCSS-CCCCCCT-TTTT
T ss_pred CCCcEEECCCC-CCCCcCHHH----HhCCCcCcEEECCCC-ccCccCHHH--HhcccCcCEEECCCC-ccCccCh-hhhc
Confidence 67888888887 565555322 356788888888877 555554332 346788888888887 4777654 3577
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc-ccccCCCcCEEEeccccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSETIW 302 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~ 302 (869)
++++|++|+++++. +..++. ..+..+++|++|+++++.-....+ .+..+++|++|++++|.+..+.
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKN------------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCS------------CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred cCCCCCEEECCCCc-cCccCh------------hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 88888888888765 444441 234557788888887764222222 2456778888888887654432
Q ss_pred cCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeeccc
Q 040040 303 HNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKD 382 (869)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 382 (869)
...+. ...+++|++|+++++ .++.+ ++..+..+++|+.|++.++. +..-... . .......++|+.|++++
T Consensus 162 ~~~~~--~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~~~-l~~~~~~-~----~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 162 SEELD--IFANSSLKKLELSSN-QIKEF-SPGCFHAIGRLFGLFLNNVQ-LGPSLTE-K----LCLELANTSIRNLSLSN 231 (680)
T ss_dssp HHHHG--GGTTCEESEEECTTC-CCCCB-CTTGGGGSSEECEEECTTCC-CHHHHHH-H----HHHHHTTSCCCEEECTT
T ss_pred HHHhh--ccccccccEEECCCC-ccccc-Chhhhhhhhhhhhhhccccc-cChhhHH-H----HHHHhhhccccEEEccC
Confidence 21111 112467888888775 45554 33456677778887776643 2110000 0 00011236778888877
Q ss_pred CccccccCCCcccCCC--CccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHH
Q 040040 383 LAKLTRFCSGNCIELP--SLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMF 460 (869)
Q Consensus 383 ~~~L~~l~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 460 (869)
+. +..........++ +|+.|++++|. ++.++... .+.+++|++|++++|. +... +...+
T Consensus 232 n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~---------------~~~l~~L~~L~L~~n~-l~~~-~~~~~ 292 (680)
T 1ziw_A 232 SQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDS---------------FAWLPQLEYFFLEYNN-IQHL-FSHSL 292 (680)
T ss_dssp SC-CCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTT---------------TTTCTTCCEEECCSCC-BSEE-CTTTT
T ss_pred Cc-ccccChhHhhccCcCCCCEEECCCCC-cCccCccc---------------ccCcccccEeeCCCCc-cCcc-Chhhh
Confidence 64 5544443333333 47777776653 32222110 1225677777777664 3333 33345
Q ss_pred hhcCCccEEEEcccCCcc-----ccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecC
Q 040040 461 ARFLKLQSLIVGACGSLE-----EIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFEC 535 (869)
Q Consensus 461 ~~l~~L~~L~l~~c~~l~-----~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c 535 (869)
..+++|++|+++++..-. .++.+.+ ... +.+++|++|+++++ .+..+ .+..+..+++|++|++++|
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~---~~~--~~l~~L~~L~l~~n-~l~~~---~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDD---FSF--QWLKCLEHLNMEDN-DIPGI---KSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECT---TTT--TTCTTCCEEECCSC-CBCCC---CTTTTTTCTTCCEEECTTC
T ss_pred cCCCCccEEeccchhhhcccccccccccCh---hhc--ccCCCCCEEECCCC-ccCCC---ChhHhccccCCcEEECCCC
Confidence 667777777776642211 1111110 011 35667777777764 33333 2455666777777777665
Q ss_pred C-CcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCc-ccccccee
Q 040040 536 Q-RLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPS-FGSKSLVM 612 (869)
Q Consensus 536 ~-~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~-~~~~~~~~ 612 (869)
. .+..+ |.. .......++|+.|+++++......+.... .+++|+.|++++ .+.. ++....
T Consensus 364 ~~~~~~l-~~~------------~f~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~-- 426 (680)
T 1ziw_A 364 FTSLRTL-TNE------------TFVSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEW-- 426 (680)
T ss_dssp BSCCCEE-CTT------------TTGGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSGGG--
T ss_pred chhhhhc-chh------------hhcccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcccc--
Confidence 3 12222 110 00001124666677666643222222222 236666666666 4431 221110
Q ss_pred eEeeecceeccccceeeeecccceeeeccc---cccceEEEeecCCC---ccchHHHHHhccccceEEEEEEeccccccc
Q 040040 613 LLCLIGQQVFPNLEELTLSKYIFTTWRQAQ---FHKLKILHFISDGS---DFFQVGLLQNIHNLEKLVLKVEEHAEGIAQ 686 (869)
Q Consensus 613 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~---~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 686 (869)
..+++|++|++++|.+..+.+.. +++|+.|++.++.. +.+|.. ++.+++
T Consensus 427 -------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~----------------- 481 (680)
T 1ziw_A 427 -------RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRN----------------- 481 (680)
T ss_dssp -------TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTT-----------------
T ss_pred -------cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cccCCC-----------------
Confidence 02456666666666665544433 45666666633322 233322 344444
Q ss_pred ccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccce----------eEecccchhccccCCCcceeec
Q 040040 687 IKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIE----------IVFSKLKWLFLESSGSITSFCS 756 (869)
Q Consensus 687 L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~----------~~~~~L~~L~l~~l~~l~~~~~ 756 (869)
|+.|+++++ .++ .+ .+.....+++|++|++++|. +..++.. ..+++|+.|++.++ +++.++.
T Consensus 482 L~~L~Ls~N-~l~-~i---~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 482 LTILDLSNN-NIA-NI---NDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp CCEEECCSS-CCC-CC---CTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCEEECCCC-CCC-cC---ChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 445555543 122 11 12223445555555555554 4443211 01233333333321 2333322
Q ss_pred CCeeeeCCCcceEeeccCCCccccCCCC-cCCCcceEEEccCC
Q 040040 757 GNYAISFPSLEVLIVENCPKLNTFSAGV-LKTPRLRAVQNWKL 798 (869)
Q Consensus 757 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~-~~~~~L~~l~~s~~ 798 (869)
+. ...+++|+.|+++++ .++.+|.+. ...++|+.|++++|
T Consensus 554 ~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 554 EV-FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred HH-cccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 11 123466777777666 455555543 45577777777644
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3e-29 Score=293.91 Aligned_cols=294 Identities=17% Similarity=0.123 Sum_probs=162.5
Q ss_pred cccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCC
Q 040040 439 KLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDP 518 (869)
Q Consensus 439 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p 518 (869)
+|+.|++++|. +.. ++...++.+++|++|++++| .+..++.. . ..+++|++|+++++. ++.+ .|
T Consensus 255 ~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n-~l~~lp~~-------l--~~l~~L~~L~l~~n~-l~~~---~~ 318 (606)
T 3t6q_A 255 SVESINLQKHY-FFN-ISSNTFHCFSGLQELDLTAT-HLSELPSG-------L--VGLSTLKKLVLSANK-FENL---CQ 318 (606)
T ss_dssp EEEEEECTTCC-CSS-CCTTTTTTCTTCSEEECTTS-CCSCCCSS-------C--CSCTTCCEEECTTCC-CSBG---GG
T ss_pred ceeEEEeecCc-cCc-cCHHHhccccCCCEEeccCC-ccCCCChh-------h--cccccCCEEECccCC-cCcC---ch
Confidence 67788887764 333 35555677888888888884 45555431 1 367788888888763 3333 24
Q ss_pred CCcccCCCccEEEEecCCCcccccCc-cEEEEEeccCCCCCcceeeccccceEeecCCCCCcee--cCCCCCCCCCCCce
Q 040040 519 RGKLIFPNLVLVRIFECQRLKSIFPT-SVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTF--YSGMHTLECPERAN 595 (869)
Q Consensus 519 ~~~~~l~~L~~L~l~~c~~L~~l~p~-s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~L~~ 595 (869)
..+..+++|++|++++|.....+ |. .+ ..+++|++|+++++..-... +.... .+++|++
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~-~~~~~---------------~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~ 380 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLEL-GTGCL---------------ENLENLRELDLSHDDIETSDCCNLQLR--NLSHLQS 380 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBC-CSSTT---------------TTCTTCCEEECCSSCCCEEEESTTTTT--TCTTCCE
T ss_pred hhhhccCcCCEEECCCCCccccc-chhhh---------------hccCcCCEEECCCCccccccCcchhcc--cCCCCCE
Confidence 56778888888888876433343 32 11 12577888888776543322 22222 3477777
Q ss_pred eeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeecc----ccccceEEEeecCCCccchHHHHHhcccc
Q 040040 596 LIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQA----QFHKLKILHFISDGSDFFQVGLLQNIHNL 670 (869)
Q Consensus 596 L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~p~~~l~~l~~L 670 (869)
|++++ .+...+.... ..+++|++|++++|.+....+. .+++|+.|++++|.....+...+..+++|
T Consensus 381 L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAF---------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp EECCSCSCEEECTTTT---------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred EECCCCcCCcCCHHHh---------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 77777 5544332110 0256777788877777654332 26777777774444433332334555555
Q ss_pred ceEEEEEEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhccccee--EecccchhccccC
Q 040040 671 EKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEI--VFSKLKWLFLESS 748 (869)
Q Consensus 671 ~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~--~~~~L~~L~l~~l 748 (869)
++|+ ++++. +. ......+..+..+++|++|++++|. +..++... .+++|+.|++.++
T Consensus 452 ~~L~-----------------L~~n~-l~-~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 452 QHLN-----------------LQGNH-FP-KGNIQKTNSLQTLGRLEILVLSFCD--LSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp CEEE-----------------CTTCB-CG-GGEECSSCGGGGCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEE-----------------CCCCC-CC-ccccccchhhccCCCccEEECCCCc--cCccChhhhccccCCCEEECCCC
Confidence 5554 44432 11 0000111224455556666666554 44442211 2344444444433
Q ss_pred CCcceeecCCeeeeCCCcceEeeccCCCccccCCCCcCCCcceEEEccCCC
Q 040040 749 GSITSFCSGNYAISFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 749 ~~l~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~~ 799 (869)
+++..... ....+++| .|++++|......|..+...++|+.|++++|+
T Consensus 511 -~l~~~~~~-~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 511 -RLTSSSIE-ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -CCCGGGGG-GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -ccCcCChh-HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 12221111 12245677 88889985544445555667899999998665
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.1e-29 Score=295.27 Aligned_cols=283 Identities=13% Similarity=0.155 Sum_probs=154.3
Q ss_pred cccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCC
Q 040040 439 KLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDP 518 (869)
Q Consensus 439 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p 518 (869)
+++.+.+..+..+....|. +..+++|++|+++++ .+..++.+ ..+++|++|++.+|.- +.+ |
T Consensus 262 ~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~-~~~~l~~l----------~~~~~L~~L~l~~n~l-~~l----p 323 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGV-SIKYLEDV----------PKHFKWQSLSIIRCQL-KQF----P 323 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESC-CCCCCCCC----------CTTCCCSEEEEESCCC-SSC----C
T ss_pred cHhheeccccccccccccc--cccCCCCCEEEecCc-cchhhhhc----------cccccCCEEEcccccC-ccc----c
Confidence 4556666555556554444 566777788877774 34444311 3566777777777643 555 4
Q ss_pred CCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCcee---cCCCCCCCCCCCce
Q 040040 519 RGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTF---YSGMHTLECPERAN 595 (869)
Q Consensus 519 ~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~~ 595 (869)
.+ .+++|++|++++|..+..+ +. ..+++|++|+++++.. ... +.... .+++|++
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~-~~-----------------~~l~~L~~L~ls~n~l-~~~~~~~~~~~--~~~~L~~ 380 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF-KK-----------------VALPSLSYLDLSRNAL-SFSGCCSYSDL--GTNSLRH 380 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC-CC-----------------CCCTTCCEEECCSSCE-EEEEECCHHHH--CCSCCCE
T ss_pred -cC-CCCccceeeccCCcCccch-hh-----------------ccCCCCCEEECcCCcc-CCCcchhhhhc--cCCcccE
Confidence 34 7777777777776544433 21 2356777777766542 211 11111 2356666
Q ss_pred eeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeec-c---ccccceEEEeecCCCc-cchHHHHHhccc
Q 040040 596 LIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQ-A---QFHKLKILHFISDGSD-FFQVGLLQNIHN 669 (869)
Q Consensus 596 L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~---~~~~L~~L~l~~~~~~-~~p~~~l~~l~~ 669 (869)
|++++ .+..++.... .+++|++|++++|.+.+..+ . .+++|+.|++++|... .+|. .+..
T Consensus 381 L~L~~n~l~~~~~~~~----------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~--- 446 (606)
T 3vq2_A 381 LDLSFNGAIIMSANFM----------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLG--- 446 (606)
T ss_dssp EECCSCSEEEECCCCT----------TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTT---
T ss_pred eECCCCccccchhhcc----------CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcC---
Confidence 66666 5444432110 24566666666666655433 1 2556666666333322 2332 2334
Q ss_pred cceEEEEEEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhccccee--Eecccchhcccc
Q 040040 670 LEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEI--VFSKLKWLFLES 747 (869)
Q Consensus 670 L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~--~~~~L~~L~l~~ 747 (869)
+++|++|+++++.--. .+ .+..+..+++|++|++++|. +..++... .+++|+.|++.+
T Consensus 447 --------------l~~L~~L~l~~n~l~~-~~---~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 447 --------------LTSLNTLKMAGNSFKD-NT---LSNVFANTTNLTFLDLSKCQ--LEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp --------------CTTCCEEECTTCEEGG-GE---ECSCCTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS
T ss_pred --------------CCCCCEEECCCCcCCC-cc---hHHhhccCCCCCEEECCCCc--CCccChhhhcccccCCEEECCC
Confidence 4455555555542111 10 12334556666666666664 44443221 345555555555
Q ss_pred CCCcceeecCCeeeeCCCcceEeeccCCCccccCCCCcCCC-cceEEEccCCC
Q 040040 748 SGSITSFCSGNYAISFPSLEVLIVENCPKLNTFSAGVLKTP-RLRAVQNWKLD 799 (869)
Q Consensus 748 l~~l~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~-~L~~l~~s~~~ 799 (869)
+ +++..... ....+++|++|++++| .++.+|.++...| .|+.|++++|+
T Consensus 507 N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 507 N-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp S-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred C-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 4 23332211 1224678999999999 4778888877777 59999998665
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8.3e-29 Score=290.10 Aligned_cols=294 Identities=12% Similarity=0.061 Sum_probs=168.3
Q ss_pred ccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCccc
Q 040040 374 QLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWT 453 (869)
Q Consensus 374 ~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 453 (869)
+|+.|+++++. +..++......+++|+.|++.++ .++.+|.. ...+++|++|++++|. +..
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~----------------l~~l~~L~~L~l~~n~-l~~ 315 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELPSG----------------LVGLSTLKKLVLSANK-FEN 315 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTS-CCSCCCSS----------------CCSCTTCCEEECTTCC-CSB
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCC-ccCCCChh----------------hcccccCCEEECccCC-cCc
Confidence 68888888874 77777666667888888888775 45555532 1226788888888775 333
Q ss_pred ccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEe
Q 040040 454 IFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIF 533 (869)
Q Consensus 454 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~ 533 (869)
. +...+..+++|++|++++|.....++. ... +.+++|++|+++++. ++.+.. .+..+..+++|++|+++
T Consensus 316 ~-~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~--~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 316 L-CQISASNFPSLTHLSIKGNTKRLELGT------GCL--ENLENLRELDLSHDD-IETSDC-CNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp G-GGGCGGGCTTCSEEECCSCSSCCBCCS------STT--TTCTTCCEEECCSSC-CCEEEE-STTTTTTCTTCCEEECC
T ss_pred C-chhhhhccCcCCEEECCCCCcccccch------hhh--hccCcCCEEECCCCc-cccccC-cchhcccCCCCCEEECC
Confidence 3 334566788888888888654434332 111 467788888888753 333310 14567788888888888
Q ss_pred cCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCcccccccee
Q 040040 534 ECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVM 612 (869)
Q Consensus 534 ~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~ 612 (869)
+| .+..+.|..+ ..+++|++|+++++......+.. ....+++|+.|++++ .+...+....
T Consensus 385 ~n-~l~~~~~~~~---------------~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-- 445 (606)
T 3t6q_A 385 YN-EPLSLKTEAF---------------KECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLLDISSEQLF-- 445 (606)
T ss_dssp SC-SCEEECTTTT---------------TTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCCCBTTCTTTT--
T ss_pred CC-cCCcCCHHHh---------------cCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCCCccCCcCHHHH--
Confidence 74 4555434322 12577888888876533222222 111347788888877 6554332210
Q ss_pred eEeeecceeccccceeeeecccceee--e----ccccccceEEEeecCCCccchHHHHHhccccceEEEEEEeccccccc
Q 040040 613 LLCLIGQQVFPNLEELTLSKYIFTTW--R----QAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQ 686 (869)
Q Consensus 613 ~~~~~~~~~~~~L~~L~l~~~~~~~~--~----~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 686 (869)
..+++|++|++++|.+.+. . -..+++|+.|++++|....++...+..+++|
T Consensus 446 -------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------- 502 (606)
T 3t6q_A 446 -------DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM---------------- 502 (606)
T ss_dssp -------TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC----------------
T ss_pred -------hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC----------------
Confidence 0257788888888876551 1 1226777777774444433332334444544
Q ss_pred ccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhccccee--EecccchhccccC
Q 040040 687 IKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEI--VFSKLKWLFLESS 748 (869)
Q Consensus 687 L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~--~~~~L~~L~l~~l 748 (869)
++|+++++. ++ ...+..+..+++| .|++++|. +..++... .+++|+.|++.++
T Consensus 503 -~~L~Ls~N~-l~----~~~~~~l~~l~~L-~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 503 -NHVDLSHNR-LT----SSSIEALSHLKGI-YLNLASNH--ISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp -CEEECCSSC-CC----GGGGGGGTTCCSC-EEECCSSC--CCCCCGGGHHHHHTSSEEECTTC
T ss_pred -CEEECCCCc-cC----cCChhHhCccccc-EEECcCCc--ccccCHhhcccCCCCCEEeCCCC
Confidence 444555441 22 1223334555666 66666664 44444331 3444555555443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=6.3e-28 Score=282.66 Aligned_cols=503 Identities=13% Similarity=0.074 Sum_probs=291.8
Q ss_pred hccCceeeeccccCcccccc-ccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccc
Q 040040 117 LKGLEELWLDEVQGVENVVY-ELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLR 195 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 195 (869)
.++++.|++++. .+..+.. .+ .++++|++|+++++ .+..++... +..+++|++|+++++ .++.+....
T Consensus 31 ~~~l~~L~Ls~n-~l~~~~~~~~--~~l~~L~~L~Ls~n-~l~~i~~~~----~~~l~~L~~L~Ls~n-~l~~~~p~~-- 99 (606)
T 3vq2_A 31 PSSTKNIDLSFN-PLKILKSYSF--SNFSELQWLDLSRC-EIETIEDKA----WHGLHHLSNLILTGN-PIQSFSPGS-- 99 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECTTC-CCCEECTTT----TTTCTTCCEEECTTC-CCCCCCTTS--
T ss_pred CCCcCEEECCCC-CcCEeChhhc--cCCccCcEEeCCCC-cccccCHHH----hhchhhcCEeECCCC-cccccChhh--
Confidence 367888998874 4444444 33 67899999999988 666664432 367899999999988 566663332
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCce-eeeccccccccCCccccccccCCcccEEeccCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMK-VIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLP 274 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 274 (869)
.+.+++|++|++++|. ++.+++ ..++++++|++|+++++.... .+| ..+.++++|++|+++++.
T Consensus 100 ~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp-------------~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 100 FSGLTSLENLVAVETK-LASLES-FPIGQLITLKKLNVAHNFIHSCKLP-------------AYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp STTCTTCCEEECTTSC-CCCSSS-SCCTTCTTCCEEECCSSCCCCCCCC-------------GGGGTCTTCCEEECCSSC
T ss_pred cCCcccCCEEEccCCc-cccccc-cccCCCCCCCEEeCCCCcccceech-------------HhHhhcCCCCEEEccCCc
Confidence 5689999999999984 777765 358899999999999876322 344 456678999999998864
Q ss_pred Ccccccc--cccCCC----cCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEe
Q 040040 275 QLRSFCS--VVAFPN----LETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIR 348 (869)
Q Consensus 275 ~l~~~~~--~~~l~~----L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~ 348 (869)
+..++. +..+++ +++|++++|.+..+....+. ..+|+.|+++++...... .+..++.+++|+.+++.
T Consensus 165 -l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~-----~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 165 -IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ-----GIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp -CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTT-----TCEEEEEEEESCCSCHHH-HHHHHHTTTTCEEEEEE
T ss_pred -ceecChhhhhhhhccccccceeeccCCCcceeCccccc-----CceeeeeeccCCccchhH-HHHHhcccccccccccc
Confidence 333321 222333 45899999987765444333 348999999987543333 33557888888888775
Q ss_pred cc--ccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEe
Q 040040 349 KC--MDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVV 426 (869)
Q Consensus 349 ~c--~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~ 426 (869)
.. .....+...... .......+ +++.+.+.....+...... ...+++|+.|++.++. ++.++.
T Consensus 238 ~~~~~~~~~l~~~~~~--~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~~---------- 302 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPS--IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLED---------- 302 (606)
T ss_dssp EECCTTSCCCSCCCGG--GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCCC----------
T ss_pred ccccccCCcccccChH--Hhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCcc-chhhhh----------
Confidence 32 111111000000 00001111 3444444333333332222 3446667777776643 233320
Q ss_pred eeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeeccc
Q 040040 427 GIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFC 506 (869)
Q Consensus 427 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (869)
...+++|++|++++|.. . .+|. + .+++|++|++++|..+..+.. ..+++|++|++++
T Consensus 303 -------l~~~~~L~~L~l~~n~l-~-~lp~--~-~l~~L~~L~l~~n~~~~~~~~-----------~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 303 -------VPKHFKWQSLSIIRCQL-K-QFPT--L-DLPFLKSLTLTMNKGSISFKK-----------VALPSLSYLDLSR 359 (606)
T ss_dssp -------CCTTCCCSEEEEESCCC-S-SCCC--C-CCSSCCEEEEESCSSCEECCC-----------CCCTTCCEEECCS
T ss_pred -------ccccccCCEEEcccccC-c-cccc--C-CCCccceeeccCCcCccchhh-----------ccCCCCCEEECcC
Confidence 12256677777776654 3 2452 2 567777777776644443311 3566777777766
Q ss_pred ccccccccccCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCC
Q 040040 507 LPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMH 586 (869)
Q Consensus 507 ~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 586 (869)
+. ++.+.. .|..+..+++|++|++++|. +..+ |..+ ..+++|+.|+++++......+.. .
T Consensus 360 n~-l~~~~~-~~~~~~~~~~L~~L~L~~n~-l~~~-~~~~---------------~~l~~L~~L~l~~n~l~~~~~~~-~ 419 (606)
T 3vq2_A 360 NA-LSFSGC-CSYSDLGTNSLRHLDLSFNG-AIIM-SANF---------------MGLEELQHLDFQHSTLKRVTEFS-A 419 (606)
T ss_dssp SC-EEEEEE-CCHHHHCCSCCCEEECCSCS-EEEE-CCCC---------------TTCTTCCEEECTTSEEESTTTTT-T
T ss_pred Cc-cCCCcc-hhhhhccCCcccEeECCCCc-cccc-hhhc---------------cCCCCCCeeECCCCccCCccChh-h
Confidence 42 322200 03445666777777776643 4444 3222 12566777777665432221111 1
Q ss_pred CCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeeccccee-eecc---ccccceEEEeecCCCccchH
Q 040040 587 TLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTT-WRQA---QFHKLKILHFISDGSDFFQV 661 (869)
Q Consensus 587 ~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~L~~L~l~~~~~~~~p~ 661 (869)
...+++|++|++++ .+........ ..+++|++|++++|.+.+ +.+. .+++|+.|++++|....++.
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIF---------LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTT---------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred hhccccCCEEECcCCCCCccchhhh---------cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 11246777777766 5443221110 024677777777776665 2332 25677777774444433333
Q ss_pred HHHHhccccceEEEE---E----EecccccccccEEEcCccccccccccCCCCCcccccC-CccEEEEeccc
Q 040040 662 GLLQNIHNLEKLVLK---V----EEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQ-NLEFLEVKECA 725 (869)
Q Consensus 662 ~~l~~l~~L~~L~l~---~----~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~-~L~~L~l~~c~ 725 (869)
..+..+++|++|+++ + ......+++|+.|+++++. ++ .+ +..+..++ +|++|++++|+
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~-~~----p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IE-TS----KGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CC-CE----ESCGGGSCTTCCEEECCSCC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Cc-cc----CHhHhhhcccCcEEEccCCC
Confidence 346667777777776 1 1223447888899999863 55 44 23366776 69999999997
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=287.99 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.+.... +..+++|++|+++++.....++... .+.+++|++|++++|. +..+++ ..+
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~----~~~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~Ls~N~-l~~~~p-~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDLGSSK-IYFLHP-DAF 93 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSS----CSSCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEECTTCC-CCEECT-TSS
T ss_pred CCCcCEEECCCC-cCCccChhH----CcccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEECCCCc-CcccCH-hHc
Confidence 467888888877 555553322 3577778888887774444443322 3467778888887774 655544 467
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccc--cccccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF--CSVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~L~~~~l~~ 300 (869)
+++++|++|++++|.....++.. ..+..+++|++|+++++.-.... +.+..+++|++|++++|.+..
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKD-----------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTT-----------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCCcccCEeeCcCCCCCcccccC-----------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 77778888887776533223310 11345667777777665422111 124556667777776665443
Q ss_pred cccCCCCCccccc--CCceEEEEecCC
Q 040040 301 IWHNQLPAMSSCI--QNLTRLIVHGCN 325 (869)
Q Consensus 301 i~~~~~~~~~~~l--~~L~~L~l~~c~ 325 (869)
+... .+..+ ++|+.|+++++.
T Consensus 163 ~~~~----~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 163 VCEH----ELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp CCSG----GGHHHHHCSSCCCEECCSB
T ss_pred eCHH----HcccccCCccceEECCCCc
Confidence 2211 12223 566666666643
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=277.66 Aligned_cols=497 Identities=16% Similarity=0.127 Sum_probs=281.6
Q ss_pred EEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCC
Q 040040 148 LLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQ 227 (869)
Q Consensus 148 ~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~ 227 (869)
..+.+++ +++.+|. ..+++++|+++++ .++.+.... ...+++|++|++++|.....+++ ..++++++
T Consensus 8 ~~dcs~~-~L~~vP~--------lp~~l~~LdLs~N-~i~~i~~~~--~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~ 74 (844)
T 3j0a_A 8 IAFYRFC-NLTQVPQ--------VLNTTERLLLSFN-YIRTVTASS--FPFLEQLQLLELGSQYTPLTIDK-EAFRNLPN 74 (844)
T ss_dssp EEEESCC-CSSCCCS--------SCTTCCEEEEESC-CCCEECSSS--CSSCCSCSEEEECTTCCCCEECT-TTTSSCTT
T ss_pred EEEccCC-CCCCCCC--------CCCCcCEEECCCC-cCCccChhH--CcccccCeEEeCCCCCCccccCH-HHhcCCCC
Confidence 3444454 6666663 3578999999998 677665443 45899999999999976666644 57899999
Q ss_pred CcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc---cccCCCcCEEEeccccccccccC
Q 040040 228 LQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS---VVAFPNLETLKLSAINSETIWHN 304 (869)
Q Consensus 228 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~L~~~~l~~i~~~ 304 (869)
|++|+++++. +..+.. ..+..+++|++|+++++.--..++. +..+++|++|++++|.+..+.
T Consensus 75 L~~L~Ls~N~-l~~~~p------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-- 139 (844)
T 3j0a_A 75 LRILDLGSSK-IYFLHP------------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-- 139 (844)
T ss_dssp CCEEECTTCC-CCEECT------------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--
T ss_pred CCEEECCCCc-CcccCH------------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc--
Confidence 9999999876 444421 3456789999999998753332332 567889999999999755432
Q ss_pred CCCCcccccCCceEEEEecCCCCccccChhhHhcc--CCccEEEEeccccccccccccccccccccccccC------ccc
Q 040040 305 QLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSF--VQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFP------QLN 376 (869)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L--~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~------~L~ 376 (869)
.+..++.+++|++|+++++ .++.+.+ ..+..+ ++|+.|+++++. +...... ....++ +|+
T Consensus 140 -~~~~~~~L~~L~~L~Ls~N-~i~~~~~-~~l~~l~~~~L~~L~L~~n~-l~~~~~~--------~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 140 -LHPSFGKLNSLKSIDFSSN-QIFLVCE-HELEPLQGKTLSFFSLAANS-LYSRVSV--------DWGKCMNPFRNMVLE 207 (844)
T ss_dssp -CCGGGGTCSSCCEEEEESS-CCCCCCS-GGGHHHHHCSSCCCEECCSB-SCCCCCC--------CCCSSSCTTTTCCBS
T ss_pred -cchhHhhCCCCCEEECCCC-cCCeeCH-HHcccccCCccceEECCCCc-ccccccc--------chhhcCCccccCcee
Confidence 2234567899999999885 4454433 335555 889999998864 3321111 111222 488
Q ss_pred eeecccCccccccCCCcc--cCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccc
Q 040040 377 FLKMKDLAKLTRFCSGNC--IELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTI 454 (869)
Q Consensus 377 ~L~l~~~~~L~~l~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 454 (869)
.|+++++.--...+.... ...+.++.+.+..+..-..+....+. .. ....+.....++|+.|++++|. +...
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~-~~----~~~~f~~l~~~~L~~L~Ls~n~-l~~~ 281 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DP----DQNTFAGLARSSVRHLDLSHGF-VFSL 281 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST-TG----GGTTTTTTTTSCCCEEECTTCC-CCEE
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC-CC----ChhhhhccccCCccEEECCCCc-cccc
Confidence 888888742112221111 12245666666532111111100000 00 0111111223677778777765 3332
Q ss_pred cchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEec
Q 040040 455 FPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFE 534 (869)
Q Consensus 455 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~ 534 (869)
+...+..+++|++|+++++ .+..+.. ... ..+++|++|+++++ .++.+ .|..+..+++|++|++++
T Consensus 282 -~~~~~~~l~~L~~L~L~~n-~i~~~~~------~~~--~~l~~L~~L~Ls~N-~l~~~---~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 282 -NSRVFETLKDLKVLNLAYN-KINKIAD------EAF--YGLDNLQVLNLSYN-LLGEL---YSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp -CSCCSSSCCCCCEEEEESC-CCCEECT------TTT--TTCSSCCEEEEESC-CCSCC---CSCSCSSCTTCCEEECCS
T ss_pred -ChhhhhcCCCCCEEECCCC-cCCCCCh------HHh--cCCCCCCEEECCCC-CCCcc---CHHHhcCCCCCCEEECCC
Confidence 3344566777888888773 3443322 111 35677777777775 34433 355677777777777776
Q ss_pred CCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceee
Q 040040 535 CQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVML 613 (869)
Q Consensus 535 c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~ 613 (869)
+ .+..+.|..+ ..+++|++|+++++. ++.++. +++|+.|++++ ++..++..
T Consensus 348 N-~i~~~~~~~~---------------~~l~~L~~L~Ls~N~-l~~i~~------~~~L~~L~l~~N~l~~l~~~----- 399 (844)
T 3j0a_A 348 N-HIAIIQDQTF---------------KFLEKLQTLDLRDNA-LTTIHF------IPSIPDIFLSGNKLVTLPKI----- 399 (844)
T ss_dssp C-CCCCCCSSCS---------------CSCCCCCEEEEETCC-SCCCSS------CCSCSEEEEESCCCCCCCCC-----
T ss_pred C-CCCccChhhh---------------cCCCCCCEEECCCCC-CCcccC------CCCcchhccCCCCccccccc-----
Confidence 4 5555522211 125677777777654 222221 36677777777 66655542
Q ss_pred Eeeecceeccccceeeeecccceeeec----cccccceEEEeecCCCcc-chHHHHHhccccceEEEE---EE-------
Q 040040 614 LCLIGQQVFPNLEELTLSKYIFTTWRQ----AQFHKLKILHFISDGSDF-FQVGLLQNIHNLEKLVLK---VE------- 678 (869)
Q Consensus 614 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~-~p~~~l~~l~~L~~L~l~---~~------- 678 (869)
..+++.|++++|.+..+.. ..+++|+.|++++|.... .+...+..+++|+.|+++ +.
T Consensus 400 --------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 400 --------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp --------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred --------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 3567777777776665432 135667777774433332 222223345666666665 11
Q ss_pred --ecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhcccc
Q 040040 679 --EHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLES 747 (869)
Q Consensus 679 --~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~ 747 (869)
....++++|+.|+++++ .++ ...+.....+++|+.|++++|. +..++.....++|+.|++.+
T Consensus 472 ~~~~~~~l~~L~~L~Ls~N-~l~----~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~~~L~~L~Ls~ 535 (844)
T 3j0a_A 472 CWDVFEGLSHLQVLYLNHN-YLN----SLPPGVFSHLTALRGLSLNSNR--LTVLSHNDLPANLEILDISR 535 (844)
T ss_dssp CSSCSSCBCCEECCCCCHH-HHT----TCCTTSSSSCCSCSEEEEESCC--CSSCCCCCCCSCCCEEEEEE
T ss_pred chhhhcCcccccEEECCCC-ccc----ccChhHccchhhhheeECCCCC--CCccChhhhhccccEEECCC
Confidence 01123455555555554 222 1222334455666666666664 55555444344555555444
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.9e-26 Score=263.30 Aligned_cols=469 Identities=14% Similarity=0.104 Sum_probs=275.4
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.++... +..+++|++|+++++ .++.++... .+.+++|++|++++| .++.+++ ..+
T Consensus 25 ~~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~L~Ls~n-~i~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 94 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITYIGHGD----LRACANLQVLILKSS-RINTIEGDA--FYSLGSLEHLDLSDN-HLSSLSS-SWF 94 (549)
T ss_dssp CTTCCEEECCSS-CCCEECSST----TSSCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCSCCH-HHH
T ss_pred CCCccEEECcCC-ccCccChhh----hhcCCcccEEECCCC-CcCccChhh--ccccccCCEEECCCC-ccCccCH-HHh
Confidence 368888888887 566554321 367888888888887 566655433 347888888888888 4776654 457
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~~ 300 (869)
+++++|++|+++++. +..++.. ..+..+++|++|+++++..+..++ .+..+++|++|++++|.+..
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVT-----------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCCCCcEEECCCCc-ccccchh-----------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 888888888888765 3322100 234567888888888876555554 35667888888888887554
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
. .|..++.+++|++|+++++. ...+ +...+..+++|++|+++++ .+..+...... ....+++|+.|++
T Consensus 163 ~----~~~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~~~~~~~L~~L~l 230 (549)
T 2z81_A 163 Y----QSQSLKSIRDIHHLTLHLSE-SAFL-LEIFADILSSVRYLELRDT-NLARFQFSPLP-----VDEVSSPMKKLAF 230 (549)
T ss_dssp E----CTTTTTTCSEEEEEEEECSB-STTH-HHHHHHSTTTBSEEEEESC-BCTTCCCCCCS-----SCCCCCCCCEEEE
T ss_pred c----ChhhhhccccCceEecccCc-cccc-chhhHhhcccccEEEccCC-ccccccccccc-----hhhhhhcccceec
Confidence 3 33344557888888888754 3333 4444566888888888885 44433111000 1224677888887
Q ss_pred ccCccccccCC----CcccCCCCccEEEEccCCccc--cccccccCCCceEeeeeccCcccccccccEEEEeccCCcccc
Q 040040 381 KDLAKLTRFCS----GNCIELPSLKQLRMAKCPELK--AFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTI 454 (869)
Q Consensus 381 ~~~~~L~~l~~----~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 454 (869)
.++. +..... .....+++|+.+.+.+|.--. .++... .-....+++|+.|.+.++..-...
T Consensus 231 ~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~------------~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 231 RGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE------------SDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp ESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT------------TTCCCCCTTCCEEEEESCBCSCGG
T ss_pred cccc-cchhHHHHHHHHhhhhccccccccccccccccccccccc------------hhhhhhhcccccccccccccchhh
Confidence 7764 221100 011235677777777764211 111000 000122566777777665321100
Q ss_pred ---cchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEE
Q 040040 455 ---FPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVR 531 (869)
Q Consensus 455 ---~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~ 531 (869)
-........++|++|+++++ .+..++.... +.+++|++|+++++.--..+.. .+..+..+++|++|+
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~~--------~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFS--------QHLKSLEFLDLSENLMVEEYLK-NSACKGAWPSLQTLV 367 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHHH--------HHCTTCCEEECCSSCCCHHHHH-HHTCTTSSTTCCEEE
T ss_pred hcccchhhhhhcccceEEEeccC-ccccCCHHHH--------hcCccccEEEccCCcccccccc-chhhhhccccCcEEE
Confidence 00112334566777777763 3555442100 1466777777777543222100 012355677777777
Q ss_pred EecCCCcccccCc---cEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCcccc
Q 040040 532 IFECQRLKSIFPT---SVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGS 607 (869)
Q Consensus 532 l~~c~~L~~l~p~---s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~ 607 (869)
+++| .++.+ |. .+ ..+++|++|++++| .++.++..... +++|++|++++ ++..++.
T Consensus 368 Ls~N-~l~~~-~~~~~~~---------------~~l~~L~~L~Ls~N-~l~~lp~~~~~--~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 368 LSQN-HLRSM-QKTGEIL---------------LTLKNLTSLDISRN-TFHPMPDSCQW--PEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp CTTS-CCCCH-HHHHHHG---------------GGCTTCCEEECTTC-CCCCCCSCCCC--CTTCCEEECTTSCCSCCCT
T ss_pred ccCC-ccccc-ccchhhh---------------hcCCCCCEEECCCC-CCccCChhhcc--cccccEEECCCCCcccccc
Confidence 7764 45443 21 01 12567777777776 34455544333 37777787777 7766654
Q ss_pred ccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccc
Q 040040 608 KSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQI 687 (869)
Q Consensus 608 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L 687 (869)
.. +++|++|++++|.+.++. ..+++|++|++++|....+|.. .. +++|
T Consensus 428 ~~------------~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~~ip~~--~~-----------------l~~L 475 (549)
T 2z81_A 428 CI------------PQTLEVLDVSNNNLDSFS-LFLPRLQELYISRNKLKTLPDA--SL-----------------FPVL 475 (549)
T ss_dssp TS------------CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSSCCCG--GG-----------------CTTC
T ss_pred hh------------cCCceEEECCCCChhhhc-ccCChhcEEECCCCccCcCCCc--cc-----------------CccC
Confidence 32 468888888888877654 4577888888866665566632 22 4456
Q ss_pred cEEEcCccccccccccCCCCCcccccCCccEEEEeccc
Q 040040 688 KSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECA 725 (869)
Q Consensus 688 ~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~ 725 (869)
+.|+++++ .++ ...+..+..+++|+.|++++|+
T Consensus 476 ~~L~Ls~N-~l~----~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 476 LVMKISRN-QLK----SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CEEECCSS-CCC----CCCTTGGGGCTTCCEEECCSSC
T ss_pred CEEecCCC-ccC----CcCHHHHhcCcccCEEEecCCC
Confidence 66666764 333 2233446778888888888887
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=6.1e-26 Score=262.46 Aligned_cols=465 Identities=18% Similarity=0.199 Sum_probs=316.2
Q ss_pred ccCceeeeccccCcccccc-ccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVY-ELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRA 196 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~ 196 (869)
++++.|+++++. +..+.+ .+ ..+++|++|+++++ .+..++... +..+++|++|+++++ .+++++... .
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~~~--~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDL--RACANLQVLILKSS-RINTIEGDA----FYSLGSLEHLDLSDN-HLSSLSSSW--F 94 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTT--SSCTTCCEEECTTS-CCCEECTTT----TTTCTTCCEEECTTS-CCCSCCHHH--H
T ss_pred CCccEEECcCCc-cCccChhhh--hcCCcccEEECCCC-CcCccChhh----ccccccCCEEECCCC-ccCccCHHH--h
Confidence 678999999854 555443 34 77999999999998 676665432 368899999999998 676655432 4
Q ss_pred cccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCc
Q 040040 197 ESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQL 276 (869)
Q Consensus 197 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 276 (869)
+.+++|++|++++|. ++.++....++++++|++|+++++..+..++. ..+..+++|++|+++++.--
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~------------~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR------------IDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------------TTTTTCCEEEEEEEEETTCC
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCH------------hhhhcccccCeeeccCCccc
Confidence 589999999999995 66543324789999999999999886777662 24566899999999986533
Q ss_pred cccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcccc--ChhhHhccCCccEEEEeccccc
Q 040040 277 RSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLF--STSLVRSFVQLQHLEIRKCMDL 353 (869)
Q Consensus 277 ~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~~~L~~L~~L~l~~c~~l 353 (869)
...+ .+..+++|++|+++++.+..+... ....+++|++|+++++. ++... +......+++|+.|+++++ .+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l 235 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEI----FADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VL 235 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHH----HHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EE
T ss_pred ccChhhhhccccCceEecccCcccccchh----hHhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-cc
Confidence 3233 356688999999999874432211 12347899999999864 33321 2222356789999999986 33
Q ss_pred cccccccccccccccccccCccceeecccCccccccCC------CcccCCCCccEEEEccCCccccccccccCCCceEee
Q 040040 354 EGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCS------GNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVG 427 (869)
Q Consensus 354 ~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 427 (869)
....... .......+++|+.+++.+|. +..+.. .....+++|+.|.+.++. +..+...
T Consensus 236 ~~~~~~~----l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~---------- 299 (549)
T 2z81_A 236 TDESFNE----LLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLF---------- 299 (549)
T ss_dssp EHHHHHH----HHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGS----------
T ss_pred chhHHHH----HHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccc-cchhhhc----------
Confidence 3211100 00123467899999999886 333211 122357788999887753 1111100
Q ss_pred eeccCc--ccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecc
Q 040040 428 IQSFFN--EKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVF 505 (869)
Q Consensus 428 ~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (869)
..++ .....+|++|++++|. +. .+|...++.+++|++|++++|.....++... ... +.+++|++|+++
T Consensus 300 --~~l~~~~~~~~~L~~L~l~~n~-l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~--~~l~~L~~L~Ls 369 (549)
T 2z81_A 300 --YDLSTVYSLLEKVKRITVENSK-VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS----ACK--GAWPSLQTLVLS 369 (549)
T ss_dssp --CCCCHHHHHSTTCCEEEEESSC-CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH----TCT--TSSTTCCEEECT
T ss_pred --ccchhhhhhcccceEEEeccCc-cc-cCCHHHHhcCccccEEEccCCccccccccch----hhh--hccccCcEEEcc
Confidence 0000 0124789999999876 44 3688777889999999999965444332210 001 478899999999
Q ss_pred cccccccccccCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCC
Q 040040 506 CLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGM 585 (869)
Q Consensus 506 ~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 585 (869)
++ .++.+... +..+..+++|++|++++| +++.+ |..+ ..+++|++|+++++. +..++...
T Consensus 370 ~N-~l~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~---------------~~~~~L~~L~Ls~N~-l~~l~~~~ 429 (549)
T 2z81_A 370 QN-HLRSMQKT-GEILLTLKNLTSLDISRN-TFHPM-PDSC---------------QWPEKMRFLNLSSTG-IRVVKTCI 429 (549)
T ss_dssp TS-CCCCHHHH-HHHGGGCTTCCEEECTTC-CCCCC-CSCC---------------CCCTTCCEEECTTSC-CSCCCTTS
T ss_pred CC-cccccccc-hhhhhcCCCCCEEECCCC-CCccC-Chhh---------------cccccccEEECCCCC-cccccchh
Confidence 96 55554100 124788999999999985 77776 7543 246899999999986 44444322
Q ss_pred CCCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeecc-ccccceEEEeecCCCccchHHH
Q 040040 586 HTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQA-QFHKLKILHFISDGSDFFQVGL 663 (869)
Q Consensus 586 ~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~p~~~ 663 (869)
.++|+.|++++ ++..++. .+++|++|++++|++..++.. .+++|+.|++++|....+|...
