BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040042
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 190/298 (63%), Gaps = 12/298 (4%)
Query: 55 VRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQKQESLYDVAL 114
V+ ML + V D + + EL D L+RLG+S HF EI ++ N+ Y NN + LY AL
Sbjct: 73 VKMMLQEEV--DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTAL 130
Query: 115 EFRLLRQHGYDT----------ATTASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIR 164
FRLLRQ+ + A + DD +G+L +YEA++L +GE R
Sbjct: 131 RFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190
Query: 165 NFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLEL 224
+F T +L++ + +KD +L+ + ALELP HWR+Q R FIDAY+ PD+N +LEL
Sbjct: 191 DFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLEL 250
Query: 225 AKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRR 284
AKLDFNMVQA+ Q++L+ S WW G ++L F RDR++E + WT GV Q GY R
Sbjct: 251 AKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERI 310
Query: 285 MSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFI 342
M TK++AL+T+IDD +D+YGTL+EL+LFT +++RWD+ +M Q P Y++ C+LAL NF+
Sbjct: 311 MLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFV 368
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 192/310 (61%), Gaps = 12/310 (3%)
Query: 44 YAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNL 103
Y + ++L+A+VR ++ + L EL D +QRLG+ Y F +I++ + +
Sbjct: 42 YKDKAKKLEAEVRREINNEKA-EFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGF 100
Query: 104 Q--KQESLYDVALEFRLLRQHGYDTATTASIQLK---------FFDDWKGILSMYEAAYL 152
+ SL+ AL FRLLRQHG++ + A K +D K ILS+YEA++L
Sbjct: 101 DGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFL 160
Query: 153 LVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYE 212
+EGENI E R F ++LKE + + VNHALELPLH R QR+E W I+AY
Sbjct: 161 ALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYR 220
Query: 213 SGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVG 272
D N VLLELA LD+NM+Q+ +Q DL S WW VG KL+FARDRL+E+F W VG
Sbjct: 221 KKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVG 280
Query: 273 VTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLK 332
V EPQ+ R K+ + +T IDD YDVYGTLDEL+LFT++VERWDV+A++ P Y+K
Sbjct: 281 VAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMK 340
Query: 333 FCFLALHNFI 342
CFLAL+N I
Sbjct: 341 LCFLALYNTI 350
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 199/330 (60%), Gaps = 27/330 (8%)
Query: 37 VQCLGKSYAK-----RIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIK 91
+Q L Y + R EL VR +L + M+P+ Q EL L+ LG+S F DEIK