T Consensus 430 ----~~~L~~L~Ls~N~l~~~~~-------------~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 430 ----PQTLEVLDVSNNNLDSFSL-------------FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp ----CTTCSEEECCSSCCSCCCC-------------CCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTG
T ss_pred ----cCCceEEECCCCChhhhcc-------------cCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHH
Confidence 26899999999 8877653 368999999999999877653 3899999999555555555444
Q ss_pred HHhccccceEEE
Q 040040 664 LQNIHNLEKLVL 675 (869)
Q Consensus 664 l~~l~~L~~L~l 675 (869)
+..+++|+.|++
T Consensus 493 ~~~l~~L~~L~l 504 (549)
T 2z81_A 493 FDRLTSLQKIWL 504 (549)
T ss_dssp GGGCTTCCEEEC
T ss_pred HhcCcccCEEEe
Confidence 566665555543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=262.08 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
+++++|+++++ .++.++... +..+++|++|+++++ +++.++... .+.+++|++|+++++. ++.+++ ..++
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~----~~~l~~L~~L~Ls~n-~i~~i~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~~ 97 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYS----FFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGNP-IQSLAL-GAFS 97 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTT----TTTCSSCCEEECTTC-CCCEECTTT--TTTCTTCCEEECTTCC-CCEECT-TTTT
T ss_pred ccccEEEccCC-ccCccChhH----hhCCCCceEEECCCC-cCCccCccc--ccCchhCCEEeCcCCc-CCccCH-hhhc
Confidence 46777777776 555554322 356777777777776 455554332 3367777777777774 665544 3566
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc--cc-ccccCCCcCEEEecccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FC-SVVAFPNLETLKLSAINSE 299 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~-~~~~l~~L~~L~L~~~~l~ 299 (869)
++++|++|+++++. +..++. ..+..+++|++|+++++. +.. +| .+..+++|++|++++|.+.
T Consensus 98 ~l~~L~~L~L~~n~-l~~l~~------------~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 98 GLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCTTCCEEECTTSC-CCCSTT------------CSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred Cccccccccccccc-cccCCC------------ccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccc
Confidence 77777777777653 343331 123445666666665543 221 12 2344555555555555543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=251.40 Aligned_cols=454 Identities=14% Similarity=0.121 Sum_probs=287.1
Q ss_pred hccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccc
Q 040040 117 LKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRA 196 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~ 196 (869)
.++++.|++++. .+..+..... .++++|++|++++| .++.++... +..+++|++|+++++ .++.++... .
T Consensus 27 ~~~l~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~ 96 (570)
T 2z63_A 27 PFSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGA----YQSLSHLSTLILTGN-PIQSLALGA--F 96 (570)
T ss_dssp CSSCCEEECCSC-CCCEECTTTT-TTCSSCCEEECTTC-CCCEECTTT----TTTCTTCCEEECTTC-CCCEECTTT--T
T ss_pred cccccEEEccCC-ccCccChhHh-hCCCCceEEECCCC-cCCccCccc----ccCchhCCEEeCcCC-cCCccCHhh--h
Confidence 356888888874 3444433221 67899999999988 677665432 367889999999988 566665433 4
Q ss_pred cccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCce-eeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 197 ESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMK-VIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 197 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
+.+++|++|+++++ +++.+++. .++++++|++|+++++.... .+| ..+.++++|++|+++++.
T Consensus 97 ~~l~~L~~L~L~~n-~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp-------------~~~~~l~~L~~L~l~~n~- 160 (570)
T 2z63_A 97 SGLSSLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNLIQSFKLP-------------EYFSNLTNLEHLDLSSNK- 160 (570)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCC-------------GGGGGCTTCCEEECTTSC-
T ss_pred cCcccccccccccc-ccccCCCc-cccccccccEEecCCCccceecCh-------------hhhcccCCCCEEeCcCCc-
Confidence 57899999999988 47777552 47889999999999875322 234 346678899999998864
Q ss_pred ccccc--ccccCCCc----CEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEE---
Q 040040 276 LRSFC--SVVAFPNL----ETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLE--- 346 (869)
Q Consensus 276 l~~~~--~~~~l~~L----~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~--- 346 (869)
+..++ .+..+++| ++|++++|.+..+....+. ..+|++|+++++..-.... ...++.+++++.+.
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~-~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLHKLTLRNNFDSLNVM-KTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-----TCEEEEEEEESCCSCTTHH-HHHHHTTTTCEEEEEEE
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhc-----cCcceeEecccccccccch-hhhhcCccccceeeecc
Confidence 33332 23445566 7888988886665443333 2368888887753211111 12233444444333
Q ss_pred -----------------------------EeccccccccccccccccccccccccCccceeecccCccccccCCCcccCC
Q 040040 347 -----------------------------IRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIEL 397 (869)
Q Consensus 347 -----------------------------l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l 397 (869)
+.++..+..... .....+++|+.|+++++. ++.++.... .+
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--------~~~~~l~~L~~L~l~~~~-l~~l~~~~~-~~ 304 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII--------DLFNCLTNVSSFSLVSVT-IERVKDFSY-NF 304 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST--------TTTGGGTTCSEEEEESCE-ECSCCBCCS-CC
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch--------hhhcCcCcccEEEecCcc-chhhhhhhc-cC
Confidence 333222211111 124567888999988875 666665432 34
Q ss_pred CCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCc
Q 040040 398 PSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSL 477 (869)
Q Consensus 398 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 477 (869)
+|+.|++.+|. +..+|. ..+++|++|++.+|.... .++. ..+++|++|++++|. +
T Consensus 305 -~L~~L~l~~n~-~~~l~~------------------~~l~~L~~L~l~~n~~~~-~~~~---~~~~~L~~L~l~~n~-l 359 (570)
T 2z63_A 305 -GWQHLELVNCK-FGQFPT------------------LKLKSLKRLTFTSNKGGN-AFSE---VDLPSLEFLDLSRNG-L 359 (570)
T ss_dssp -CCSEEEEESCB-CSSCCB------------------CBCSSCCEEEEESCBSCC-BCCC---CBCTTCCEEECCSSC-C
T ss_pred -CccEEeeccCc-ccccCc------------------ccccccCEEeCcCCcccc-cccc---ccCCCCCEEeCcCCc-c
Confidence 88888888764 334432 236788888888876433 2332 467888888888853 3
Q ss_pred cccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccCc-cEEEEEeccCCC
Q 040040 478 EEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPT-SVEIVANDVRGN 556 (869)
Q Consensus 478 ~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~-s~ei~~~~~~~~ 556 (869)
..+... .... ..+++|++|+++++. +..+ +..+..+++|++|++++| .+....|. .+
T Consensus 360 ~~~~~~----~~~~--~~~~~L~~L~l~~n~-l~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------- 417 (570)
T 2z63_A 360 SFKGCC----SQSD--FGTTSLKYLDLSFNG-VITM----SSNFLGLEQLEHLDFQHS-NLKQMSEFSVF---------- 417 (570)
T ss_dssp BEEEEE----EHHH--HTCSCCCEEECCSCS-EEEE----EEEEETCTTCCEEECTTS-EEESCTTSCTT----------
T ss_pred Cccccc----cccc--cccCccCEEECCCCc-cccc----cccccccCCCCEEEccCC-ccccccchhhh----------
Confidence 332100 0011 367788888888863 4444 344778888888888874 44443221 11
Q ss_pred CCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccC--ccccccceeeEeeecceeccccceeeeecc
Q 040040 557 DAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNP--SFGSKSLVMLLCLIGQQVFPNLEELTLSKY 633 (869)
Q Consensus 557 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 633 (869)
..+++|++|++++|......+..... +++|++|++++ .+. .++.... .+++|++|++++|
T Consensus 418 -----~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~p~~~~----------~l~~L~~L~l~~n 480 (570)
T 2z63_A 418 -----LSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNSFQENFLPDIFT----------ELRNLTFLDLSQC 480 (570)
T ss_dssp -----TTCTTCCEEECTTSCCEECCTTTTTT--CTTCCEEECTTCEEGGGEECSCCT----------TCTTCCEEECTTS
T ss_pred -----hcCCCCCEEeCcCCcccccchhhhhc--CCcCcEEECcCCcCccccchhhhh----------cccCCCEEECCCC
Confidence 13678888888887644433333333 48888888888 554 3443221 2678899999998
Q ss_pred cceeeeccc---cccceEEEeecCCCccchHHHHHhccccceEEEE
Q 040040 634 IFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK 676 (869)
Q Consensus 634 ~~~~~~~~~---~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~ 676 (869)
.+.++.+.. +++|+.|++++|....+|...+.++++|+.|+++
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 888875543 6788888886555555565667888889988875
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2e-24 Score=256.36 Aligned_cols=366 Identities=15% Similarity=0.121 Sum_probs=251.0
Q ss_pred cccccccccccccccCCCCEEEecCCCCCcc------------------cCChhhhc--CCCCCcEEEEeecCCceeeec
Q 040040 185 NLEKISCSQLRAESFLRLRNLKVESCEKLTH------------------IFSFSISR--GLPQLQTIKVTACKNMKVIFE 244 (869)
Q Consensus 185 ~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~------------------l~~~~~~~--~L~~L~~L~l~~c~~l~~l~~ 244 (869)
+++++|.. .+.+++|++|+++++. ++. +|. .++ ++++|++|++++|.....+|
T Consensus 436 ~L~~IP~~---l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP- 508 (876)
T 4ecn_A 436 RITFISKA---IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLP- 508 (876)
T ss_dssp EEEEECGG---GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCC-
T ss_pred cccchhHH---HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccCh-
Confidence 44556554 6789999999999995 776 654 566 99999999999998777777
Q ss_pred cccccccCCccccccccCCcccEEeccCCCCccc--ccc--------cccCCCcCEEEeccccccccccCCCCC--cccc
Q 040040 245 VGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FCS--------VVAFPNLETLKLSAINSETIWHNQLPA--MSSC 312 (869)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~--------~~~l~~L~~L~L~~~~l~~i~~~~~~~--~~~~ 312 (869)
..+..+++|++|+++++..+.. +|. ...+++|++|++++|.+.. +|. .++.
T Consensus 509 ------------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~ 571 (876)
T 4ecn_A 509 ------------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQK 571 (876)
T ss_dssp ------------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTT
T ss_pred ------------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhc
Confidence 5667799999999999764543 432 2345699999999998653 555 5667
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCc-cceeecccCccccccCC
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQ-LNFLKMKDLAKLTRFCS 391 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~L~~l~~ 391 (869)
+++|+.|+++++. ++.+ | .++.+++|+.|+++++ .+..++. ....+++ |+.|+++++. ++.+|.
T Consensus 572 L~~L~~L~Ls~N~-l~~l-p--~~~~L~~L~~L~Ls~N-~l~~lp~---------~l~~l~~~L~~L~Ls~N~-L~~lp~ 636 (876)
T 4ecn_A 572 MVKLGLLDCVHNK-VRHL-E--AFGTNVKLTDLKLDYN-QIEEIPE---------DFCAFTDQVEGLGFSHNK-LKYIPN 636 (876)
T ss_dssp CTTCCEEECTTSC-CCBC-C--CCCTTSEESEEECCSS-CCSCCCT---------TSCEECTTCCEEECCSSC-CCSCCS
T ss_pred CCCCCEEECCCCC-cccc-h--hhcCCCcceEEECcCC-ccccchH---------HHhhccccCCEEECcCCC-CCcCch
Confidence 9999999999864 5555 4 4788999999999986 4555543 2557788 9999999986 777764
Q ss_pred Ccc-cCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEE
Q 040040 392 GNC-IELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLI 470 (869)
Q Consensus 392 ~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 470 (869)
... ...++|+.|+++++.--..+|.- ......-..++|+.|++++|. +. .+|...+..+++|+.|+
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l-----------~~~l~~~~~~~L~~L~Ls~N~-L~-~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNI-----------SCSMDDYKGINASTVTLSYNE-IQ-KFPTELFATGSPISTII 703 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSC-----------SSCTTTCCCCCEEEEECCSSC-CC-SCCHHHHHTTCCCSEEE
T ss_pred hhhccccCCCCEEECcCCcCCCccccc-----------hhhhccccCCCcCEEEccCCc-CC-ccCHHHHccCCCCCEEE
Confidence 321 12345999999886432222210 000000123589999999886 44 36888888899999999
Q ss_pred EcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcc--cCCCccEEEEecCCCcccccCccEEE
Q 040040 471 VGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKL--IFPNLVLVRIFECQRLKSIFPTSVEI 548 (869)
Q Consensus 471 l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~--~l~~L~~L~l~~c~~L~~l~p~s~ei 548 (869)
+++| .+..++.......... ...+++|+.|++++| +++.+ |..+. .+++|+.|++++ +.+..+ |.++
T Consensus 704 Ls~N-~L~~ip~~~~~~~~~~-l~nl~~L~~L~Ls~N-~L~~l----p~~l~~~~l~~L~~L~Ls~-N~L~~l-p~~l-- 772 (876)
T 4ecn_A 704 LSNN-LMTSIPENSLKPKDGN-YKNTYLLTTIDLRFN-KLTSL----SDDFRATTLPYLSNMDVSY-NCFSSF-PTQP-- 772 (876)
T ss_dssp CCSC-CCSCCCTTSSSCTTSC-CTTGGGCCEEECCSS-CCCCC----CGGGSTTTCTTCCEEECCS-SCCSSC-CCGG--
T ss_pred CCCC-cCCccChHHhcccccc-ccccCCccEEECCCC-CCccc----hHHhhhccCCCcCEEEeCC-CCCCcc-chhh--
Confidence 9995 5666654221000000 013459999999997 67766 77776 899999999997 467775 7654
Q ss_pred EEeccCCCCCcceeeccccceEeecCCC------CCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeeccee
Q 040040 549 VANDVRGNDAATKFIFPSLTFLKLRDLP------YLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQV 621 (869)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~ 621 (869)
..+++|+.|++++++ ....++..... +++|+.|++++ .+..+|...
T Consensus 773 -------------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~L~~Ip~~l------------ 825 (876)
T 4ecn_A 773 -------------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSNDIRKVDEKL------------ 825 (876)
T ss_dssp -------------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSCCCBCCSCC------------
T ss_pred -------------hcCCCCCEEECCCCCCcccccccccChHHHhc--CCCCCEEECCCCCCCccCHhh------------
Confidence 347899999998744 23334433333 36677777766 665555532
Q ss_pred ccccceeeeecccceeeec
Q 040040 622 FPNLEELTLSKYIFTTWRQ 640 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~ 640 (869)
.++|+.|+|++|.+..+..
T Consensus 826 ~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 826 TPQLYILDIADNPNISIDV 844 (876)
T ss_dssp CSSSCEEECCSCTTCEEEC
T ss_pred cCCCCEEECCCCCCCccCh
Confidence 3566777777766655443
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.7e-24 Score=253.10 Aligned_cols=427 Identities=14% Similarity=0.103 Sum_probs=273.9
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCC--------------------------------
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTE-------------------------------- 165 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-------------------------------- 165 (869)
.+++.|++.++.-...+++.+ ..+++|++|+++++. +..-+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l--~~L~~L~~L~Ls~N~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI--GQLTELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG--GGCTTCCEEESCCGG-GGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHH--hcCccceEEECcCCc-cccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 467788888765555566556 788999999998873 100000000
Q ss_pred --------------C--CCCCCCCCccEeeccc-cccccccccccccccccCCCCEEEecCCCCCcc-------------
Q 040040 166 --------------L--VPRDAFPLLESLSLSN-LMNLEKISCSQLRAESFLRLRNLKVESCEKLTH------------- 215 (869)
Q Consensus 166 --------------~--~~~~~~~~L~~L~L~~-~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~------------- 215 (869)
. ........++.+.+.. +.+++++|.. .+.+++|++|+++++. ++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~---l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSP-FVAENICEAWENENSE 233 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG---GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH---HhcccCCCEEECcCCc-cccccccccccccccc
Confidence 0 0001112233333332 2255566554 6789999999999996 777
Q ss_pred -----cCChhhhc--CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc--ccc-ccc-
Q 040040 216 -----IFSFSISR--GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FCS-VVA- 284 (869)
Q Consensus 216 -----l~~~~~~~--~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~- 284 (869)
+|. .++ ++++|++|++++|.....+| ..+..+++|++|+++++..+.. +|. +..
T Consensus 234 ~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 234 YAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTKLP-------------TFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp HHHHHTTS--CCCGGGCTTCCEEEEECCTTCSSCC-------------TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred hhcccCch--hhhhcccCCCCEEEecCCcCCccCh-------------HHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 665 677 99999999999998777777 4567799999999999864543 443 233
Q ss_pred -----CCCcCEEEeccccccccccCCCCC--cccccCCceEEEEecCCCCc-cccChhhHhccCCccEEEEecccccccc
Q 040040 285 -----FPNLETLKLSAINSETIWHNQLPA--MSSCIQNLTRLIVHGCNNLK-FLFSTSLVRSFVQLQHLEIRKCMDLEGI 356 (869)
Q Consensus 285 -----l~~L~~L~L~~~~l~~i~~~~~~~--~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~~L~l~~c~~l~~i 356 (869)
+++|++|++++|.+.. +|. .++.+++|++|++++|. ++ .+ | .++.+++|++|+++++ .++.+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~-l~g~i-p--~~~~l~~L~~L~L~~N-~l~~l 368 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQ-LEGKL-P--AFGSEIKLASLNLAYN-QITEI 368 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCC-CEEEC-C--CCEEEEEESEEECCSS-EEEEC
T ss_pred hccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCc-Cccch-h--hhCCCCCCCEEECCCC-ccccc
Confidence 3899999999998553 555 56678999999999864 45 54 4 4788999999999986 56555
Q ss_pred ccccccccccccccccCc-cceeecccCccccccCCCcc-cCCCCccEEEEccCCccccccccccCCCceEeeee-ccCc
Q 040040 357 VFPEEMIEEERKDIVFPQ-LNFLKMKDLAKLTRFCSGNC-IELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQ-SFFN 433 (869)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~L~~l~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~-~~~~ 433 (869)
+. ....+++ |+.|+++++. ++.+|.... ..+++|+.|+++++.--...|.. + . ....
T Consensus 369 p~---------~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l---------~~~~~~ 428 (636)
T 4eco_A 369 PA---------NFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-F---------DPLDPT 428 (636)
T ss_dssp CT---------TSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-S---------CTTCSS
T ss_pred cH---------hhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhh-h---------cccccc
Confidence 43 2557788 9999999986 777775422 22458999999886433322211 0 0 0000
Q ss_pred ccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccc
Q 040040 434 EKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKI 513 (869)
Q Consensus 434 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l 513 (869)
.-..++|+.|++++|. +. .+|...+..+++|++|++++| .+..++.......... ...+++|++|+++++ .++.+
T Consensus 429 ~~~~~~L~~L~Ls~N~-l~-~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l 503 (636)
T 4eco_A 429 PFKGINVSSINLSNNQ-IS-KFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENEN-FKNTYLLTSIDLRFN-KLTKL 503 (636)
T ss_dssp CCCCCCEEEEECCSSC-CC-SCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEE-CTTGGGCCEEECCSS-CCCBC
T ss_pred cccCCCCCEEECcCCc-cC-cCCHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccc-ccccCCccEEECcCC-cCCcc
Confidence 0124689999999876 44 358777878999999999984 4556654211000000 012338999999986 56666
Q ss_pred cccCCCCcc--cCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCC------CCceecCCC
Q 040040 514 WNKDPRGKL--IFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLP------YLTTFYSGM 585 (869)
Q Consensus 514 ~~~~p~~~~--~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~ 585 (869)
|..+. .+++|++|++++ +.+..+ |.++ ..+++|+.|+++++. ....++...
T Consensus 504 ----p~~~~~~~l~~L~~L~Ls~-N~l~~i-p~~~---------------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 504 ----SDDFRATTLPYLVGIDLSY-NSFSKF-PTQP---------------LNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp ----CGGGSTTTCTTCCEEECCS-SCCSSC-CCGG---------------GGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred ----ChhhhhccCCCcCEEECCC-CCCCCc-Chhh---------------hcCCCCCEEECCCCcccccCcccccChHHH
Confidence 67776 899999999998 467665 7654 347888999886543 233333333
Q ss_pred CCCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccce
Q 040040 586 HTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFT 636 (869)
Q Consensus 586 ~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 636 (869)
.. +++|++|++++ .+..+|... .++|++|++++|.+.
T Consensus 563 ~~--l~~L~~L~Ls~N~l~~ip~~~------------~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 563 TL--CPSLTQLQIGSNDIRKVNEKI------------TPNISVLDIKDNPNI 600 (636)
T ss_dssp GG--CSSCCEEECCSSCCCBCCSCC------------CTTCCEEECCSCTTC
T ss_pred hc--CCCCCEEECCCCcCCccCHhH------------hCcCCEEECcCCCCc
Confidence 22 25555555555 554444322 245555555555443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.1e-23 Score=237.90 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=66.1
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
++|+++++ .++.+|... +++|++|+++++ .++.++... ...+++|++|++++|. ++.+++ ..+++++
T Consensus 3 ~~l~ls~n-~l~~ip~~~-------~~~L~~L~Ls~n-~i~~~~~~~--~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDL-------SQKTTILNISQN-YISELWTSD--ILSLSKLRILIISHNR-IQYLDI-SVFKFNQ 69 (520)
T ss_dssp CEEECTTS-CCSSCCCSC-------CTTCSEEECCSS-CCCCCCHHH--HTTCTTCCEEECCSSC-CCEEEG-GGGTTCT
T ss_pred ceEecCCC-Ccccccccc-------cccccEEECCCC-cccccChhh--ccccccccEEecCCCc-cCCcCh-HHhhccc
Confidence 45666666 566665432 267777777766 455444222 3356777777777663 555533 3566677
Q ss_pred CCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc--c-cccccCCCcCEEEecccc
Q 040040 227 QLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--F-CSVVAFPNLETLKLSAIN 297 (869)
Q Consensus 227 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~-~~~~~l~~L~~L~L~~~~ 297 (869)
+|++|+++++. ++.+|. . .+++|++|+++++. +.. + ..+..+++|++|++++|.
T Consensus 70 ~L~~L~Ls~N~-l~~lp~-------------~--~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 70 ELEYLDLSHNK-LVKISC-------------H--PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp TCCEEECCSSC-CCEEEC-------------C--CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred CCCEEecCCCc-eeecCc-------------c--ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc
Confidence 77777776653 445551 1 35556666665543 221 1 123445555555555554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=4.3e-24 Score=249.75 Aligned_cols=448 Identities=12% Similarity=0.100 Sum_probs=298.3
Q ss_pred CcccEEeccCCCCccccc-ccccCCCcCEEEeccccccc---ccc--------------------------CCCCCcc--
Q 040040 263 SQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSET---IWH--------------------------NQLPAMS-- 310 (869)
Q Consensus 263 ~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~---i~~--------------------------~~~~~~~-- 310 (869)
.+++.|+++++.--..+| .++.+++|++|+|++|.+.. ... ...+...
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 478899998876433443 47889999999999995310 000 0000000
Q ss_pred -----------------cccCCceEEEEec-CCCCccccChhhHhccCCccEEEEeccccccc-----------------
Q 040040 311 -----------------SCIQNLTRLIVHG-CNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG----------------- 355 (869)
Q Consensus 311 -----------------~~l~~L~~L~l~~-c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~----------------- 355 (869)
.....++.+.+.. ++.++.+ |. .++++++|++|+++++. ++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~-~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK-AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CG-GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccC-CH-HHhcccCCCEEECcCCc-cccccccccccccccchhcc
Confidence 0011122222222 3456664 53 47889999999999964 665
Q ss_pred -ccccccccccccccc--ccCccceeecccCccccccCCCcccCCCCccEEEEccCCcccc--ccccccCCCceEeeeec
Q 040040 356 -IVFPEEMIEEERKDI--VFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKA--FILQNINTDMTVVGIQS 430 (869)
Q Consensus 356 -i~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~ 430 (869)
++. .+. .+++|++|+++++.-...+|. ....+++|+.|+++++..++. +|..- ..
T Consensus 238 ~ip~---------~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~----------~~ 297 (636)
T 4eco_A 238 YKTE---------DLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW----------QA 297 (636)
T ss_dssp HTTS---------CCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHH----------HH
T ss_pred cCch---------hhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHHH----------Hh
Confidence 332 355 789999999999875555553 345689999999998875553 54320 00
Q ss_pred cCcccccccccEEEEeccCCcccccch-hHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccc
Q 040040 431 FFNEKSFCKLKLMEVIFCKSLWTIFPH-NMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPK 509 (869)
Q Consensus 431 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (869)
......+++|+.|++++|. +. .+|. ..++.+++|++|++++|..-..++.+ +.+++|++|+++++ .
T Consensus 298 L~~~~~l~~L~~L~L~~n~-l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~----------~~l~~L~~L~L~~N-~ 364 (636)
T 4eco_A 298 LADAPVGEKIQIIYIGYNN-LK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAF----------GSEIKLASLNLAYN-Q 364 (636)
T ss_dssp HHHSGGGGTCCEEECCSSC-CS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCC----------EEEEEESEEECCSS-E
T ss_pred hhccccCCCCCEEECCCCc-CC-ccCchhhhccCCCCCEEeCcCCcCccchhhh----------CCCCCCCEEECCCC-c
Confidence 0000124899999999886 44 3565 35778999999999995433266521 47899999999996 5
Q ss_pred cccccccCCCCcccCCC-ccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCC--
Q 040040 510 LTKIWNKDPRGKLIFPN-LVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMH-- 586 (869)
Q Consensus 510 L~~l~~~~p~~~~~l~~-L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-- 586 (869)
++.+ |..+..+++ |++|+++++ .+..+ |..+ + ...+++|+.|+++++......+....
T Consensus 365 l~~l----p~~l~~l~~~L~~L~Ls~N-~l~~l-p~~~--------~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 365 ITEI----PANFCGFTEQVENLSFAHN-KLKYI-PNIF--------D-----AKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp EEEC----CTTSEEECTTCCEEECCSS-CCSSC-CSCC--------C-----TTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred cccc----cHhhhhhcccCcEEEccCC-cCccc-chhh--------h-----hcccCccCEEECcCCcCCCcchhhhccc
Confidence 6666 888999999 999999985 57765 7533 0 01145899999999875544333322
Q ss_pred ---CCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccccc----------cceEEEee
Q 040040 587 ---TLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFH----------KLKILHFI 652 (869)
Q Consensus 587 ---~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~l~ 652 (869)
...+++|++|++++ ++..++..... .+++|++|++++|.+..++...+. +|+.|+++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~---------~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFS---------TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHH---------TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHc---------cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 22457999999999 88877764211 268999999999999876665543 99999997
Q ss_pred cCCCccchHHHH-HhccccceEEEE---EE---ecccccccccEEEcCcccccc-ccccCCCCCcccccCCccEEEEecc
Q 040040 653 SDGSDFFQVGLL-QNIHNLEKLVLK---VE---EHAEGIAQIKSLKLNKLWFIK-EHLWNPDSKLDSFLQNLEFLEVKEC 724 (869)
Q Consensus 653 ~~~~~~~p~~~l-~~l~~L~~L~l~---~~---~~~~~~~~L~~L~l~~~~~L~-~~l~~~~~~~~~~l~~L~~L~l~~c 724 (869)
+|....+|..+. ..+++|+.|+++ +. .....+++|+.|+++++..+. -.+....+..+..+++|++|++++|
T Consensus 497 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp SSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 676668887644 589999999998 22 233458899999997644221 0222344566788999999999999
Q ss_pred cchhhcccceeEecccchhccccCCCcceeecC-Ce------eeeCCCcceEeeccCCCcc
Q 040040 725 ALSLISLRIEIVFSKLKWLFLESSGSITSFCSG-NY------AISFPSLEVLIVENCPKLN 778 (869)
Q Consensus 725 ~~~l~~l~~~~~~~~L~~L~l~~l~~l~~~~~~-~~------~~~~~~L~~L~i~~c~~~~ 778 (869)
. +..+|.. .+++|+.|++.+++- ..+... .+ ...+...+..++++||.++
T Consensus 577 ~--l~~ip~~-~~~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 577 D--IRKVNEK-ITPNISVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp C--CCBCCSC-CCTTCCEEECCSCTT-CEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred c--CCccCHh-HhCcCCEEECcCCCC-ccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7 8888876 458999999888753 333221 11 1122334556788888765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=241.62 Aligned_cols=450 Identities=15% Similarity=0.124 Sum_probs=260.6
Q ss_pred ceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccC
Q 040040 121 EELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFL 200 (869)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~ 200 (869)
+.+++++. .++.++..+ .++|++|+++++ .+..++.. .+..+++|++|+++++ +++.+.... .+.++
T Consensus 3 ~~l~ls~n-~l~~ip~~~----~~~L~~L~Ls~n-~i~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDL----SQKTTILNISQN-YISELWTS----DILSLSKLRILIISHN-RIQYLDISV--FKFNQ 69 (520)
T ss_dssp CEEECTTS-CCSSCCCSC----CTTCSEEECCSS-CCCCCCHH----HHTTCTTCCEEECCSS-CCCEEEGGG--GTTCT
T ss_pred ceEecCCC-Ccccccccc----cccccEEECCCC-cccccChh----hccccccccEEecCCC-ccCCcChHH--hhccc
Confidence 45666663 444554433 278888888888 55554421 1257888888888887 566654332 45788
Q ss_pred CCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCce-eeeccccccccCCccccccccCCcccEEeccCCCCcccc
Q 040040 201 RLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMK-VIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF 279 (869)
Q Consensus 201 ~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 279 (869)
+|++|+++++ +++.+|.. .+++|++|+++++.... .+| ..+..+++|++|+++++. +..
T Consensus 70 ~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p-------------~~~~~l~~L~~L~L~~n~-l~~- 129 (520)
T 2z7x_B 70 ELEYLDLSHN-KLVKISCH----PTVNLKHLDLSFNAFDALPIC-------------KEFGNMSQLKFLGLSTTH-LEK- 129 (520)
T ss_dssp TCCEEECCSS-CCCEEECC----CCCCCSEEECCSSCCSSCCCC-------------GGGGGCTTCCEEEEEESS-CCG-
T ss_pred CCCEEecCCC-ceeecCcc----ccCCccEEeccCCccccccch-------------hhhccCCcceEEEecCcc-cch-
Confidence 8888888888 47777552 78888888888875322 233 345668888888888754 333
Q ss_pred cccccCCCc--CEEEeccccccccccCCCCCcccccC-CceEEEEecCCCCccccChhhHhccCCccEEEEecccc----
Q 040040 280 CSVVAFPNL--ETLKLSAINSETIWHNQLPAMSSCIQ-NLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMD---- 352 (869)
Q Consensus 280 ~~~~~l~~L--~~L~L~~~~l~~i~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~---- 352 (869)
..+..+++| ++|++++|.+.. ....|..+..+. +...+++.++.....+ +...+..+++|+.|+++++..
T Consensus 130 ~~~~~l~~L~L~~L~l~~n~l~~--~~~~~~~l~~l~~~~l~l~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 130 SSVLPIAHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFI-LDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp GGGGGGTTSCEEEEEEEECTTTT--SSCCTTTTTTCCEEEEEEECCSSSCCCCC-CCCCCTTCSEEEECCEEECCSTTTT
T ss_pred hhccccccceeeEEEeecccccc--cccccccccccccceEEEEeccCcchhhh-hhhhhhcccceeecccccccccccc
Confidence 234556677 888888887510 111222222222 1224455555444433 334456778888888877531
Q ss_pred --ccccccccccccccccccccCccceeecccCccccccC-CC--cccCCCCccEEEEccCCccccccccccCCCceEee
Q 040040 353 --LEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFC-SG--NCIELPSLKQLRMAKCPELKAFILQNINTDMTVVG 427 (869)
Q Consensus 353 --l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~-~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 427 (869)
+...+ .....+++|+.|++.++. +..-. .+ .....++|+.|++.+|.--..+|....
T Consensus 207 ~~~~~~~---------~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~-------- 268 (520)
T 2z7x_B 207 SYFLSIL---------AKLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF-------- 268 (520)
T ss_dssp HHHHHHH---------HGGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC--------
T ss_pred ceeecch---------hhhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchh--------
Confidence 11111 124567778888877654 22100 00 001245788888877632223332100
Q ss_pred eeccCcccccccccEEEEeccCCcccccchhHHhhc---CCccEEEEcccCCccccccccccCccccccccccccceeec
Q 040040 428 IQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARF---LKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHV 504 (869)
Q Consensus 428 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 504 (869)
....+.+++|+.++++++.. .+|...+..+ ++|+.|++++|. +..+.. ...+++|++|++
T Consensus 269 ---~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~----------~~~l~~L~~L~L 331 (520)
T 2z7x_B 269 ---DYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC----------PSKISPFLHLDF 331 (520)
T ss_dssp ---CCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC----------CSSCCCCCEEEC
T ss_pred ---hcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCc-cccccc----------hhhCCcccEEEe
Confidence 00013367788888887764 2463333344 678999998864 332211 036788899999
Q ss_pred ccccccccccccCCCCcccCCCccEEEEecCCCcccc--cCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceec
Q 040040 505 FCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSI--FPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFY 582 (869)
Q Consensus 505 ~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l--~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 582 (869)
+++. +... .|..+..+++|++|++++| ++..+ +|..+ ..+++|++|+++++.....++
T Consensus 332 s~n~-l~~~---~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~---------------~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 332 SNNL-LTDT---VFENCGHLTELETLILQMN-QLKELSKIAEMT---------------TQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp CSSC-CCTT---TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHH---------------TTCTTCCEEECCSSCCBCCGG
T ss_pred ECCc-cChh---hhhhhccCCCCCEEEccCC-ccCccccchHHH---------------hhCCCCCEEECCCCcCCcccc
Confidence 8864 4332 2677888889999999874 45542 12222 236788888888876544355
Q ss_pred CCCCCCCCCCCceeeecc-ccCc-cccccceeeEeeecceeccccceeeeecccceeeecc--ccccceEEEeecCCCcc
Q 040040 583 SGMHTLECPERANLIFQL-KNPS-FGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQA--QFHKLKILHFISDGSDF 658 (869)
Q Consensus 583 ~~~~~~~~~~L~~L~l~~-~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 658 (869)
.+... .+++|++|++++ ++.. ++.. ..++|++|++++|.+..++.. .+++|+.|++.+|....
T Consensus 392 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~------------l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 392 KGDCS-WTKSLLSLNMSSNILTDTIFRC------------LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp GCSCC-CCTTCCEEECCSSCCCGGGGGS------------CCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred cchhc-cCccCCEEECcCCCCCcchhhh------------hcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc
Confidence 43221 247777777777 5542 2221 135777777777777765543 26777777775555556
Q ss_pred chHHHHHhccccceEE
Q 040040 659 FQVGLLQNIHNLEKLV 674 (869)
Q Consensus 659 ~p~~~l~~l~~L~~L~ 674 (869)
+|...+..+++|++|+
T Consensus 459 l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 459 VPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCTTTTTTCTTCCEEE
T ss_pred cCHHHhccCCcccEEE
Confidence 6654344444444443
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7e-24 Score=251.66 Aligned_cols=357 Identities=12% Similarity=0.121 Sum_probs=250.4
Q ss_pred CCccccChhhHhccCCccEEEEeccccccc------------------ccccccccccccccc--ccCccceeecccCcc
Q 040040 326 NLKFLFSTSLVRSFVQLQHLEIRKCMDLEG------------------IVFPEEMIEEERKDI--VFPQLNFLKMKDLAK 385 (869)
Q Consensus 326 ~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~------------------i~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 385 (869)
.++.+ |. .++++++|+.|+++++ .++. ++. .+. .+++|+.|++++|.-
T Consensus 436 ~L~~I-P~-~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~---------~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 436 RITFI-SK-AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENE---------ELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp EEEEE-CG-GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTS---------CCCGGGCTTCCEEEEESCTT
T ss_pred cccch-hH-HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCCh---------hhhhccCCCCCEEECcCCCC
Confidence 44444 53 4788999999999986 4555 332 244 789999999999875
Q ss_pred ccccCCCcccCCCCccEEEEccCCcccc--ccccccCCCceEeeeeccC-cccccccccEEEEeccCCcccccch-hHHh
Q 040040 386 LTRFCSGNCIELPSLKQLRMAKCPELKA--FILQNINTDMTVVGIQSFF-NEKSFCKLKLMEVIFCKSLWTIFPH-NMFA 461 (869)
Q Consensus 386 L~~l~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~ 461 (869)
...+| .....+++|+.|+++++..++. +|..- .... ....+++|+.|++++|. +. .+|. ..++
T Consensus 504 ~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i----------~~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~ 570 (876)
T 4ecn_A 504 MTQLP-DFLYDLPELQSLNIACNRGISAAQLKADW----------TRLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQ 570 (876)
T ss_dssp CCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHH----------HHHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHT
T ss_pred CccCh-HHHhCCCCCCEEECcCCCCcccccchHHH----------HhhhhcccccCCccEEEeeCCc-CC-ccCChhhhh
Confidence 55666 3445789999999988764543 44310 0000 01224699999999886 44 3565 3577
Q ss_pred hcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCC-ccEEEEecCCCccc
Q 040040 462 RFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPN-LVLVRIFECQRLKS 540 (869)
Q Consensus 462 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~-L~~L~l~~c~~L~~ 540 (869)
.+++|++|++++| .+..++.+ +.+++|+.|+++++. +..+ |..+..+++ |++|++++| .+..
T Consensus 571 ~L~~L~~L~Ls~N-~l~~lp~~----------~~L~~L~~L~Ls~N~-l~~l----p~~l~~l~~~L~~L~Ls~N-~L~~ 633 (876)
T 4ecn_A 571 KMVKLGLLDCVHN-KVRHLEAF----------GTNVKLTDLKLDYNQ-IEEI----PEDFCAFTDQVEGLGFSHN-KLKY 633 (876)
T ss_dssp TCTTCCEEECTTS-CCCBCCCC----------CTTSEESEEECCSSC-CSCC----CTTSCEECTTCCEEECCSS-CCCS
T ss_pred cCCCCCEEECCCC-Ccccchhh----------cCCCcceEEECcCCc-cccc----hHHHhhccccCCEEECcCC-CCCc
Confidence 8999999999995 45566521 478999999999964 5566 788999999 999999985 5776
Q ss_pred ccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCcee---cCCCCCCCCCCCceeeecc-ccCccccccceeeEee
Q 040040 541 IFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTF---YSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCL 616 (869)
Q Consensus 541 l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~ 616 (869)
+ |..+ + . ...++|+.|+++++..-... +.......+++|+.|++++ .+..++.....
T Consensus 634 l-p~~~--------~--~---~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~----- 694 (876)
T 4ecn_A 634 I-PNIF--------N--A---KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA----- 694 (876)
T ss_dssp C-CSCC--------C--T---TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH-----
T ss_pred C-chhh--------h--c---cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc-----
Confidence 5 6533 0 0 11245999999988654322 2233333456899999999 88877754210
Q ss_pred ecceeccccceeeeecccceeeeccccc----------cceEEEeecCCCccchHHHH-HhccccceEEEE---E---Ee
Q 040040 617 IGQQVFPNLEELTLSKYIFTTWRQAQFH----------KLKILHFISDGSDFFQVGLL-QNIHNLEKLVLK---V---EE 679 (869)
Q Consensus 617 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~l~~~~~~~~p~~~l-~~l~~L~~L~l~---~---~~ 679 (869)
.+++|+.|++++|.+..++...+. +|+.|++++|....+|..+. ..+++|+.|+++ + +.
T Consensus 695 ----~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 695 ----TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp ----TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred ----cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccch
Confidence 258999999999999876665433 89999996666668887643 489999999998 2 22
Q ss_pred cccccccccEEEcCccccccc-cccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhccccCCC
Q 040040 680 HAEGIAQIKSLKLNKLWFIKE-HLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLESSGS 750 (869)
Q Consensus 680 ~~~~~~~L~~L~l~~~~~L~~-~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~l~~ 750 (869)
....+++|+.|++++++.+.. .+....+..+..+++|+.|++++|. +..+|.. .+++|+.|++.+++-
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~--L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND--IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC--CCBCCSC-CCSSSCEEECCSCTT
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC--CCccCHh-hcCCCCEEECCCCCC
Confidence 334588999999987542220 2223445567889999999999997 7888876 457899998888763
No 21
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.6e-24 Score=242.02 Aligned_cols=173 Identities=21% Similarity=0.191 Sum_probs=75.6
Q ss_pred CCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccccc
Q 040040 172 FPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDI 251 (869)
Q Consensus 172 ~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 251 (869)
..+|++|+++++ ++..+|.. ++.+++|++|++++|.-...+|. .++++.+|+.+++.+|.
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~---i~~L~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~l~l~~c~-------------- 69 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVE---AENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCL-------------- 69 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCT--TSCCCHHHHHHHHHHHH--------------
T ss_pred cccchhhhcccC-chhhCChh---HhcccchhhhhccCCcccccCCc--ccccchhcchhhhhhhh--------------
Confidence 345566666554 44444443 44556666666655531112222 44555555444444442
Q ss_pred CCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcccc
Q 040040 252 NNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLF 331 (869)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 331 (869)
..++++|+++++. ++.+|.. .++|++|++++|.++.+ |. .+++|++|+++++ .++.+
T Consensus 70 ----------~~~l~~L~l~~~~-l~~lp~~--~~~L~~L~l~~n~l~~l-----p~---~~~~L~~L~l~~n-~l~~l- 126 (454)
T 1jl5_A 70 ----------DRQAHELELNNLG-LSSLPEL--PPHLESLVASCNSLTEL-----PE---LPQSLKSLLVDNN-NLKAL- 126 (454)
T ss_dssp ----------HHTCSEEECTTSC-CSCCCSC--CTTCSEEECCSSCCSSC-----CC---CCTTCCEEECCSS-CCSCC-
T ss_pred ----------ccCCCEEEecCCc-cccCCCC--cCCCCEEEccCCcCCcc-----cc---ccCCCcEEECCCC-ccCcc-
Confidence 1345667776653 5555442 46777777777764442 21 1356777777664 34443
Q ss_pred ChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 332 STSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 332 ~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
+. ..++|++|+++++ .++.++ ....+++|++|+++++. ++.++.. .++|+.|++.+
T Consensus 127 ~~----~~~~L~~L~L~~n-~l~~lp----------~~~~l~~L~~L~l~~N~-l~~lp~~----~~~L~~L~L~~ 182 (454)
T 1jl5_A 127 SD----LPPLLEYLGVSNN-QLEKLP----------ELQNSSFLKIIDVDNNS-LKKLPDL----PPSLEFIAAGN 182 (454)
T ss_dssp CS----CCTTCCEEECCSS-CCSSCC----------CCTTCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCS
T ss_pred cC----CCCCCCEEECcCC-CCCCCc----------ccCCCCCCCEEECCCCc-CcccCCC----cccccEEECcC
Confidence 11 1246777777664 344432 13355666666666653 4444321 23455555544
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.2e-22 Score=234.87 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=91.2
Q ss_pred CCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCccccc-
Q 040040 464 LKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIF- 542 (869)
Q Consensus 464 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~- 542 (869)
.+|++|+++++. +..+.. .+.+++|++|+++++. ++.. .|..+..+++|++|++++ ++++.+-
T Consensus 331 ~~L~~L~l~~n~-~~~~~~----------~~~l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~L~~-N~l~~~~~ 394 (562)
T 3a79_B 331 MNIKMLSISDTP-FIHMVC----------PPSPSSFTFLNFTQNV-FTDS---VFQGCSTLKRLQTLILQR-NGLKNFFK 394 (562)
T ss_dssp CCCSEEEEESSC-CCCCCC----------CSSCCCCCEEECCSSC-CCTT---TTTTCCSCSSCCEEECCS-SCCCBTTH
T ss_pred CcceEEEccCCC-cccccC----------ccCCCCceEEECCCCc-cccc---hhhhhcccCCCCEEECCC-CCcCCccc
Confidence 567778877754 222210 0256777888887753 3332 256677777888888876 3555431
Q ss_pred -CccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecce
Q 040040 543 -PTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQ 620 (869)
Q Consensus 543 -p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~ 620 (869)
|..+ ..+++|+.|+++++.....++.+... .+++|++|++++ ++.......
T Consensus 395 ~~~~~---------------~~l~~L~~L~l~~N~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~----------- 447 (562)
T 3a79_B 395 VALMT---------------KNMSSLETLDVSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSVFRC----------- 447 (562)
T ss_dssp HHHTT---------------TTCTTCCEEECTTSCCBSCCSSCCCC-CCTTCCEEECCSSCCCGGGGSS-----------
T ss_pred chhhh---------------cCCCCCCEEECCCCcCCCccChhhhc-CcccCCEEECCCCCCCcchhhh-----------
Confidence 1111 12567777777776543334433211 236677777766 553211111
Q ss_pred eccccceeeeecccceeeeccc--cccceEEEeecCCCccchHHHHHhccccceEE
Q 040040 621 VFPNLEELTLSKYIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLV 674 (869)
Q Consensus 621 ~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~ 674 (869)
..++|++|++++|.+..++... +++|+.|++++|....+|...+..+++|+.|+
T Consensus 448 l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred hcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 1256777777777666555432 56677777755555555544344444444333
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.6e-22 Score=232.66 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=75.3
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
+++++|+++++ .++.++... +..+++|++|+|+++ +++.++.+. .+.+++|++|+|++| +++.+|+ ..++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~----f~~l~~L~~L~Ls~N-~i~~i~~~~--f~~L~~L~~L~Ls~N-~l~~l~~-~~f~ 121 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYS----FFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGN-PIQSLAL-GAFS 121 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTT----TTTCTTCCEEECTTC-CCCEECTTT--TTTCTTCCEEECTTC-CCCEECG-GGGT
T ss_pred cCCCEEEeeCC-CCCCCCHHH----HhCCCCCCEEECCCC-cCCCcChhH--hcCCCCCCEEEccCC-cCCCCCH-HHhc
Confidence 36777777776 566665432 356677777777776 566665443 235677777777776 3666654 4566
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccc---cccccCCCcCEEEeccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF---CSVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~L~~~~l~~ 300 (869)
++++|++|+++++. +..++. ..+..+++|++|+++++. +..+ .....+++|++|++++|.++.
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~------------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCCCEEECCCCc-CCCCCh------------hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccc
Confidence 77777777777653 444431 123345666666665532 2221 113345556666666555443
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=4.3e-21 Score=226.20 Aligned_cols=492 Identities=13% Similarity=0.070 Sum_probs=287.2
Q ss_pred hccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccc
Q 040040 117 LKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRA 196 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~ 196 (869)
.++++.|++++ +.++.+.+... .++++|++|++++| .++.++... +..+++|++|+|+++ +++.++.+. .
T Consensus 51 p~~~~~LdLs~-N~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~~~~----f~~L~~L~~L~Ls~N-~l~~l~~~~--f 120 (635)
T 4g8a_A 51 PFSTKNLDLSF-NPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGA----YQSLSHLSTLILTGN-PIQSLALGA--F 120 (635)
T ss_dssp CTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTT----TTTCTTCCEEECTTC-CCCEECGGG--G
T ss_pred CcCCCEEEeeC-CCCCCCCHHHH-hCCCCCCEEECCCC-cCCCcChhH----hcCCCCCCEEEccCC-cCCCCCHHH--h
Confidence 35789999998 56666654322 78999999999998 788887643 468999999999998 688887654 3
Q ss_pred cccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCc
Q 040040 197 ESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQL 276 (869)
Q Consensus 197 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 276 (869)
+.+++|++|++++| +++.+++ ..++++++|++|+++++. +..++.. ..+..+++|++|+++++. +
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~-----------~~~~~l~~L~~L~L~~N~-l 185 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL-IQSFKLP-----------EYFSNLTNLEHLDLSSNK-I 185 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC-CCCCCCC-----------GGGGGCTTCCEEECCSSC-C
T ss_pred cCCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCc-cccCCCc-----------hhhccchhhhhhcccCcc-c
Confidence 47999999999999 5888865 468999999999999875 3332210 234568999999998854 4
Q ss_pred ccccc--cccCC----CcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 277 RSFCS--VVAFP----NLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 277 ~~~~~--~~~l~----~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
+.++. +..+. ....++++.+.+..+....+. ...++.+.+.+......+ ....+..+..++...+...
T Consensus 186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-----~~~~~~l~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-----TCEEEEEEEESCCSSHHH-HHHHHHTTTTCEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhhhcccCcccccCccccc-----chhhhhhhhhcccccccc-cchhhcCCccccccccccc
Confidence 43321 11222 334677777765554333222 234555666543221111 2233455566655544321
Q ss_pred c--c---cccccccc-------------------ccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEc
Q 040040 351 M--D---LEGIVFPE-------------------EMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMA 406 (869)
Q Consensus 351 ~--~---l~~i~~~~-------------------~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~ 406 (869)
. . +....... ...........+.+++.+.+.++. +..+.. ......|+.|++.
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~--~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 260 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKD--FSYNFGWQHLELV 336 (635)
T ss_dssp CCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGG--GGSCCCCSEEEEE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccc--cccchhhhhhhcc
Confidence 1 0 00000000 000000012334556666666554 222221 2235678888887
Q ss_pred cCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCcccccccccc
Q 040040 407 KCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQEL 486 (869)
Q Consensus 407 ~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 486 (869)
+|. +..++ ...+..|+.+.+.++.... . +. ...+++|+.|+++++ .+......
T Consensus 337 ~~~-~~~~~------------------~~~l~~L~~l~l~~n~~~~-~-~~--~~~l~~L~~L~ls~n-~l~~~~~~--- 389 (635)
T 4g8a_A 337 NCK-FGQFP------------------TLKLKSLKRLTFTSNKGGN-A-FS--EVDLPSLEFLDLSRN-GLSFKGCC--- 389 (635)
T ss_dssp SCE-ESSCC------------------CCBCTTCCEEEEESCCSCC-B-CC--CCBCTTCCEEECCSS-CCBEEEEC---
T ss_pred ccc-ccCcC------------------cccchhhhhcccccccCCC-C-cc--cccccccccchhhcc-cccccccc---
Confidence 753 22221 1236788888887765332 2 21 235788999998873 33222110
Q ss_pred CccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccc
Q 040040 487 NSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPS 566 (869)
Q Consensus 487 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~ 566 (869)
.... ....+|+.|++..+.. ..+ +..+..+++|+.+++.+++..... +... . ..+++
T Consensus 390 -~~~~--~~~~~L~~L~~~~~~~-~~~----~~~~~~l~~L~~l~l~~~~~~~~~-~~~~------------~--~~l~~ 446 (635)
T 4g8a_A 390 -SQSD--FGTISLKYLDLSFNGV-ITM----SSNFLGLEQLEHLDFQHSNLKQMS-EFSV------------F--LSLRN 446 (635)
T ss_dssp -CHHH--HSCSCCCEEECCSCSE-EEE----CSCCTTCTTCCEEECTTSEEESTT-SSCT------------T--TTCTT
T ss_pred -ccch--hhhhhhhhhhcccccc-ccc----cccccccccccchhhhhccccccc-cccc------------c--ccccc
Confidence 0011 2566788888877543 333 456778888888888875443332 2100 0 12567
Q ss_pred cceEeecCCCCCceecCCCCCCCCCCCceeeecc-c-cCccccccceeeEeeecceeccccceeeeecccceeeeccc--
Q 040040 567 LTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-K-NPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQ-- 642 (869)
Q Consensus 567 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 642 (869)
++.++++.+..-...+.... .+++++.|++++ . ...+..... ..+++|++|++++|.+.++.+..
T Consensus 447 l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~~---------~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIF---------TELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp CCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccccccccccccc--cchhhhhhhhhhcccccccCchhh---------hhccccCEEECCCCccCCcChHHHc
Confidence 78888877643222222222 247888888877 3 332221110 02678888888888888877654
Q ss_pred -cccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccccEEEcCccccccccccCCCCCccccc-CCccEEE
Q 040040 643 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFL-QNLEFLE 720 (869)
Q Consensus 643 -~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l-~~L~~L~ 720 (869)
+++|++|++++|....+|...++.+ ++|+.|+++++ .++ ...+..+..+ ++|++|+
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l-----------------~~L~~L~Ls~N-~l~----~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCL-----------------NSLQVLDYSLN-HIM----TSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTC-----------------TTCCEEECTTS-CCC----BCCSSCTTCCCTTCCEEE
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCC-----------------CCCCEEECCCC-cCC----CCCHHHHHhhhCcCCEEE
Confidence 6778888886555555544434444 45555556664 233 2233445555 6788888
Q ss_pred Eeccc
Q 040040 721 VKECA 725 (869)
Q Consensus 721 l~~c~ 725 (869)
+++|+
T Consensus 574 L~~Np 578 (635)
T 4g8a_A 574 LTQND 578 (635)
T ss_dssp CTTCC
T ss_pred eeCCC
Confidence 88776
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1e-22 Score=227.37 Aligned_cols=399 Identities=17% Similarity=0.133 Sum_probs=163.1
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccc-ccccccccccccCCC-------------CEEEe
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLE-KISCSQLRAESFLRL-------------RNLKV 207 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~l~~L-------------~~L~L 207 (869)
...+|++|.++++ .++.+|..+ +.+++|++|+++++. +. .+|.. ++.+.+| ++|++
T Consensus 9 ~~~~L~~L~l~~n-~l~~iP~~i-----~~L~~L~~L~l~~n~-~~~~~p~~---~~~l~~L~~l~l~~c~~~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTEMPVEA-----ENVKSKTEYYNAWSE-WERNAPPG---NGEQREMAVSRLRDCLDRQAHELEL 78 (454)
T ss_dssp -------------------------------CCHHHHHHHHHH-HHHTSCTT---SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred ccccchhhhcccC-chhhCChhH-----hcccchhhhhccCCc-ccccCCcc---cccchhcchhhhhhhhccCCCEEEe
Confidence 4588999999998 678888765 789999999999984 43 44443 4566655 66666
Q ss_pred cCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCC
Q 040040 208 ESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPN 287 (869)
Q Consensus 208 ~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~ 287 (869)
++|. ++.+|.. .++|++|+++++. ++.+|. .+++|++|+++++ .+..++.. .++
T Consensus 79 ~~~~-l~~lp~~-----~~~L~~L~l~~n~-l~~lp~----------------~~~~L~~L~l~~n-~l~~l~~~--~~~ 132 (454)
T 1jl5_A 79 NNLG-LSSLPEL-----PPHLESLVASCNS-LTELPE----------------LPQSLKSLLVDNN-NLKALSDL--PPL 132 (454)
T ss_dssp TTSC-CSCCCSC-----CTTCSEEECCSSC-CSSCCC----------------CCTTCCEEECCSS-CCSCCCSC--CTT
T ss_pred cCCc-cccCCCC-----cCCCCEEEccCCc-CCcccc----------------ccCCCcEEECCCC-ccCcccCC--CCC
Confidence 6663 5555431 2566666665543 333331 1245555555543 23333221 135
Q ss_pred cCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccc
Q 040040 288 LETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEER 367 (869)
Q Consensus 288 L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~ 367 (869)
|++|++++|.++.+ |. ++.+++|++|+++++ .++.+ |. ...+|++|++
T Consensus 133 L~~L~L~~n~l~~l-----p~-~~~l~~L~~L~l~~N-~l~~l-p~----~~~~L~~L~L-------------------- 180 (454)
T 1jl5_A 133 LEYLGVSNNQLEKL-----PE-LQNSSFLKIIDVDNN-SLKKL-PD----LPPSLEFIAA-------------------- 180 (454)
T ss_dssp CCEEECCSSCCSSC-----CC-CTTCTTCCEEECCSS-CCSCC-CC----CCTTCCEEEC--------------------
T ss_pred CCEEECcCCCCCCC-----cc-cCCCCCCCEEECCCC-cCccc-CC----CcccccEEEC--------------------
Confidence 55555555543321 21 233445555555443 23332 21 1234444444
Q ss_pred cccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEec
Q 040040 368 KDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIF 447 (869)
Q Consensus 368 ~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 447 (869)
+++. ++.++. ...+++|+.|++.+| .++.+|. .+++|++|++++
T Consensus 181 -------------~~n~-l~~l~~--~~~l~~L~~L~l~~N-~l~~l~~-------------------~~~~L~~L~l~~ 224 (454)
T 1jl5_A 181 -------------GNNQ-LEELPE--LQNLPFLTAIYADNN-SLKKLPD-------------------LPLSLESIVAGN 224 (454)
T ss_dssp -------------CSSC-CSSCCC--CTTCTTCCEEECCSS-CCSSCCC-------------------CCTTCCEEECCS
T ss_pred -------------cCCc-CCcCcc--ccCCCCCCEEECCCC-cCCcCCC-------------------CcCcccEEECcC
Confidence 4442 333331 233445555555443 2222221 124566666666
Q ss_pred cCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCc
Q 040040 448 CKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNL 527 (869)
Q Consensus 448 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L 527 (869)
|. +.. +|. ++.+++|++|+++++ .+..++. .+++|++|+++++ .++.+ |.. +++|
T Consensus 225 n~-l~~-lp~--~~~l~~L~~L~l~~N-~l~~l~~------------~~~~L~~L~l~~N-~l~~l----~~~---~~~L 279 (454)
T 1jl5_A 225 NI-LEE-LPE--LQNLPFLTTIYADNN-LLKTLPD------------LPPSLEALNVRDN-YLTDL----PEL---PQSL 279 (454)
T ss_dssp SC-CSS-CCC--CTTCTTCCEEECCSS-CCSSCCS------------CCTTCCEEECCSS-CCSCC----CCC---CTTC
T ss_pred Cc-CCc-ccc--cCCCCCCCEEECCCC-cCCcccc------------cccccCEEECCCC-ccccc----Ccc---cCcC
Confidence 53 332 342 445666666666663 3444332 3456666666664 34444 322 3566
Q ss_pred cEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccc
Q 040040 528 VLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFG 606 (869)
Q Consensus 528 ~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~ 606 (869)
++|++++| .+..+ |. .+++|+.|+++++. +..++.. .++|++|++++ ++..++
T Consensus 280 ~~L~ls~N-~l~~l-~~------------------~~~~L~~L~l~~N~-l~~i~~~-----~~~L~~L~Ls~N~l~~lp 333 (454)
T 1jl5_A 280 TFLDVSEN-IFSGL-SE------------------LPPNLYYLNASSNE-IRSLCDL-----PPSLEELNVSNNKLIELP 333 (454)
T ss_dssp CEEECCSS-CCSEE-SC------------------CCTTCCEEECCSSC-CSEECCC-----CTTCCEEECCSSCCSCCC
T ss_pred CEEECcCC-ccCcc-cC------------------cCCcCCEEECcCCc-CCcccCC-----cCcCCEEECCCCcccccc
Confidence 66666653 34443 21 13566666666653 2333211 14666777766 665554
Q ss_pred cccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCC-Cc--cchHHHHHhccccceEEEE--EEecc
Q 040040 607 SKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDG-SD--FFQVGLLQNIHNLEKLVLK--VEEHA 681 (869)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~~p~~~l~~l~~L~~L~l~--~~~~~ 681 (869)
. .+++|++|++++|.+..++. .+++|+.|++++|. .+ .+|.+ +..|... .....
T Consensus 334 ~-------------~~~~L~~L~L~~N~l~~lp~-~l~~L~~L~L~~N~l~~l~~ip~~-------l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 334 A-------------LPPRLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLREFPDIPES-------VEDLRMNSHLAEVP 392 (454)
T ss_dssp C-------------CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTT-------CCEEECCC------
T ss_pred c-------------cCCcCCEEECCCCccccccc-hhhhccEEECCCCCCCcCCCChHH-------HHhhhhcccccccc
Confidence 4 24667777777776665554 56677777773333 33 34432 2222111 11111
Q ss_pred cccccccEEEcCccccccccccCCCCCcccccCCccEEEEeccc
Q 040040 682 EGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECA 725 (869)
Q Consensus 682 ~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~ 725 (869)
..+++|+.|++++++ ++ .+ + .-.++|+.|.+.+|.
T Consensus 393 ~~~~~L~~L~ls~N~-l~-~~-----~--~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 393 ELPQNLKQLHVETNP-LR-EF-----P--DIPESVEDLRMNSER 427 (454)
T ss_dssp --------------------------------------------
T ss_pred cccCcCCEEECCCCc-CC-cc-----c--cchhhHhheeCcCcc
Confidence 224677888887742 33 11 0 112567778888875
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.1e-20 Score=218.52 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=96.8
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.+...++++++++ +++.+|... +++|++|+++++ .++.++... .+.+++|++|++++| +++.+++ ..
T Consensus 29 ~~~~~~~l~ls~~-~L~~ip~~~-------~~~L~~L~Ls~N-~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~-~~ 95 (562)
T 3a79_B 29 SNELESMVDYSNR-NLTHVPKDL-------PPRTKALSLSQN-SISELRMPD--ISFLSELRVLRLSHN-RIRSLDF-HV 95 (562)
T ss_dssp ----CCEEECTTS-CCCSCCTTS-------CTTCCEEECCSS-CCCCCCGGG--TTTCTTCCEEECCSC-CCCEECT-TT
T ss_pred ccCCCcEEEcCCC-CCccCCCCC-------CCCcCEEECCCC-CccccChhh--hccCCCccEEECCCC-CCCcCCH-HH
Confidence 3455588888887 677777533 478888888887 566665433 457888888888888 4777755 46
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc---ccccCCCcCEEEeccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC---SVVAFPNLETLKLSAINS 298 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~L~~~~l 298 (869)
++++++|++|+++++. ++.+|. . .+++|++|+++++. +..++ .+..+++|++|++++|.+
T Consensus 96 ~~~l~~L~~L~Ls~N~-l~~lp~-------------~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNR-LQNISC-------------C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTTCTTCCEEECTTSC-CCEECS-------------C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred hCCCCCCCEEECCCCc-CCccCc-------------c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcc
Confidence 7888888888888865 566662 1 47788888887754 43332 355677777777777764
Q ss_pred cccccCCCCCcccccCCc--eEEEEecCC
Q 040040 299 ETIWHNQLPAMSSCIQNL--TRLIVHGCN 325 (869)
Q Consensus 299 ~~i~~~~~~~~~~~l~~L--~~L~l~~c~ 325 (869)
... .+ ..+++| ++|+++++.
T Consensus 159 ~~~---~~----~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 159 RQL---DL----LPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTT---TT----GGGTTSCEEEEEEEESS
T ss_pred ccC---ch----hhhhhceeeEEEeeccc
Confidence 431 11 223444 777777754
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1e-20 Score=213.15 Aligned_cols=343 Identities=17% Similarity=0.235 Sum_probs=242.4
Q ss_pred HhccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccc
Q 040040 116 QLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLR 195 (869)
Q Consensus 116 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 195 (869)
.+++++.|++.++ .+..+. .+ ..+++|++|+++++ .++.++. ...+++|++|+++++ .+..++.
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~-~~--~~l~~L~~L~Ls~n-~l~~~~~------~~~l~~L~~L~l~~n-~l~~~~~---- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSID-GV--EYLNNLTQINFSNN-QLTDITP------LKNLTKLVDILMNNN-QIADITP---- 107 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCT-TG--GGCTTCCEEECCSS-CCCCCGG------GTTCTTCCEEECCSS-CCCCCGG----
T ss_pred HhccccEEecCCC-CCccCc-ch--hhhcCCCEEECCCC-ccCCchh------hhccccCCEEECCCC-ccccChh----
Confidence 4678899998874 343332 33 56899999999998 5666653 368899999999998 5665543
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
.+.+++|++|++++| .++.++ .++++++|++|++++|. +..++ .+..+++|++|++.+ .
T Consensus 108 ~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~l~~--~ 166 (466)
T 1o6v_A 108 LANLTNLTGLTLFNN-QITDID---PLKNLTNLNRLELSSNT-ISDIS--------------ALSGLTSLQQLSFGN--Q 166 (466)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCSEEEEEEEE-ECCCG--------------GGTTCTTCSEEEEEE--S
T ss_pred hcCCCCCCEEECCCC-CCCCCh---HHcCCCCCCEEECCCCc-cCCCh--------------hhccCCcccEeecCC--c
Confidence 458999999999998 477774 37899999999999975 44443 345688999999864 4
Q ss_pred cccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 276 LRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 276 l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
+..++.+..+++|++|++++|.+..+ + .+..+++|++|++++|. +..+.+ ++.+++|++|++++| .++.
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~ 235 (466)
T 1o6v_A 167 VTDLKPLANLTTLERLDISSNKVSDI-----S-VLAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGN-QLKD 235 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCC-----G-GGGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCC
T ss_pred ccCchhhccCCCCCEEECcCCcCCCC-----h-hhccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCC-Cccc
Confidence 45555677889999999999986553 1 14568899999999864 555433 577899999999986 4554
Q ss_pred cccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCccc
Q 040040 356 IVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEK 435 (869)
Q Consensus 356 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 435 (869)
+. ....+++|+.|+++++. +..++. ...+++|+.|++.+|. +..++. ..
T Consensus 236 ~~----------~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-----------------~~ 284 (466)
T 1o6v_A 236 IG----------TLASLTNLTDLDLANNQ-ISNLAP--LSGLTKLTELKLGANQ-ISNISP-----------------LA 284 (466)
T ss_dssp CG----------GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSC-CCCCGG-----------------GT
T ss_pred ch----------hhhcCCCCCEEECCCCc-cccchh--hhcCCCCCEEECCCCc-cCcccc-----------------cc
Confidence 31 24578899999999886 555543 4457888888887753 333321 12
Q ss_pred ccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccc
Q 040040 436 SFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWN 515 (869)
Q Consensus 436 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 515 (869)
.+++|+.|++++|. +... +. +..+++|++|++++|. +..++.. +.+++|++|++++| .++.+
T Consensus 285 ~l~~L~~L~L~~n~-l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~~----------~~l~~L~~L~l~~n-~l~~~-- 346 (466)
T 1o6v_A 285 GLTALTNLELNENQ-LEDI-SP--ISNLKNLTYLTLYFNN-ISDISPV----------SSLTKLQRLFFYNN-KVSDV-- 346 (466)
T ss_dssp TCTTCSEEECCSSC-CSCC-GG--GGGCTTCSEEECCSSC-CSCCGGG----------GGCTTCCEEECCSS-CCCCC--
T ss_pred CCCccCeEEcCCCc-ccCc-hh--hcCCCCCCEEECcCCc-CCCchhh----------ccCccCCEeECCCC-ccCCc--
Confidence 36888888888875 4433 32 5678888888888863 4443321 46788888888886 45544
Q ss_pred cCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCC
Q 040040 516 KDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLP 576 (869)
Q Consensus 516 ~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 576 (869)
..+..+++|+.|++++| .+..+.|. ..+++|+.|++++|+
T Consensus 347 ---~~l~~l~~L~~L~l~~n-~l~~~~~~-----------------~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 347 ---SSLANLTNINWLSAGHN-QISDLTPL-----------------ANLTRITQLGLNDQA 386 (466)
T ss_dssp ---GGGTTCTTCCEEECCSS-CCCBCGGG-----------------TTCTTCCEEECCCEE
T ss_pred ---hhhccCCCCCEEeCCCC-ccCccchh-----------------hcCCCCCEEeccCCc
Confidence 35777888888888875 45554332 235777777777664
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.9e-21 Score=215.73 Aligned_cols=222 Identities=20% Similarity=0.193 Sum_probs=134.1
Q ss_pred HhccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccc
Q 040040 116 QLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLR 195 (869)
Q Consensus 116 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 195 (869)
.+++++.|+++++ .+..++ .+ ..+++|++|+++++ .++.++ ...+++|++|+++++ .++.++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~-~l--~~l~~L~~L~Ls~n-~l~~~~-------~~~l~~L~~L~Ls~N-~l~~~~----- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT-GI--EKLTGLTKLICTSN-NITTLD-------LSQNTNLTYLACDSN-KLTNLD----- 101 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT-TG--GGCTTCSEEECCSS-CCSCCC-------CTTCTTCSEEECCSS-CCSCCC-----
T ss_pred HcCCCCEEEccCC-CcccCh-hh--cccCCCCEEEccCC-cCCeEc-------cccCCCCCEEECcCC-CCceee-----
Confidence 4577777777764 343332 33 56777778877777 455543 256777777777776 455542
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
.+.+++|++|++++| +++.++ ++.+++|++|+++++. +..++ +..+++|++|+++++..
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~---------------l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID---------------VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC---------------CTTCTTCCEEECTTCSC
T ss_pred cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec---------------cccCCcCCEEECCCCCc
Confidence 346777777777777 466552 5677777777777654 33322 23467777777777765
Q ss_pred cccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 276 LRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 276 l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
+..+ .+..+++|++|++++|.++.+. ++.+++|+.|++++| .++.+ + ++.+++|++|+++++ .++.
T Consensus 161 ~~~~-~~~~l~~L~~L~ls~n~l~~l~-------l~~l~~L~~L~l~~N-~l~~~-~---l~~l~~L~~L~Ls~N-~l~~ 226 (457)
T 3bz5_A 161 ITKL-DVTPQTQLTTLDCSFNKITELD-------VSQNKLLNRLNCDTN-NITKL-D---LNQNIQLTFLDCSSN-KLTE 226 (457)
T ss_dssp CCCC-CCTTCTTCCEEECCSSCCCCCC-------CTTCTTCCEEECCSS-CCSCC-C---CTTCTTCSEEECCSS-CCSC
T ss_pred cccc-ccccCCcCCEEECCCCccceec-------cccCCCCCEEECcCC-cCCee-c---cccCCCCCEEECcCC-cccc
Confidence 5555 3456677777777777655432 234667777777664 34443 2 456677777777764 4444
Q ss_pred cccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEE
Q 040040 356 IVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRM 405 (869)
Q Consensus 356 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l 405 (869)
++ ...+++|+.|+++++. ++.++.+ .+++|+.|++
T Consensus 227 ip-----------~~~l~~L~~L~l~~N~-l~~~~~~---~l~~L~~L~l 261 (457)
T 3bz5_A 227 ID-----------VTPLTQLTYFDCSVNP-LTELDVS---TLSKLTTLHC 261 (457)
T ss_dssp CC-----------CTTCTTCSEEECCSSC-CSCCCCT---TCTTCCEEEC
T ss_pred cC-----------ccccCCCCEEEeeCCc-CCCcCHH---HCCCCCEEec
Confidence 32 2355666777766654 4444321 2455555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=2.2e-20 Score=210.53 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=112.9
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.++++++|++.++ .++.++. ...+++|++|+++++ .++.++. .+.+++|++|++++|. ++.+++
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~------~~~l~~L~~L~Ls~n-~l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~--- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG------VEYLNNLTQINFSNN-QLTDITP----LKNLTKLVDILMNNNQ-IADITP--- 107 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCCCGG---
T ss_pred HhccccEEecCCC-CCccCcc------hhhhcCCCEEECCCC-ccCCchh----hhccccCCEEECCCCc-cccChh---
Confidence 3678899998887 5665543 246788888888887 5666543 4578888888888874 666532
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i 301 (869)
++++++|++|++++|. +..++ .+..+++|++|+++++. +..++.+..+++|++|++.++ +..
T Consensus 108 ~~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~-~~~- 169 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQ-ITDID--------------PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ-VTD- 169 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG--------------GGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES-CCC-
T ss_pred hcCCCCCCEEECCCCC-CCCCh--------------HHcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc-ccC-
Confidence 7788888888888764 44443 13446677777776643 444455556666666666432 111
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMK 381 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 381 (869)
.+. ++.+++|++|++++|. ++.+ ..+..+++|++|++++| .+..+.. ...+++|+.|+++
T Consensus 170 ----~~~-~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n-~l~~~~~----------~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 170 ----LKP-LANLTTLERLDISSNK-VSDI---SVLAKLTNLESLIATNN-QISDITP----------LGILTNLDELSLN 229 (466)
T ss_dssp ----CGG-GTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCCCGG----------GGGCTTCCEEECC
T ss_pred ----chh-hccCCCCCEEECcCCc-CCCC---hhhccCCCCCEEEecCC-ccccccc----------ccccCCCCEEECC
Confidence 111 3345666666666643 3433 12455666666666664 2332211 2345556666665
Q ss_pred cCc
Q 040040 382 DLA 384 (869)
Q Consensus 382 ~~~ 384 (869)
++.
T Consensus 230 ~n~ 232 (466)
T 1o6v_A 230 GNQ 232 (466)
T ss_dssp SSC
T ss_pred CCC
Confidence 553
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=3.4e-20 Score=200.69 Aligned_cols=190 Identities=17% Similarity=0.224 Sum_probs=96.7
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
+++|++|+++++ .+..++. ...+++|++|+++++ .++.++. ...+++|++|++++| .++.+ +.+
T Consensus 43 l~~L~~L~l~~~-~i~~~~~------~~~~~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~L~~n-~i~~~---~~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASIQG------IEYLTNLEYLNLNGN-QITDISP----LSNLVKLTNLYIGTN-KITDI---SAL 106 (347)
T ss_dssp HTTCSEEECCSS-CCCCCTT------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCC---GGG
T ss_pred cccccEEEEeCC-ccccchh------hhhcCCccEEEccCC-ccccchh----hhcCCcCCEEEccCC-cccCc---hHH
Confidence 455566666555 3443332 134556666666655 4444332 235566666666665 34443 245
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIW 302 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~ 302 (869)
.++++|++|++++|. +..++ .+..+++|++|+++++..+..++....+++|++|++++|.+..+.
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~--------------~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDIS--------------PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCG--------------GGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred cCCCcCCEEECcCCc-ccCch--------------hhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch
Confidence 566666666666543 33333 133455666666666655555555555666666666666533321
Q ss_pred cCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeeccc
Q 040040 303 HNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKD 382 (869)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 382 (869)
. +..+++|++|++++| .++.+.+ +..+++|+.|+++++ .+..+. ....+++|++|++++
T Consensus 172 ~------~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~----------~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 172 P------IANLTDLYSLSLNYN-QIEDISP---LASLTSLHYFTAYVN-QITDIT----------PVANMTRLNSLKIGN 230 (347)
T ss_dssp G------GGGCTTCSEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCG----------GGGGCTTCCEEECCS
T ss_pred h------hccCCCCCEEEccCC-ccccccc---ccCCCccceeecccC-CCCCCc----------hhhcCCcCCEEEccC
Confidence 1 234556666666654 2333311 455666666666654 233221 123455555555555
Q ss_pred Cc
Q 040040 383 LA 384 (869)
Q Consensus 383 ~~ 384 (869)
+.
T Consensus 231 n~ 232 (347)
T 4fmz_A 231 NK 232 (347)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=3.8e-20 Score=206.71 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=79.1
Q ss_pred cccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeeccccccccccccc
Q 040040 437 FCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNK 516 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 516 (869)
+++|+.|++++|. +.. +| +..+++|++|+++++ .++.++. +.+++|+.|++++
T Consensus 211 l~~L~~L~Ls~N~-l~~-ip---~~~l~~L~~L~l~~N-~l~~~~~-----------~~l~~L~~L~l~~---------- 263 (457)
T 3bz5_A 211 NIQLTFLDCSSNK-LTE-ID---VTPLTQLTYFDCSVN-PLTELDV-----------STLSKLTTLHCIQ---------- 263 (457)
T ss_dssp CTTCSEEECCSSC-CSC-CC---CTTCTTCSEEECCSS-CCSCCCC-----------TTCTTCCEEECTT----------
T ss_pred CCCCCEEECcCCc-ccc-cC---ccccCCCCEEEeeCC-cCCCcCH-----------HHCCCCCEEeccC----------
Confidence 4566666666554 333 24 345667777777663 3443321 2455555555443
Q ss_pred CCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCcee
Q 040040 517 DPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANL 596 (869)
Q Consensus 517 ~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 596 (869)
.+|+.|++++|+.+..+ |. ..+++|+.|++++|+.++.++.. +++|+.|
T Consensus 264 --------n~L~~L~l~~n~~~~~~-~~-----------------~~l~~L~~L~Ls~n~~l~~l~~~-----~~~L~~L 312 (457)
T 3bz5_A 264 --------TDLLEIDLTHNTQLIYF-QA-----------------EGCRKIKELDVTHNTQLYLLDCQ-----AAGITEL 312 (457)
T ss_dssp --------CCCSCCCCTTCTTCCEE-EC-----------------TTCTTCCCCCCTTCTTCCEEECT-----TCCCSCC
T ss_pred --------CCCCEEECCCCccCCcc-cc-----------------cccccCCEEECCCCcccceeccC-----CCcceEe
Confidence 13444455555544443 32 12567777777777766666542 2555555
Q ss_pred eeccccCccccccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCc
Q 040040 597 IFQLKNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSD 657 (869)
Q Consensus 597 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~ 657 (869)
++++ .++|++|++++|.+.++.-..+++|+.|++++|...
T Consensus 313 ~l~~---------------------~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 313 DLSQ---------------------NPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCTT---------------------CTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred chhh---------------------cccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 5433 467777777777776654444667777777444433
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.6e-19 Score=203.34 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
++|++|+++++ .++++.... .+.+++|++|++++|.....+++ ..++++++|++|+++++.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS--FSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT--TSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTCT
T ss_pred CccCEEEecCC-ccCcCChhH--hccCccccEEECcCCcccceECc-ccccccccCCEEeCCCCc
Confidence 56777777766 455543222 34666777777776643223332 356666677777766654
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=2.1e-19 Score=194.45 Aligned_cols=282 Identities=15% Similarity=0.210 Sum_probs=199.8
Q ss_pred HHhccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccc
Q 040040 115 TQLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQL 194 (869)
Q Consensus 115 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 194 (869)
..+++++.+++.++ .+..+ +.+ ..+++|++|+++++ .+..++. ...+++|++|+++++ .++.++.
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~-~~~--~~~~~L~~L~l~~n-~i~~~~~------~~~l~~L~~L~L~~n-~i~~~~~--- 105 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASI-QGI--EYLTNLEYLNLNGN-QITDISP------LSNLVKLTNLYIGTN-KITDISA--- 105 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCC-TTG--GGCTTCCEEECCSS-CCCCCGG------GTTCTTCCEEECCSS-CCCCCGG---
T ss_pred hhcccccEEEEeCC-ccccc-hhh--hhcCCccEEEccCC-ccccchh------hhcCCcCCEEEccCC-cccCchH---
Confidence 35789999999884 34333 233 66899999999998 6666654 368999999999998 6776642
Q ss_pred cccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCC
Q 040040 195 RAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLP 274 (869)
Q Consensus 195 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 274 (869)
.+.+++|++|++++|. ++.++ .+..+++|++|++++|..+..++ .+..+++|++|+++++.
T Consensus 106 -~~~l~~L~~L~l~~n~-i~~~~---~~~~l~~L~~L~l~~n~~~~~~~--------------~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 106 -LQNLTNLRELYLNEDN-ISDIS---PLANLTKMYSLNLGANHNLSDLS--------------PLSNMTGLNYLTVTESK 166 (347)
T ss_dssp -GTTCTTCSEEECTTSC-CCCCG---GGTTCTTCCEEECTTCTTCCCCG--------------GGTTCTTCCEEECCSSC
T ss_pred -HcCCCcCCEEECcCCc-ccCch---hhccCCceeEEECCCCCCccccc--------------chhhCCCCcEEEecCCC
Confidence 5689999999999995 77664 48899999999999997766554 35668999999999975
Q ss_pred CcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccc
Q 040040 275 QLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLE 354 (869)
Q Consensus 275 ~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~ 354 (869)
+..++.+..+++|++|++++|.+..+.. ...+++|+.|+++++ .+..+.+ +..+++|++|++++| .++
T Consensus 167 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n-~l~ 234 (347)
T 4fmz_A 167 -VKDVTPIANLTDLYSLSLNYNQIEDISP------LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKIGNN-KIT 234 (347)
T ss_dssp -CCCCGGGGGCTTCSEEECTTSCCCCCGG------GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCC
T ss_pred -cCCchhhccCCCCCEEEccCCccccccc------ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEccCC-ccC
Confidence 5556667889999999999998665432 456899999999986 4555422 678999999999997 455
Q ss_pred ccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcc
Q 040040 355 GIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNE 434 (869)
Q Consensus 355 ~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~ 434 (869)
.+.. ...+++|+.|+++++. ++.++ ....+++|+.|++++| .++.++. .
T Consensus 235 ~~~~----------~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~-----------------~ 283 (347)
T 4fmz_A 235 DLSP----------LANLSQLTWLEIGTNQ-ISDIN--AVKDLTKLKMLNVGSN-QISDISV-----------------L 283 (347)
T ss_dssp CCGG----------GTTCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCCCGG-----------------G
T ss_pred CCcc----------hhcCCCCCEEECCCCc-cCCCh--hHhcCCCcCEEEccCC-ccCCChh-----------------h
Confidence 4421 4477899999998875 55542 2334666777777664 3332221 0
Q ss_pred cccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccC
Q 040040 435 KSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACG 475 (869)
Q Consensus 435 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 475 (869)
..+++|+.|++++|. +... +...+..+++|++|++++|.
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQ-LGNE-DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGCTTCSEEECCSSC-CCGG-GHHHHHTCTTCSEEECCSSS
T ss_pred cCCCCCCEEECcCCc-CCCc-ChhHhhccccCCEEEccCCc
Confidence 224566666666654 2222 33344556666666666643
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=9.1e-20 Score=205.32 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=116.9
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
++|++|+++++ .++.++... +..+++|++|+++++.-...++... ...+++|++|++++|. ++.+++ ..++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~----~~~l~~L~~L~L~~n~~~~~i~~~~--~~~l~~L~~L~Ls~n~-l~~~~~-~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS----FSRLQDLQFLKVEQQTPGLVIRNNT--FRGLSSLIILKLDYNQ-FLQLET-GAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT----TSSCTTCCEEECCCCSTTCEECTTT--TTTCTTCCEEECTTCT-TCEECT-TTTT
T ss_pred CccCEEEecCC-ccCcCChhH----hccCccccEEECcCCcccceECccc--ccccccCCEEeCCCCc-cCccCh-hhcc
Confidence 78999999998 666663322 3689999999999984323444333 4579999999999995 666644 4789
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEecccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~i 301 (869)
++++|++|++++|..-..++.. ..+..+++|++|+++++.--...+. +..+++|++|++++|.+..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSG-----------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHS-----------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CcccCCEEeCCCCCCCccccCc-----------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 9999999999998643223311 1145678888888888653222232 45678888888888875544
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChh-------hHhccCCccEEEEecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTS-------LVRSFVQLQHLEIRKC 350 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-------~~~~L~~L~~L~l~~c 350 (869)
....+.. ....+|+.|+++++. +..+.+.. .+..+++|++|+++++
T Consensus 170 ~~~~l~~--l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 170 CEEDLLN--FQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp CTTTSGG--GTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred Chhhhhc--cccccccccccccCc-ccccchhhccccccccccccceeeeEecCCC
Confidence 3322221 012567777777653 33331110 0123456666666665
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=6.7e-19 Score=199.37 Aligned_cols=317 Identities=17% Similarity=0.200 Sum_probs=194.4
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
+.++..+. +++.+|.. ..+.+++|+++++ +++.++... ...+++|++|+++++ .++.+++ ..+++++
T Consensus 14 ~~v~c~~~-~l~~ip~~-------~~~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~ 80 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEG-------IPTETRLLDLGKN-RIKTLNQDE--FASFPHLEELELNEN-IVSAVEP-GAFNNLF 80 (477)
T ss_dssp TEEECCSC-CCSSCCSC-------CCTTCSEEECCSS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEECT-TTTTTCT
T ss_pred CEEEeCCC-CcCcCCCC-------CCCCCcEEECCCC-ccceECHhH--ccCCCCCCEEECCCC-ccCEeCh-hhhhCCc
Confidence 44555444 56666643 2467888888887 676665433 347888888888887 4666644 4677888
Q ss_pred CCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccc-c-ccccCCCcCEEEeccccccccccC
Q 040040 227 QLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF-C-SVVAFPNLETLKLSAINSETIWHN 304 (869)
Q Consensus 227 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~l~~L~~L~L~~~~l~~i~~~ 304 (869)
+|++|+++++. +..++. ..+..+++|++|+++++. +..+ + .+..+++|++|++++|.+..+...
T Consensus 81 ~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 81 NLRTLGLRSNR-LKLIPL------------GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp TCCEEECCSSC-CCSCCT------------TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCCEEECCCCc-CCccCc------------ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChh
Confidence 88888888764 555552 123446777777776654 2222 1 234566677777766665444332
Q ss_pred CCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 305 QLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
.+ ..+++|++|++++| .++.+ +...+..+++|+.|+++++ .+..
T Consensus 147 ~~----~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~----------------------------- 190 (477)
T 2id5_A 147 AF----SGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINA----------------------------- 190 (477)
T ss_dssp SS----TTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCE-----------------------------
T ss_pred hc----cCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcE-----------------------------
Confidence 22 23666666666664 34443 4444566666666666664 2332
Q ss_pred cccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcC
Q 040040 385 KLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFL 464 (869)
Q Consensus 385 ~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 464 (869)
++......+++|+.|++.+|+.+..++... ....+|++|++++|. +.. +|...+..++
T Consensus 191 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------~~~~~L~~L~l~~n~-l~~-~~~~~~~~l~ 248 (477)
T 2id5_A 191 ----IRDYSFKRLYRLKVLEISHWPYLDTMTPNC----------------LYGLNLTSLSITHCN-LTA-VPYLAVRHLV 248 (477)
T ss_dssp ----ECTTCSCSCTTCCEEEEECCTTCCEECTTT----------------TTTCCCSEEEEESSC-CCS-CCHHHHTTCT
T ss_pred ----eChhhcccCcccceeeCCCCccccccCccc----------------ccCccccEEECcCCc-ccc-cCHHHhcCcc
Confidence 222223335555666666655554444321 112478888888875 443 4766778899
Q ss_pred CccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccCc
Q 040040 465 KLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPT 544 (869)
Q Consensus 465 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~ 544 (869)
+|++|+++++ .+..++. ... ..+++|++|+++++ .++.+ .|..+..+++|++|+++++ .++.+.+.
T Consensus 249 ~L~~L~Ls~n-~l~~~~~------~~~--~~l~~L~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 314 (477)
T 2id5_A 249 YLRFLNLSYN-PISTIEG------SML--HELLRLQEIQLVGG-QLAVV---EPYAFRGLNYLRVLNVSGN-QLTTLEES 314 (477)
T ss_dssp TCCEEECCSS-CCCEECT------TSC--TTCTTCCEEECCSS-CCSEE---CTTTBTTCTTCCEEECCSS-CCSCCCGG
T ss_pred ccCeeECCCC-cCCccCh------hhc--cccccCCEEECCCC-ccceE---CHHHhcCcccCCEEECCCC-cCceeCHh
Confidence 9999999984 4555432 111 46788999999885 45555 4677888999999999984 67776222
Q ss_pred cEEEEEeccCCCCCcceeeccccceEeecCCCC
Q 040040 545 SVEIVANDVRGNDAATKFIFPSLTFLKLRDLPY 577 (869)
Q Consensus 545 s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 577 (869)
.+ ..+++|+.|++++++.
T Consensus 315 ~~---------------~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 315 VF---------------HSVGNLETLILDSNPL 332 (477)
T ss_dssp GB---------------SCGGGCCEEECCSSCE
T ss_pred Hc---------------CCCcccCEEEccCCCc
Confidence 11 1357888888887653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=7.5e-19 Score=193.28 Aligned_cols=306 Identities=15% Similarity=0.133 Sum_probs=167.7
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.++++++|++.++ .++.++... +..+++|++|+++++ .++.++... .+.+++|++|++++|. ++.+++ ..
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFNA-IRYLPP-HV 112 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHH----HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSC-CCCCCT-TT
T ss_pred ccCCceEEEecCC-chhhCChhH----hcccccCcEEECCCC-cccccChhh--ccCCCCcCEEECCCCC-CCcCCH-HH
Confidence 4577888888776 566666432 245677888888776 565555432 3467777777777774 666654 35
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEecccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSE 299 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~ 299 (869)
++++++|++|+++++. +..++.. .+..+++|++|+++++. +..++. +..+++|++|++++|.+.
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~------------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRG------------IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred hcCCCCCCEEECCCCc-cCcCCHH------------HhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC
Confidence 6777777777777754 4444411 12345566666665543 222221 334455555555555433
Q ss_pred ccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceee
Q 040040 300 TIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLK 379 (869)
Q Consensus 300 ~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~ 379 (869)
.+. .+.+++|+.|+++++ .++.+ . ..++|+.|+
T Consensus 179 ~~~-------~~~l~~L~~L~l~~n-~l~~~------~---------------------------------~~~~L~~L~ 211 (390)
T 3o6n_A 179 HVD-------LSLIPSLFHANVSYN-LLSTL------A---------------------------------IPIAVEELD 211 (390)
T ss_dssp BCC-------GGGCTTCSEEECCSS-CCSEE------E---------------------------------CCSSCSEEE
T ss_pred ccc-------cccccccceeecccc-ccccc------C---------------------------------CCCcceEEE
Confidence 221 122344444444442 22221 1 223444444
Q ss_pred cccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhH
Q 040040 380 MKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNM 459 (869)
Q Consensus 380 l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 459 (869)
++++. +..++.. .+++|+.|++.++. ++..+. ...+++|++|++++|. +... +...
T Consensus 212 l~~n~-l~~~~~~---~~~~L~~L~l~~n~-l~~~~~-----------------l~~l~~L~~L~Ls~n~-l~~~-~~~~ 267 (390)
T 3o6n_A 212 ASHNS-INVVRGP---VNVELTILKLQHNN-LTDTAW-----------------LLNYPGLVEVDLSYNE-LEKI-MYHP 267 (390)
T ss_dssp CCSSC-CCEEECC---CCSSCCEEECCSSC-CCCCGG-----------------GGGCTTCSEEECCSSC-CCEE-ESGG
T ss_pred CCCCe-eeecccc---ccccccEEECCCCC-CcccHH-----------------HcCCCCccEEECCCCc-CCCc-ChhH
Confidence 44433 3333221 12344444444431 111110 1225677777777764 4333 2334
Q ss_pred HhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcc
Q 040040 460 FARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLK 539 (869)
Q Consensus 460 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~ 539 (869)
+..+++|++|++++ +.+..++... ..+++|++|+++++ .++.+ |..+..+++|++|++++| .+.
T Consensus 268 ~~~l~~L~~L~L~~-n~l~~~~~~~---------~~l~~L~~L~L~~n-~l~~~----~~~~~~l~~L~~L~L~~N-~i~ 331 (390)
T 3o6n_A 268 FVKMQRLERLYISN-NRLVALNLYG---------QPIPTLKVLDLSHN-HLLHV----ERNQPQFDRLENLYLDHN-SIV 331 (390)
T ss_dssp GTTCSSCCEEECCS-SCCCEEECSS---------SCCTTCCEEECCSS-CCCCC----GGGHHHHTTCSEEECCSS-CCC
T ss_pred ccccccCCEEECCC-CcCcccCccc---------CCCCCCCEEECCCC-cceec----CccccccCcCCEEECCCC-ccc
Confidence 56778888888887 4455543211 35778888888886 56555 566777888888888874 455
Q ss_pred cccCccEEEEEeccCCCCCcceeeccccceEeecCCC
Q 040040 540 SIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLP 576 (869)
Q Consensus 540 ~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 576 (869)
.+ |. ..+++|+.|++++++
T Consensus 332 ~~-~~-----------------~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 332 TL-KL-----------------STHHTLKNLTLSHND 350 (390)
T ss_dssp CC-CC-----------------CTTCCCSEEECCSSC
T ss_pred ee-Cc-----------------hhhccCCEEEcCCCC
Confidence 54 32 125777777777765
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=1.9e-18 Score=195.61 Aligned_cols=225 Identities=20% Similarity=0.232 Sum_probs=163.7
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.+++++|+++++ .++.++... +..+++|++|+++++ .++.+.... .+.+++|++|+++++ +++.+++ ..+
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDE----FASFPHLEELELNEN-IVSAVEPGA--FNNLFNLRTLGLRSN-RLKLIPL-GVF 100 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTT----TTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCCSCCT-TSS
T ss_pred CCCCcEEECCCC-ccceECHhH----ccCCCCCCEEECCCC-ccCEeChhh--hhCCccCCEEECCCC-cCCccCc-ccc
Confidence 468999999998 677775432 368999999999998 677764433 458999999999998 4888765 467
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~~ 300 (869)
+++++|++|+++++. +..++. ..+..+++|++|+++++. +..+. .+..+++|++|++++|.+..
T Consensus 101 ~~l~~L~~L~Ls~n~-i~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 101 TGLSNLTKLDISENK-IVILLD------------YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp TTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred cCCCCCCEEECCCCc-cccCCh------------hHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc
Confidence 899999999999876 444431 345668999999998864 44332 35678999999999998665
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+... .+..+++|+.|+++++ .+..+ +...+..+++|++|++++|..+..++.. .....+|++|++
T Consensus 167 ~~~~----~l~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------~~~~~~L~~L~l 231 (477)
T 2id5_A 167 IPTE----ALSHLHGLIVLRLRHL-NINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPN---------CLYGLNLTSLSI 231 (477)
T ss_dssp CCHH----HHTTCTTCCEEEEESC-CCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTT---------TTTTCCCSEEEE
T ss_pred cChh----HhcccCCCcEEeCCCC-cCcEe-ChhhcccCcccceeeCCCCccccccCcc---------cccCccccEEEC
Confidence 4322 2445899999999986 45555 4455788999999999998776665432 223457888888
Q ss_pred ccCccccccCCCcccCCCCccEEEEcc
Q 040040 381 KDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 381 ~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
+++. ++.++......+++|+.|++++
T Consensus 232 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 232 THCN-LTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp ESSC-CCSCCHHHHTTCTTCCEEECCS
T ss_pred cCCc-ccccCHHHhcCccccCeeECCC
Confidence 8774 6655544344455666666654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=9.2e-19 Score=192.56 Aligned_cols=307 Identities=19% Similarity=0.143 Sum_probs=161.7
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEecccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~~i 301 (869)
.+++++.|+++++. ++.+|.. .+..+++|++|+++++. +..++ .+..+++|++|++++|.+..+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~------------~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAA------------LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTH------------HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCceEEEecCCc-hhhCChh------------HhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcC
Confidence 46788888887754 5666621 13446777777777653 33332 245566777777777765443
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMK 381 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 381 (869)
.. ..++.+++|++|+++++ .++.+ |...+..+++|++|+++++ .++.+... ....+++|+.|+++
T Consensus 109 ~~----~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 109 PP----HVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNN-NLERIEDD--------TFQATTSLQNLQLS 173 (390)
T ss_dssp CT----TTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT--------TTSSCTTCCEEECC
T ss_pred CH----HHhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCC-ccCccChh--------hccCCCCCCEEECC
Confidence 22 22334666777777664 44444 4344556667777777664 34333221 13345666666666
Q ss_pred cCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHh
Q 040040 382 DLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFA 461 (869)
Q Consensus 382 ~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 461 (869)
++. ++.++. ..+++ |+.|+++++. +.. +.
T Consensus 174 ~n~-l~~~~~---~~l~~----------------------------------------L~~L~l~~n~-l~~------~~ 202 (390)
T 3o6n_A 174 SNR-LTHVDL---SLIPS----------------------------------------LFHANVSYNL-LST------LA 202 (390)
T ss_dssp SSC-CSBCCG---GGCTT----------------------------------------CSEEECCSSC-CSE------EE
T ss_pred CCc-CCcccc---ccccc----------------------------------------cceeeccccc-ccc------cC
Confidence 554 333321 12444 4444444432 111 11
Q ss_pred hcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccc
Q 040040 462 RFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSI 541 (869)
Q Consensus 462 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l 541 (869)
..++|++|++++ +.+..++. ..+++|+.|+++++ .++.+ ..+..+++|++|+++++ .+..+
T Consensus 203 ~~~~L~~L~l~~-n~l~~~~~-----------~~~~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~Ls~n-~l~~~ 263 (390)
T 3o6n_A 203 IPIAVEELDASH-NSINVVRG-----------PVNVELTILKLQHN-NLTDT-----AWLLNYPGLVEVDLSYN-ELEKI 263 (390)
T ss_dssp CCSSCSEEECCS-SCCCEEEC-----------CCCSSCCEEECCSS-CCCCC-----GGGGGCTTCSEEECCSS-CCCEE
T ss_pred CCCcceEEECCC-Ceeeeccc-----------cccccccEEECCCC-CCccc-----HHHcCCCCccEEECCCC-cCCCc
Confidence 223455555555 23333321 13445555555553 23222 34555566666666553 34433
Q ss_pred cCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecce
Q 040040 542 FPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQ 620 (869)
Q Consensus 542 ~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~ 620 (869)
.|..+ ..+++|++|+++++. ++.++.... .+++|++|++++ ++..++....
T Consensus 264 ~~~~~---------------~~l~~L~~L~L~~n~-l~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~---------- 315 (390)
T 3o6n_A 264 MYHPF---------------VKMQRLERLYISNNR-LVALNLYGQ--PIPTLKVLDLSHNHLLHVERNQP---------- 315 (390)
T ss_dssp ESGGG---------------TTCSSCCEEECCSSC-CCEEECSSS--CCTTCCEEECCSSCCCCCGGGHH----------
T ss_pred ChhHc---------------cccccCCEEECCCCc-CcccCcccC--CCCCCCEEECCCCcceecCcccc----------
Confidence 23222 124556666665542 333333322 236677777766 6655544221
Q ss_pred eccccceeeeecccceeeeccccccceEEEeecCCCc
Q 040040 621 VFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSD 657 (869)
Q Consensus 621 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~ 657 (869)
.+++|++|++++|.+..+....+++|+.|++.+|...
T Consensus 316 ~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp HHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred ccCcCCEEECCCCccceeCchhhccCCEEEcCCCCcc
Confidence 2578888888888877776666788888888555433
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=6e-18 Score=196.60 Aligned_cols=306 Identities=18% Similarity=0.132 Sum_probs=166.8
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEecccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~~i 301 (869)
.+.+++.++++++. +..+|.. .+..+++|++|+++++. +..++ .+..+++|++|+|++|.+..+
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~------------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 114 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAA------------LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYL 114 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTH------------HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCceEEEeeCCC-CCCcCHH------------HHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCC
Confidence 36777777777754 5555521 12346677777776643 33333 244566666666666654443
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMK 381 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 381 (869)
. |..++.+++|++|++++| .++.+ |...++.+++|++|+++++ .+..++.. ....+++|+.|+++
T Consensus 115 ~----~~~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--------~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 115 P----PHVFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNN-NLERIEDD--------TFQATTSLQNLQLS 179 (597)
T ss_dssp C----TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT--------TTTTCTTCCEEECT
T ss_pred C----HHHHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCC-cCCCCChh--------hhhcCCcCcEEECc
Confidence 2 222334666666666664 34443 3344455666666666664 33333221 13345555555555
Q ss_pred cCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHh
Q 040040 382 DLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFA 461 (869)
Q Consensus 382 ~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 461 (869)
++. ++.++. +.+++|+.|+++++. +.. +.
T Consensus 180 ~N~-l~~~~~-------------------------------------------~~l~~L~~L~l~~n~-l~~------l~ 208 (597)
T 3oja_B 180 SNR-LTHVDL-------------------------------------------SLIPSLFHANVSYNL-LST------LA 208 (597)
T ss_dssp TSC-CSBCCG-------------------------------------------GGCTTCSEEECCSSC-CSE------EE
T ss_pred CCC-CCCcCh-------------------------------------------hhhhhhhhhhcccCc-ccc------cc
Confidence 543 333221 124555555555442 221 11
Q ss_pred hcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccc
Q 040040 462 RFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSI 541 (869)
Q Consensus 462 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l 541 (869)
..++|++|+++++ .+..++. ..+++|+.|+++++. ++. +..+..+++|++|++++| .+..+
T Consensus 209 ~~~~L~~L~ls~n-~l~~~~~-----------~~~~~L~~L~L~~n~-l~~-----~~~l~~l~~L~~L~Ls~N-~l~~~ 269 (597)
T 3oja_B 209 IPIAVEELDASHN-SINVVRG-----------PVNVELTILKLQHNN-LTD-----TAWLLNYPGLVEVDLSYN-ELEKI 269 (597)
T ss_dssp CCTTCSEEECCSS-CCCEEEC-----------SCCSCCCEEECCSSC-CCC-----CGGGGGCTTCSEEECCSS-CCCEE
T ss_pred CCchhheeeccCC-ccccccc-----------ccCCCCCEEECCCCC-CCC-----ChhhccCCCCCEEECCCC-ccCCC
Confidence 2345666666663 3333322 234566666666642 332 245666677777777663 45444
Q ss_pred cCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecce
Q 040040 542 FPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQ 620 (869)
Q Consensus 542 ~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~ 620 (869)
.|.++ ..+++|+.|+++++. +..++..... +++|+.|++++ .+..++....
T Consensus 270 ~~~~~---------------~~l~~L~~L~Ls~N~-l~~l~~~~~~--l~~L~~L~Ls~N~l~~i~~~~~---------- 321 (597)
T 3oja_B 270 MYHPF---------------VKMQRLERLYISNNR-LVALNLYGQP--IPTLKVLDLSHNHLLHVERNQP---------- 321 (597)
T ss_dssp ESGGG---------------TTCSSCCEEECTTSC-CCEEECSSSC--CTTCCEEECCSSCCCCCGGGHH----------
T ss_pred CHHHh---------------cCccCCCEEECCCCC-CCCCCccccc--CCCCcEEECCCCCCCccCcccc----------
Confidence 34332 125667777776653 3444443322 37777777777 6666654321
Q ss_pred eccccceeeeecccceeeeccccccceEEEeecCCC
Q 040040 621 VFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGS 656 (869)
Q Consensus 621 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 656 (869)
.+++|++|++++|.+..+....+++|+.|++++|..
T Consensus 322 ~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred cCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 368888888888888877766788888888855543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=9.3e-18 Score=194.95 Aligned_cols=306 Identities=14% Similarity=0.144 Sum_probs=160.5
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.+.+++.|++.++ .+..+|... +..+++|++|+++++ .++.++... .+.+++|++|++++|. ++.+++ ..
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAAL----LDSFRQVELLNLNDL-QIEEIDTYA--FAYAHTIQKLYMGFNA-IRYLPP-HV 118 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHH----HHHCCCCSEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSC-CCCCCT-TT
T ss_pred cCCCceEEEeeCC-CCCCcCHHH----HccCCCCcEEECCCC-CCCCCChHH--hcCCCCCCEEECCCCc-CCCCCH-HH
Confidence 3456666666665 455555432 234566666666665 455544322 3356666666666663 555544 34
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEecccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSE 299 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~ 299 (869)
++++++|++|++++|. +..+|.. .+..+++|++|+++++. +..++ .+..+++|++|++++|.+.
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRG------------IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHH------------HhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC
Confidence 5666666666666653 3444410 11334555555555432 22221 1233444444444444432
Q ss_pred ccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceee
Q 040040 300 TIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLK 379 (869)
Q Consensus 300 ~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~ 379 (869)
.+ + ++.+++|+.|+++++ .+..+ ...++|+.|+
T Consensus 185 -----------------------------~~-~---~~~l~~L~~L~l~~n-~l~~l-------------~~~~~L~~L~ 217 (597)
T 3oja_B 185 -----------------------------HV-D---LSLIPSLFHANVSYN-LLSTL-------------AIPIAVEELD 217 (597)
T ss_dssp -----------------------------BC-C---GGGCTTCSEEECCSS-CCSEE-------------ECCTTCSEEE
T ss_pred -----------------------------Cc-C---hhhhhhhhhhhcccC-ccccc-------------cCCchhheee
Confidence 22 1 233444444444442 22211 1223444555
Q ss_pred cccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhH
Q 040040 380 MKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNM 459 (869)
Q Consensus 380 l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 459 (869)
++++. +..++... .++|+.|++.+|. ++..+ ....+++|+.|++++|. +....| ..
T Consensus 218 ls~n~-l~~~~~~~---~~~L~~L~L~~n~-l~~~~-----------------~l~~l~~L~~L~Ls~N~-l~~~~~-~~ 273 (597)
T 3oja_B 218 ASHNS-INVVRGPV---NVELTILKLQHNN-LTDTA-----------------WLLNYPGLVEVDLSYNE-LEKIMY-HP 273 (597)
T ss_dssp CCSSC-CCEEECSC---CSCCCEEECCSSC-CCCCG-----------------GGGGCTTCSEEECCSSC-CCEEES-GG
T ss_pred ccCCc-cccccccc---CCCCCEEECCCCC-CCCCh-----------------hhccCCCCCEEECCCCc-cCCCCH-HH
Confidence 44443 33332211 2345555554432 11111 01225777888887765 443333 34
Q ss_pred HhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcc
Q 040040 460 FARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLK 539 (869)
Q Consensus 460 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~ 539 (869)
+..+++|++|++++ +.+..++... ..+++|+.|+++++ .+..+ |..+..+++|++|++++| .+.
T Consensus 274 ~~~l~~L~~L~Ls~-N~l~~l~~~~---------~~l~~L~~L~Ls~N-~l~~i----~~~~~~l~~L~~L~L~~N-~l~ 337 (597)
T 3oja_B 274 FVKMQRLERLYISN-NRLVALNLYG---------QPIPTLKVLDLSHN-HLLHV----ERNQPQFDRLENLYLDHN-SIV 337 (597)
T ss_dssp GTTCSSCCEEECTT-SCCCEEECSS---------SCCTTCCEEECCSS-CCCCC----GGGHHHHTTCSEEECCSS-CCC
T ss_pred hcCccCCCEEECCC-CCCCCCCccc---------ccCCCCcEEECCCC-CCCcc----CcccccCCCCCEEECCCC-CCC
Confidence 56788888888888 4455554311 25778888888886 45555 667778888888888874 455
Q ss_pred cccCccEEEEEeccCCCCCcceeeccccceEeecCCC
Q 040040 540 SIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLP 576 (869)
Q Consensus 540 ~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 576 (869)
.+ |. ..+++|+.|++++++
T Consensus 338 ~~-~~-----------------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 338 TL-KL-----------------STHHTLKNLTLSHND 356 (597)
T ss_dssp CC-CC-----------------CTTCCCSEEECCSSC
T ss_pred Cc-Ch-----------------hhcCCCCEEEeeCCC
Confidence 54 32 226778888887765
No 41
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.1e-19 Score=212.07 Aligned_cols=162 Identities=15% Similarity=0.264 Sum_probs=93.8
Q ss_pred CCCCCccEeecccccccccccccc------------ccccccCCCCEEEecCCCCCcccCChhhh-cCCCCCcEEEEeec
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQ------------LRAESFLRLRNLKVESCEKLTHIFSFSIS-RGLPQLQTIKVTAC 236 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~------------~~~~~l~~L~~L~L~~c~~l~~l~~~~~~-~~L~~L~~L~l~~c 236 (869)
..|++|++|++.+++.+.++...+ .....+++|++|++++|. +..... ..+ ..+++|++|++++|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-ELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-HHHHHHCTTCCEEEEESC
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-HHHHHhCCCCcEEeCCCc
Confidence 468899999999987665432110 001357888888888885 544322 233 36888888888887
Q ss_pred CCcee--eeccccccccCCccccccccCCcccEEeccCCCCccc-----ccc-cccCCCcCEEEeccccccccccCCCCC
Q 040040 237 KNMKV--IFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS-----FCS-VVAFPNLETLKLSAINSETIWHNQLPA 308 (869)
Q Consensus 237 ~~l~~--l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~ 308 (869)
..+.. ++ .-...+++|++|++++|. +.. ++. ...+++|++|++++|. ..+....++.
T Consensus 141 ~~~~~~~l~-------------~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~ 205 (594)
T 2p1m_B 141 EGFSTDGLA-------------AIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALER 205 (594)
T ss_dssp EEEEHHHHH-------------HHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHH
T ss_pred CCCCHHHHH-------------HHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHH
Confidence 54433 11 112247778888887765 221 111 1245677777777664 1111122233
Q ss_pred cccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 309 MSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 309 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
....+++|++|++++|..++.+ ...+..+++|++|++..|
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEECSBC
T ss_pred HHHhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEcccccc
Confidence 3334567777777776555553 234566677777776654
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=8.2e-19 Score=204.68 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=116.2
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcC-CCC-CcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRG-LPQ-LQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~-L~~-L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
.+++|++|++++|. ++.... ..+.. +++ |++|++++|..+.... .. .-...+++|++|++++|.
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~-~~l~~~~~~~L~~L~L~~~~~~~~~~---l~--------~~~~~~~~L~~L~L~~~~- 175 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDL-DRLAKARADDLETLKLDKCSGFTTDG---LL--------SIVTHCRKIKTLLMEESS- 175 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHH-HHHHHHHGGGCCEEEEESCEEEEHHH---HH--------HHHHHCTTCSEEECTTCE-
T ss_pred hCCCCCeEEeeccE-ecHHHH-HHHHHhccccCcEEECcCCCCcCHHH---HH--------HHHhhCCCCCEEECcccc-
Confidence 45666666666662 332211 12222 233 6666666664211100 00 011235666666666653
Q ss_pred ccc-----cc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEec
Q 040040 276 LRS-----FC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRK 349 (869)
Q Consensus 276 l~~-----~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 349 (869)
+.. ++ ....+++|++|+++++.+..+....++.....+++|++|++++|. +..+ + ..+..+++|++|+++.
T Consensus 176 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGS 252 (592)
T ss_dssp EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECB
T ss_pred ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccc
Confidence 111 11 123467888888887775533333455555667888888888864 3443 3 5577888888888876
Q ss_pred cccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeee
Q 040040 350 CMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQ 429 (869)
Q Consensus 350 c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 429 (869)
+........ .......+++|+.|.+.++. ...++. ....+++|++|++.+|. +.......
T Consensus 253 ~~~~~~~~~------~~~~l~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~----------- 312 (592)
T 3ogk_B 253 LNEDIGMPE------KYMNLVFPRKLCRLGLSYMG-PNEMPI-LFPFAAQIRKLDLLYAL-LETEDHCT----------- 312 (592)
T ss_dssp CCCCTTCTT------SSSCCCCCTTCCEEEETTCC-TTTGGG-GGGGGGGCCEEEETTCC-CCHHHHHH-----------
T ss_pred cccccchHH------HHHHhhccccccccCccccc-hhHHHH-HHhhcCCCcEEecCCCc-CCHHHHHH-----------
Confidence 332211000 00124456677777776542 222221 12235566666666655 32211000
Q ss_pred ccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcc
Q 040040 430 SFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGA 473 (869)
Q Consensus 430 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 473 (869)
....+++|++|++.++ +.+.........+++|++|++++
T Consensus 313 ---~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 313 ---LIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp ---HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ---HHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeec
Confidence 0012466666666632 22111223344566667776664
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=4.3e-17 Score=174.84 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=103.2
Q ss_pred CCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcc-ccChhhHhccCCccEEEEecccccccccccccccc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKF-LFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIE 364 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~ 364 (869)
++|++|++++|.+..+... .+..+++|++|+++++. ++. -.....+..+ +|++|+++++ .++.++.
T Consensus 123 ~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~------ 189 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK------ 189 (332)
T ss_dssp TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS------
T ss_pred ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCC-CCCccCc------
Confidence 4566666665554433221 12335666666666543 221 0112223344 6666666664 3444322
Q ss_pred ccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEE
Q 040040 365 EERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLME 444 (869)
Q Consensus 365 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 444 (869)
..+++|++|+++++. ++.++......+++|+.|++.++ .++.++... ...+++|+.|+
T Consensus 190 -----~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~---------------~~~l~~L~~L~ 247 (332)
T 2ft3_A 190 -----DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGS---------------LSFLPTLRELH 247 (332)
T ss_dssp -----SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTG---------------GGGCTTCCEEE
T ss_pred -----cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhH---------------hhCCCCCCEEE
Confidence 133567777776654 55555444445666666666553 233222110 12256777777
Q ss_pred EeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccc-cccccCCCCccc
Q 040040 445 VIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLT-KIWNKDPRGKLI 523 (869)
Q Consensus 445 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~l~~~~p~~~~~ 523 (869)
+++|. +.. +|.+ +..+++|++|++++ +.++.++..... ........++|+.|++.+++... .+ .|..+..
T Consensus 248 L~~N~-l~~-lp~~-l~~l~~L~~L~l~~-N~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~ 318 (332)
T 2ft3_A 248 LDNNK-LSR-VPAG-LPDLKLLQVVYLHT-NNITKVGVNDFC--PVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRC 318 (332)
T ss_dssp CCSSC-CCB-CCTT-GGGCTTCCEEECCS-SCCCBCCTTSSS--CSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTT
T ss_pred CCCCc-Cee-cChh-hhcCccCCEEECCC-CCCCccChhHcc--ccccccccccccceEeecCccccccc---Ccccccc
Confidence 77764 432 4554 56778888888887 445554321100 00000124567777777765321 11 2455666
Q ss_pred CCCccEEEEecC
Q 040040 524 FPNLVLVRIFEC 535 (869)
Q Consensus 524 l~~L~~L~l~~c 535 (869)
+++|+.++++++
T Consensus 319 l~~L~~l~l~~n 330 (332)
T 2ft3_A 319 VTDRLAIQFGNY 330 (332)
T ss_dssp BCCSTTEEC---
T ss_pred cchhhhhhcccc
Confidence 777777777664
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.3e-18 Score=203.21 Aligned_cols=239 Identities=17% Similarity=0.208 Sum_probs=143.8
Q ss_pred CCCCCccEEEEecCCCceecCCCC-CC---------CCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCC
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDST-EL---------VPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESC 210 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~-~~---------~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c 210 (869)
..+++|++|++.++..+..+.-.. .+ .....+++|++|+++++. +.......+ ...+++|++|++.+|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l-~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELI-AKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHH-HHHCTTCCEEEEESC
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHH-HHhCCCCcEEeCCCc
Confidence 467999999999986554332110 00 001357899999999983 443222211 125899999999999
Q ss_pred CCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCC-Ccc--cccc-cccCC
Q 040040 211 EKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLP-QLR--SFCS-VVAFP 286 (869)
Q Consensus 211 ~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~--~~~~-~~~l~ 286 (869)
..++.......+.++++|++|++++|. +......... .-...+++|++|+++++. .+. .+.. ...++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~--------~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS--------HFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG--------GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH--------HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence 766552111245689999999999986 3322111000 112357899999999986 121 1111 23479
Q ss_pred CcCEEEecccc-ccccccCCCCCcccccCCceEEEEecCCC------CccccChhhHhccCCccEEE-Eecccccccccc
Q 040040 287 NLETLKLSAIN-SETIWHNQLPAMSSCIQNLTRLIVHGCNN------LKFLFSTSLVRSFVQLQHLE-IRKCMDLEGIVF 358 (869)
Q Consensus 287 ~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~l~~c~~------l~~l~~~~~~~~L~~L~~L~-l~~c~~l~~i~~ 358 (869)
+|++|++++|. +.. ++..+..+++|++|.+.+|.. +..+ + ..+.++++|+.|. +.+.. ...+..
T Consensus 212 ~L~~L~L~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~-~~l~~~~~L~~Ls~~~~~~-~~~l~~ 283 (594)
T 2p1m_B 212 NLKSLKLNRAVPLEK-----LATLLQRAPQLEELGTGGYTAEVRPDVYSGL-S-VALSGCKELRCLSGFWDAV-PAYLPA 283 (594)
T ss_dssp TCCEEECCTTSCHHH-----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-H-HHHHTCTTCCEEECCBTCC-GGGGGG
T ss_pred CCcEEecCCCCcHHH-----HHHHHhcCCcceEcccccccCccchhhHHHH-H-HHHhcCCCcccccCCcccc-hhhHHH
Confidence 99999999984 222 555566789999999887643 1222 1 2356778888873 32211 011100
Q ss_pred ccccccccccccccCccceeecccCccccccCCC-cccCCCCccEEEEccC
Q 040040 359 PEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSG-NCIELPSLKQLRMAKC 408 (869)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~~l~~L~~L~l~~c 408 (869)
....+++|++|++++|. +..-... ....+++|+.|.+.+|
T Consensus 284 ---------~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 284 ---------VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp ---------GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred ---------HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 12256888888888876 4432111 1224677777777766
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=3e-16 Score=168.08 Aligned_cols=297 Identities=12% Similarity=0.086 Sum_probs=140.1
Q ss_pred CccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcC
Q 040040 145 SLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRG 224 (869)
Q Consensus 145 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 224 (869)
++++++++++ .++.+|.. ..+.+++|+++++ +++.++... .+.+++|++|++++|. ++.+.+ ..+++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~-------~~~~l~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD-------LPPDTALLDLQNN-KITEIKDGD--FKNLKNLHTLILINNK-ISKISP-GAFAP 98 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS-------CCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSC-CCCBCT-TTTTT
T ss_pred CCeEEEecCC-CccccCcc-------CCCCCeEEECCCC-cCCEeChhh--hccCCCCCEEECCCCc-CCeeCH-HHhcC
Confidence 5566655554 44444432 2345666666655 454444322 2355666666666552 444432 24555
Q ss_pred CCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccC
Q 040040 225 LPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHN 304 (869)
Q Consensus 225 L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~ 304 (869)
+++|++|+++++. +..+| .. ..++|++|++++|.+..+...
T Consensus 99 l~~L~~L~Ls~n~-l~~l~-------------------------------------~~-~~~~L~~L~l~~n~l~~~~~~ 139 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELP-------------------------------------EK-MPKTLQELRVHENEITKVRKS 139 (330)
T ss_dssp CTTCCEEECCSSC-CSBCC-------------------------------------SS-CCTTCCEEECCSSCCCBBCHH
T ss_pred CCCCCEEECCCCc-CCccC-------------------------------------hh-hcccccEEECCCCcccccCHh
Confidence 5566666655543 33333 11 114555555555543332111
Q ss_pred CCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 305 QLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
.+..+++|++|+++++..-..-.....+..+++|++|+++++ .++.++. ..+++|++|+++++.
T Consensus 140 ----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~-----------~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 140 ----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-----------GLPPSLTELHLDGNK 203 (330)
T ss_dssp ----HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS-----------SCCTTCSEEECTTSC
T ss_pred ----HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCc-----------cccccCCEEECCCCc
Confidence 122355566666655432110012233455666666666664 3444321 123566666666654
Q ss_pred cccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcC
Q 040040 385 KLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFL 464 (869)
Q Consensus 385 ~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 464 (869)
++.+.......+++|+.|+++++. ++.++... ...+++|++|++++|. +.. +|.+ +..++
T Consensus 204 -l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---------------~~~l~~L~~L~L~~N~-l~~-lp~~-l~~l~ 263 (330)
T 1xku_A 204 -ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS---------------LANTPHLRELHLNNNK-LVK-VPGG-LADHK 263 (330)
T ss_dssp -CCEECTGGGTTCTTCCEEECCSSC-CCEECTTT---------------GGGSTTCCEEECCSSC-CSS-CCTT-TTTCS
T ss_pred -CCccCHHHhcCCCCCCEEECCCCc-CceeChhh---------------ccCCCCCCEEECCCCc-Ccc-CChh-hccCC
Confidence 544443334445666666665532 22222110 1225667777777664 332 3443 45677
Q ss_pred CccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEec
Q 040040 465 KLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFE 534 (869)
Q Consensus 465 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~ 534 (869)
+|++|++++ +.++.++.......... ...++|+.|++.+.+- ... ...|..+..+++++.+++++
T Consensus 264 ~L~~L~l~~-N~i~~~~~~~f~~~~~~--~~~~~l~~l~l~~N~~-~~~-~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 264 YIQVVYLHN-NNISAIGSNDFCPPGYN--TKKASYSGVSLFSNPV-QYW-EIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SCCEEECCS-SCCCCCCTTSSSCSSCC--TTSCCCSEEECCSSSS-CGG-GSCGGGGTTCCCGGGEEC--
T ss_pred CcCEEECCC-CcCCccChhhcCCcccc--cccccccceEeecCcc-ccc-ccCccccccccceeEEEecc
Confidence 777777777 34554432111000000 1235666666666542 211 11244556666666666654
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=1.4e-16 Score=169.82 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=125.5
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
..+++++|+++++ .++.++..+ ..+++|++|+++++ .++.++.. .+.+++|++|++++| .++.+|. .
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l-----~~l~~L~~L~L~~n-~l~~lp~~---~~~l~~L~~L~Ls~n-~l~~lp~--~ 145 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQA-----FRLSHLQHMTIDAA-GLMELPDT---MQQFAGLETLTLARN-PLRALPA--S 145 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCG-----GGGTTCSEEEEESS-CCCCCCSC---GGGGTTCSEEEEESC-CCCCCCG--G
T ss_pred cccceeEEEccCC-CchhcChhh-----hhCCCCCEEECCCC-CccchhHH---HhccCCCCEEECCCC-ccccCcH--H
Confidence 3577888888887 677776554 46888888888887 56666544 567889999999888 4666654 6
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEeccccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l~~ 300 (869)
++++++|++|++++|..+..+|....... ....+..+++|++|+++++ .+..+|. +..+++|++|++++|.+..
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~----~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTD----ASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-----CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhcc----chhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc
Confidence 88889999999998887777662211000 0011223555555555543 2333332 3344555555555554332
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+|..++.+++|++|++++|.....+ | ..++.+++|++|++++|.....++.. ...+++|+.|++
T Consensus 221 -----l~~~l~~l~~L~~L~Ls~n~~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~~p~~---------~~~l~~L~~L~L 284 (328)
T 4fcg_A 221 -----LGPAIHHLPKLEELDLRGCTALRNY-P-PIFGGRAPLKRLILKDCSNLLTLPLD---------IHRLTQLEKLDL 284 (328)
T ss_dssp -----CCGGGGGCTTCCEEECTTCTTCCBC-C-CCTTCCCCCCEEECTTCTTCCBCCTT---------GGGCTTCCEEEC
T ss_pred -----CchhhccCCCCCEEECcCCcchhhh-H-HHhcCCCCCCEEECCCCCchhhcchh---------hhcCCCCCEEeC
Confidence 2222334555555555554444332 2 22344555555555554443333221 334455555555
Q ss_pred ccCccccccCCCcccCCCCccEEEE
Q 040040 381 KDLAKLTRFCSGNCIELPSLKQLRM 405 (869)
Q Consensus 381 ~~~~~L~~l~~~~~~~l~~L~~L~l 405 (869)
++|+.+..+|.. ...+++|+.+.+
T Consensus 285 ~~n~~~~~iP~~-l~~L~~L~~l~l 308 (328)
T 4fcg_A 285 RGCVNLSRLPSL-IAQLPANCIILV 308 (328)
T ss_dssp TTCTTCCCCCGG-GGGSCTTCEEEC
T ss_pred CCCCchhhccHH-HhhccCceEEeC
Confidence 555444444432 223444444443
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=1.7e-16 Score=169.21 Aligned_cols=222 Identities=23% Similarity=0.364 Sum_probs=176.1
Q ss_pred hccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccc
Q 040040 117 LKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRA 196 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~ 196 (869)
.++++.|++++. .+..++..+ ..+++|++|+++++ .+..+|..+ ..+++|++|+++++ .++.++.. .
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l--~~l~~L~~L~L~~n-~l~~lp~~~-----~~l~~L~~L~Ls~n-~l~~lp~~---l 146 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQA--FRLSHLQHMTIDAA-GLMELPDTM-----QQFAGLETLTLARN-PLRALPAS---I 146 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCG--GGGTTCSEEEEESS-CCCCCCSCG-----GGGTTCSEEEEESC-CCCCCCGG---G
T ss_pred ccceeEEEccCC-CchhcChhh--hhCCCCCEEECCCC-CccchhHHH-----hccCCCCEEECCCC-ccccCcHH---H
Confidence 478899999884 455666555 56899999999998 677777654 68999999999998 67777654 6
Q ss_pred cccCCCCEEEecCCCCCcccCChhhh---------cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccE
Q 040040 197 ESFLRLRNLKVESCEKLTHIFSFSIS---------RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRK 267 (869)
Q Consensus 197 ~~l~~L~~L~L~~c~~l~~l~~~~~~---------~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~ 267 (869)
+.+++|++|++++|..+..+|. .+ +++++|++|+++++. +..+| ..+..+++|++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-------------~~l~~l~~L~~ 210 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTG-IRSLP-------------ASIANLQNLKS 210 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC-------------GGGGGCTTCCE
T ss_pred hcCcCCCEEECCCCCCccccCh--hHhhccchhhhccCCCCCEEECcCCC-cCcch-------------HhhcCCCCCCE
Confidence 7899999999999987777765 33 359999999999985 55776 45677999999
Q ss_pred EeccCCCCccccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEE
Q 040040 268 LTLKSLPQLRSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLE 346 (869)
Q Consensus 268 L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~ 346 (869)
|+++++. +..++ .+..+++|++|++++|.+.. .+|..++.+++|++|++++|.....+ |. .+..+++|++|+
T Consensus 211 L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~-p~-~~~~l~~L~~L~ 283 (328)
T 4fcg_A 211 LKIRNSP-LSALGPAIHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDCSNLLTL-PL-DIHRLTQLEKLD 283 (328)
T ss_dssp EEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTCTTCCBC-CT-TGGGCTTCCEEE
T ss_pred EEccCCC-CCcCchhhccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCCCchhhc-ch-hhhcCCCCCEEe
Confidence 9999875 44443 46788999999999998433 24555667999999999999887775 53 378999999999
Q ss_pred EeccccccccccccccccccccccccCccceeecccC
Q 040040 347 IRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDL 383 (869)
Q Consensus 347 l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~ 383 (869)
+++|+.+..++.. +..+++|+.+.+...
T Consensus 284 L~~n~~~~~iP~~---------l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 284 LRGCVNLSRLPSL---------IAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCCCCGG---------GGGSCTTCEEECCGG
T ss_pred CCCCCchhhccHH---------HhhccCceEEeCCHH
Confidence 9999888777643 667888888887753
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1.8e-15 Score=162.01 Aligned_cols=294 Identities=16% Similarity=0.161 Sum_probs=166.2
Q ss_pred cCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccc
Q 040040 119 GLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAES 198 (869)
Q Consensus 119 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~ 198 (869)
+++.+++++. .+..++..+ .+++++|+++++ .++.++... +..+++|++|+++++ .++.+.... .+.
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL----PPDTALLDLQNN-KITEIKDGD----FKNLKNLHTLILINN-KISKISPGA--FAP 98 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC----CTTCCEEECCSS-CCCCBCTTT----TTTCTTCCEEECCSS-CCCCBCTTT--TTT
T ss_pred CCeEEEecCC-CccccCccC----CCCCeEEECCCC-cCCEeChhh----hccCCCCCEEECCCC-cCCeeCHHH--hcC
Confidence 3455555542 233333222 367788888777 566555422 356777888888776 555553222 446
Q ss_pred cCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc-
Q 040040 199 FLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR- 277 (869)
Q Consensus 199 l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~- 277 (869)
+++|++|+++++. ++.+|. .+ .++|++|+++++. +..++. ..+..+++|++|+++++.--.
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~--~~--~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPE--KM--PKTLQELRVHENE-ITKVRK------------SVFNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCS--SC--CTTCCEEECCSSC-CCBBCH------------HHHTTCTTCCEEECCSSCCCGG
T ss_pred CCCCCEEECCCCc-CCccCh--hh--cccccEEECCCCc-ccccCH------------hHhcCCccccEEECCCCcCCcc
Confidence 7788888887773 666644 22 2678888887764 344331 224457778888877754211
Q ss_pred -c-ccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 278 -S-FCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 278 -~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
. ...+..+++|++|++++|.+..+... ..++|++|+++++ .++.+ +...+..+++|++|+++++ .++.
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~ 230 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIPQG-------LPPSLTELHLDGN-KITKV-DAASLKGLNNLAKLGLSFN-SISA 230 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCSS-------CCTTCSEEECTTS-CCCEE-CTGGGTTCTTCCEEECCSS-CCCE
T ss_pred CcChhhccCCCCcCEEECCCCccccCCcc-------ccccCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCC-cCce
Confidence 1 12245677888888888875543221 1257888888775 35554 3345677888888888875 4554
Q ss_pred cccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCccc
Q 040040 356 IVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEK 435 (869)
Q Consensus 356 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 435 (869)
+... ....+++|+.|+++++. ++.++.. ...+++|+.|++.++ .++.++...+. ......
T Consensus 231 ~~~~--------~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~L~~L~l~~N-~i~~~~~~~f~---------~~~~~~ 290 (330)
T 1xku_A 231 VDNG--------SLANTPHLRELHLNNNK-LVKVPGG-LADHKYIQVVYLHNN-NISAIGSNDFC---------PPGYNT 290 (330)
T ss_dssp ECTT--------TGGGSTTCCEEECCSSC-CSSCCTT-TTTCSSCCEEECCSS-CCCCCCTTSSS---------CSSCCT
T ss_pred eChh--------hccCCCCCCEEECCCCc-CccCChh-hccCCCcCEEECCCC-cCCccChhhcC---------Cccccc
Confidence 4321 24467788888888875 6666553 234677777777663 34444322110 000001
Q ss_pred ccccccEEEEeccCCcccccchhHHhhcCCccEEEEcc
Q 040040 436 SFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGA 473 (869)
Q Consensus 436 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 473 (869)
...+++.|++.+++.....++...+..+++++.+++++
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 13556666666655332223334455566666666654
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=9.3e-18 Score=195.74 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=25.5
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEe
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIR 348 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~ 348 (869)
.+++|+.|.++++. ...+|.....+++|++|++++|. ++.......+..+++|++|++.
T Consensus 268 ~~~~L~~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCC-----TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccc-----hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 34455555554432 12233333445555555555544 3221111223445555555555
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=1.5e-15 Score=162.81 Aligned_cols=294 Identities=14% Similarity=0.129 Sum_probs=167.6
Q ss_pred cCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccc
Q 040040 119 GLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAES 198 (869)
Q Consensus 119 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~ 198 (869)
+++.+++++. .++.++..+ .++|++|+++++ .++.++... +..+++|++|+++++ .++.+.... .+.
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI----SPDTTLLDLQNN-DISELRKDD----FKGLQHLYALVLVNN-KISKIHEKA--FSP 100 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC----CTTCCEEECCSS-CCCEECTTT----TTTCTTCCEEECCSS-CCCEECGGG--STT
T ss_pred cCCEEECCCC-CccccCCCC----CCCCeEEECCCC-cCCccCHhH----hhCCCCCcEEECCCC-ccCccCHhH--hhC
Confidence 3555665553 333333322 467788888777 566554321 356777888888777 565553322 446
Q ss_pred cCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc-
Q 040040 199 FLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR- 277 (869)
Q Consensus 199 l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~- 277 (869)
+++|++|+++++ .++.+|. .+. ++|++|+++++. +..++. ..+..+++|++|+++++.--.
T Consensus 101 l~~L~~L~L~~n-~l~~l~~--~~~--~~L~~L~l~~n~-i~~~~~------------~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 101 LRKLQKLYISKN-HLVEIPP--NLP--SSLVELRIHDNR-IRKVPK------------GVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp CTTCCEEECCSS-CCCSCCS--SCC--TTCCEEECCSSC-CCCCCS------------GGGSSCSSCCEEECCSCCCBGG
T ss_pred cCCCCEEECCCC-cCCccCc--ccc--ccCCEEECCCCc-cCccCH------------hHhCCCccCCEEECCCCccccC
Confidence 778888888777 3666654 222 678888887754 444441 124457778888887754211
Q ss_pred -cccc-cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 278 -SFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 278 -~~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
..+. ...+ +|++|++++|.+..+... ..++|++|+++++ .++.+ +...+..+++|++|+++++ .++.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-------~~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~N-~l~~ 231 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGIPKD-------LPETLNELHLDHN-KIQAI-ELEDLLRYSKLYRLGLGHN-QIRM 231 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSCCSS-------SCSSCSCCBCCSS-CCCCC-CTTSSTTCTTCSCCBCCSS-CCCC
T ss_pred CCCcccccCC-ccCEEECcCCCCCccCcc-------ccCCCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCC-cCCc
Confidence 1111 2223 778888888775553221 1257888888774 45554 3344667788888888875 4554
Q ss_pred cccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCccc
Q 040040 356 IVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEK 435 (869)
Q Consensus 356 i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~ 435 (869)
+... ....+++|+.|+++++. ++.++.. ...+++|+.|++.++ .++.++...+. ......
T Consensus 232 ~~~~--------~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~L~~L~l~~N-~l~~~~~~~~~---------~~~~~~ 291 (332)
T 2ft3_A 232 IENG--------SLSFLPTLRELHLDNNK-LSRVPAG-LPDLKLLQVVYLHTN-NITKVGVNDFC---------PVGFGV 291 (332)
T ss_dssp CCTT--------GGGGCTTCCEEECCSSC-CCBCCTT-GGGCTTCCEEECCSS-CCCBCCTTSSS---------CSSCCS
T ss_pred CChh--------HhhCCCCCCEEECCCCc-CeecChh-hhcCccCCEEECCCC-CCCccChhHcc---------cccccc
Confidence 4321 24467788888888775 6666654 345677777777663 34444432110 000001
Q ss_pred ccccccEEEEeccCCcccccchhHHhhcCCccEEEEccc
Q 040040 436 SFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGAC 474 (869)
Q Consensus 436 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 474 (869)
.+.+|+.|++.+++.....++...+..+++|+.++++++
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 145677777777664322234445666777777777664
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=2.4e-15 Score=172.86 Aligned_cols=256 Identities=21% Similarity=0.166 Sum_probs=161.0
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
.++++|+++++ .++.+|... +++|++|+++++ +++.++. .+++|++|++++|. ++.+|.
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l-------~~~L~~L~L~~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~----- 98 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL-------PAHITTLVIPDN-NLTSLPA------LPPELRTLEVSGNQ-LTSLPV----- 98 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC-------CTTCSEEEECSC-CCSCCCC------CCTTCCEEEECSCC-CSCCCC-----
T ss_pred CCCcEEEecCC-CcCccChhh-------CCCCcEEEecCC-CCCCCCC------cCCCCCEEEcCCCc-CCcCCC-----
Confidence 35899999988 777887543 378999999988 6776654 46899999999984 777754
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWH 303 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~ 303 (869)
.+++|++|+++++. +..++. .+++|++|+++++ .+..++.. +++|++|++++|.+..+.
T Consensus 99 ~l~~L~~L~Ls~N~-l~~l~~----------------~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N~l~~l~- 157 (622)
T 3g06_A 99 LPPGLLELSIFSNP-LTHLPA----------------LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQLASLP- 157 (622)
T ss_dssp CCTTCCEEEECSCC-CCCCCC----------------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSCCC-
T ss_pred CCCCCCEEECcCCc-CCCCCC----------------CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCCcCCCcC-
Confidence 67889999998764 555551 3567777777764 35555542 467777777777644321
Q ss_pred CCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccC
Q 040040 304 NQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDL 383 (869)
Q Consensus 304 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~ 383 (869)
. .+++|+.|+++++ .++.+ | ..+++|+.|+++++ .++.++. .+++|+.|.++++
T Consensus 158 ----~---~~~~L~~L~L~~N-~l~~l-~----~~~~~L~~L~Ls~N-~l~~l~~------------~~~~L~~L~L~~N 211 (622)
T 3g06_A 158 ----A---LPSELCKLWAYNN-QLTSL-P----MLPSGLQELSVSDN-QLASLPT------------LPSELYKLWAYNN 211 (622)
T ss_dssp ----C---CCTTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS
T ss_pred ----C---ccCCCCEEECCCC-CCCCC-c----ccCCCCcEEECCCC-CCCCCCC------------ccchhhEEECcCC
Confidence 1 2446666666663 34443 2 33556666666653 3433311 2345555555554
Q ss_pred ccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhc
Q 040040 384 AKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARF 463 (869)
Q Consensus 384 ~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 463 (869)
. ++.++. .+++|+.|++++|. ++. +| ..+
T Consensus 212 ~-l~~l~~--------------------------------------------~~~~L~~L~Ls~N~-L~~-lp----~~l 240 (622)
T 3g06_A 212 R-LTSLPA--------------------------------------------LPSGLKELIVSGNR-LTS-LP----VLP 240 (622)
T ss_dssp C-CSSCCC--------------------------------------------CCTTCCEEECCSSC-CSC-CC----CCC
T ss_pred c-ccccCC--------------------------------------------CCCCCCEEEccCCc-cCc-CC----CCC
Confidence 3 333221 13566666666553 333 34 245
Q ss_pred CCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccCCCCcccCCCccEEEEecCC
Q 040040 464 LKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQ 536 (869)
Q Consensus 464 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~ 536 (869)
++|++|++++| .++.++. .+++|+.|+++++ .++.+ |..+.++++|+.|++++++
T Consensus 241 ~~L~~L~Ls~N-~L~~lp~------------~~~~L~~L~Ls~N-~L~~l----p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 241 SELKELMVSGN-RLTSLPM------------LPSGLLSLSVYRN-QLTRL----PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSS-CCCSC----CGGGGGSCTTCEEECCSCC
T ss_pred CcCcEEECCCC-CCCcCCc------------ccccCcEEeCCCC-CCCcC----CHHHhhccccCEEEecCCC
Confidence 67777777773 5555543 4567777887775 56666 6678888888888888753
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=3.2e-15 Score=171.72 Aligned_cols=255 Identities=20% Similarity=0.132 Sum_probs=179.3
Q ss_pred ccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeecccccccccccccC
Q 040040 438 CKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNKD 517 (869)
Q Consensus 438 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 517 (869)
.+++.|+++++. ++. +|... .++|++|++++| .++.++. .+++|++|+++++ +++.+
T Consensus 40 ~~l~~L~ls~n~-L~~-lp~~l---~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~l---- 96 (622)
T 3g06_A 40 NGNAVLNVGESG-LTT-LPDCL---PAHITTLVIPDN-NLTSLPA------------LPPELRTLEVSGN-QLTSL---- 96 (622)
T ss_dssp HCCCEEECCSSC-CSC-CCSCC---CTTCSEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCSCC----
T ss_pred CCCcEEEecCCC-cCc-cChhh---CCCCcEEEecCC-CCCCCCC------------cCCCCCEEEcCCC-cCCcC----
Confidence 468888887765 443 46533 278899999884 5666643 5678888888886 46666
Q ss_pred CCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCCceecCCCCCCCCCCCceee
Q 040040 518 PRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYLTTFYSGMHTLECPERANLI 597 (869)
Q Consensus 518 p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 597 (869)
|. .+++|++|++++ +++..+ |. .+++|+.|+++++. +..++.. .++|++|+
T Consensus 97 p~---~l~~L~~L~Ls~-N~l~~l-~~------------------~l~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~ 147 (622)
T 3g06_A 97 PV---LPPGLLELSIFS-NPLTHL-PA------------------LPSGLCKLWIFGNQ-LTSLPVL-----PPGLQELS 147 (622)
T ss_dssp CC---CCTTCCEEEECS-CCCCCC-CC------------------CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEE
T ss_pred CC---CCCCCCEEECcC-CcCCCC-CC------------------CCCCcCEEECCCCC-CCcCCCC-----CCCCCEEE
Confidence 44 678888888887 466665 42 25788888888764 4555443 37888888
Q ss_pred ecc-ccCccccccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecCCCccchHHHHHhccccceEEEE
Q 040040 598 FQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLK 676 (869)
Q Consensus 598 l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~ 676 (869)
+++ ++..++. .+++|+.|++++|.+..++ ..+++|+.|++++|....+|.
T Consensus 148 Ls~N~l~~l~~-------------~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~l~~l~~--------------- 198 (622)
T 3g06_A 148 VSDNQLASLPA-------------LPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLASLPT--------------- 198 (622)
T ss_dssp CCSSCCSCCCC-------------CCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC---------------
T ss_pred CcCCcCCCcCC-------------ccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCCCCCCCC---------------
Confidence 888 7776654 2577888888888887765 557788888886555555552
Q ss_pred EEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEecccchhhcccceeEecccchhccccCCCcceeec
Q 040040 677 VEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKECALSLISLRIEIVFSKLKWLFLESSGSITSFCS 756 (869)
Q Consensus 677 ~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~c~~~l~~l~~~~~~~~L~~L~l~~l~~l~~~~~ 756 (869)
.+++|+.|+++++ .++ .+. ..+++|+.|++++|. +..+| ..+++|+.|.+.++ +++.++.
T Consensus 199 ------~~~~L~~L~L~~N-~l~-~l~-------~~~~~L~~L~Ls~N~--L~~lp--~~l~~L~~L~Ls~N-~L~~lp~ 258 (622)
T 3g06_A 199 ------LPSELYKLWAYNN-RLT-SLP-------ALPSGLKELIVSGNR--LTSLP--VLPSELKELMVSGN-RLTSLPM 258 (622)
T ss_dssp ------CCTTCCEEECCSS-CCS-SCC-------CCCTTCCEEECCSSC--CSCCC--CCCTTCCEEECCSS-CCSCCCC
T ss_pred ------ccchhhEEECcCC-ccc-ccC-------CCCCCCCEEEccCCc--cCcCC--CCCCcCcEEECCCC-CCCcCCc
Confidence 2456777777764 344 331 235788888888885 77777 35678888888775 4555544
Q ss_pred CCeeeeCCCcceEeeccCCCccccCCCCcCCCcceEEEccCCC
Q 040040 757 GNYAISFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 757 ~~~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~~ 799 (869)
.+++|+.|++++| .++.+|.++...++|+.|++++|.
T Consensus 259 -----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 -----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 4578999999999 566888888889999999998544
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=9.6e-15 Score=163.02 Aligned_cols=224 Identities=19% Similarity=0.194 Sum_probs=163.0
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.+++++|+++++ .++.++... +..+++|++|+++++ .++.+.... ...+++|++|+++++ +++.+++ ..+
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~----~~~l~~L~~L~Ls~n-~i~~i~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 132 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNS----FKHLRHLEILQLSRN-HIRTIEIGA--FNGLANLNTLELFDN-RLTTIPN-GAF 132 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTT----TSSCSSCCEEECCSS-CCCEECGGG--GTTCSSCCEEECCSS-CCSSCCT-TTS
T ss_pred CCCCcEEEccCC-cCCeeCHHH----hhCCCCCCEEECCCC-cCCccChhh--ccCCccCCEEECCCC-cCCeeCH-hHh
Confidence 478899999888 676665432 367889999999988 576665443 347889999999988 5777765 467
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~ 300 (869)
..+++|++|+++++. +..++. ..+..+++|++|+++++..+..++. +..+++|++|++++|.+..
T Consensus 133 ~~l~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 133 VYLSKLKELWLRNNP-IESIPS------------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSCSSCCEEECCSCC-CCEECT------------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred hccccCceeeCCCCc-ccccCH------------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 888999999998865 555552 2345688899999988887777664 5667889999999888665
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+. . +..+++|++|+++++ .++.+ +...+..+++|++|+++++ .++.+... ....+++|+.|++
T Consensus 200 ~~-----~-~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~~l~~L~~L~L 262 (440)
T 3zyj_A 200 IP-----N-LTPLIKLDELDLSGN-HLSAI-RPGSFQGLMHLQKLWMIQS-QIQVIERN--------AFDNLQSLVEINL 262 (440)
T ss_dssp CC-----C-CTTCSSCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTC-CCCEECTT--------SSTTCTTCCEEEC
T ss_pred cc-----c-cCCCcccCEEECCCC-ccCcc-ChhhhccCccCCEEECCCC-ceeEEChh--------hhcCCCCCCEEEC
Confidence 42 2 345788899999886 56665 3355778888999988885 56554332 2456788888888
Q ss_pred ccCccccccCCCcccCCCCccEEEEcc
Q 040040 381 KDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 381 ~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
+++. ++.++......+++|+.|++.+
T Consensus 263 ~~N~-l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 263 AHNN-LTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TTSC-CCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCC-CCccChhHhccccCCCEEEcCC
Confidence 8874 7777766666677777777766
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=1.3e-14 Score=162.67 Aligned_cols=225 Identities=18% Similarity=0.161 Sum_probs=162.6
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.+++++|+++++ .++.++... +..+++|++|+++++ .++.++... ...+++|++|+++++ +++.+++ ..+
T Consensus 74 ~~~l~~L~L~~n-~i~~~~~~~----~~~l~~L~~L~Ls~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~ 143 (452)
T 3zyi_A 74 PSNTRYLNLMEN-NIQMIQADT----FRHLHHLEVLQLGRN-SIRQIEVGA--FNGLASLNTLELFDN-WLTVIPS-GAF 143 (452)
T ss_dssp CTTCSEEECCSS-CCCEECTTT----TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCSBCCT-TTS
T ss_pred CCCccEEECcCC-cCceECHHH----cCCCCCCCEEECCCC-ccCCcChhh--ccCcccCCEEECCCC-cCCccCh-hhh
Confidence 368899999888 666664332 367888999999888 676665443 347889999999888 4777765 467
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~ 300 (869)
+++++|++|+++++. +..++. ..+..+++|++|+++++..+..++. +..+++|++|++++|.+..
T Consensus 144 ~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 144 EYLSKLRELWLRNNP-IESIPS------------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCTTCCEEECCSCC-CCEECT------------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred cccCCCCEEECCCCC-cceeCH------------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 888999999998865 556652 2345688899999988888877764 5577889999999888665
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+ |. +..+++|++|+++++ .++.+ ++..+..+++|+.|+++++ .++.+... ....+++|+.|++
T Consensus 211 ~-----~~-~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~~l~~L~~L~L 273 (452)
T 3zyi_A 211 M-----PN-LTPLVGLEELEMSGN-HFPEI-RPGSFHGLSSLKKLWVMNS-QVSLIERN--------AFDGLASLVELNL 273 (452)
T ss_dssp C-----CC-CTTCTTCCEEECTTS-CCSEE-CGGGGTTCTTCCEEECTTS-CCCEECTT--------TTTTCTTCCEEEC
T ss_pred c-----cc-ccccccccEEECcCC-cCccc-CcccccCccCCCEEEeCCC-cCceECHH--------HhcCCCCCCEEEC
Confidence 4 22 345788999999885 45655 3455788889999998885 45554322 2456788888888
Q ss_pred ccCccccccCCCcccCCCCccEEEEccC
Q 040040 381 KDLAKLTRFCSGNCIELPSLKQLRMAKC 408 (869)
Q Consensus 381 ~~~~~L~~l~~~~~~~l~~L~~L~l~~c 408 (869)
+++. ++.++......+++|+.|++.+.
T Consensus 274 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 274 AHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred CCCc-CCccChHHhccccCCCEEEccCC
Confidence 8874 77777666666777777777663
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=9.7e-15 Score=163.59 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=178.8
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
++++.|++++. .+..+.+... ..+++|++|+++++ .+..++... +..+++|++|+++++ .++.++... .+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGA----FNGLASLNTLELFDN-WLTVIPSGA--FE 144 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTT----TTTCTTCCEEECCSS-CCSBCCTTT--SS
T ss_pred CCccEEECcCC-cCceECHHHc-CCCCCCCEEECCCC-ccCCcChhh----ccCcccCCEEECCCC-cCCccChhh--hc
Confidence 57889999884 4544433322 67999999999998 677776432 467899999999998 677776554 34
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+++|++|+++++. ++.+++ ..+.++++|++|++++|..+..++.. .+..+++|++|+++++ .+.
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~------------~~~~l~~L~~L~L~~n-~l~ 209 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPS-YAFNRVPSLMRLDLGELKKLEYISEG------------AFEGLFNLKYLNLGMC-NIK 209 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT------------TTTTCTTCCEEECTTS-CCS
T ss_pred ccCCCCEEECCCCC-cceeCH-hHHhcCCcccEEeCCCCCCccccChh------------hccCCCCCCEEECCCC-ccc
Confidence 79999999999995 887765 57899999999999999988888732 3456899999999986 577
Q ss_pred cccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccc
Q 040040 278 SFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIV 357 (869)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~ 357 (869)
.++.+..+++|++|++++|.+..+... .+..+++|++|+++++ .++.+ +...+..+++|+.|+++++ .++.++
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNS-QVSLI-ERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred ccccccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCC-cCceE-CHHHhcCCCCCCEEECCCC-cCCccC
Confidence 788888999999999999997765333 3455899999999985 56665 3455788999999999996 676654
Q ss_pred cccccccccccccccCccceeecccCc
Q 040040 358 FPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 358 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
.. ....+++|+.|++++++
T Consensus 283 ~~--------~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HD--------LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TT--------SSTTCTTCCEEECCSSC
T ss_pred hH--------HhccccCCCEEEccCCC
Confidence 32 24568999999999987
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=7.4e-15 Score=163.91 Aligned_cols=227 Identities=17% Similarity=0.195 Sum_probs=179.1
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
++++.|++++. .+..+..... ..+++|++|+++++ .+..++... +..+++|++|+++++ +++.++... ..
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSF-KHLRHLEILQLSRN-HIRTIEIGA----FNGLANLNTLELFDN-RLTTIPNGA--FV 133 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTT-SSCSSCCEEECCSS-CCCEECGGG----GTTCSSCCEEECCSS-CCSSCCTTT--SC
T ss_pred CCCcEEEccCC-cCCeeCHHHh-hCCCCCCEEECCCC-cCCccChhh----ccCCccCCEEECCCC-cCCeeCHhH--hh
Confidence 57888999874 4555443322 67899999999998 677665332 367899999999998 788776544 34
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+++|++|+++++. ++.+++ ..+.++++|++|++++|..+..++.. .+..+++|++|+++++ .++
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~------------~~~~l~~L~~L~L~~n-~l~ 198 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYISEG------------AFEGLSNLRYLNLAMC-NLR 198 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTT------------TTTTCSSCCEEECTTS-CCS
T ss_pred ccccCceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCcceeCcc------------hhhcccccCeecCCCC-cCc
Confidence 79999999999995 777765 57889999999999999888887732 3456899999999986 577
Q ss_pred cccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccc
Q 040040 278 SFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIV 357 (869)
Q Consensus 278 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~ 357 (869)
.++.+..+++|++|+|++|.+..+....+ ..+++|++|+++++ .++.+ +...+..+++|++|+++++ .++.++
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSF----QGLMHLQKLWMIQS-QIQVI-ERNAFDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTC-CCCEE-CTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred cccccCCCcccCEEECCCCccCccChhhh----ccCccCCEEECCCC-ceeEE-ChhhhcCCCCCCEEECCCC-CCCccC
Confidence 88888899999999999999776644434 45899999999985 56666 4456788999999999995 676654
Q ss_pred cccccccccccccccCccceeecccCc
Q 040040 358 FPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 358 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
.. ....+++|+.|++++++
T Consensus 272 ~~--------~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HD--------LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TT--------TTSSCTTCCEEECCSSC
T ss_pred hh--------HhccccCCCEEEcCCCC
Confidence 32 24568999999999987
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=157.33 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=101.3
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.|+.....+.+++ .++.+|.. .+++|++|+++++ +++.++... ...+++|++|+++++ .++.+++ ..
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~~-------~~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~ 95 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPSG-------LTEAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSN-GINTIEE-DS 95 (353)
T ss_dssp EECTTSEEECCST-TCSSCCTT-------CCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred CCCCCeEeeCCCC-Cccccccc-------ccccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCC-ccCccCH-hh
Confidence 3555556666655 66777653 3468888888887 576665533 347888888888887 4666654 35
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc---cccCCCcCEEEecccc-
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS---VVAFPNLETLKLSAIN- 297 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~L~~~~- 297 (869)
++++++|++|+++++. +..++. ..+..+++|++|+++++ .+..++. +..+++|++|++++|.
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNY-LSNLSS------------SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp TTTCTTCCEEECCSSC-CSSCCH------------HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred cCCCCCCCEEECCCCc-CCcCCH------------hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcc
Confidence 7778888888888764 444441 11344666777777664 2334433 3445566666666653
Q ss_pred ccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 298 SETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 298 l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
+..+... .++.+++|++|+++++. ++...+ ..+..+++|++|+++++
T Consensus 162 ~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 162 FTKIQRK----DFAGLTFLEELEIDASD-LQSYEP-KSLKSIQNVSHLILHMK 208 (353)
T ss_dssp CCEECTT----TTTTCCEEEEEEEEETT-CCEECT-TTTTTCSEEEEEEEECS
T ss_pred ccccCHH----HccCCCCCCEEECCCCC-cCccCH-HHHhccccCCeecCCCC
Confidence 3332211 12235556666665542 333322 33455555666665554
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=155.94 Aligned_cols=259 Identities=19% Similarity=0.194 Sum_probs=174.5
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.++... +..+++|++|+++++ .++++.... .+.+++|++|+++++ +++.+++ ..+
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~-~~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNSD----LQRCVNLQALVLTSN-GINTIEEDS--FSSLGSLEHLDLSYN-YLSNLSS-SWF 120 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTT----TTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCSSCCH-HHH
T ss_pred cccCcEEECCCC-cCcccCHHH----hccCCCCCEEECCCC-ccCccCHhh--cCCCCCCCEEECCCC-cCCcCCH-hHh
Confidence 468999999988 677776532 367899999999988 677665433 447899999999988 4777754 457
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc--ccccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC--SVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~L~~~~l~~ 300 (869)
+++++|++|+++++. +..++.. ..+..+++|++|+++++..+..++ .+..+++|++|++++|.+..
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~-----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGET-----------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCccCCEEECCCCC-CcccCch-----------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 889999999998864 5555520 134568899999999886666654 35678899999999998665
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+. |..++.+++|++|+++++. ++.+ +...+..+++|+.|+++++ .++.+....-. .....+.++.+++
T Consensus 189 ~~----~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~-----~~~~~~~l~~l~L 256 (353)
T 2z80_A 189 YE----PKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDT-DLDTFHFSELS-----TGETNSLIKKFTF 256 (353)
T ss_dssp EC----TTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESC-BCTTCCCC-----------CCCCCCEEEE
T ss_pred cC----HHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCC-ccccccccccc-----cccccchhhcccc
Confidence 42 3344558899999999864 5554 5555667899999999986 45543221100 1123445666666
Q ss_pred ccCc----cccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcc
Q 040040 381 KDLA----KLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLW 452 (869)
Q Consensus 381 ~~~~----~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 452 (869)
.++. .+..++. ....+++|+.|+++++ +++.+|...+ +.+++|++|++++|+-..
T Consensus 257 ~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N-~l~~i~~~~~---------------~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 257 RNVKITDESLFQVMK-LLNQISGLLELEFSRN-QLKSVPDGIF---------------DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ESCBCCHHHHHHHHH-HHHTCTTCCEEECCSS-CCCCCCTTTT---------------TTCTTCCEEECCSSCBCC
T ss_pred ccccccCcchhhhHH-HHhcccCCCEEECCCC-CCCccCHHHH---------------hcCCCCCEEEeeCCCccC
Confidence 5543 1112221 1235788888888775 5556654211 226888999998887765
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=1.8e-14 Score=152.63 Aligned_cols=251 Identities=17% Similarity=0.097 Sum_probs=132.1
Q ss_pred CCccEeeccccccccc---cccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccc
Q 040040 173 PLLESLSLSNLMNLEK---ISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGRED 249 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~---l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~ 249 (869)
.++++|+++++ ++.+ ++.. .+.+++|++|+++++.++....+ ..++++++|++|+++++.....+|
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~---l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p------ 118 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS---LANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIP------ 118 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG---GGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECC------
T ss_pred ceEEEEECCCC-CccCCcccChh---HhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCC------
Confidence 57888888877 4543 3332 55788888888886434554333 367788888888888776433444
Q ss_pred ccCCccccccccCCcccEEeccCCCCccccc-ccccCCCcCEEEeccccccccccCCCCCcccccC-CceEEEEecCCCC
Q 040040 250 DINNTEVIDKIEFSQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQ-NLTRLIVHGCNNL 327 (869)
Q Consensus 250 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~-~L~~L~l~~c~~l 327 (869)
..+..+++|++|+++++.--..++ .+..+++|++|++++|.+... +|..++.++ +|++|+++++. +
T Consensus 119 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~-l 186 (313)
T 1ogq_A 119 -------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNR-L 186 (313)
T ss_dssp -------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSE-E
T ss_pred -------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCe-e
Confidence 334456666666666543221222 234455555555555543311 222233343 55555555432 2
Q ss_pred ccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 328 KFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 328 ~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
+...| ..+..++ |++|++++ +. ++.........+++|+.|++.+
T Consensus 187 ~~~~~-~~~~~l~-L~~L~Ls~---------------------------------N~-l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 187 TGKIP-PTFANLN-LAFVDLSR---------------------------------NM-LEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp EEECC-GGGGGCC-CSEEECCS---------------------------------SE-EEECCGGGCCTTSCCSEEECCS
T ss_pred eccCC-hHHhCCc-ccEEECcC---------------------------------Cc-ccCcCCHHHhcCCCCCEEECCC
Confidence 22212 2233333 55555554 32 2222222222344444444444
Q ss_pred CCccccccccccCCCceEeeeeccCcccccccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccC
Q 040040 408 CPELKAFILQNINTDMTVVGIQSFFNEKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELN 487 (869)
Q Consensus 408 c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 487 (869)
+.--...+. ...+++|++|++++|. +...+|. .+..+++|++|+++++.-...+|..
T Consensus 231 N~l~~~~~~-----------------~~~l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~---- 287 (313)
T 1ogq_A 231 NSLAFDLGK-----------------VGLSKNLNGLDLRNNR-IYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG---- 287 (313)
T ss_dssp SEECCBGGG-----------------CCCCTTCCEEECCSSC-CEECCCG-GGGGCTTCCEEECCSSEEEEECCCS----
T ss_pred CceeeecCc-----------------ccccCCCCEEECcCCc-ccCcCCh-HHhcCcCCCEEECcCCcccccCCCC----
Confidence 221111110 0225778888887775 4434454 3567888888888885433355432
Q ss_pred ccccccccccccceeecccccccc
Q 040040 488 SEETHSGAVSRLRELHVFCLPKLT 511 (869)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~~~~L~ 511 (869)
+.+++|+.|++.+++.+.
T Consensus 288 ------~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 288 ------GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ------TTGGGSCGGGTCSSSEEE
T ss_pred ------ccccccChHHhcCCCCcc
Confidence 367778888887766543
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=6.3e-17 Score=182.38 Aligned_cols=212 Identities=17% Similarity=0.132 Sum_probs=96.6
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCce-----ecCCCCCCCCCCCCCCccEeeccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLL-----CINDSTELVPRDAFPLLESLSLSNLMNLEKISCS 192 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 192 (869)
++++.|++++.. +......-....+++|++|++++| .+. .++.. ...+++|++|+++++ .+.+....
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~-----l~~~~~L~~L~Ls~n-~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSA-----LRVNPALAELNLRSN-ELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHH-----HHTCTTCCEEECTTC-CCHHHHHH
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHH-----HHhCCCcCEEeCCCC-cCChHHHH
Confidence 456677776533 222211100145677777777777 333 12211 134577777777776 34331111
Q ss_pred cccccccC----CCCEEEecCCCCCcccC---ChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccc-cccCCc
Q 040040 193 QLRAESFL----RLRNLKVESCEKLTHIF---SFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVID-KIEFSQ 264 (869)
Q Consensus 193 ~~~~~~l~----~L~~L~L~~c~~l~~l~---~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~-~~~l~~ 264 (869)
.+ ...++ +|++|++++|. ++... ....+..+++|++|+++++. +......... .. ....++
T Consensus 75 ~l-~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~--------~~l~~~~~~ 143 (461)
T 1z7x_W 75 CV-LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLC--------EGLLDPQCR 143 (461)
T ss_dssp HH-HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHH--------HHHTSTTCC
T ss_pred HH-HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHH--------HHHhcCCCc
Confidence 10 01233 57777777774 44210 01356677777777777665 2211100000 00 011345
Q ss_pred ccEEeccCCCCcccc-----c-ccccCCCcCEEEeccccccccccCCCCCc-ccccCCceEEEEecCCCCcccc---Chh
Q 040040 265 LRKLTLKSLPQLRSF-----C-SVVAFPNLETLKLSAINSETIWHNQLPAM-SSCIQNLTRLIVHGCNNLKFLF---STS 334 (869)
Q Consensus 265 L~~L~l~~~~~l~~~-----~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~---~~~ 334 (869)
|++|++++|. +... + .+..+++|++|++++|.+.......+... ....++|++|++++|. ++... -..
T Consensus 144 L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 221 (461)
T 1z7x_W 144 LEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCG 221 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHH
T ss_pred ceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHH
Confidence 6677766653 2221 1 12334666666666665332111111100 0113466666666653 33210 012
Q ss_pred hHhccCCccEEEEecc
Q 040040 335 LVRSFVQLQHLEIRKC 350 (869)
Q Consensus 335 ~~~~L~~L~~L~l~~c 350 (869)
.+..+++|++|++++|
T Consensus 222 ~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 222 IVASKASLRELALGSN 237 (461)
T ss_dssp HHHHCTTCCEEECCSS
T ss_pred HHHhCCCccEEeccCC
Confidence 3445566666666664
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=2.5e-14 Score=151.35 Aligned_cols=229 Identities=21% Similarity=0.218 Sum_probs=118.6
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.++... +..+++|++|+++++ .++.+...+.....+++|++|+++++. ++.++. .+
T Consensus 27 ~~~l~~L~L~~n-~l~~i~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~--~~ 97 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLPHGV----FDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS--NF 97 (306)
T ss_dssp CTTCCEEECCSS-CCCCCCTTT----TTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEE--EE
T ss_pred CCCCCEEECCCC-ccCccCHhH----hhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChh--hc
Confidence 357777777776 555555432 246677777777766 444332111113356777777777773 555543 46
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEecccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l~~i 301 (869)
.++++|++|+++++. +..++.. ..+..+++|++|+++++.--...+. +..+++|++|++++|.+..
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 164 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEF-----------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE- 164 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTT-----------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred CCCCCCCEEECCCCc-ccccccc-----------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-
Confidence 667777777777643 3333310 1234466677777766542222221 3445666777776665332
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMK 381 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~ 381 (869)
...|..+..+++|++|++++| .++.+ ++..+..+++|++|+++++ .++.+... ....+++|+.|+++
T Consensus 165 --~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 165 --NFLPDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLDTF--------PYKCLNSLQVLDYS 231 (306)
T ss_dssp --GEECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCSBCCSG--------GGTTCTTCCEEECT
T ss_pred --ccchhHHhhCcCCCEEECCCC-CcCCc-CHHHhcCCCCCCEEECCCC-ccCccChh--------hccCcccCCEeECC
Confidence 112333444666666666664 34443 2233556666666666664 34333211 12345566666666
Q ss_pred cCccccccCCCcccCCC-CccEEEEcc
Q 040040 382 DLAKLTRFCSGNCIELP-SLKQLRMAK 407 (869)
Q Consensus 382 ~~~~L~~l~~~~~~~l~-~L~~L~l~~ 407 (869)
++. +..........++ +|+.|++.+
T Consensus 232 ~N~-l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 232 LNH-IMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TSC-CCBCSSSSCCCCCTTCCEEECTT
T ss_pred CCC-CcccCHHHHHhhhccCCEEEccC
Confidence 654 4433332222332 444444443
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.57 E-value=6.8e-15 Score=155.90 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=27.9
Q ss_pred CCCCCccEeecccccccc-ccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 170 DAFPLLESLSLSNLMNLE-KISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
..+++|++|+++++ .+. .++.. .+.+++|++|+++++. ++...+ ..++.+++|++|+++++.
T Consensus 98 ~~l~~L~~L~Ls~n-~l~~~~p~~---~~~l~~L~~L~Ls~N~-l~~~~p-~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 98 AKLTQLHYLYITHT-NVSGAIPDF---LSQIKTLVTLDFSYNA-LSGTLP-PSISSLPNLVGITFDGNR 160 (313)
T ss_dssp GGCTTCSEEEEEEE-CCEEECCGG---GGGCTTCCEEECCSSE-EESCCC-GGGGGCTTCCEEECCSSC
T ss_pred hcCCCCCEEECcCC-eeCCcCCHH---HhCCCCCCEEeCCCCc-cCCcCC-hHHhcCCCCCeEECcCCc
Confidence 34555555555554 233 22221 3345555555555553 332212 244555555555555543
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=4e-15 Score=158.16 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred cccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCc-cccccccccCccccccccccccceeecccccccccccc
Q 040040 437 FCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSL-EEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWN 515 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 515 (869)
+++|+.|++++|. +.. +|.. +..+++|+.|+++++.-. ..++.. . ..+++|+.|++.+++.++..
T Consensus 213 l~~L~~L~L~~N~-l~~-l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~-------~--~~~~~L~~l~l~~~~~l~~~-- 278 (317)
T 3o53_A 213 AAGVTWISLRNNK-LVL-IEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-------F--SKNQRVQTVAKQTVKKLTGQ-- 278 (317)
T ss_dssp GTTCSEEECTTSC-CCE-ECTT-CCCCTTCCEEECTTCCCBHHHHHHH-------H--HTCHHHHHHHHHHHHHHHSS--
T ss_pred cCcccEEECcCCc-ccc-hhhH-hhcCCCCCEEEccCCCccCcCHHHH-------H--hccccceEEECCCchhccCC--
Confidence 5667777776664 433 3443 456778888888775433 122211 1 35677777777776666544
Q ss_pred cCCCCcccCCCccEEEEecCCCccc
Q 040040 516 KDPRGKLIFPNLVLVRIFECQRLKS 540 (869)
Q Consensus 516 ~~p~~~~~l~~L~~L~l~~c~~L~~ 540 (869)
...-...+.+....-..|..+..
T Consensus 279 --~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 279 --NEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp --SSCCCSSTTCEEETTEEEBCCTT
T ss_pred --chhccCCCceecccceeeccCCh
Confidence 11222233333333334666654
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=5.6e-14 Score=142.68 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=100.2
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
++|++|+++++ .++.++... +..+++|++|+++++..++.++... ...+++|++|++++|.+++.+++ ..+.
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~----~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~-~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDP-DALK 102 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT----TTTCTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECT-TSEE
T ss_pred CcccEEEEeCC-cceEECHHH----ccCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCH-HHhC
Confidence 47888888877 566666532 3567778888888774466665443 33677888888877556777654 3567
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCccc---EEeccCCCCcccccc--cccCCCcC-EEEecccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLR---KLTLKSLPQLRSFCS--VVAFPNLE-TLKLSAIN 297 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~--~~~l~~L~-~L~L~~~~ 297 (869)
++++|++|+++++. ++.+|. +..+++|+ +|++++++.+..++. +..+++|+ +|++++|.
T Consensus 103 ~l~~L~~L~l~~n~-l~~lp~--------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 103 ELPLLKFLGIFNTG-LKMFPD--------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp CCTTCCEEEEEEEC-CCSCCC--------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCEEeCCCCC-Cccccc--------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 77788888887764 444441 22234444 666666544554443 33455555 55555555
Q ss_pred ccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhcc-CCccEEEEec
Q 040040 298 SETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSF-VQLQHLEIRK 349 (869)
Q Consensus 298 l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~~L~l~~ 349 (869)
++.+....+. .++|++|+++++..++.+ +...+..+ ++|+.|++++
T Consensus 168 l~~i~~~~~~-----~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 168 FTSVQGYAFN-----GTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CCEECTTTTT-----TCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTT
T ss_pred CcccCHhhcC-----CCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCC
Confidence 4433222111 245555555554334443 22334444 5555555555
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=9.3e-14 Score=145.23 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccc
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMI 363 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~ 363 (869)
.+++|++|++++|.+..+... .++.+++|++|+++++ .++.+ +...+..+++|++|+++++ .+..+...
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~---- 195 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGN-RISSV-PERAFRGLHSLDRLLLHQN-RVAHVHPH---- 195 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECTT----
T ss_pred CCcCCCEEECCCCcccccCHh----HhccCCCccEEECCCC-ccccc-CHHHhcCccccCEEECCCC-cccccCHh----
Confidence 344555555555543332211 1223455555555553 33433 2233445555555555553 23332111
Q ss_pred cccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 364 EEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 364 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
....+++|+.|+++++. ++.++......+++|+.|++.+
T Consensus 196 ----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 196 ----AFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ----TTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCS
T ss_pred ----HccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccC
Confidence 12344555555555543 4433332223344444444433
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=5.4e-14 Score=148.75 Aligned_cols=227 Identities=19% Similarity=0.152 Sum_probs=165.5
Q ss_pred hccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecC---CCCCCCCCCCCCCccEeecccccccccccccc
Q 040040 117 LKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCIN---DSTELVPRDAFPLLESLSLSNLMNLEKISCSQ 193 (869)
Q Consensus 117 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~---~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 193 (869)
.++++.|++++. .+..++.... ..+++|++|+++++ .+..+. ..+ ..+++|++|+++++ .+..++..
T Consensus 27 ~~~l~~L~L~~n-~l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~-----~~~~~L~~L~Ls~n-~i~~l~~~- 96 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLPHGVF-DKLTQLTKLSLSSN-GLSFKGCCSQSD-----FGTTSLKYLDLSFN-GVITMSSN- 96 (306)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCEEEEEEHHH-----HSCSCCCEEECCSC-SEEEEEEE-
T ss_pred CCCCCEEECCCC-ccCccCHhHh-hccccCCEEECCCC-ccCcccCccccc-----ccccccCEEECCCC-ccccChhh-
Confidence 357889999874 4555544322 67899999999998 555431 211 35799999999998 67766654
Q ss_pred ccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCC
Q 040040 194 LRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSL 273 (869)
Q Consensus 194 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 273 (869)
...+++|++|+++++. ++.+++...+..+++|++|+++++.. ...+. ..+..+++|++|+++++
T Consensus 97 --~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~------------~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 97 --FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHT-RVAFN------------GIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp --EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCC-EECST------------TTTTTCTTCCEEECTTC
T ss_pred --cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcC-Cccch------------hhcccCcCCCEEECCCC
Confidence 5579999999999984 77776545789999999999999763 33331 23456899999999987
Q ss_pred CCcc-ccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccc
Q 040040 274 PQLR-SFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCM 351 (869)
Q Consensus 274 ~~l~-~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 351 (869)
.-.. .++ .+..+++|++|++++|.+..+. |..+..+++|++|+++++ .++.+ +...+..+++|++|+++++
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N- 233 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHN-NFFSL-DTFPYKCLNSLQVLDYSLN- 233 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTS-CCSBC-CSGGGTTCTTCCEEECTTS-
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCC-ccCcc-ChhhccCcccCCEeECCCC-
Confidence 5322 133 3567899999999999876653 333455899999999986 46665 3345788999999999996
Q ss_pred ccccccccccccccccccccc-CccceeecccCc
Q 040040 352 DLEGIVFPEEMIEEERKDIVF-PQLNFLKMKDLA 384 (869)
Q Consensus 352 ~l~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 384 (869)
.+...... ....+ ++|+.|++++++
T Consensus 234 ~l~~~~~~--------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 234 HIMTSKKQ--------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCBCSSS--------SCCCCCTTCCEEECTTCC
T ss_pred CCcccCHH--------HHHhhhccCCEEEccCCC
Confidence 45544322 23455 489999999987
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=4.8e-16 Score=175.14 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccC---ChhhhcCCCCCcEEEEeecC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIF---SFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~---~~~~~~~L~~L~~L~l~~c~ 237 (869)
++|++|+++++ ++........ ...+++|++|++++|. ++... -...+..+++|++|+++++.
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~-~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 67 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAEL-LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE 67 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHH-HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred ccceehhhhhc-ccCchhHHHH-HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc
Confidence 45666666655 3433221110 2356666777776664 43210 00234556666666666643
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=2.2e-13 Score=142.32 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=148.9
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.++... +..+++|++|+++++ .++.+.... .+.+++|++|+++++..++.+++ ..+
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~----~~~~~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~~l~~~~~-~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAAS----FRACRNLTILWLHSN-VLARIDAAA--FTGLALLEQLDLSDNAQLRSVDP-ATF 101 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTT----TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSCTTCCCCCT-TTT
T ss_pred CCCceEEEeeCC-cCCccCHHH----cccCCCCCEEECCCC-ccceeCHhh--cCCccCCCEEeCCCCCCccccCH-HHh
Confidence 578999999988 677766432 367889999999987 566664332 45789999999999876777754 468
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~ 300 (869)
..+++|++|+++++. +..++. ..+..+++|++|+++++. +..++. +..+++|++|++++|.+..
T Consensus 102 ~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCG-LQELGP------------GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp TTCTTCCEEECTTSC-CCCCCT------------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcCCCEEECCCCc-CCEECH------------hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc
Confidence 889999999999876 344431 234568899999998864 444443 4678899999999998766
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeec
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l 380 (869)
+....+ ..+++|++|+++++ .++.+.+ ..+..+++|+.|+++++ .++.++.. ....+++|+.|++
T Consensus 168 ~~~~~~----~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~--------~~~~l~~L~~L~l 232 (285)
T 1ozn_A 168 VPERAF----RGLHSLDRLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFAN-NLSALPTE--------ALAPLRALQYLRL 232 (285)
T ss_dssp ECTTTT----TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCHH--------HHTTCTTCCEEEC
T ss_pred cCHHHh----cCccccCEEECCCC-cccccCH-hHccCcccccEeeCCCC-cCCcCCHH--------HcccCcccCEEec
Confidence 543333 34889999999986 4565533 45778999999999986 56554322 2456889999999
Q ss_pred ccCc
Q 040040 381 KDLA 384 (869)
Q Consensus 381 ~~~~ 384 (869)
++++
T Consensus 233 ~~N~ 236 (285)
T 1ozn_A 233 NDNP 236 (285)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9887
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=8.8e-14 Score=141.20 Aligned_cols=217 Identities=20% Similarity=0.177 Sum_probs=130.5
Q ss_pred CCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccc
Q 040040 274 PQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDL 353 (869)
Q Consensus 274 ~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l 353 (869)
..++.+|. ..++|++|+++++.++.+....+ ..+++|++|+++++..++.+ +...+..+++|++|++++|+.+
T Consensus 21 ~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~----~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 21 KDIQRIPS--LPPSTQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp CSCSSCCC--CCTTCCEEEEESCCCSEECTTTT----TTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTC
T ss_pred cCccccCC--CCCcccEEEEeCCcceEECHHHc----cCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCe
Confidence 33555554 34578888888887666544333 34778888888876556665 4344677788888888876667
Q ss_pred cccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCc
Q 040040 354 EGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFN 433 (869)
Q Consensus 354 ~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~ 433 (869)
+.+... ....+++|+.|+++++. ++.++. ...+++|
T Consensus 94 ~~i~~~--------~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L--------------------------------- 129 (239)
T 2xwt_C 94 TYIDPD--------ALKELPLLKFLGIFNTG-LKMFPD--LTKVYST--------------------------------- 129 (239)
T ss_dssp CEECTT--------SEECCTTCCEEEEEEEC-CCSCCC--CTTCCBC---------------------------------
T ss_pred eEcCHH--------HhCCCCCCCEEeCCCCC-Cccccc--ccccccc---------------------------------
Confidence 665422 13356667777776654 433332 1111111
Q ss_pred ccccccccEEEEeccCCcccccchhHHhhcCCcc-EEEEcccCCccccccccccCccccccccccccceeeccccccccc
Q 040040 434 EKSFCKLKLMEVIFCKSLWTIFPHNMFARFLKLQ-SLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTK 512 (869)
Q Consensus 434 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 512 (869)
..|+.|++++|..+.. ++...++.+++|+ +|++++ +.++.++... . ..++|++|++++++.++.
T Consensus 130 ----~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~------~---~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 130 ----DIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYN-NGFTSVQGYA------F---NGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp ----CSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCS-CCCCEECTTT------T---TTCEEEEEECTTCTTCCE
T ss_pred ----ccccEEECCCCcchhh-cCcccccchhcceeEEEcCC-CCCcccCHhh------c---CCCCCCEEEcCCCCCccc
Confidence 1233777776644544 3555566777788 888877 4455554311 1 226788888887655666
Q ss_pred ccccCCCCcccC-CCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecCCCCC
Q 040040 513 IWNKDPRGKLIF-PNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRDLPYL 578 (869)
Q Consensus 513 l~~~~p~~~~~l-~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 578 (869)
+ .+..+..+ ++|++|++++ +.++.+ |... +++|+.|++.++..|
T Consensus 195 i---~~~~~~~l~~~L~~L~l~~-N~l~~l-~~~~-----------------~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 195 I---DKDAFGGVYSGPSLLDVSQ-TSVTAL-PSKG-----------------LEHLKELIARNTWTL 239 (239)
T ss_dssp E---CTTTTTTCSBCCSEEECTT-CCCCCC-CCTT-----------------CTTCSEEECTTC---
T ss_pred C---CHHHhhccccCCcEEECCC-CccccC-ChhH-----------------hccCceeeccCccCC
Confidence 6 24556777 7888888887 567766 5322 678888888777643
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4e-13 Score=144.79 Aligned_cols=233 Identities=18% Similarity=0.176 Sum_probs=171.3
Q ss_pred CccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecC
Q 040040 130 GVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVES 209 (869)
Q Consensus 130 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~ 209 (869)
+++.++..+ .+++++|+++++ .++.++... +..+++|++|+|+++.-++.++.+. ...+++|+++.+.+
T Consensus 20 ~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~----f~~l~~L~~L~Ls~N~i~~~i~~~~--f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 20 KVTEIPSDL----PRNAIELRFVLT-KLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRIEK 88 (350)
T ss_dssp TCCSCCTTC----CTTCSEEEEESC-CCSEECTTS----STTCTTCCEEEEECCTTCCEECTTS--BCSCTTCCEEEEEE
T ss_pred CCCccCcCc----CCCCCEEEccCC-cCCCcCHHH----HcCCCCCCEEECcCCCCCCccChhH--hhcchhhhhhhccc
Confidence 344554433 468999999998 788888643 3688999999999985455565543 23678888877777
Q ss_pred CCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccccc--cc-CC
Q 040040 210 CEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSV--VA-FP 286 (869)
Q Consensus 210 c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~-l~ 286 (869)
+.+++.+++ ..++.+++|++|+++++. +..++.. ......++..|++.++..+..++.. .. ..
T Consensus 89 ~N~l~~l~~-~~f~~l~~L~~L~l~~n~-l~~~~~~------------~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 89 ANNLLYINP-EAFQNLPNLQYLLISNTG-IKHLPDV------------HKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp ETTCCEECT-TSBCCCTTCCEEEEEEEC-CSSCCCC------------TTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred CCcccccCc-hhhhhccccccccccccc-cccCCch------------hhcccchhhhhhhccccccccccccchhhcch
Confidence 778988876 578999999999999875 5555521 1223557788888888777776642 22 34
Q ss_pred CcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccccccccccc
Q 040040 287 NLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEE 366 (869)
Q Consensus 287 ~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~ 366 (869)
.++.|++++|.++.+....+. ..+|++|.+.+++.++.+ |...++.+++|++|+++++ .++.++.
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~-----~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N-~l~~lp~-------- 219 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFN-----GTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRT-RIHSLPS-------- 219 (350)
T ss_dssp SCEEEECCSSCCCEECTTSST-----TEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTS-CCCCCCS--------
T ss_pred hhhhhccccccccCCChhhcc-----ccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCC-CcCccCh--------
Confidence 688999999988876554443 568999999988888887 6566788999999999985 6777643
Q ss_pred ccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 367 RKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 367 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
..|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred ---hhhccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 2577888888888888888874 34577888887754
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=4.5e-13 Score=144.36 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=91.5
Q ss_pred ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhcc-CCccEEEEeccccccccccccc
Q 040040 283 VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSF-VQLQHLEIRKCMDLEGIVFPEE 361 (869)
Q Consensus 283 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~~L~l~~c~~l~~i~~~~~ 361 (869)
..+++|++|++++|.+..+....+. ...++..|++.++..+..+.+ ..+..+ ..++.|+++++ .++.+...
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~----~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N-~i~~i~~~-- 172 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKI----HSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKN-GIQEIHNS-- 172 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTC----CBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSS-CCCEECTT--
T ss_pred hhccccccccccccccccCCchhhc----ccchhhhhhhccccccccccc-cchhhcchhhhhhccccc-cccCCChh--
Confidence 3456666777766665443322222 245677777777777776633 333333 45777777773 56655432
Q ss_pred cccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccCCccccccccccCCCceEeeeeccCccccccccc
Q 040040 362 MIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKCPELKAFILQNINTDMTVVGIQSFFNEKSFCKLK 441 (869)
Q Consensus 362 ~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 441 (869)
....++|+.|.+.++..++.++.+.+..+++|+.|+++++ +++.+|. +.+.+|+
T Consensus 173 -------~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~------------------~~~~~L~ 226 (350)
T 4ay9_X 173 -------AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS------------------YGLENLK 226 (350)
T ss_dssp -------SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS------------------SSCTTCC
T ss_pred -------hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh------------------hhhccch
Confidence 2244567777777766777777766666677777777653 4555543 2256666
Q ss_pred EEEEeccCCcccccchhHHhhcCCccEEEEcc
Q 040040 442 LMEVIFCKSLWTIFPHNMFARFLKLQSLIVGA 473 (869)
Q Consensus 442 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 473 (869)
+|.+.++..++. +|. +..+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~-lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKK-LPT--LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCC-CCC--TTTCCSCCEEECSC
T ss_pred HhhhccCCCcCc-CCC--chhCcChhhCcCCC
Confidence 666666666654 343 45566777776654
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.45 E-value=5.1e-14 Score=149.57 Aligned_cols=216 Identities=16% Similarity=0.090 Sum_probs=117.5
Q ss_pred cccccceeecccccccccccccCCCCcccCCCccEEEEecCCCcccccCccEEEEEeccCCCCCcceeeccccceEeecC
Q 040040 495 AVSRLRELHVFCLPKLTKIWNKDPRGKLIFPNLVLVRIFECQRLKSIFPTSVEIVANDVRGNDAATKFIFPSLTFLKLRD 574 (869)
Q Consensus 495 ~~~~L~~L~l~~~~~L~~l~~~~p~~~~~l~~L~~L~l~~c~~L~~l~p~s~ei~~~~~~~~~~~~~~~~~~L~~L~l~~ 574 (869)
.+++|++|+++++ +++.+ .|..+..+++|++|++++| .+..+.| + ..+++|++|++++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~---------------~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQI---SAADLAPFTKLELLNLSSN-VLYETLD--L---------------ESLSTLRTLDLNN 89 (317)
T ss_dssp TGGGCSEEECTTS-CCCCC---CHHHHTTCTTCCEEECTTS-CCEEEEE--E---------------TTCTTCCEEECCS
T ss_pred cCCCCCEEECcCC-ccCcC---CHHHhhCCCcCCEEECCCC-cCCcchh--h---------------hhcCCCCEEECcC
Confidence 4567777777774 44444 2345667777777777763 3443311 1 1134455555544
Q ss_pred CCCCceecCCCCCCCCCCCceeeeccccCccccccceeeEeeecceeccccceeeeecccceeeeccccccceEEEeecC
Q 040040 575 LPYLTTFYSGMHTLECPERANLIFQLKNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQFHKLKILHFISD 654 (869)
Q Consensus 575 ~~~l~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~ 654 (869)
+ .+..++. .++|++|++++|.+..+....+++|+.|++++|
T Consensus 90 n-------------------------~l~~l~~--------------~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 90 N-------------------------YVQELLV--------------GPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp S-------------------------EEEEEEE--------------CTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred C-------------------------ccccccC--------------CCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence 3 3333221 356666666666666655555666666666444
Q ss_pred CCccchHHHHHhccccceEEEEEEecccccccccEEEcCccccccccccCCCCCcc-cccCCccEEEEecccchhhcccc
Q 040040 655 GSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLD-SFLQNLEFLEVKECALSLISLRI 733 (869)
Q Consensus 655 ~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~-~~l~~L~~L~l~~c~~~l~~l~~ 733 (869)
....++...+..+++ |+.|+++++ .++ .+ .+... ..+++|++|++++|. +..++.
T Consensus 131 ~l~~~~~~~~~~l~~-----------------L~~L~Ls~N-~l~-~~---~~~~~~~~l~~L~~L~L~~N~--l~~~~~ 186 (317)
T 3o53_A 131 KITMLRDLDEGCRSR-----------------VQYLDLKLN-EID-TV---NFAELAASSDTLEHLNLQYNF--IYDVKG 186 (317)
T ss_dssp CCCSGGGBCTGGGSS-----------------EEEEECTTS-CCC-EE---EGGGGGGGTTTCCEEECTTSC--CCEEEC
T ss_pred CCCCccchhhhccCC-----------------CCEEECCCC-CCC-cc---cHHHHhhccCcCCEEECCCCc--Cccccc
Confidence 444443322333333 333333332 111 11 01111 234555555555554 555444
Q ss_pred eeEecccchhccccCCCcceeecCCeeeeCCCcceEeeccCCCccccCCCCcCCCcceEEEccCCC
Q 040040 734 EIVFSKLKWLFLESSGSITSFCSGNYAISFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 734 ~~~~~~L~~L~l~~l~~l~~~~~~~~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~~ 799 (869)
...+++|+.|++.++ +++.+... ...+++|+.|++++| .++.+|..+...++|+.|+++.|.
T Consensus 187 ~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 444555555555543 23333332 335688999999999 667888888888999999998654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=3.4e-12 Score=132.65 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=62.4
Q ss_pred ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCcc----EEEEecccccccccc
Q 040040 283 VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQ----HLEIRKCMDLEGIVF 358 (869)
Q Consensus 283 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~----~L~l~~c~~l~~i~~ 358 (869)
..+++|++|++++|.+..+ .+|..++.+++|++|++++| .++.+ +...+..+++|+ +|+++++ .++.+..
T Consensus 121 ~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~ 194 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP 194 (276)
T ss_dssp TTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT
T ss_pred ccCCCCCEEECcCCcccee---cCchhhccCCCCCEEECCCC-CCCcC-CHHHhhhhhhccccceeeecCCC-cccccCc
Confidence 4456666666666654321 13444555677777777764 34444 333345555555 6677664 4544432
Q ss_pred ccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 359 PEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 359 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
. .....+|+.|+++++. ++.++......+++|+.|++.+
T Consensus 195 ~---------~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 195 G---------AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp T---------SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred c---------ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 2 2233467777777765 6666665555677777777764
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=2.3e-12 Score=134.47 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=104.9
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..++++++++++++ +++.+|... .+.+++|+++++ .+..+.... ...+++|++|+++++. ++.+++
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~-------~~~l~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDL-------PKDTTILHLSEN-LLYTFSLAT--LMPYTRLTQLNLDRAE-LTKLQV-- 72 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCC-------CTTCCEEECTTS-CCSEEEGGG--GTTCTTCCEEECTTSC-CCEEEC--
T ss_pred cccCCccEEECCCC-CCCcCCCCC-------CCCCCEEEcCCC-cCCccCHHH--hhcCCCCCEEECCCCc-cCcccC--
Confidence 34566777777665 566665432 356777777766 455544332 3356777777777763 555543
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINS 298 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l 298 (869)
.+.+++|++|+++++. +..+| ..+..+++|++|+++++ .++.++. +..+++|++|++++|.+
T Consensus 73 -~~~l~~L~~L~Ls~N~-l~~l~-------------~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 73 -DGTLPVLGTLDLSHNQ-LQSLP-------------LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp -CSCCTTCCEEECCSSC-CSSCC-------------CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred -CCCCCcCCEEECCCCc-CCcCc-------------hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCC
Confidence 2566777777776653 44444 22334556666666553 2333332 34455666666666654
Q ss_pred cccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCcccee
Q 040040 299 ETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFL 378 (869)
Q Consensus 299 ~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L 378 (869)
..+....+ ..+++|+.|+++++ .++.+ +...+..+++|+.|+++++ .++.++.. ....++|+.|
T Consensus 137 ~~~~~~~~----~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~---------~~~~~~L~~l 200 (290)
T 1p9a_G 137 KTLPPGLL----TPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDTLLLQEN-SLYTIPKG---------FFGSHLLPFA 200 (290)
T ss_dssp CCCCTTTT----TTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT---------TTTTCCCSEE
T ss_pred CccChhhc----ccccCCCEEECCCC-cCCcc-CHHHhcCcCCCCEEECCCC-cCCccChh---------hcccccCCeE
Confidence 44322222 23556666666553 34444 3344455666666666653 34443321 2233455555
Q ss_pred ecccCc
Q 040040 379 KMKDLA 384 (869)
Q Consensus 379 ~l~~~~ 384 (869)
.+.+++
T Consensus 201 ~L~~Np 206 (290)
T 1p9a_G 201 FLHGNP 206 (290)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 555544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=3.6e-12 Score=131.87 Aligned_cols=173 Identities=18% Similarity=0.175 Sum_probs=85.4
Q ss_pred CccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcC
Q 040040 145 SLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRG 224 (869)
Q Consensus 145 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 224 (869)
+.+++++++. .++.+|... .+.+++|+++++ +++.++... .+.+++|++|+++++ .++.+++ ..+.+
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~-------~~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n-~l~~i~~-~~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNI-------PADTKKLDLQSN-KLSSLPSKA--FHRLTKLRLLYLNDN-KLQTLPA-GIFKE 83 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCC-------CTTCSEEECCSS-CCSCCCTTS--SSSCTTCCEEECCSS-CCSCCCT-TTTSS
T ss_pred CCCEEEccCC-CCCccCCCC-------CCCCCEEECcCC-CCCeeCHHH--hcCCCCCCEEECCCC-ccCeeCh-hhhcC
Confidence 3556666555 455554322 245666666666 455544332 335667777777666 3555543 34466
Q ss_pred CCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccccc
Q 040040 225 LPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSETIW 302 (869)
Q Consensus 225 L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~i~ 302 (869)
+++|++|+++++. +..++. ..+..+++|++|+++++. +..++. +..+++|++|++++|.+..+.
T Consensus 84 l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 84 LKNLETLWVTDNK-LQALPI------------GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp CTTCCEEECCSSC-CCCCCT------------TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCc-CCcCCH------------hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 6677777766653 333331 112334555555555432 222222 234455555555555544332
Q ss_pred cCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 303 HNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 303 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
... +..+++|++|+++++ .++.+ +...+..+++|++|+++++
T Consensus 150 ~~~----~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 150 KGV----FDKLTSLKELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTT----TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred HhH----ccCCcccceeEecCC-cCcEe-ChhHhccCCCcCEEECCCC
Confidence 221 223555555555553 33333 2233445555555555553
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=4.1e-12 Score=131.39 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=145.5
Q ss_pred CceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccccc
Q 040040 120 LEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESF 199 (869)
Q Consensus 120 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l 199 (869)
.+.+++++ ..++.++..+ .+++++|+++++ .+..++... +..+++|++|+++++ .++.++... ...+
T Consensus 18 ~~~l~~~~-~~l~~ip~~~----~~~l~~L~l~~n-~l~~~~~~~----~~~l~~L~~L~l~~n-~l~~i~~~~--~~~l 84 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNI----PADTKKLDLQSN-KLSSLPSKA----FHRLTKLRLLYLNDN-KLQTLPAGI--FKEL 84 (270)
T ss_dssp TTEEECTT-SCCSSCCSCC----CTTCSEEECCSS-CCSCCCTTS----SSSCTTCCEEECCSS-CCSCCCTTT--TSSC
T ss_pred CCEEEccC-CCCCccCCCC----CCCCCEEECcCC-CCCeeCHHH----hcCCCCCCEEECCCC-ccCeeChhh--hcCC
Confidence 45566665 3444444333 368999999998 677666432 467899999999998 677776553 2478
Q ss_pred CCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccc
Q 040040 200 LRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSF 279 (869)
Q Consensus 200 ~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 279 (869)
++|++|+++++. ++.+++ ..+.++++|++|+++++. +..++. ..+..+++|++|+++++ .+..+
T Consensus 85 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n-~l~~~ 148 (270)
T 2o6q_A 85 KNLETLWVTDNK-LQALPI-GVFDQLVNLAELRLDRNQ-LKSLPP------------RVFDSLTKLTYLSLGYN-ELQSL 148 (270)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCSSCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCEEECCCCc-CCcCCH-hHcccccCCCEEECCCCc-cCeeCH------------HHhCcCcCCCEEECCCC-cCCcc
Confidence 999999999984 777765 467899999999999865 555542 22456899999999986 46565
Q ss_pred cc--cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccc
Q 040040 280 CS--VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCM 351 (869)
Q Consensus 280 ~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 351 (869)
+. +..+++|++|++++|.+..+....+ ..+++|++|+++++ .++.+ +...+..+++|+.|++++++
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAF----DKLTELKTLKLDNN-QLKRV-PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTT----TTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHh----ccCCCcCEEECCCC-cCCcC-CHHHhccccCCCEEEecCCC
Confidence 54 5678999999999998776544333 34899999999986 66665 55567788999999998753
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.42 E-value=1.8e-12 Score=136.72 Aligned_cols=168 Identities=15% Similarity=0.227 Sum_probs=94.7
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..+++|++|+++++ .+..++. ...+++|++|+++++ .++.++. ...+++|++|++++|. ++.+ +
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~~------~~~l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIEG------VQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGNP-LKNV---S 101 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT------GGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSCC-CSCC---G
T ss_pred HHcCCcCEEEeeCC-CccCchh------hhccCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCCc-CCCc---h
Confidence 34678888888877 5555542 246777888888777 5555543 3467778888887774 6655 3
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~ 300 (869)
.+..+++|++|++++|. +..++ .+..+++|++|+++++ .+..++.+..+++|++|++++|.+..
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~--------------~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVT--------------PLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCG--------------GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhcCCCCCCEEECCCCC-CCCch--------------hhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCC
Confidence 56777777777777764 33333 1334566666666554 24444444455555555555554333
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
+.. +..+++|+.|++++| .++.+.+ +..+++|++|+++++
T Consensus 166 ~~~------l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 166 LTP------LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN 205 (308)
T ss_dssp CGG------GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS
T ss_pred Chh------hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC
Confidence 211 233455555555543 2333311 344555555555543
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=4.9e-13 Score=150.50 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=31.5
Q ss_pred cccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCc-cccccccccCccccccccccccceeecccc
Q 040040 437 FCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSL-EEIFNLQELNSEETHSGAVSRLRELHVFCL 507 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (869)
+++|+.|++++|. +.. +|.. +..+++|+.|+++++... ..++... ..++.|+.+.+..+
T Consensus 213 l~~L~~L~Ls~N~-l~~-lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~---------~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVL-IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF---------SKNQRVQTVAKQTV 272 (487)
T ss_dssp GTTCSEEECTTSC-CCE-ECTT-CCCCTTCCEEECTTCCBCHHHHHHHH---------TTCHHHHHHHHHHH
T ss_pred CCCccEEEecCCc-Ccc-cchh-hccCCCCCEEEcCCCCCcCcchHHHH---------HhCCCCcEEecccc
Confidence 4566666666654 333 3443 456677777777775433 1222211 24566666666543
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=1.2e-13 Score=148.29 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=45.6
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccc--cccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEK--ISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
+++++|++.++ .+...+.. ...+++|++|+++++. +.. ++.. ...+++|++|++++|. ++...+ ..
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-----~~~~~~L~~L~L~~~~-l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~-~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-----HFSPFRVQHMDLSNSV-IEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIV-NT 137 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-----CCCCBCCCEEECTTCE-ECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHH-HH
T ss_pred ccceEEEcCCc-cccccchh-----hccCCCCCEEEccCCC-cCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHH-HH
Confidence 66777777766 33332222 1356677777777662 332 2211 3456677777777663 432211 24
Q ss_pred hcCCCCCcEEEEeecCCc
Q 040040 222 SRGLPQLQTIKVTACKNM 239 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l 239 (869)
++.+++|++|++++|..+
T Consensus 138 l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp HTTCTTCSEEECTTCBSC
T ss_pred HhcCCCCCEEECCCCCCC
Confidence 556666666666666433
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=9.3e-13 Score=148.23 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=27.1
Q ss_pred eCCCcceEeeccCCCccccCCCCcCCCcceEEEccCCC
Q 040040 762 SFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 762 ~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~~ 799 (869)
.+++|+.|++++| .+..+|.++...+.|+.+++++|.
T Consensus 212 ~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 212 SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 4567788888887 455677777777888888887554
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=4.7e-12 Score=133.51 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=151.4
Q ss_pred HhccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccc
Q 040040 116 QLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLR 195 (869)
Q Consensus 116 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 195 (869)
.+++++.|++.++ .+..+. .+ ..+++|++|+++++ .+..++. ...+++|++|+++++ .++.++.
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~--~~l~~L~~L~L~~n-~i~~~~~------~~~l~~L~~L~L~~n-~l~~~~~---- 102 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GV--QYLNNLIGLELKDN-QITDLAP------LKNLTKITELELSGN-PLKNVSA---- 102 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TG--GGCTTCCEEECCSS-CCCCCGG------GTTCCSCCEEECCSC-CCSCCGG----
T ss_pred HcCCcCEEEeeCC-CccCch-hh--hccCCCCEEEccCC-cCCCChh------HccCCCCCEEEccCC-cCCCchh----
Confidence 4689999999885 444432 33 67899999999998 6666654 368999999999998 5777642
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
...+++|++|++++|. ++.++ .+..+++|++|+++++. +..++ .+..+++|++|+++++ .
T Consensus 103 ~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~--------------~l~~l~~L~~L~l~~n-~ 162 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQ-ITDVT---PLAGLSNLQVLYLDLNQ-ITNIS--------------PLAGLTNLQYLSIGNA-Q 162 (308)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG---GGTTCTTCCEEECCSSC-CCCCG--------------GGGGCTTCCEEECCSS-C
T ss_pred hcCCCCCCEEECCCCC-CCCch---hhcCCCCCCEEECCCCc-cCcCc--------------cccCCCCccEEEccCC-c
Confidence 5689999999999995 77763 48899999999999975 55554 2456899999999986 5
Q ss_pred cccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccc
Q 040040 276 LRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEG 355 (869)
Q Consensus 276 l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~ 355 (869)
+..++.+..+++|++|++++|.+..+.. +..+++|++|++++| .++.+.+ +..+++|+.|+++++ .++.
T Consensus 163 l~~~~~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 163 VSDLTPLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEE-EEEC
T ss_pred CCCChhhcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCC-eeec
Confidence 6667767889999999999998665432 456899999999996 5666532 688999999999996 3444
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=2.1e-13 Score=146.41 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=58.3
Q ss_pred CccEEEEecCCCceecCCCCCCCCCCCC--CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 145 SLKLLHIQNNPYLLCINDSTELVPRDAF--PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 145 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~--~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++.++++++ .+. +.. ...+ +.++.|++.++ .+.+.+.. ...+++|++|++++|. +........+
T Consensus 48 ~~~~l~l~~~-~~~--~~~-----~~~~~~~~l~~L~l~~n-~l~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~~~ 114 (336)
T 2ast_B 48 LWQTLDLTGK-NLH--PDV-----TGRLLSQGVIAFRCPRS-FMDQPLAE---HFSPFRVQHMDLSNSV-IEVSTLHGIL 114 (336)
T ss_dssp TSSEEECTTC-BCC--HHH-----HHHHHHTTCSEEECTTC-EECSCCCS---CCCCBCCCEEECTTCE-ECHHHHHHHH
T ss_pred hheeeccccc-cCC--HHH-----HHhhhhccceEEEcCCc-cccccchh---hccCCCCCEEEccCCC-cCHHHHHHHH
Confidence 3677777765 221 100 1233 67778887776 44444332 3467778888887774 4432011356
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
+.+++|++|++++|..-...+ ..+..+++|++|++++|..+.
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~-------------~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIV-------------NTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHH-------------HHHTTCTTCSEEECTTCBSCC
T ss_pred hhCCCCCEEeCcCcccCHHHH-------------HHHhcCCCCCEEECCCCCCCC
Confidence 677777777777764221222 233345666666666654443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=9.6e-12 Score=129.78 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=125.1
Q ss_pred CCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccc
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGRED 249 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~ 249 (869)
..+++++++++.+. +++.+|.+ -.+++++|+++++. ++.+++ ..+.++++|++|+++++. +..++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~-----~~~~l~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~----- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPD-----LPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQV----- 72 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSC-----CCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECTTSC-CCEEEC-----
T ss_pred cccCCccEEECCCC-CCCcCCCC-----CCCCCCEEEcCCCc-CCccCH-HHhhcCCCCCEEECCCCc-cCcccC-----
Confidence 46778888988876 67777654 34788999998884 666654 468888999999998865 555552
Q ss_pred ccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCc
Q 040040 250 DINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLK 328 (869)
Q Consensus 250 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~ 328 (869)
...+++|++|+++++ .+..++. ...+++|++|++++|.++.+.... +..+++|++|+++++ .++
T Consensus 73 ---------~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N-~l~ 137 (290)
T 1p9a_G 73 ---------DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGN-ELK 137 (290)
T ss_dssp ---------CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTS-CCC
T ss_pred ---------CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCC-CCC
Confidence 134777888888774 3445543 345677777777777765543322 334677777777764 455
Q ss_pred cccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 329 FLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 329 ~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
.+ +...+..+++|+.|+++++ .++.++.. ....+++|+.|+++++. ++.++.+.. ..++|+.+.+.+
T Consensus 138 ~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~--------~~~~l~~L~~L~L~~N~-l~~ip~~~~-~~~~L~~l~L~~ 204 (290)
T 1p9a_G 138 TL-PPGLLTPTPKLEKLSLANN-NLTELPAG--------LLNGLENLDTLLLQENS-LYTIPKGFF-GSHLLPFAFLHG 204 (290)
T ss_dssp CC-CTTTTTTCTTCCEEECTTS-CCSCCCTT--------TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCCCSEEECCS
T ss_pred cc-ChhhcccccCCCEEECCCC-cCCccCHH--------HhcCcCCCCEEECCCCc-CCccChhhc-ccccCCeEEeCC
Confidence 54 4455566777777777764 45554332 12346677777777664 555554432 234555555544
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=3.9e-12 Score=131.68 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=106.6
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..+++|+.|.+.++ .++.++. ...+++|++|+++++ .++.++ ..+.+++|++|++++| .++.+++ .
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~~------l~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~L~~n-~l~~~~~-~ 103 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQG------IQYLPNVRYLALGGN-KLHDIS----ALKELTNLTYLILTGN-QLQSLPN-G 103 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCTT------GGGCTTCCEEECTTS-CCCCCG----GGTTCTTCCEEECTTS-CCCCCCT-T
T ss_pred ccccceeeeeeCCC-Ccccccc------cccCCCCcEEECCCC-CCCCch----hhcCCCCCCEEECCCC-ccCccCh-h
Confidence 34567777777776 4444432 245777777777776 455543 1446777777777777 4666654 3
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINS 298 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l 298 (869)
.++++++|++|++++|. +..++. ..+..+++|++|+++++ .+..++. +..+++|++|++++|.+
T Consensus 104 ~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQ-LQSLPD------------GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HhcCCcCCCEEECCCCc-CCccCH------------HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence 46777777777777764 444431 12344667777777665 3444443 34567777777777765
Q ss_pred cccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 299 ETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 299 ~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
..+.. ..++.+++|++|++++| .++.+ +...+..+++|+.|+++++
T Consensus 170 ~~~~~----~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 170 QSLPE----GVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCCCT----TTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCH----HHhcCCccCCEEECCCC-cCCcc-CHHHHhCCcCCCEEEccCC
Confidence 54322 22334677777777775 45554 3344566777777777775
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=1.2e-11 Score=128.44 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=141.7
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhc
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISR 223 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~ 223 (869)
++|++|+++++ .++.++... +..+++|++|+++++ .++.++... .+.+++|++|+++++. ++.+++ ..+.
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS----FFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGNP-IQSLAL-GAFS 97 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT----TTTCTTCSEEECTTC-CCCEECTTT--TTTCTTCCEEECTTCC-CCEECT-TTTT
T ss_pred CCccEEECCCC-cccccCHhH----hccccCCcEEECCCC-cCCccCHHH--ccCCcCCCEEECCCCc-cCccCh-hhhc
Confidence 57999999888 677776432 367889999999988 677666543 3478999999999984 777654 4688
Q ss_pred CCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc--cc-ccccCCCcCEEEeccccccc
Q 040040 224 GLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FC-SVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 224 ~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~-~~~~l~~L~~L~L~~~~l~~ 300 (869)
++++|++|+++++. +..++. ..+..+++|++|+++++. +.. ++ .+..+++|++|++++|.+..
T Consensus 98 ~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 98 GLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCTTCCEEECTTSC-CCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCccccEEECCCCC-ccccCc------------hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCc
Confidence 89999999998865 444431 234568899999998854 333 22 35678999999999998766
Q ss_pred cccCCCCCcccccCCce----EEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccc
Q 040040 301 IWHNQLPAMSSCIQNLT----RLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLN 376 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~ 376 (869)
+....+ ..+++|+ +|+++++ .++.+ +...+ ...+|++|+++++ .++.++.. ....+++|+
T Consensus 164 ~~~~~~----~~l~~L~~l~l~L~ls~n-~l~~~-~~~~~-~~~~L~~L~L~~n-~l~~~~~~--------~~~~l~~L~ 227 (276)
T 2z62_A 164 IYCTDL----RVLHQMPLLNLSLDLSLN-PMNFI-QPGAF-KEIRLKELALDTN-QLKSVPDG--------IFDRLTSLQ 227 (276)
T ss_dssp ECGGGG----HHHHTCTTCCEEEECCSS-CCCEE-CTTSS-CSCCEEEEECCSS-CCSCCCTT--------TTTTCCSCC
T ss_pred CCHHHh----hhhhhccccceeeecCCC-ccccc-Ccccc-CCCcccEEECCCC-ceeecCHh--------Hhccccccc
Confidence 533322 2345555 7888874 56665 33322 3458999999986 47665432 235688999
Q ss_pred eeecccCc
Q 040040 377 FLKMKDLA 384 (869)
Q Consensus 377 ~L~l~~~~ 384 (869)
.|++++++
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 99999876
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=7.4e-13 Score=140.21 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=26.5
Q ss_pred CCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcccc-Chh-hHhccCCccEEEEecc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLF-STS-LVRSFVQLQHLEIRKC 350 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~-~~~~L~~L~~L~l~~c 350 (869)
++|++|++++|.+..+.. ..++.+++|++|+++++....... +.. .++.+++|++|+++++
T Consensus 149 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp TTCCEEEEESCSCCCCCT----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCcEEEeeCCCCccchH----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 455555555555433221 222335555666655543221110 001 0144555555655554
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.31 E-value=2e-11 Score=126.29 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=46.7
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccc
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMI 363 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~ 363 (869)
.+++|++|++++|.+..+... .++.+++|++|++++| .++.+ +...++.+++|++|++++| .++.++..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~---- 175 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYN-QLQSLPEG---- 175 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT----
T ss_pred CCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCC-CcCccCHH----
Confidence 344455555555443322111 1223455555555554 33333 2233445555555555554 33333211
Q ss_pred cccccccccCccceeecccCccccccCCCcccCCCCccEEEEcc
Q 040040 364 EEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAK 407 (869)
Q Consensus 364 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~ 407 (869)
....+++|+.|+++++. ++.++......+++|+.|++.+
T Consensus 176 ----~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 176 ----VFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ----TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ----HhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccC
Confidence 12344555555555543 4444433333344455555444
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=6.1e-12 Score=133.11 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCCccEEEEecCCCce-ecCCCCCCCCCCCCCCccEeecccccccccccccccccccc-----CCCCEEEecCCCCCcc
Q 040040 142 GFPSLKLLHIQNNPYLL-CINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESF-----LRLRNLKVESCEKLTH 215 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~-~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l-----~~L~~L~L~~c~~l~~ 215 (869)
.+++|++|+++++ .+. .++..+. ...+++|++|+++++ .+++++.. .+.+ ++|++|+++++. +..
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~---~~~l~~~~~~~L~~L~L~~N~-l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLL---EATGPDLNILNLRNV-SWATRDAW---LAELQQWLKPGLKVLSIAQAH-SLN 163 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSS---SCCSCCCSEEEEESC-BCSSSSSH---HHHHHTTCCTTCCEEEEESCS-CCC
T ss_pred CcCCccEEEccCC-cccchhHHHHH---HhcCCCccEEEccCC-CCcchhHH---HHHHHHhhcCCCcEEEeeCCC-Ccc
Confidence 4678888888887 343 3443220 146777888888776 45554321 2233 777777777774 666
Q ss_pred cCChhhhcCCCCCcEEEEeecCC
Q 040040 216 IFSFSISRGLPQLQTIKVTACKN 238 (869)
Q Consensus 216 l~~~~~~~~L~~L~~L~l~~c~~ 238 (869)
+++ ..++++++|++|+++++..
T Consensus 164 ~~~-~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 164 FSC-EQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCT-TTCCCCSSCCEEECCSCTT
T ss_pred chH-HHhccCCCCCEEECCCCCc
Confidence 654 4667777777777777653
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=1e-10 Score=119.36 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
+.+++|+++++ .+..++... .+.+++|++|+++++ .++.+++ ..+.++++|++|+++++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT--FRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANN 93 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred CCCCEEEccCC-CcCccCHhH--hcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCC
Confidence 45555555555 344433322 234555555555555 3444433 23455555555555554
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=1.1e-10 Score=121.72 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=98.9
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.+++|++|+++++ .++.++. ...+++|++|+++++ .++.++. ...+++|++|++++|. ++.+ +.
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~------~~~l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~---~~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG------IQYLPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDENK-VKDL---SS 107 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCCG---GG
T ss_pred hcCcccEEEccCC-CcccChh------HhcCCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCCc-CCCC---hh
Confidence 3566777777666 4554432 245677777777766 4555432 3467777777777763 5554 24
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccccccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETI 301 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i 301 (869)
++.+++|++|++++|. +..++ .+..+++|++|+++++ .+..++.+..+++|++|++++|.+..+
T Consensus 108 l~~l~~L~~L~L~~n~-i~~~~--------------~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNG-ISDIN--------------GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp GTTCTTCCEEECTTSC-CCCCG--------------GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEECCCCc-CCCCh--------------hhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccc
Confidence 6677777777777654 33332 2334666666666664 344445555666777777777765443
Q ss_pred ccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 302 WHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 302 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
.. +..+++|+.|++++| .++.+ + .+..+++|+.|+++++
T Consensus 172 ~~------l~~l~~L~~L~L~~N-~i~~l-~--~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 172 VP------LAGLTKLQNLYLSKN-HISDL-R--ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GG------GTTCTTCCEEECCSS-CCCBC-G--GGTTCTTCSEEEEEEE
T ss_pred hh------hcCCCccCEEECCCC-cCCCC-h--hhccCCCCCEEECcCC
Confidence 21 344667777777664 45554 2 2566777777777764
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=1e-10 Score=122.06 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=84.3
Q ss_pred CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccc
Q 040040 171 AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDD 250 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 250 (869)
.+++|++|+++++ .++.++. .+.+++|++|++++| +++.+++ +.++++|++|+++++. +..++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~----~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~------- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG----IQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLS------- 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGG-------
T ss_pred hcCcccEEEccCC-CcccChh----HhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCCh-------
Confidence 4566777777776 4555432 346777777777777 3555532 6677777777777654 33333
Q ss_pred cCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccc
Q 040040 251 INNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFL 330 (869)
Q Consensus 251 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 330 (869)
.+..+++|++|+++++ .+..++.+..+++|++|++++|.+..+ ..+..+++|+.|++++| .++.+
T Consensus 107 -------~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N-~l~~~ 171 (291)
T 1h6t_A 107 -------SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN-QISDI 171 (291)
T ss_dssp -------GGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS-CCCCC
T ss_pred -------hhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCC-ccccc
Confidence 2344666677776664 344455555666666666666654443 12334566666666654 34443
Q ss_pred cChhhHhccCCccEEEEecc
Q 040040 331 FSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 331 ~~~~~~~~L~~L~~L~l~~c 350 (869)
.+ +..+++|++|+++++
T Consensus 172 ~~---l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 172 VP---LAGLTKLQNLYLSKN 188 (291)
T ss_dssp GG---GTTCTTCCEEECCSS
T ss_pred hh---hcCCCccCEEECCCC
Confidence 22 455666666666654
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=1e-10 Score=134.12 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=112.3
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..+++|+.|+++++ .+..++. +..+++|+.|+|+++ .+..++. ...+++|++|+|++| .+..++
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~------l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~--- 103 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG------IQYLPNVTKLFLNGN-KLTDIKP----LTNLKNLGWLFLDEN-KIKDLS--- 103 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT------GGGCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSS-CCCCCT---
T ss_pred hcCCCCCEEECcCC-CCCCChH------HccCCCCCEEEeeCC-CCCCChh----hccCCCCCEEECcCC-CCCCCh---
Confidence 45678888888877 5665542 256788888888887 5665543 447888888888888 466653
Q ss_pred hhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccc
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSET 300 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~ 300 (869)
.+..+++|++|++++|. +..++ .+..+++|+.|+++++ .+..++.+..+++|+.|+|++|.+..
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~l~--------------~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISDIN--------------GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCCCG--------------GGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred hhccCCCCCEEEecCCC-CCCCc--------------cccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCC
Confidence 57778888888888765 33333 3445777888887775 35555666677777777777776544
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
+.. +..+++|+.|++++| .+..+ + .+..+++|+.|++++|
T Consensus 168 ~~~------l~~l~~L~~L~Ls~N-~i~~l-~--~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 168 IVP------LAGLTKLQNLYLSKN-HISDL-R--ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CGG------GTTCTTCCEEECCSS-CCCBC-G--GGTTCTTCSEEECCSE
T ss_pred chh------hccCCCCCEEECcCC-CCCCC-h--HHccCCCCCEEEccCC
Confidence 321 345677777777775 45554 2 2566777777777775
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.16 E-value=2.9e-10 Score=115.94 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=101.1
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccC
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDIN 252 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~ 252 (869)
...+++++++. .++.+|.+ -.+++++|+++++. +..+++ ..++++++|++|+++++. +..++.
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~-----~~~~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-------- 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSG-----IPADTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSA-------- 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSC-----CCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT--------
T ss_pred CCCeEEecCCC-CccccCCC-----CCCCCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCCc-CCccCH--------
Confidence 34667777766 66666654 23688999998884 666655 467888899999988864 444441
Q ss_pred CccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccc
Q 040040 253 NTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFL 330 (869)
Q Consensus 253 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 330 (869)
..+..+++|++|+++++. +..++. +..+++|++|++++|.+..+.... +..+++|++|+++++ .++.+
T Consensus 77 ----~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N-~l~~~ 146 (251)
T 3m19_A 77 ----GVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTN-QLQSI 146 (251)
T ss_dssp ----TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSS-CCCCC
T ss_pred ----hHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCC-cCCcc
Confidence 123456777777776643 444332 245566666666666654432221 233566666666654 44544
Q ss_pred cChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 331 FSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 331 ~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
+...++.+++|++|+++++ .++.++.. ....+++|+.|++++++
T Consensus 147 -~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 -PAGAFDKLTNLQTLSLSTN-QLQSVPHG--------AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -CTTTTTTCTTCCEEECCSS-CCSCCCTT--------TTTTCTTCCEEECCSCC
T ss_pred -CHHHcCcCcCCCEEECCCC-cCCccCHH--------HHhCCCCCCEEEeeCCc
Confidence 3334555666666666663 34433221 12345555555555554
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=1.6e-10 Score=112.94 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhh
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSI 221 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~ 221 (869)
.+++|++|+++++ .+..++ . ...+++|++|+++++ .++.++ ....+++|++|++++|. ++...+ ..
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~-----l~~l~~L~~L~l~~n-~~~~~~----~l~~l~~L~~L~l~~n~-l~~~~~-~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-G-----IEYAHNIKDLTINNI-HATNYN----PISGLSNLERLRIMGKD-VTSDKI-PN 107 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-T-----GGGCTTCSEEEEESC-CCSCCG----GGTTCTTCCEEEEECTT-CBGGGS-CC
T ss_pred hcCCccEEeccCC-CccChH-H-----HhcCCCCCEEEccCC-CCCcch----hhhcCCCCCEEEeECCc-cCcccC-hh
Confidence 3556666666665 444443 1 135566666666665 343332 13356666666666653 443211 24
Q ss_pred hcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEecccc
Q 040040 222 SRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAIN 297 (869)
Q Consensus 222 ~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~ 297 (869)
++.+++|++|++++|......+ ..+..+++|++|++++|..+..++.+..+++|++|++++|.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~-------------~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSIL-------------TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGH-------------HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred hcCCCCCCEEEecCCccCcHhH-------------HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 5566666666666654221122 22334555555555555444444444444555555555544
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=123.28 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCC-CCCCCccEeecccccccccccc--ccccccccCCCCEEEecCCCCCcccCCh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPR-DAFPLLESLSLSNLMNLEKISC--SQLRAESFLRLRNLKVESCEKLTHIFSF 219 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~~--~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 219 (869)
+++|++|+++++.-....+..+ . ..+++|++|+++++ .+..... .......+++|++|++++|. +..+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~----~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~- 162 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLP----LEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSC- 162 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCS----SSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCT-
T ss_pred cCceeEEEeeCCEeccchhhhh----hhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhH-
Confidence 3567777777773222222211 1 45677777777776 3332110 00112356777777777764 555543
Q ss_pred hhhcCCCCCcEEEEeecCCcee--eeccccccccCCccccccccCCcccEEeccCCCCcccccc-----cccCCCcCEEE
Q 040040 220 SISRGLPQLQTIKVTACKNMKV--IFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-----VVAFPNLETLK 292 (869)
Q Consensus 220 ~~~~~L~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~l~~L~~L~ 292 (869)
..++.+++|++|+++++..... ++.. .....+++|++|+++++. ++.++. ...+++|++|+
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAA-----------LCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTT-----------SCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEE
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHH-----------HhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEE
Confidence 3566677777777776653211 1100 011235566666666542 333332 13445566666
Q ss_pred ecccccc
Q 040040 293 LSAINSE 299 (869)
Q Consensus 293 L~~~~l~ 299 (869)
+++|.+.
T Consensus 231 Ls~N~l~ 237 (310)
T 4glp_A 231 LSHNSLR 237 (310)
T ss_dssp CTTSCCC
T ss_pred CCCCCCC
Confidence 6655533
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.12 E-value=4.7e-12 Score=138.55 Aligned_cols=193 Identities=13% Similarity=0.049 Sum_probs=92.8
Q ss_pred CCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccc--cccc-ccccc----ccccccCCCCEEEecCCCCCc
Q 040040 142 GFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLM--NLEK-ISCSQ----LRAESFLRLRNLKVESCEKLT 214 (869)
Q Consensus 142 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~--~l~~-l~~~~----~~~~~l~~L~~L~L~~c~~l~ 214 (869)
.+++|++|++++| .+.......-......+++|++|+++++. .+.. ++.+. .....+++|++|++++|. +.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 4566777777766 33221000000012456677777777651 1111 11110 001356778888887774 44
Q ss_pred c-----cCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccC---------CcccEEeccCCCCc-ccc
Q 040040 215 H-----IFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEF---------SQLRKLTLKSLPQL-RSF 279 (869)
Q Consensus 215 ~-----l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~l-~~~ 279 (869)
. ++ ..+..+++|++|++++|.. ......... ..+..+ ++|++|+++++.-- ..+
T Consensus 108 ~~~~~~l~--~~l~~~~~L~~L~L~~n~l-~~~~~~~l~--------~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 108 PTAQEPLI--DFLSKHTPLEHLYLHNNGL-GPQAGAKIA--------RALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp TTTHHHHH--HHHHHCTTCCEEECCSSCC-HHHHHHHHH--------HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred HHHHHHHH--HHHHhCCCCCEEECcCCCC-CHHHHHHHH--------HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 3 21 2566777888888877653 211100000 011112 66777777665421 122
Q ss_pred c----ccccCCCcCEEEeccccccccccC-CCCCcccccCCceEEEEecCCCC-----ccccChhhHhccCCccEEEEec
Q 040040 280 C----SVVAFPNLETLKLSAINSETIWHN-QLPAMSSCIQNLTRLIVHGCNNL-----KFLFSTSLVRSFVQLQHLEIRK 349 (869)
Q Consensus 280 ~----~~~~l~~L~~L~L~~~~l~~i~~~-~~~~~~~~l~~L~~L~l~~c~~l-----~~l~~~~~~~~L~~L~~L~l~~ 349 (869)
+ .+..+++|++|++++|.+...... ..+..+..+++|++|++++|. + ..+ + ..+..+++|++|++++
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l-~-~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL-A-IALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH-H-HHGGGCTTCCEEECTT
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH-H-HHHccCCCcCEEECCC
Confidence 2 123456777777777664421000 011123446677777776654 3 222 2 2345666777777766
Q ss_pred c
Q 040040 350 C 350 (869)
Q Consensus 350 c 350 (869)
|
T Consensus 254 n 254 (386)
T 2ca6_A 254 C 254 (386)
T ss_dssp C
T ss_pred C
Confidence 5
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.10 E-value=2.5e-10 Score=130.97 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=79.6
Q ss_pred HhccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccc
Q 040040 116 QLKGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLR 195 (869)
Q Consensus 116 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 195 (869)
.+++++.|.+.++. +..+ +.+ ..+++|++|++++| .+..++. +..+++|+.|+|+++ .+..++.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l-~~l--~~l~~L~~L~Ls~N-~l~~~~~------l~~l~~L~~L~Ls~N-~l~~l~~---- 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV-QGI--QYLPNVTKLFLNGN-KLTDIKP------LTNLKNLGWLFLDEN-KIKDLSS---- 104 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC-TTG--GGCTTCCEEECTTS-CCCCCGG------GGGCTTCCEEECCSS-CCCCCTT----
T ss_pred cCCCCCEEECcCCC-CCCC-hHH--ccCCCCCEEEeeCC-CCCCChh------hccCCCCCEEECcCC-CCCCChh----
Confidence 34555555555422 2222 122 34555666666555 3333322 235555666666555 3444331
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
...+++|++|++++|. +..+ +.+..+++|+.|++++|. +..++ .+..+++|+.|+++++.
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~--------------~l~~l~~L~~L~Ls~N~- 164 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDIT--------------VLSRLTKLDTLSLEDNQ- 164 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCG--------------GGGSCTTCSEEECCSSC-
T ss_pred hccCCCCCEEEecCCC-CCCC---ccccCCCccCEEECCCCc-cCCch--------------hhcccCCCCEEECcCCc-
Confidence 3355556666665553 4443 235555566666665543 22221 23345555666555542
Q ss_pred cccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecC
Q 040040 276 LRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGC 324 (869)
Q Consensus 276 l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c 324 (869)
+..++.+..+++|+.|+|++|.+..+ +. +..+++|+.|++++|
T Consensus 165 l~~~~~l~~l~~L~~L~Ls~N~i~~l-----~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 165 ISDIVPLAGLTKLQNLYLSKNHISDL-----RA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCBC-----GG-GTTCTTCSEEECCSE
T ss_pred CCCchhhccCCCCCEEECcCCCCCCC-----hH-HccCCCCCEEEccCC
Confidence 33333345555566666655554432 11 233555556655554
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.8e-10 Score=121.60 Aligned_cols=203 Identities=19% Similarity=0.185 Sum_probs=121.6
Q ss_pred CCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCC-h--hhhcCCCCCcEEEEeecCCceeeeccccc
Q 040040 172 FPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFS-F--SISRGLPQLQTIKVTACKNMKVIFEVGRE 248 (869)
Q Consensus 172 ~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~--~~~~~L~~L~~L~l~~c~~l~~l~~~~~~ 248 (869)
+++|++|+++++ .+.+.....+..+.+++|++|+++++. +....+ . ..+..+++|++|+++++.. ..++.
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~---- 162 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSC---- 162 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCT----
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhH----
Confidence 456888888887 444332222100567888888888875 443211 1 1335688888888887763 33331
Q ss_pred cccCCccccccccCCcccEEeccCCCCccc--cc---ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEec
Q 040040 249 DDINNTEVIDKIEFSQLRKLTLKSLPQLRS--FC---SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHG 323 (869)
Q Consensus 249 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~---~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~ 323 (869)
..+..+++|++|+++++.-... ++ ....+++|++|++++|.++.+... .....+.+++|++|++++
T Consensus 163 --------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 163 --------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp --------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTT
T ss_pred --------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCC
Confidence 2344578888888888653221 11 124677888888888875432111 011134567888888887
Q ss_pred CCCCccccChhhHhcc---CCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCCcccCCCCc
Q 040040 324 CNNLKFLFSTSLVRSF---VQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSL 400 (869)
Q Consensus 324 c~~l~~l~~~~~~~~L---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L 400 (869)
+ .++...|.. +..+ ++|++|+++++ .++.++.. .+++|+.|+++++. ++.++. ...+++|
T Consensus 234 N-~l~~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~~-----------~~~~L~~L~Ls~N~-l~~~~~--~~~l~~L 296 (310)
T 4glp_A 234 N-SLRATVNPS-APRCMWSSALNSLNLSFA-GLEQVPKG-----------LPAKLRVLDLSSNR-LNRAPQ--PDELPEV 296 (310)
T ss_dssp S-CCCCCCCSC-CSSCCCCTTCCCEECCSS-CCCSCCSC-----------CCSCCSCEECCSCC-CCSCCC--TTSCCCC
T ss_pred C-CCCccchhh-HHhccCcCcCCEEECCCC-CCCchhhh-----------hcCCCCEEECCCCc-CCCCch--hhhCCCc
Confidence 5 455543322 2333 68888888875 56655322 34788888888775 666644 3457888
Q ss_pred cEEEEcc
Q 040040 401 KQLRMAK 407 (869)
Q Consensus 401 ~~L~l~~ 407 (869)
+.|++.+
T Consensus 297 ~~L~L~~ 303 (310)
T 4glp_A 297 DNLTLDG 303 (310)
T ss_dssp SCEECSS
T ss_pred cEEECcC
Confidence 8888866
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=2.6e-11 Score=132.69 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=25.9
Q ss_pred cccccEEEEeccCCccc----ccchhHHhhcCCccEEEEcccC
Q 040040 437 FCKLKLMEVIFCKSLWT----IFPHNMFARFLKLQSLIVGACG 475 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~----~~~~~~~~~l~~L~~L~l~~c~ 475 (869)
+++|++|++++|. +.. .+|.....++++|++|++++|.
T Consensus 273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 5778888887775 433 2455554667888888888854
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=8.6e-10 Score=107.76 Aligned_cols=127 Identities=9% Similarity=0.125 Sum_probs=66.6
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
.+.+++|++|+++++ .++.++ .+..+++|++|++++| .+..++ .+..+++|++|+++++.
T Consensus 40 ~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~~--------------~l~~l~~L~~L~l~~n~- 99 (197)
T 4ezg_A 40 EAQMNSLTYITLANI-NVTDLT---GIEYAHNIKDLTINNI-HATNYN--------------PISGLSNLERLRIMGKD- 99 (197)
T ss_dssp HHHHHTCCEEEEESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCCG--------------GGTTCTTCCEEEEECTT-
T ss_pred hhhcCCccEEeccCC-CccChH---HHhcCCCCCEEEccCC-CCCcch--------------hhhcCCCCCEEEeECCc-
Confidence 347888899999887 466664 5778888888888887 333332 23345666666665533
Q ss_pred ccc--ccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEec
Q 040040 276 LRS--FCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRK 349 (869)
Q Consensus 276 l~~--~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 349 (869)
+.. ...+..+++|++|++++|.+... .+..++.+++|++|++++|..++.+ + .+..+++|++|++++
T Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~-~--~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 100 VTSDKIPNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDI-M--PLKTLPELKSLNIQF 168 (197)
T ss_dssp CBGGGSCCCTTCTTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCC-G--GGGGCSSCCEEECTT
T ss_pred cCcccChhhcCCCCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCcccc-H--hhcCCCCCCEEECCC
Confidence 222 22334445555555555543221 1111223444555555444333333 1 134444444444444
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.04 E-value=1.7e-09 Score=122.63 Aligned_cols=180 Identities=18% Similarity=0.212 Sum_probs=107.9
Q ss_pred cCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccc
Q 040040 119 GLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAES 198 (869)
Q Consensus 119 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~ 198 (869)
+++.|+++++ .+..++..+ +++|++|++++| .++.+| ..+++|++|+++++ +++.++. +.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l----~~~L~~L~Ls~N-~l~~ip--------~~l~~L~~L~Ls~N-~l~~ip~--l~--- 119 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL----PPQITVLEITQN-ALISLP--------ELPASLEYLDACDN-RLSTLPE--LP--- 119 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC----CTTCSEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCSCCCC--CC---
T ss_pred CccEEEeCCC-CCCccCHhH----cCCCCEEECcCC-CCcccc--------cccCCCCEEEccCC-CCCCcch--hh---
Confidence 6778888764 344443322 467888888887 566555 24678888888877 5666554 11
Q ss_pred cCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccc
Q 040040 199 FLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRS 278 (869)
Q Consensus 199 l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 278 (869)
.+|++|++++| +++.+|. .+++|++|+++++. +..+|. .+++|++|+++++. +..
T Consensus 120 -~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~----------------~l~~L~~L~Ls~N~-L~~ 174 (571)
T 3cvr_A 120 -ASLKHLDVDNN-QLTMLPE-----LPALLEYINADNNQ-LTMLPE----------------LPTSLEVLSVRNNQ-LTF 174 (571)
T ss_dssp -TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSCCCC----------------CCTTCCEEECCSSC-CSC
T ss_pred -cCCCEEECCCC-cCCCCCC-----cCccccEEeCCCCc-cCcCCC----------------cCCCcCEEECCCCC-CCC
Confidence 27888888877 4666543 57788888887764 444551 25677777777753 555
Q ss_pred ccccccCCCcCEEEeccccccccccCCCCC-cccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecc
Q 040040 279 FCSVVAFPNLETLKLSAINSETIWHNQLPA-MSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 279 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 350 (869)
+|.+ . ++|+.|+|++|.++.+.. ++. .....+.|+.|++++| .++.+ |.. +..+++|+.|+++++
T Consensus 175 lp~l-~-~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~l-p~~-l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 175 LPEL-P-ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCREN-RITHI-PEN-ILSLDPTCTIILEDN 240 (571)
T ss_dssp CCCC-C-TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSS-CCCCC-CGG-GGGSCTTEEEECCSS
T ss_pred cchh-h-CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCC-cceec-CHH-HhcCCCCCEEEeeCC
Confidence 5552 2 677777777777554322 211 0001112277777664 45554 433 344777777777764
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=5.8e-10 Score=114.35 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=41.7
Q ss_pred CcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCc
Q 040040 263 SQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQL 342 (869)
Q Consensus 263 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 342 (869)
++|++|+++++ .+..++.+..+++|++|++++|.++.+ + .++.+++|+.|+++++ .++.+ ..+..+++|
T Consensus 106 ~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L 174 (263)
T 1xeu_A 106 ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSI-----V-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKV 174 (263)
T ss_dssp SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBC-----G-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCC
T ss_pred CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCCC-----h-HHccCCCCCEEECCCC-cCcch---HHhccCCCC
Confidence 44444444443 233344445556666666666654443 1 1344666677776664 34443 235667777
Q ss_pred cEEEEecc
Q 040040 343 QHLEIRKC 350 (869)
Q Consensus 343 ~~L~l~~c 350 (869)
+.|+++++
T Consensus 175 ~~L~l~~N 182 (263)
T 1xeu_A 175 NWIDLTGQ 182 (263)
T ss_dssp CEEEEEEE
T ss_pred CEEeCCCC
Confidence 77777764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.95 E-value=3.5e-09 Score=108.55 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCC
Q 040040 262 FSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQ 341 (869)
Q Consensus 262 l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 341 (869)
+++|++|+++++ .++.++.... ++|++|++++|.++.+ + .+..+++|+.|+++++ .++.+ + .+..+++
T Consensus 84 l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~-----~-~l~~l~~L~~L~Ls~N-~i~~~-~--~l~~l~~ 151 (263)
T 1xeu_A 84 LTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNNELRDT-----D-SLIHLKNLEILSIRNN-KLKSI-V--MLGFLSK 151 (263)
T ss_dssp CSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSSCCSBS-----G-GGTTCTTCCEEECTTS-CCCBC-G--GGGGCTT
T ss_pred CCCCCEEECCCC-ccCCcCcccc-CcccEEEccCCccCCC-----h-hhcCcccccEEECCCC-cCCCC-h--HHccCCC
Confidence 444455554443 2333333333 5566666665554432 1 1233555666666553 34443 1 2455556
Q ss_pred ccEEEEeccccccccccccccccccccccccCccceeecccCc
Q 040040 342 LQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLA 384 (869)
Q Consensus 342 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 384 (869)
|+.|+++++ .++.+ . ....+++|+.|++++++
T Consensus 152 L~~L~L~~N-~i~~~-~---------~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 152 LEVLDLHGN-EITNT-G---------GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCEEECTTS-CCCBC-T---------TSTTCCCCCEEEEEEEE
T ss_pred CCEEECCCC-cCcch-H---------HhccCCCCCEEeCCCCc
Confidence 666666553 33333 0 13345556666655544
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=2e-10 Score=124.15 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=51.7
Q ss_pred CCcCEEEeccccccccccCCCCCcccccC-CceEEEEecCCCCccccChh---hHhcc-CCccEEEEecccccccccccc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQ-NLTRLIVHGCNNLKFLFSTS---LVRSF-VQLQHLEIRKCMDLEGIVFPE 360 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~---~~~~L-~~L~~L~l~~c~~l~~i~~~~ 360 (869)
++|++|++++|.+.......++..+..++ +|++|++++| .++...+.. .+... ++|++|++++|. +......
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~- 214 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYA- 214 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHH-
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHH-
Confidence 35666666666544221112222222233 6666666665 343332211 12233 467777776652 3321000
Q ss_pred ccccccccccc-cCccceeecccCccccccCC----CcccCCCCccEEEEccCC
Q 040040 361 EMIEEERKDIV-FPQLNFLKMKDLAKLTRFCS----GNCIELPSLKQLRMAKCP 409 (869)
Q Consensus 361 ~~~~~~~~~~~-~~~L~~L~l~~~~~L~~l~~----~~~~~l~~L~~L~l~~c~ 409 (869)
.-...... .++|++|+++++. +...+. .....+++|+.|++.+|.
T Consensus 215 ---~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 215 ---ELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp ---HHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ---HHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 00000112 2467777777664 433322 112345667777776653
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.92 E-value=1.8e-09 Score=122.46 Aligned_cols=180 Identities=16% Similarity=0.072 Sum_probs=113.0
Q ss_pred cccceEeecCCCCCceecCCCCCCCCCCCceeeecc-ccCccccccceeeEeeecceeccccceeeeecccceeeecccc
Q 040040 565 PSLTFLKLRDLPYLTTFYSGMHTLECPERANLIFQL-KNPSFGSKSLVMLLCLIGQQVFPNLEELTLSKYIFTTWRQAQF 643 (869)
Q Consensus 565 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 643 (869)
.+|+.|+++++. ++.++... .++|+.|++++ ++..+| . .+++|++|++++|.+.+++. ..
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l----~~~L~~L~Ls~N~l~~ip-~------------~l~~L~~L~Ls~N~l~~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL----PPQITVLEITQNALISLP-E------------LPASLEYLDACDNRLSTLPE-LP 119 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC----CTTCSEEECCSSCCSCCC-C------------CCTTCCEEECCSSCCSCCCC-CC
T ss_pred CCccEEEeCCCC-CCccCHhH----cCCCCEEECcCCCCcccc-c------------ccCCCCEEEccCCCCCCcch-hh
Confidence 489999999874 55666543 37899999999 888777 2 36899999999999988665 44
Q ss_pred ccceEEEeecCCCccchHHHHHhccccceEEEEEEecccccccccEEEcCccccccccccCCCCCcccccCCccEEEEec
Q 040040 644 HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLKVEEHAEGIAQIKSLKLNKLWFIKEHLWNPDSKLDSFLQNLEFLEVKE 723 (869)
Q Consensus 644 ~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~L~~L~l~~~~~L~~~l~~~~~~~~~~l~~L~~L~l~~ 723 (869)
.+|+.|++++|....+|. .+++|+.|++ +++ .++ .++ . .+++|+.|++++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L-----------------s~N-~l~-~lp----~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE----LPALLEYINA-----------------DNN-QLT-MLP----E---LPTSLEVLSVRN 169 (571)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEEC-----------------CSS-CCS-CCC----C---CCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCCCCC----cCccccEEeC-----------------CCC-ccC-cCC----C---cCCCcCEEECCC
Confidence 489999996666666774 4555555554 442 122 221 1 345555555555
Q ss_pred ccchhhcccceeEecccchhccccCCCcceeecCC--eeeeCCCcceEeeccCCCccccCCCCcCCCcceEEEccCCC
Q 040040 724 CALSLISLRIEIVFSKLKWLFLESSGSITSFCSGN--YAISFPSLEVLIVENCPKLNTFSAGVLKTPRLRAVQNWKLD 799 (869)
Q Consensus 724 c~~~l~~l~~~~~~~~L~~L~l~~l~~l~~~~~~~--~~~~~~~L~~L~i~~c~~~~~~~~~~~~~~~L~~l~~s~~~ 799 (869)
|. +..+|. . .++|+.|++.++ +++.++.-. .....+.|+.|++++| .++.+|.++...++|+.|++++|.
T Consensus 170 N~--L~~lp~-l-~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 170 NQ--LTFLPE-L-PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SC--CSCCCC-C-CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CC--CCCcch-h-hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 54 555554 2 245555555443 233332200 0001123388888888 666788888888888888888443
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.90 E-value=8.4e-09 Score=101.70 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccccc
Q 040040 172 FPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDI 251 (869)
Q Consensus 172 ~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 251 (869)
.++|++|+++++ +++.++... .+.+++|++|+++++ +++.+++ ..+..+++|++|+++++. +..++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGV--FDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTNQ-LQSLPN------- 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-------
T ss_pred CCCCcEEEcCCC-ccCcCChhh--hcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCCc-CCccCH-------
Confidence 345666666655 444443322 234556666666555 3444433 234555555555555543 222220
Q ss_pred CCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCcccc
Q 040040 252 NNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLF 331 (869)
Q Consensus 252 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 331 (869)
.. +..+++|++|++++|.+..+... .+..+++|++|+++++ .++.+
T Consensus 94 -----~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~- 139 (208)
T 2o6s_A 94 -----GV-----------------------FDKLTQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQN-QLKSV- 139 (208)
T ss_dssp -----TT-----------------------TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCSCC-
T ss_pred -----hH-----------------------hcCccCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCC-cccee-
Confidence 00 23345555555555554432221 1233566666666664 34443
Q ss_pred ChhhHhccCCccEEEEecc
Q 040040 332 STSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 332 ~~~~~~~L~~L~~L~l~~c 350 (869)
+...+..+++|++|+++++
T Consensus 140 ~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTTTTTCTTCCEEECCSC
T ss_pred CHHHhccCCCccEEEecCC
Confidence 3344556666777766664
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.88 E-value=1.3e-08 Score=101.03 Aligned_cols=59 Identities=12% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
+.+++|+++++ +++.++... ...+++|++|+++++. ++.+.+ ..+.++++|++|+++++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~--~~~l~~L~~L~Ls~N~-i~~~~~-~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGA--FSPYKKLRRIDLSNNQ-ISELAP-DAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTS--STTCTTCCEEECCSSC-CCEECT-TTTTTCSSCCEEECCSS
T ss_pred cCCCEEECCCC-cCCCcCHhH--hhCCCCCCEEECCCCc-CCCcCH-HHhhCCcCCCEEECCCC
Confidence 45555555555 444444322 2245555555555552 444422 24455555555555543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.88 E-value=1.3e-08 Score=101.12 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=36.4
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
++++++++ .++.+|.. ..+.+++|+++++ +++.++... ..+.+++|++|+++++. ++.+++ ..+++++
T Consensus 14 ~~l~~s~n-~l~~iP~~-------~~~~~~~L~L~~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~-i~~i~~-~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH-------IPQYTAELRLNNN-EFTVLEATG-IFKKLPQLRKINFSNNK-ITDIEE-GAFEGAS 81 (220)
T ss_dssp TEEECCSS-CCSSCCSC-------CCTTCSEEECCSS-CCCEECCCC-CGGGCTTCCEEECCSSC-CCEECT-TTTTTCT
T ss_pred CEeEeCCC-CcccCccC-------CCCCCCEEEcCCC-cCCccCchh-hhccCCCCCEEECCCCc-CCEECH-HHhCCCC
Confidence 35555554 44444432 1334555666555 444432110 02345555555555552 444433 2455555
Q ss_pred CCcEEEEeec
Q 040040 227 QLQTIKVTAC 236 (869)
Q Consensus 227 ~L~~L~l~~c 236 (869)
+|++|+++++
T Consensus 82 ~L~~L~Ls~N 91 (220)
T 2v70_A 82 GVNEILLTSN 91 (220)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555553
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.87 E-value=5.2e-10 Score=120.94 Aligned_cols=64 Identities=19% Similarity=-0.005 Sum_probs=28.5
Q ss_pred CCcCEEEeccccccccccCCCCCcccc-cCCceEEEEecCCCCccccC---hhhHhccCCccEEEEecc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSC-IQNLTRLIVHGCNNLKFLFS---TSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~-l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~~L~l~~c 350 (869)
++|++|+|++|.+.......++..+.. .++|++|++++| .++...+ ...+..+++|++|++++|
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 366666666665443211112222222 235666666654 3333211 111244556666666654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.86 E-value=1.1e-08 Score=110.30 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
++++++++ .++.+|.. ..+.++.|+++++ +++.++...+. ..+++|++|+++++ +++.+++ ..+.+++
T Consensus 21 ~~l~c~~~-~l~~iP~~-------~~~~l~~L~Ls~N-~l~~l~~~~~~-~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-------LPSYTALLDLSHN-NLSRLRAEWTP-TRLTNLHSLLLSHN-HLNFISS-EAFVPVP 88 (361)
T ss_dssp TEEECCSS-CCSSCCSS-------CCTTCSEEECCSS-CCCEECTTSSS-SCCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred CEEEeCCC-CcCccCcc-------CCCCCCEEECCCC-CCCccChhhhh-hcccccCEEECCCC-cCCccCh-hhccCCC
Confidence 45666655 56656542 2345777777776 56665544211 15677777777776 3666654 3566677
Q ss_pred CCcEEEEeecCCceeee
Q 040040 227 QLQTIKVTACKNMKVIF 243 (869)
Q Consensus 227 ~L~~L~l~~c~~l~~l~ 243 (869)
+|++|+++++. +..++
T Consensus 89 ~L~~L~Ls~N~-l~~~~ 104 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLD 104 (361)
T ss_dssp TCCEEECCSSC-CCEEC
T ss_pred CCCEEECCCCc-CCcCC
Confidence 77777776643 44444
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1.4e-08 Score=108.11 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCcc-EEEEeccccccccccccccc
Q 040040 285 FPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQ-HLEIRKCMDLEGIVFPEEMI 363 (869)
Q Consensus 285 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~-~L~l~~c~~l~~i~~~~~~~ 363 (869)
+++|++++|+++.+..+....+.. +++|+.+++.+ +++.+ +...+.++++|+ .+.+.+ .++.+...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~----~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~~~---- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQ----KKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAIEFG---- 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTT----CTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEECTT----
T ss_pred cCCCeEEECCCCCcceecHhhhhC----CCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEEchh----
Confidence 566666666666666555554443 66666666655 25554 445566666666 666655 44444221
Q ss_pred cccccccccCccceeecccCccccccCCCcccCCCCccEEE
Q 040040 364 EEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLR 404 (869)
Q Consensus 364 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~ 404 (869)
....+++|+.+++.+. +++.++...+..+++|+.++
T Consensus 292 ----aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 ----AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ----TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ----hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 2334566666666543 25566555555555555543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.83 E-value=1.9e-08 Score=108.51 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCccEEEEecCCCceecCCCCCCCCCC-CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 144 PSLKLLHIQNNPYLLCINDSTELVPRD-AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 144 ~~L~~L~l~~~~~l~~i~~~~~~~~~~-~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
+.+++|+++++ .++.++... +. .+++|++|+++++ +++.++... ...+++|++|+++++. ++.+++ ..+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~----~~~~l~~L~~L~L~~N-~i~~i~~~~--~~~l~~L~~L~Ls~N~-l~~~~~-~~~ 108 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEW----TPTRLTNLHSLLLSHN-HLNFISSEA--FVPVPNLRYLDLSSNH-LHTLDE-FLF 108 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTS----SSSCCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSSC-CCEECT-TTT
T ss_pred CCCCEEECCCC-CCCccChhh----hhhcccccCEEECCCC-cCCccChhh--ccCCCCCCEEECCCCc-CCcCCH-HHh
Confidence 44666666665 455554332 12 5566666666665 455554332 2356666666666653 555543 345
Q ss_pred cCCCCCcEEEEeecC
Q 040040 223 RGLPQLQTIKVTACK 237 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~ 237 (869)
.++++|++|+++++.
T Consensus 109 ~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 109 SDLQALEVLLLYNNH 123 (361)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCCcCCCEEECCCCc
Confidence 566666666666543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.81 E-value=5.2e-08 Score=96.76 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.++|++|+++++ .++.++... +..+++|++|+++++ .++.+.... ...+++|++|+++++ .++.+++ ..+
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~~~----~~~l~~L~~L~Ls~N-~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~-~~f 100 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPPGA----FSPYKKLRRIDLSNN-QISELAPDA--FQGLRSLNSLVLYGN-KITELPK-SLF 100 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTTS----STTCTTCCEEECCSS-CCCEECTTT--TTTCSSCCEEECCSS-CCCCCCT-TTT
T ss_pred CcCCCEEECCCC-cCCCcCHhH----hhCCCCCCEEECCCC-cCCCcCHHH--hhCCcCCCEEECCCC-cCCccCH-hHc
Confidence 378999999998 777776532 367899999999998 677664433 457999999999998 5888866 457
Q ss_pred cCCCCCcEEEEeecCCceeee
Q 040040 223 RGLPQLQTIKVTACKNMKVIF 243 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~ 243 (869)
.++++|++|+++++. +..++
T Consensus 101 ~~l~~L~~L~L~~N~-l~~~~ 120 (220)
T 2v9t_B 101 EGLFSLQLLLLNANK-INCLR 120 (220)
T ss_dssp TTCTTCCEEECCSSC-CCCCC
T ss_pred cCCCCCCEEECCCCC-CCEeC
Confidence 889999999999865 44443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.80 E-value=3.3e-08 Score=98.91 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=26.9
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEec
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRK 349 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 349 (869)
.+++|++|++++|.+.. +|..+..+++|++|+++++ .++.+ +...+..+++|+.|++.+
T Consensus 110 ~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQN-QLKSI-PHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECTT
T ss_pred cchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeC
Confidence 34455555555554332 2222334555555555552 34443 223344455555555554
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.79 E-value=4.3e-08 Score=98.06 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCcccEEeccCCCCccccc-ccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecC
Q 040040 262 FSQLRKLTLKSLPQLRSFC-SVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGC 324 (869)
Q Consensus 262 l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c 324 (869)
+++|++|+++++ .+..+| .+..+++|++|++++|.+..+.... +..+++|+.|++.++
T Consensus 111 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 111 LVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGA----FDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECTTS
T ss_pred chhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHH----HhCCCCCCEEEeeCC
Confidence 444444444442 233332 2334556666666666554432222 233667777777663
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.79 E-value=5.2e-08 Score=95.95 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=71.3
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
...++|++|+++++ .++.++... +..+++|++|+++++ +++.++... ...+++|++|+++++ +++.+++ .
T Consensus 25 ~~~~~l~~L~l~~n-~l~~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~-~ 94 (208)
T 2o6s_A 25 GIPAQTTYLDLETN-SLKSLPNGV----FDELTSLTQLYLGGN-KLQSLPNGV--FNKLTSLTYLNLSTN-QLQSLPN-G 94 (208)
T ss_dssp CCCTTCSEEECCSS-CCCCCCTTT----TTTCTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCT-T
T ss_pred CCCCCCcEEEcCCC-ccCcCChhh----hcccccCcEEECCCC-ccCccChhh--cCCCCCcCEEECCCC-cCCccCH-h
Confidence 34579999999998 677666533 367899999999998 677766543 347899999999999 4877765 4
Q ss_pred hhcCCCCCcEEEEeecCCceeee
Q 040040 221 ISRGLPQLQTIKVTACKNMKVIF 243 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~~l~~l~ 243 (869)
.++++++|++|+++++. +..++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~ 116 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLP 116 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCC
T ss_pred HhcCccCCCEEEcCCCc-CcccC
Confidence 57899999999999864 44444
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.79 E-value=5.3e-08 Score=96.72 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=75.7
Q ss_pred cEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCcc
Q 040040 176 ESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTE 255 (869)
Q Consensus 176 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 255 (869)
+++++++. .++.+|.. -...+++|+++++ .++.+++...++.+++|++|+++++. +..++.
T Consensus 14 ~~l~~s~n-~l~~iP~~-----~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~----------- 74 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH-----IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE----------- 74 (220)
T ss_dssp TEEECCSS-CCSSCCSC-----CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT-----------
T ss_pred CEeEeCCC-CcccCccC-----CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH-----------
Confidence 35555554 44444432 2334566666665 35555332345566666666666543 444431
Q ss_pred ccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccCh
Q 040040 256 VIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFST 333 (869)
Q Consensus 256 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 333 (869)
..+..+++|++|+++++. +..++. +..+++|++|++++|.+..+.... +..+++|++|+++++ .++.+ ++
T Consensus 75 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N-~l~~~-~~ 146 (220)
T 2v70_A 75 -GAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDN-QITTV-AP 146 (220)
T ss_dssp -TTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTS-CCCCB-CT
T ss_pred -HHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCC-cCCEE-CH
Confidence 123445666666666532 333332 345566666666666654432222 223566666666653 44444 22
Q ss_pred hhHhccCCccEEEEecc
Q 040040 334 SLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 334 ~~~~~L~~L~~L~l~~c 350 (869)
..+..+++|+.|+++++
T Consensus 147 ~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTTTCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEEecCc
Confidence 34556666666666653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.78 E-value=2.3e-10 Score=130.55 Aligned_cols=204 Identities=18% Similarity=0.158 Sum_probs=113.0
Q ss_pred CCCCCccEeeccccccccccccccccccccCCCCEEEecCCCC------------CcccCChhhhcCCCCCcEEEEeecC
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEK------------LTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~------------l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
...+.|+.|+++++ .++.+|.. ++.+++|+.|+++++.. ....++ ..++.+++|+.|+...+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~---i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSE---LESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHH---HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChh-hHHhhHHH---HHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhc
Confidence 35677778888876 56666655 66777888877755431 111111 245666666666622222
Q ss_pred CceeeeccccccccCCccccccccCCcccEEeccCCCCcccccccccCCCcCEEEeccccccccccCCCCCcccccCCce
Q 040040 238 NMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLT 317 (869)
Q Consensus 238 ~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~ 317 (869)
.+..++....... .... .....|+.|+++++ .++.+|.+..+++|+.|++++|.+.. +|..++.+++|+
T Consensus 421 ~~~~L~~l~l~~n----~i~~-l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~ 489 (567)
T 1dce_A 421 YLDDLRSKFLLEN----SVLK-MEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLE 489 (567)
T ss_dssp HHHHHHHHHHHHH----HHHH-HHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCC
T ss_pred ccchhhhhhhhcc----cccc-cCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccc-----cchhhhcCCCCC
Confidence 1222211000000 0000 01235777777764 46666666677777777777776553 344456677777
Q ss_pred EEEEecCCCCccccChhhHhccCCccEEEEeccccccccc-cccccccccccccccCccceeecccCccccccCCCc---
Q 040040 318 RLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIV-FPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGN--- 393 (869)
Q Consensus 318 ~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~--- 393 (869)
.|+++++ .++.+ | .++.+++|+.|+++++ .++.+. .. .+..+++|+.|++++++ ++.++...
T Consensus 490 ~L~Ls~N-~l~~l-p--~l~~l~~L~~L~Ls~N-~l~~~~~p~--------~l~~l~~L~~L~L~~N~-l~~~~~~~~~l 555 (567)
T 1dce_A 490 VLQASDN-ALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQ--------PLVSCPRLVLLNLQGNS-LCQEEGIQERL 555 (567)
T ss_dssp EEECCSS-CCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTG--------GGGGCTTCCEEECTTSG-GGGSSSCTTHH
T ss_pred EEECCCC-CCCCC-c--ccCCCCCCcEEECCCC-CCCCCCCcH--------HHhcCCCCCEEEecCCc-CCCCccHHHHH
Confidence 7777764 45554 3 3667777777777774 455542 11 24567777777777765 55554321
Q ss_pred ccCCCCccEE
Q 040040 394 CIELPSLKQL 403 (869)
Q Consensus 394 ~~~l~~L~~L 403 (869)
...+|+|+.|
T Consensus 556 ~~~lp~L~~L 565 (567)
T 1dce_A 556 AEMLPSVSSI 565 (567)
T ss_dssp HHHCTTCSEE
T ss_pred HHHCcccCcc
Confidence 1224555554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.76 E-value=2.1e-08 Score=94.99 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=39.4
Q ss_pred CCCccEEEEecCCCce--ecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 143 FPSLKLLHIQNNPYLL--CINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~--~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
.++|++|++++| .+. .++..+ ..+++|++|+++++ .++.+ . ..+.+++|++|++++|. ++..++ .
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~-----~~l~~L~~L~l~~n-~l~~~-~---~~~~l~~L~~L~Ls~N~-l~~~~~-~ 89 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLT-----AEFVNLEFLSLINV-GLISV-S---NLPKLPKLKKLELSENR-IFGGLD-M 89 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCC-----GGGGGCCEEEEESS-CCCCC-S---SCCCCSSCCEEEEESCC-CCSCCC-H
T ss_pred cccCCEEECCCC-CCChhhHHHHH-----HhCCCCCEEeCcCC-CCCCh-h---hhccCCCCCEEECcCCc-CchHHH-H
Confidence 355666666655 333 343322 34555555555555 34443 1 13345556666665553 444222 2
Q ss_pred hhcCCCCCcEEEEeec
Q 040040 221 ISRGLPQLQTIKVTAC 236 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c 236 (869)
.++.+++|++|+++++
T Consensus 90 ~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGN 105 (168)
T ss_dssp HHHHCTTCCEEECBSS
T ss_pred HHhhCCCCCEEeccCC
Confidence 3444555555555554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=2.5e-08 Score=94.51 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=74.2
Q ss_pred CCCCccEeecccccccc--ccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccc
Q 040040 171 AFPLLESLSLSNLMNLE--KISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGRE 248 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~--~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~ 248 (869)
..++|++|+++++ .+. .++.. ...+++|++|++++|. ++.+ ..++.+++|++|++++|.. ..
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~---~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l-~~------- 85 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGL---TAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRI-FG------- 85 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSC---CGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCC-CS-------
T ss_pred CcccCCEEECCCC-CCChhhHHHH---HHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcC-ch-------
Confidence 3456666666666 344 33322 3456666666666663 5544 2455666666666665542 22
Q ss_pred cccCCccccccccCCcccEEeccCCCCccccccc-ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCC
Q 040040 249 DDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCSV-VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNL 327 (869)
Q Consensus 249 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l 327 (869)
.++.. ..+++|++|++++|.+..+.. +..+..+++|++|++++| .+
T Consensus 86 -----------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N-~l 132 (168)
T 2ell_A 86 -----------------------------GLDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNC-EV 132 (168)
T ss_dssp -----------------------------CCCHHHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSS-GG
T ss_pred -----------------------------HHHHHHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCC-cC
Confidence 12221 125566666666665443211 022344777888888775 34
Q ss_pred ccccCh---hhHhccCCccEEEEecccccccc
Q 040040 328 KFLFST---SLVRSFVQLQHLEIRKCMDLEGI 356 (869)
Q Consensus 328 ~~l~~~---~~~~~L~~L~~L~l~~c~~l~~i 356 (869)
+.+ +. ..+..+++|++|++++|. ++++
T Consensus 133 ~~~-~~~~~~~~~~l~~L~~L~l~~n~-~~~~ 162 (168)
T 2ell_A 133 TNL-NDYRESVFKLLPQLTYLDGYDRE-DQEA 162 (168)
T ss_dssp GTS-TTHHHHHHTTCSSCCEETTEETT-SCBC
T ss_pred cch-HHHHHHHHHhCccCcEecCCCCC-hhhc
Confidence 444 32 356788888888888863 4444
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=4e-08 Score=104.45 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEec
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRK 349 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 349 (869)
+++|+.|.+.+ .++.+ +...+.++++|+.+++.+
T Consensus 100 ~~~L~~l~L~~--~i~~I-~~~aF~~~~~L~~l~l~~ 133 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNI-EDAAFKGCDNLKICQIRK 133 (329)
T ss_dssp CTTCCC-CBCT--TCCEE-CTTTTTTCTTCCEEEBCC
T ss_pred cCCCcEEECCc--cccch-hHHHhhcCcccceEEcCC
Confidence 66777777765 55555 445566777777777766
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=3e-08 Score=91.82 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=18.7
Q ss_pred ccCCceEEEEecCCCCccccC--hhhHhccCCccEEEEe
Q 040040 312 CIQNLTRLIVHGCNNLKFLFS--TSLVRSFVQLQHLEIR 348 (869)
Q Consensus 312 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~~L~l~ 348 (869)
.+++|++|++++| .++.+.+ ...+..+++|+.|+++
T Consensus 111 ~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 3555666666554 3344311 1345666666666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=3.6e-08 Score=91.28 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 171 AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
.+++|++|+++++ .++.+ . ..+.+++|++|++++|. ++...+ ..++.+++|++|+++++
T Consensus 40 ~l~~L~~L~l~~n-~l~~~-~---~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI-A---NLPKLNKLKKLELSDNR-VSGGLE-VLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC-T---TCCCCTTCCEEECCSSC-CCSCTH-HHHHHCTTCCEEECTTS
T ss_pred hcCCCcEEECcCC-CCCCc-h---hhhcCCCCCEEECCCCc-ccchHH-HHhhhCCCCCEEECCCC
Confidence 4445555555544 33333 1 12344555555555542 333111 23334555555555544
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=5.2e-08 Score=93.00 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=50.4
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChh
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFS 220 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 220 (869)
..+++|++|+++++ .++.++... ...++|++|+++++ .++.+ . . .+.+++|++|++++| .++.+++ .
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~~-----~~~~~L~~L~Ls~N-~l~~~-~-~--l~~l~~L~~L~Ls~N-~l~~~~~-~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENLG-----ATLDQFDAIDFSDN-EIRKL-D-G--FPLLRRLKTLLVNNN-RICRIGE-G 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCGG-----GGTTCCSEEECCSS-CCCEE-C-C--CCCCSSCCEEECCSS-CCCEECS-C
T ss_pred CCcCCceEEEeeCC-CCchhHHhh-----hcCCCCCEEECCCC-CCCcc-c-c--cccCCCCCEEECCCC-cccccCc-c
Confidence 34567777777776 555553211 22347777777776 55554 1 1 346777777777776 3666644 2
Q ss_pred hhcCCCCCcEEEEeecC
Q 040040 221 ISRGLPQLQTIKVTACK 237 (869)
Q Consensus 221 ~~~~L~~L~~L~l~~c~ 237 (869)
.++.+++|++|+++++.
T Consensus 83 ~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS 99 (176)
T ss_dssp HHHHCTTCCEEECCSCC
T ss_pred hhhcCCCCCEEECCCCc
Confidence 34667777777777654
No 125
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.61 E-value=3.3e-09 Score=120.96 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=65.5
Q ss_pred CCcchhHHHHhhhcCCChhhHHHHHHHhcCCCccchhhHHHHhhccceecccccCcccccchhe-----------ecccC
Q 040040 1 SPFLALTTITRALKNKSVPEWENVLQELQRPSMKNFQGVLKEACSTIELHYKYLKGEKLKKIFL-----------LCSCH 69 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lK~CFl-----------ycs~F 69 (869)
|+||||+++|+.|+.++ |+.+ +.+.+ ..++.. .++|.++|++||++||+ ++|.||+ |||+|
T Consensus 328 GlPLAl~~~g~~l~~~~---w~~~-~~l~~-~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~f 399 (549)
T 2a5y_B 328 GNPATLMMFFKSCEPKT---FEKM-AQLNN-KLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVM 399 (549)
T ss_dssp TCHHHHHHHHTTCCSSS---HHHH-HHHHH-HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSS
T ss_pred CChHHHHHHHHHhccch---HHHH-HHhHH-Hhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeee
Confidence 78999999999998873 5444 33332 111111 23588999999999985 8999999 99999
Q ss_pred CCc-------cccc--hhhhccc------------------cccc-c------cCCCchhHHHHHHhhhc
Q 040040 70 DPT-------QTCH--DIRDSAC------------------PLKR-C------LDKPQEKTNDISLKLNA 105 (869)
Q Consensus 70 ped-------w~~~--g~~~~~~------------------~~~~-~------~~~~~~~~r~l~~~~~~ 105 (869)
|++ |+|+ ||+.... .+.+ . ...+||.+|++|..++.
T Consensus 400 p~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 400 PPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp CTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred CCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 986 8999 7663211 0000 0 12478999999987664
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.54 E-value=1.5e-07 Score=89.86 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCcccEEeccCCCCcccccccccCC-CcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccC
Q 040040 262 FSQLRKLTLKSLPQLRSFCSVVAFP-NLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFV 340 (869)
Q Consensus 262 l~~L~~L~l~~~~~l~~~~~~~~l~-~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 340 (869)
+++|++|+++++ .+..++....+. +|+.|++++|.++.+ .. ++.+++|++|+++++ .++.+ +...+..++
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNN-RICRI-GEGLDQALP 88 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSS-CCCEE-CSCHHHHCT
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCC-ccccc-CcchhhcCC
Confidence 445555555554 233444333333 666666666665543 11 233666777777664 44554 334446666
Q ss_pred CccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCC---cccCCCCccEEEEccC
Q 040040 341 QLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSG---NCIELPSLKQLRMAKC 408 (869)
Q Consensus 341 ~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~---~~~~l~~L~~L~l~~c 408 (869)
+|++|+++++ .+..++... ....+++|+.|++++++ +..++.. ....+|+|+.|++.++
T Consensus 89 ~L~~L~L~~N-~i~~~~~~~-------~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNN-SLVELGDLD-------PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSC-CCCCGGGGG-------GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCC-cCCcchhhH-------hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777664 344433210 13456666677766665 4444332 1233555555555443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.47 E-value=8.1e-07 Score=85.96 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=42.4
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
++++++++ .++.+|.. .++.|++|+++++ .++.++.. ...+++|++|+++++ .++.+++ ..+.+++
T Consensus 13 ~~l~~~~~-~l~~ip~~-------~~~~l~~L~L~~n-~i~~ip~~---~~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG-------IPRDVTELYLDGN-QFTLVPKE---LSNYKHLTLIDLSNN-RISTLSN-QSFSNMT 78 (193)
T ss_dssp TEEECTTS-CCSSCCSC-------CCTTCCEEECCSS-CCCSCCGG---GGGCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CEEEcCCC-CCCcCCCC-------CCCCCCEEECCCC-cCchhHHH---hhcccCCCEEECCCC-cCCEeCH-hHccCCC
Confidence 34555444 45555432 2356666666665 45555422 345666666666666 3555543 3456666
Q ss_pred CCcEEEEeecC
Q 040040 227 QLQTIKVTACK 237 (869)
Q Consensus 227 ~L~~L~l~~c~ 237 (869)
+|++|+++++.
T Consensus 79 ~L~~L~Ls~N~ 89 (193)
T 2wfh_A 79 QLLTLILSYNR 89 (193)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 66666666643
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.41 E-value=1.3e-06 Score=84.49 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=38.4
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
++++++++ +++.+|... ++.+++|+++++ +++.++... ..+.+++|++|+++++ .++.+++ ..+++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~-------~~~l~~L~l~~n-~i~~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDI-------PLHTTELLLNDN-ELGRISSDG-LFGRLPHLVKLELKRN-QLTGIEP-NAFEGAS 78 (192)
T ss_dssp TEEECTTS-CCSSCCSCC-------CTTCSEEECCSC-CCCSBCCSC-SGGGCTTCCEEECCSS-CCCCBCT-TTTTTCT
T ss_pred CEEEcCCC-CcCcCccCC-------CCCCCEEECCCC-cCCccCCcc-ccccCCCCCEEECCCC-CCCCcCH-hHcCCcc
Confidence 45555554 455554322 235666666655 444443211 0234556666666555 2444433 2455555
Q ss_pred CCcEEEEeec
Q 040040 227 QLQTIKVTAC 236 (869)
Q Consensus 227 ~L~~L~l~~c 236 (869)
+|++|+++++
T Consensus 79 ~L~~L~Ls~N 88 (192)
T 1w8a_A 79 HIQELQLGEN 88 (192)
T ss_dssp TCCEEECCSC
T ss_pred cCCEEECCCC
Confidence 5555555554
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=2.9e-05 Score=84.26 Aligned_cols=212 Identities=11% Similarity=0.120 Sum_probs=119.9
Q ss_pred CCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 143 FPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 143 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
+..++.+.+.+ .++.|+... +.. .+|+.+.+.+ +++.+....+. . .+|+.+.+.+ .++.+.. ..+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~a----F~~-~~L~~i~l~~--~i~~I~~~aF~--~-~~L~~i~lp~--~l~~I~~-~aF 176 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDA----FRN-SQIAKVVLNE--GLKSIGDMAFF--N-STVQEIVFPS--TLEQLKE-DIF 176 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTT----TTT-CCCSEEECCT--TCCEECTTTTT--T-CCCCEEECCT--TCCEECS-STT
T ss_pred cCCccEEEECC--ccCEehHhh----ccc-CCccEEEeCC--CccEECHHhcC--C-CCceEEEeCC--CccEehH-HHh
Confidence 35666666654 456665443 223 2577777764 36666555443 2 3577777765 4666644 467
Q ss_pred cCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEeccccccc
Q 040040 223 RGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 223 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~l~~ 300 (869)
.++++|+.+++.+. .+..++.. .....+|+.+.+.. +++.+.. ...+++|+.+++..+ ++.
T Consensus 177 ~~c~~L~~l~l~~n-~l~~I~~~-------------aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 177 YYCYNLKKADLSKT-KITKLPAS-------------TFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp TTCTTCCEEECTTS-CCSEECTT-------------TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred hCcccCCeeecCCC-cceEechh-------------hEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccC
Confidence 77888888888653 35556522 12245667776643 2443332 345567777777653 444
Q ss_pred cccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccc-----ccccccccccccccccccCcc
Q 040040 301 IWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLE-----GIVFPEEMIEEERKDIVFPQL 375 (869)
Q Consensus 301 i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~-----~i~~~~~~~~~~~~~~~~~~L 375 (869)
+....+.. .+|+.+.+.+ .++.+ +...+.++++|+.+.+.+.. +. .+... ....+++|
T Consensus 240 I~~~aF~~-----~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~--------aF~~c~~L 302 (401)
T 4fdw_A 240 IGQEAFRE-----SGITTVKLPN--GVTNI-ASRAFYYCPELAEVTTYGST-FNDDPEAMIHPY--------CLEGCPKL 302 (401)
T ss_dssp ECTTTTTT-----CCCSEEEEET--TCCEE-CTTTTTTCTTCCEEEEESSC-CCCCTTCEECTT--------TTTTCTTC
T ss_pred cccccccc-----CCccEEEeCC--CccEE-ChhHhhCCCCCCEEEeCCcc-ccCCcccEECHH--------HhhCCccC
Confidence 44443332 4778887743 45655 44567778888888876631 11 11111 23355666
Q ss_pred ceeecccCccccccCCCcccCCCCccEEEE
Q 040040 376 NFLKMKDLAKLTRFCSGNCIELPSLKQLRM 405 (869)
Q Consensus 376 ~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l 405 (869)
+.+.+.+ +++.+....+..+++|+.+.+
T Consensus 303 ~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 303 ARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred CeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 7666663 366666665555566666665
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.39 E-value=1.9e-06 Score=83.38 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=40.1
Q ss_pred cEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeee
Q 040040 176 ESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIF 243 (869)
Q Consensus 176 ~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~ 243 (869)
+++++++. .++.+|.+ -.++|++|+++++ .++.+| ..+.++++|++|+++++. +..++
T Consensus 13 ~~l~~~~~-~l~~ip~~-----~~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~ 70 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG-----IPRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLS 70 (193)
T ss_dssp TEEECTTS-CCSSCCSC-----CCTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCC
T ss_pred CEEEcCCC-CCCcCCCC-----CCCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeC
Confidence 56677765 56666643 2468888888888 477765 377888888888888754 44443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.38 E-value=2.1e-06 Score=81.75 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=29.3
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
++|++|+++++ .++.++... .+.+++|++|+++++ .++.+++ ..++.+++|++|+++++
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGV--FDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCC-cccEeCHHH--hcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC
Confidence 45555555554 344433321 134555666666555 3554433 23455555555555554
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.38 E-value=1.5e-06 Score=84.01 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=77.8
Q ss_pred ceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccC
Q 040040 121 EELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFL 200 (869)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~ 200 (869)
+.+++++ .+++.++..+ ..+|++|+++++ .++.++... .+..+++|++|+++++ .++.+.... .+.++
T Consensus 11 ~~l~~s~-~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI----PLHTTELLLNDN-ELGRISSDG---LFGRLPHLVKLELKRN-QLTGIEPNA--FEGAS 78 (192)
T ss_dssp TEEECTT-SCCSSCCSCC----CTTCSEEECCSC-CCCSBCCSC---SGGGCTTCCEEECCSS-CCCCBCTTT--TTTCT
T ss_pred CEEEcCC-CCcCcCccCC----CCCCCEEECCCC-cCCccCCcc---ccccCCCCCEEECCCC-CCCCcCHhH--cCCcc
Confidence 4566665 3445554433 359999999998 677666431 1367899999999998 677764333 45799
Q ss_pred CCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceee
Q 040040 201 RLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVI 242 (869)
Q Consensus 201 ~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l 242 (869)
+|++|+++++ +++.+++ ..++++++|++|+++++. +..+
T Consensus 79 ~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~ 117 (192)
T 1w8a_A 79 HIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDNQ-ISCV 117 (192)
T ss_dssp TCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSSC-CCEE
T ss_pred cCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCee
Confidence 9999999999 4888765 457889999999999865 4433
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=2.1e-05 Score=85.34 Aligned_cols=238 Identities=13% Similarity=0.137 Sum_probs=148.6
Q ss_pred ccCceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccccccccccccccccc
Q 040040 118 KGLEELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAE 197 (869)
Q Consensus 118 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 197 (869)
..++...+-. .++.+....+ .++ +|+.+.+.+ +++.|+... +.. .+|+.+.+.+ +++.+....+ .
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF-~~~-~L~~i~l~~--~i~~I~~~a----F~~-~~L~~i~lp~--~l~~I~~~aF--~ 177 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAF-RNS-QIAKVVLNE--GLKSIGDMA----FFN-STVQEIVFPS--TLEQLKEDIF--Y 177 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTT-TTC-CCSEEECCT--TCCEECTTT----TTT-CCCCEEECCT--TCCEECSSTT--T
T ss_pred CCccEEEECC--ccCEehHhhc-ccC-CccEEEeCC--CccEECHHh----cCC-CCceEEEeCC--CccEehHHHh--h
Confidence 3444444432 3444443332 334 688888865 477777654 223 3688888875 5666665543 3
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+.+|+.+++.++ +++.++. ..+. ..+|+.+.+.. .++.+... ....+++|+.+.+.+ +++
T Consensus 178 ~c~~L~~l~l~~n-~l~~I~~-~aF~-~~~L~~l~lp~--~l~~I~~~------------aF~~~~~L~~l~l~~--~l~ 238 (401)
T 4fdw_A 178 YCYNLKKADLSKT-KITKLPA-STFV-YAGIEEVLLPV--TLKEIGSQ------------AFLKTSQLKTIEIPE--NVS 238 (401)
T ss_dssp TCTTCCEEECTTS-CCSEECT-TTTT-TCCCSEEECCT--TCCEECTT------------TTTTCTTCCCEECCT--TCC
T ss_pred CcccCCeeecCCC-cceEech-hhEe-ecccCEEEeCC--chheehhh------------HhhCCCCCCEEecCC--Ccc
Confidence 6888999999876 4777765 3444 57888888863 36666532 234467788888864 344
Q ss_pred ccccc-ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCC----CccccChhhHhccCCccEEEEecccc
Q 040040 278 SFCSV-VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNN----LKFLFSTSLVRSFVQLQHLEIRKCMD 352 (869)
Q Consensus 278 ~~~~~-~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~----l~~l~~~~~~~~L~~L~~L~l~~c~~ 352 (869)
.+... ..-.+|+.+.+. +.+..+....+.. +++|+.+.+.+... ...+ +...+.++++|+.+.+.+ +
T Consensus 239 ~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~----c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~ 310 (401)
T 4fdw_A 239 TIGQEAFRESGITTVKLP-NGVTNIASRAFYY----CPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--S 310 (401)
T ss_dssp EECTTTTTTCCCSEEEEE-TTCCEECTTTTTT----CTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--T
T ss_pred CccccccccCCccEEEeC-CCccEEChhHhhC----CCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--c
Confidence 43321 112678888884 3355555554543 88899998876321 1233 456678888999888874 4
Q ss_pred ccccccccccccccccccccCccceeecccCccccccCCCcccCCCCccEEEEccC
Q 040040 353 LEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSGNCIELPSLKQLRMAKC 408 (869)
Q Consensus 353 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~l~~L~~L~l~~c 408 (869)
++.+... ....+++|+.+.+.+ +++.+....+..+ +|+.+.+.+.
T Consensus 311 i~~I~~~--------aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 311 IRILGQG--------LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CCEECTT--------TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred eEEEhhh--------hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 5555322 244567888888854 4777877777777 8888888663
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.34 E-value=1.3e-07 Score=111.48 Aligned_cols=109 Identities=18% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccc
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGRED 249 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~ 249 (869)
..++.|++|+|+++ .+..++.. ...+++|++|+|++| .++.+|. .+++|++|++|+++++. +..+|
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~---~~~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N~-l~~lp------ 286 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISAN---IFKYDFLTRLYLNGN-SLTELPA--EIKNLSNLRVLDLSHNR-LTSLP------ 286 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGG---GGGCCSCSCCBCTTS-CCSCCCG--GGGGGTTCCEEECTTSC-CSSCC------
T ss_pred ccCCCCcEEECCCC-CCCCCChh---hcCCCCCCEEEeeCC-cCcccCh--hhhCCCCCCEEeCcCCc-CCccC------
Confidence 56788999999888 56666655 457889999999888 4777754 67889999999998876 55676
Q ss_pred ccCCccccccccCCcccEEeccCCCCcccccc-cccCCCcCEEEeccccccc
Q 040040 250 DINNTEVIDKIEFSQLRKLTLKSLPQLRSFCS-VVAFPNLETLKLSAINSET 300 (869)
Q Consensus 250 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~L~~~~l~~ 300 (869)
..+..+++|++|+++++ .+..+|. +..+++|++|+|++|.+..
T Consensus 287 -------~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 287 -------AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp -------SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred -------hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCC
Confidence 45667888999999886 4566664 6678899999999988553
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.33 E-value=3.2e-06 Score=80.52 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=38.3
Q ss_pred ccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeee
Q 040040 175 LESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIF 243 (869)
Q Consensus 175 L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~ 243 (869)
.+.+++++. +++.++.. ..++|++|+++++. ++.+++ ..++.+++|++|+++++. +..++
T Consensus 9 ~~~l~~~~~-~l~~~p~~-----~~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~ 68 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTG-----IPSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLP 68 (177)
T ss_dssp TTEEECCSS-CCSSCCTT-----CCTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSC-CCCCC
T ss_pred CCEEEecCC-CCccCCCC-----CCCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCCc-ceEeC
Confidence 355666655 45555533 34688888888874 666654 356778888888887754 44444
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=1.9e-06 Score=98.18 Aligned_cols=204 Identities=15% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccc----------cccccccccCCCCEEE-ecC
Q 040040 141 EGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKIS----------CSQLRAESFLRLRNLK-VES 209 (869)
Q Consensus 141 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~----------~~~~~~~~l~~L~~L~-L~~ 209 (869)
..+++|+.|+++++ .++.+|... +.+++|+.|+++++..+..++ ..+..++.+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i-----~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSEL-----ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHH-----HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChh-hHHhhHHHH-----HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh
Confidence 34677888888887 677777654 567888888886642111100 0011134567777776 332
Q ss_pred CCCCcccCCh----hhhcC--CCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCccccc-cc
Q 040040 210 CEKLTHIFSF----SISRG--LPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLRSFC-SV 282 (869)
Q Consensus 210 c~~l~~l~~~----~~~~~--L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~ 282 (869)
. .+..++.. ..+.. ...|++|+++++. +..+| .+..+++|+.|+++++ .++.+| .+
T Consensus 420 n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp--------------~~~~l~~L~~L~Ls~N-~l~~lp~~~ 482 (567)
T 1dce_A 420 A-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLC--------------HLEQLLLVTHLDLSHN-RLRALPPAL 482 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCC--------------CGGGGTTCCEEECCSS-CCCCCCGGG
T ss_pred c-ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCc--------------CccccccCcEeecCcc-cccccchhh
Confidence 2 22222110 00111 1257888888763 55555 2456778888888775 355554 35
Q ss_pred ccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccCCccEEEEecccccccccccccc
Q 040040 283 VAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEM 362 (869)
Q Consensus 283 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~ 362 (869)
..+++|+.|+|++|.++.+ | .++.+++|+.|+++++ .++.+..+..++.+++|+.|+++++ .++.++.....
T Consensus 483 ~~l~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~ 554 (567)
T 1dce_A 483 AALRCLEVLQASDNALENV-----D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQER 554 (567)
T ss_dssp GGCTTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTH
T ss_pred hcCCCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHH
Confidence 6778888888888876653 3 3556888888888875 5666531344778888999998885 46554432111
Q ss_pred ccccccccccCccceeec
Q 040040 363 IEEERKDIVFPQLNFLKM 380 (869)
Q Consensus 363 ~~~~~~~~~~~~L~~L~l 380 (869)
-...+|+|+.|++
T Consensus 555 -----l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 -----LAEMLPSVSSILT 567 (567)
T ss_dssp -----HHHHCTTCSEEEC
T ss_pred -----HHHHCcccCccCC
Confidence 1234788888753
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.26 E-value=4.8e-08 Score=95.33 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=19.5
Q ss_pred cccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeec
Q 040040 197 ESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTAC 236 (869)
Q Consensus 197 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c 236 (869)
+.+++|++|++++| .++.+| .++++++|++|++++|
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN 80 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC
Confidence 34556666666555 244442 4455556666666554
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.24 E-value=1.2e-06 Score=103.15 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=86.3
Q ss_pred ccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCC
Q 040040 196 AESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQ 275 (869)
Q Consensus 196 ~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 275 (869)
...+++|+.|+|+++. +..++. .+.++++|++|+++++. +..+| ..+..+++|++|+|+++.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~--~~~~l~~L~~L~Ls~N~-l~~lp-------------~~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISA--NIFKYDFLTRLYLNGNS-LTELP-------------AEIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCG--GGGGCCSCSCCBCTTSC-CSCCC-------------GGGGGGTTCCEEECTTSC-
T ss_pred hccCCCCcEEECCCCC-CCCCCh--hhcCCCCCCEEEeeCCc-CcccC-------------hhhhCCCCCCEEeCcCCc-
Confidence 4478999999999985 777765 56789999999999875 55777 456779999999998865
Q ss_pred cccccc-cccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccC
Q 040040 276 LRSFCS-VVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFS 332 (869)
Q Consensus 276 l~~~~~-~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 332 (869)
+..+|. +..+++|++|+|++|.+.. +|..++.+++|+.|+++++ .+....|
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N-~l~~~~p 333 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGN-PLEKQFL 333 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTS-CCCSHHH
T ss_pred CCccChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCC-ccCCCCh
Confidence 556654 6778999999999998654 4444667999999999986 4554433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.10 E-value=7e-08 Score=94.15 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=76.9
Q ss_pred CCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeecccccc
Q 040040 170 DAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGRED 249 (869)
Q Consensus 170 ~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~ 249 (869)
..+++|++|+++++ .++.++ . .+.+++|++|++++| .++.+|. .+..+++|++|+++++. +..++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~---~~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N~-l~~l~------ 109 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-S---LSGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYNQ-IASLS------ 109 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-C---HHHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEEE-CCCHH------
T ss_pred hcCCCCCEEECCCC-CCcccc-c---cccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCCc-CCcCC------
Confidence 35667777777766 455554 1 446777777777777 3666654 45566777777777764 44443
Q ss_pred ccCCccccccccCCcccEEeccCCCCccccc---ccccCCCcCEEEeccccccccccC------CCCCcccccCCceEEE
Q 040040 250 DINNTEVIDKIEFSQLRKLTLKSLPQLRSFC---SVVAFPNLETLKLSAINSETIWHN------QLPAMSSCIQNLTRLI 320 (869)
Q Consensus 250 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~L~~~~l~~i~~~------~~~~~~~~l~~L~~L~ 320 (869)
.+..+++|++|+++++. +..++ .+..+++|++|++++|.+...... .....+..+++|+.|+
T Consensus 110 --------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 --------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp --------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred --------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 23446777777777643 33332 356678888888888874332110 0011245578888886
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.02 E-value=1.7e-05 Score=75.06 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=37.8
Q ss_pred cEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCC
Q 040040 147 KLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLP 226 (869)
Q Consensus 147 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~ 226 (869)
+.++++++ .++.+|... .++|++|+++++ .++.++... .+.+++|++|+++++ +++.+|+ ..+.+++
T Consensus 15 ~~l~~~~n-~l~~iP~~~-------~~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI-------PTDKQRLWLNNN-QITKLEPGV--FDHLVNLQQLYFNSN-KLTAIPT-GVFDKLT 81 (174)
T ss_dssp SEEECCSS-CCSSCCSCC-------CTTCSEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred cEEEeCCC-CCCccCCCc-------CCCCcEEEeCCC-CccccCHHH--hcCCcCCCEEECCCC-CCCccCh-hHhCCcc
Confidence 44555554 444444322 255566666555 444443222 234555666666555 3555543 2345555
Q ss_pred CCcEEEEeec
Q 040040 227 QLQTIKVTAC 236 (869)
Q Consensus 227 ~L~~L~l~~c 236 (869)
+|++|+++++
T Consensus 82 ~L~~L~L~~N 91 (174)
T 2r9u_A 82 QLTQLDLNDN 91 (174)
T ss_dssp TCCEEECCSS
T ss_pred hhhEEECCCC
Confidence 5555555543
No 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.01 E-value=6.3e-07 Score=104.64 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=49.2
Q ss_pred CCcchhHHHHhhhcCC--ChhhHHHHHHHhcCCCccchhhHHHHhhccceecccccCcccc-cchheecccCCCc
Q 040040 1 SPFLALTTITRALKNK--SVPEWENVLQELQRPSMKNFQGVLKEACSTIELHYKYLKGEKL-KKIFLLCSCHDPT 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k--~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~l-K~CFlycs~Fped 72 (869)
|+||||+++|+.|+++ +.++|+.+ . ...|..+|++||+.||+ +. |+||+|||+||++
T Consensus 325 GLPLALkLaGs~Lr~k~~s~eeW~~~----------~----~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed 384 (1221)
T 1vt4_I 325 TNPRRLSIIAESIRDGLATWDNWKHV----------N----CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPS 384 (1221)
T ss_dssp CCHHHHHHHHHHHHHSCSSHHHHHHC----------S----CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHhcC----------C----hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCC
Confidence 7899999999999998 67899863 0 13588999999999986 67 9999999999985
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=0.00021 Score=77.66 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=51.3
Q ss_pred cccccEEEEeccCCcccccchhHHhhcCCccEEEEcccCCccccccccccCccccccccccccceeeccccccccccccc
Q 040040 437 FCKLKLMEVIFCKSLWTIFPHNMFARFLKLQSLIVGACGSLEEIFNLQELNSEETHSGAVSRLRELHVFCLPKLTKIWNK 516 (869)
Q Consensus 437 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 516 (869)
..+|+.+.+.+. ++. +....+.++++|+.+.+.+ .++.|.+ ..+ ..+++|+.+.+.. +++.+
T Consensus 296 ~~~L~~i~l~~~--i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~-------~aF-~~c~~L~~i~lp~--~l~~I--- 357 (394)
T 4fs7_A 296 CSSLTEVKLLDS--VKF-IGEEAFESCTSLVSIDLPY--LVEEIGK-------RSF-RGCTSLSNINFPL--SLRKI--- 357 (394)
T ss_dssp CTTCCEEEECTT--CCE-ECTTTTTTCTTCCEECCCT--TCCEECT-------TTT-TTCTTCCEECCCT--TCCEE---
T ss_pred cccccccccccc--cce-echhhhcCCCCCCEEEeCC--cccEEhH-------Hhc-cCCCCCCEEEECc--cccEe---
Confidence 467777777532 332 4566777888888888853 3555522 111 3567788888754 36666
Q ss_pred CCCCcccCCCccEEEEec
Q 040040 517 DPRGKLIFPNLVLVRIFE 534 (869)
Q Consensus 517 ~p~~~~~l~~L~~L~l~~ 534 (869)
....+.++++|+++++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 346788888888888864
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.98 E-value=4.6e-05 Score=82.95 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=22.8
Q ss_pred cccceeeeecccceeeeccc---cccceEEEeecCCCccchHHHHHhccccceEEE
Q 040040 623 PNLEELTLSKYIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVL 675 (869)
Q Consensus 623 ~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l 675 (869)
.+|+.+++..+ +..+.... +.+|+.+++..+ ...++...+.+|++|+++++
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 45555555422 33333333 344555554222 23333444555555555554
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=4.6e-06 Score=77.60 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=15.5
Q ss_pred CceEEEEecCCCCccccChhhHhccCCccEEEEeccccc
Q 040040 315 NLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDL 353 (869)
Q Consensus 315 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l 353 (869)
+|+.|++++|. +++. ....+..+++|++|++++|..+
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCcc
Confidence 34444444443 3332 1122334445555555554444
No 145
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.96 E-value=1.6e-06 Score=110.13 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=56.8
Q ss_pred CCcchhHHHHhhhcCCChhhHHHHHHHhcCCCccchh----hHHHHhhccceecccccCcccccchheecccCCCc
Q 040040 1 SPFLALTTITRALKNKSVPEWENVLQELQRPSMKNFQ----GVLKEACSTIELHYKYLKGEKLKKIFLLCSCHDPT 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k~~~~W~~~l~~l~~~~~~~~~----~~~~~i~~~L~lSY~~Lp~~~lK~CFlycs~Fped 72 (869)
|+||||+++|+.|+.+. .+|+..++.+.......+. ...+.+..+|++||+.||+ ++|.||+|||+||++
T Consensus 319 glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~ 392 (1249)
T 3sfz_A 319 GSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKD 392 (1249)
T ss_dssp TCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTT
T ss_pred CCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCC
Confidence 68999999999999886 5899999998764322221 1124588999999999986 799999999999986
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.96 E-value=2.9e-05 Score=73.13 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeee
Q 040040 173 PLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIF 243 (869)
Q Consensus 173 ~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~ 243 (869)
+.|++|+++++ .++.++... .+.+++|++|+++++ +++.+++ ..+.++++|++|+++++. ++.++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~ 94 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGV--FDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDNQ-LKSIP 94 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCCcEEEcCCC-cCCccChhh--hcCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCCc-cCEeC
Confidence 45555555555 444443222 234555555555555 3555443 234555555555555532 34443
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=6e-06 Score=76.87 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhcc----CCccEEEEeccccccccccccc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSF----VQLQHLEIRKCMDLEGIVFPEE 361 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L----~~L~~L~l~~c~~l~~i~~~~~ 361 (869)
..|++|++++|.+.. ..+.. +..+++|++|++++|..+++- ....+..+ ++|++|+|++|.++++--..
T Consensus 61 ~~L~~LDLs~~~Itd---~GL~~-L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS---IGFDH-MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII-- 133 (176)
T ss_dssp CCEEEEEEESCCCCG---GGGGG-GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH--
T ss_pred ceEeEEeCcCCCccH---HHHHH-hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH--
Confidence 357778887776432 22332 245888999999999888764 22223332 36888888888877652111
Q ss_pred cccccccccccCccceeecccCccccc
Q 040040 362 MIEEERKDIVFPQLNFLKMKDLAKLTR 388 (869)
Q Consensus 362 ~~~~~~~~~~~~~L~~L~l~~~~~L~~ 388 (869)
.+..+++|++|++++|+.++.
T Consensus 134 ------~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ------ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ------HGGGCTTCCEEEEESCTTCCC
T ss_pred ------HHhcCCCCCEEECCCCCCCCc
Confidence 123455566666555554443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.94 E-value=3.4e-05 Score=72.93 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=76.9
Q ss_pred ceeeeccccCccccccccCCCCCCCccEEEEecCCCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccC
Q 040040 121 EELWLDEVQGVENVVYELDREGFPSLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFL 200 (869)
Q Consensus 121 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~ 200 (869)
+.+++++ ..+..++..+ .++|++|+++++ .++.++... +..+++|++|+++++ +++.++... .+.++
T Consensus 15 ~~l~~~~-n~l~~iP~~~----~~~L~~L~Ls~N-~l~~~~~~~----~~~l~~L~~L~Ls~N-~l~~i~~~~--~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGI----PTDKQRLWLNNN-QITKLEPGV----FDHLVNLQQLYFNSN-KLTAIPTGV--FDKLT 81 (174)
T ss_dssp SEEECCS-SCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTT----TTTCTTCCEEECCSS-CCCCCCTTT--TTTCT
T ss_pred cEEEeCC-CCCCccCCCc----CCCCcEEEeCCC-CccccCHHH----hcCCcCCCEEECCCC-CCCccChhH--hCCcc
Confidence 3455555 3444454433 489999999998 677664332 368999999999998 788877653 24789
Q ss_pred CCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 201 RLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 201 ~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
+|++|+++++ +++.+++ ..+..+++|++|+++++.
T Consensus 82 ~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 82 QLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred hhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCCC
Confidence 9999999998 5888866 458899999999999864
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.93 E-value=3e-05 Score=73.04 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=69.4
Q ss_pred CccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCC
Q 040040 174 LLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINN 253 (869)
Q Consensus 174 ~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 253 (869)
..++++++++ .++.+|.. -.++|++|+++++ +++.+++ ..++++++|++|+++++. +..++..
T Consensus 10 ~~~~l~~s~n-~l~~ip~~-----~~~~l~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~-------- 72 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG-----IPTTTQVLYLYDN-QITKLEP-GVFDRLTQLTRLDLDNNQ-LTVLPAG-------- 72 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC-----CCTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTT--------
T ss_pred CCCEEEeCCC-CcCccCcc-----CCCCCcEEEcCCC-cCCccCh-hhhcCcccCCEEECCCCC-cCccChh--------
Confidence 3466777766 56666643 2477888888887 4777654 467788888888888754 5566521
Q ss_pred ccccccccCCcccEEeccCCCCcccccc--cccCCCcCEEEecccc
Q 040040 254 TEVIDKIEFSQLRKLTLKSLPQLRSFCS--VVAFPNLETLKLSAIN 297 (869)
Q Consensus 254 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~L~~~~ 297 (869)
.+..+++|++|++++. .++.++. +..+++|++|+|++|.
T Consensus 73 ----~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 73 ----VFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----hccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 1245778888888774 4656554 4567888888888886
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.65 E-value=5.6e-06 Score=88.93 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=5.3
Q ss_pred CccceeecccC
Q 040040 373 PQLNFLKMKDL 383 (869)
Q Consensus 373 ~~L~~L~l~~~ 383 (869)
++|++|+++++
T Consensus 239 ~~L~~L~Ls~N 249 (372)
T 3un9_A 239 PSLELLHLYFN 249 (372)
T ss_dssp SSCCEEECTTS
T ss_pred CCCCEEeccCC
Confidence 44444554444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.60 E-value=3.1e-05 Score=82.39 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=31.1
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccC---hhhHhccCCccEEEEecc
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFS---TSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~~L~l~~c 350 (869)
.+|+|++|++.+|.+.......+.. ...+++|++|+++. +.+.+... ...+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3566666666665532110000000 01256777777754 34444211 011245677777777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=0.00012 Score=77.85 Aligned_cols=143 Identities=21% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhh--cCCCCCcEEEEeecCCceeeeccccc
Q 040040 171 AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS--RGLPQLQTIKVTACKNMKVIFEVGRE 248 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~--~~L~~L~~L~l~~c~~l~~l~~~~~~ 248 (869)
.+|+|+.|.+.++..+ .++ . + ..++|++|++..|. +..- ....+ ..+++|++|+++.+..... ......
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~--~--~-~~~~L~~L~L~~~~-l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~ 240 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIG--K--K-PRPNLKSLEIISGG-LPDS-VVEDILGSDLPNLEKLVLYVGVEDYG-FDGDMN 240 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCC--S--C-BCTTCSEEEEECSB-CCHH-HHHHHHHSBCTTCCEEEEECBCGGGT-CCSCGG
T ss_pred cCCCCcEEEEeCCCCc-eec--c--c-cCCCCcEEEEecCC-CChH-HHHHHHHccCCCCcEEEEeccccccc-cchhHH
Confidence 4567777777665222 111 1 1 36778888887664 3221 01122 3678888888753211100 000000
Q ss_pred cccCCccccccccCCcccEEeccCCCCccc----ccccccCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecC
Q 040040 249 DDINNTEVIDKIEFSQLRKLTLKSLPQLRS----FCSVVAFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGC 324 (869)
Q Consensus 249 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c 324 (869)
. .........+++|++|.+.+|..-.. +.....+++|++|+|+.|.+...-...++..+..+++|+.|++++|
T Consensus 241 ~---l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 V---FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp G---TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred H---HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 0 00001113478888888877653211 1112357889999998887554211123332345889999999887
Q ss_pred C
Q 040040 325 N 325 (869)
Q Consensus 325 ~ 325 (869)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 3
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.012 Score=63.62 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=39.5
Q ss_pred CCCCCccEEEEecC--CCceecCCCCCCCCCCCCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCC
Q 040040 141 EGFPSLKLLHIQNN--PYLLCINDSTELVPRDAFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFS 218 (869)
Q Consensus 141 ~~~~~L~~L~l~~~--~~l~~i~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 218 (869)
.+|.+|+.+.+..+ ..++.|+... +..+.+|+.+.+.+ +++.+....+ ..+.+|+.+.+... ++.+..
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~a----F~~c~~L~~i~~~~--~~~~I~~~aF--~~c~~L~~i~lp~~--~~~I~~ 153 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQA----FMFCSELTDIPILD--SVTEIDSEAF--HHCEELDTVTIPEG--VTSVAD 153 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTT----TTTCTTCCBCGGGT--TCSEECTTTT--TTCTTCCEEECCTT--CCEECT
T ss_pred hCCccCceEeecCCCCCeeeEechhh----chhcccceeeccCC--ccceehhhhh--hhhcccccccccce--eeeecc
Confidence 45666666666543 2355554432 23444555544432 2334433322 24556666666432 333322
Q ss_pred hhhhcCCCCCcEEEEe
Q 040040 219 FSISRGLPQLQTIKVT 234 (869)
Q Consensus 219 ~~~~~~L~~L~~L~l~ 234 (869)
..+..+.+|+.+.+.
T Consensus 154 -~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 154 -GMFSYCYSLHTVTLP 168 (394)
T ss_dssp -TTTTTCTTCCEEECC
T ss_pred -cceeccccccccccc
Confidence 345555666666554
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.42 E-value=1.1e-05 Score=86.75 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=7.1
Q ss_pred ccCCccEEEEecc
Q 040040 338 SFVQLQHLEIRKC 350 (869)
Q Consensus 338 ~L~~L~~L~l~~c 350 (869)
..++|++|+++++
T Consensus 237 ~~~~L~~L~Ls~N 249 (372)
T 3un9_A 237 EHPSLELLHLYFN 249 (372)
T ss_dssp HCSSCCEEECTTS
T ss_pred hCCCCCEEeccCC
Confidence 3455566665554
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.38 E-value=0.00046 Score=73.49 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEee
Q 040040 171 AFPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTA 235 (869)
Q Consensus 171 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~ 235 (869)
.+++|++|+|++...++.++... .+.+++|++|+|+++ +++.+++ ..+++|++|++|++++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRD--LRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGG--SCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCS
T ss_pred CCCCeeEEEccCCCCCCCcChhH--hccccCCCEEECCCC-ccceeCH-HHhcCCcCCCEEeCCC
Confidence 34445555554311444443322 224555555555554 3444443 2445555555555554
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.37 E-value=0.0004 Score=74.00 Aligned_cols=85 Identities=22% Similarity=0.208 Sum_probs=45.2
Q ss_pred ccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecCCceeeeccccccccCCccccccccCCcccEEeccCCCCcc
Q 040040 198 SFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACKNMKVIFEVGREDDINNTEVIDKIEFSQLRKLTLKSLPQLR 277 (869)
Q Consensus 198 ~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 277 (869)
.+.+|++|+|+++.+++.+++ ..+++|++|++|+++++. +..++. ..+..+++|++|+|++ +.+.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~------------~~~~~l~~L~~L~l~~-N~l~ 93 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSG-LRFVAP------------DAFHFTPRLSRLNLSF-NALE 93 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSC-CCEECT------------TGGGSCSCCCEEECCS-SCCS
T ss_pred CCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCc-cceeCH------------HHhcCCcCCCEEeCCC-Cccc
Confidence 456666666665335665544 346666666666666643 444441 1234466666666665 3344
Q ss_pred cccc-cccCCCcCEEEecccc
Q 040040 278 SFCS-VVAFPNLETLKLSAIN 297 (869)
Q Consensus 278 ~~~~-~~~l~~L~~L~L~~~~ 297 (869)
.++. ......|+.|+|.+|.
T Consensus 94 ~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 94 SLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCCSTTTCSCCCCEEECCSSC
T ss_pred eeCHHHcccCCceEEEeeCCC
Confidence 4442 1112226666666665
No 157
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.11 E-value=9.9e-05 Score=85.14 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=55.2
Q ss_pred CCcchhHHHHhhhcCCChhhHHHHHHHhcCCCccchh----hHHHHhhccceecccccCcccccchheecccCCCc
Q 040040 1 SPFLALTTITRALKNKSVPEWENVLQELQRPSMKNFQ----GVLKEACSTIELHYKYLKGEKLKKIFLLCSCHDPT 72 (869)
Q Consensus 1 ~~PLAi~~ig~~L~~k~~~~W~~~l~~l~~~~~~~~~----~~~~~i~~~L~lSY~~Lp~~~lK~CFlycs~Fped 72 (869)
|.||||+++|+.|+.+. .+|+.+++.+.......+. .....+..++..||+.||+ +.|.||+|||+||++
T Consensus 319 G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~ 392 (591)
T 1z6t_A 319 GSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKD 392 (591)
T ss_dssp TCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTT
T ss_pred CCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCC
Confidence 68999999999998873 4799999998764322111 1123588899999999986 699999999999985
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.01 E-value=0.047 Score=58.87 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=43.0
Q ss_pred CccEEEEecCCCceecCCCCCCCCCCCCCCccEeecccc--ccccccccccccccccCCCCEEEecCCCCCcccCChhhh
Q 040040 145 SLKLLHIQNNPYLLCINDSTELVPRDAFPLLESLSLSNL--MNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSIS 222 (869)
Q Consensus 145 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~L~~L~L~~~--~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~ 222 (869)
.|+.+.+-. .++.|++.. +..+.+|+.+.+.+. ..++.+....+ ..+.+|+.+.+.+ .++.+.. ..+
T Consensus 65 ~L~sI~iP~--svt~Ig~~A----F~~C~~L~~i~~~~n~p~~l~~Ig~~aF--~~c~~L~~i~~~~--~~~~I~~-~aF 133 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNA----FYNCTSLKRVTIQDNKPSCVKKIGRQAF--MFCSELTDIPILD--SVTEIDS-EAF 133 (394)
T ss_dssp CCCEEEECT--TCCEECTTT----TTTCTTCCEEEEGGGCCCCCCEECTTTT--TTCTTCCBCGGGT--TCSEECT-TTT
T ss_pred cCEEEEECC--CeeEEhHHH----hhCCccCceEeecCCCCCeeeEechhhc--hhcccceeeccCC--ccceehh-hhh
Confidence 477777765 466676543 456677777777653 23555544432 2445555554432 2344432 345
Q ss_pred cCCCCCcEEEEe
Q 040040 223 RGLPQLQTIKVT 234 (869)
Q Consensus 223 ~~L~~L~~L~l~ 234 (869)
.++.+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp 145 (394)
T 4gt6_A 134 HHCEELDTVTIP 145 (394)
T ss_dssp TTCTTCCEEECC
T ss_pred hhhccccccccc
Confidence 556666666664
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.24 Score=52.88 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=42.9
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEeccccccccccccccccccccccccCccceeecccCccccccCCC
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIRKCMDLEGIVFPEEMIEEERKDIVFPQLNFLKMKDLAKLTRFCSG 392 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 392 (869)
+.+|+.+.+.. .++.+ ....+..+..|+.+.+.. .++.+... ....+.+|+.+.+.. +++.++..
T Consensus 216 ~~~l~~i~~~~--~~~~i-~~~~f~~~~~L~~i~lp~--~v~~I~~~--------aF~~~~~l~~i~l~~--~i~~i~~~ 280 (379)
T 4h09_A 216 GKNLKKITITS--GVTTL-GDGAFYGMKALDEIAIPK--NVTSIGSF--------LLQNCTALKTLNFYA--KVKTVPYL 280 (379)
T ss_dssp CSSCSEEECCT--TCCEE-CTTTTTTCSSCCEEEECT--TCCEECTT--------TTTTCTTCCEEEECC--CCSEECTT
T ss_pred ccccceeeecc--ceeEE-ccccccCCccceEEEcCC--CccEeCcc--------ccceeehhccccccc--cceecccc
Confidence 55666666643 34443 334455667777777654 24433211 123455666666643 45666665
Q ss_pred cccCCCCccEEEEc
Q 040040 393 NCIELPSLKQLRMA 406 (869)
Q Consensus 393 ~~~~l~~L~~L~l~ 406 (869)
.+..+++|+.+.+.
T Consensus 281 aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 281 LCSGCSNLTKVVMD 294 (379)
T ss_dssp TTTTCTTCCEEEEC
T ss_pred cccccccccccccc
Confidence 55566666666664
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.62 E-value=0.051 Score=58.25 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=18.9
Q ss_pred cCCceEEEEecCCCCccccChhhHhccCCccEEEEe
Q 040040 313 IQNLTRLIVHGCNNLKFLFSTSLVRSFVQLQHLEIR 348 (869)
Q Consensus 313 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~ 348 (869)
..+|+.+.+.. .++.+ +..++.++.+|+.+.+.
T Consensus 45 ~~~i~~v~ip~--~vt~I-g~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 45 RDRISEVRVNS--GITSI-GEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGCSEEEECT--TEEEE-CTTTTTTCTTCCEEEEC
T ss_pred ccCCEEEEeCC--CccCh-HHHHhhCCCCCCEEEeC
Confidence 45566666642 45554 34445666666666664
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.36 E-value=0.013 Score=58.79 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCCccEeeccccccccccccccccccccCCCCEEEecCCCCCcccCChhhhcCCCCCcEEEEeecC
Q 040040 172 FPLLESLSLSNLMNLEKISCSQLRAESFLRLRNLKVESCEKLTHIFSFSISRGLPQLQTIKVTACK 237 (869)
Q Consensus 172 ~~~L~~L~L~~~~~l~~l~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~ 237 (869)
+++|++|+|+++ ++..+...+...+.+++|++|+|+++ +++.+.....+..+ +|++|++++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCc
Confidence 445555555544 33333211111224555555555554 24433221222222 55555555443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.09 E-value=0.012 Score=58.99 Aligned_cols=60 Identities=23% Similarity=0.236 Sum_probs=27.5
Q ss_pred CCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccChhhHhccC--CccEEEEecc
Q 040040 285 FPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFSTSLVRSFV--QLQHLEIRKC 350 (869)
Q Consensus 285 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~--~L~~L~l~~c 350 (869)
+++|++|+|++|.+..+. .++.....+++|+.|+|++ +.++.+.. +..+. +|++|+++++
T Consensus 169 l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~-N~i~~~~~---l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSG-NELKSERE---LDKIKGLKLEELWLDGN 230 (267)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTT-SCCCSGGG---GGGGTTSCCSEEECTTS
T ss_pred CCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCC-CccCCchh---hhhcccCCcceEEccCC
Confidence 455555555555543321 1233333455566666654 33443311 22222 5666666554
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.41 E-value=0.022 Score=53.96 Aligned_cols=64 Identities=11% Similarity=0.002 Sum_probs=27.9
Q ss_pred CCcCEEEeccccccccccCCCCCcccccCCceEEEE--ecCCCCccccC---hhhHhccCCccEEEEecc
Q 040040 286 PNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIV--HGCNNLKFLFS---TSLVRSFVQLQHLEIRKC 350 (869)
Q Consensus 286 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l--~~c~~l~~l~~---~~~~~~L~~L~~L~l~~c 350 (869)
++|++|+|++|.+...-...+...+...++|++|++ +++ .+.+-.. ...+...++|++|+++++
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 455566666555332111111222233456666666 332 3332100 112334456666666654
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.75 E-value=0.023 Score=53.75 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=32.5
Q ss_pred cCCCcCEEEeccccccccccCCCCCcccccCCceEEEEecCCCCccccC---hhhHhccCCccEEEE
Q 040040 284 AFPNLETLKLSAINSETIWHNQLPAMSSCIQNLTRLIVHGCNNLKFLFS---TSLVRSFVQLQHLEI 347 (869)
Q Consensus 284 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~~L~l 347 (869)
..++|++|+|++|.+..--...+...+...++|++|++++|. +.+-.. ...+...++|++|++
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEe
Confidence 346677777777764331111122222335678888887753 332100 122344567777777
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.85 E-value=1.1 Score=39.02 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=23.0
Q ss_pred ccccceeeeecccceeeeccc---cccceEEEeecC
Q 040040 622 FPNLEELTLSKYIFTTWRQAQ---FHKLKILHFISD 654 (869)
Q Consensus 622 ~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~ 654 (869)
+++|++|+|++|.+..+..+. +++|+.|+|.+|
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 567888888888887776654 456777777444
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.38 E-value=0.64 Score=40.65 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=37.8
Q ss_pred ceeeeecccce--eeeccccccceEEEeecCCCccchHHHHHhccccceEEE
Q 040040 626 EELTLSKYIFT--TWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVL 675 (869)
Q Consensus 626 ~~L~l~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~p~~~l~~l~~L~~L~l 675 (869)
..++-+++.++ .++.+...+|+.|+|++|....+|...+..+++|+.|++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHL 62 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEEC
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEe
Confidence 35677777776 666566778999999888888888877777776666654
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=41.75 E-value=14 Score=34.59 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=5.9
Q ss_pred CCcCEEEecccc
Q 040040 286 PNLETLKLSAIN 297 (869)
Q Consensus 286 ~~L~~L~L~~~~ 297 (869)
..|++|+|++|.
T Consensus 70 ~~L~~L~L~~n~ 81 (197)
T 1pgv_A 70 KHIEKFSLANTA 81 (197)
T ss_dssp SCCCEEECTTSC
T ss_pred CCcCEEEccCCC
Confidence 345555555554
No 168
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=34.42 E-value=20 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=13.0
Q ss_pred CcchhHHHHhhhcCC
Q 040040 2 PFLALTTITRALKNK 16 (869)
Q Consensus 2 ~PLAi~~ig~~L~~k 16 (869)
+|||+.|.++.++.+
T Consensus 11 lplavav~agv~~aq 25 (28)
T 2vda_B 11 LPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CTHHHHHHHHTTCCC
T ss_pred CchHHHHHHHHhHhh
Confidence 799999999988754
Done!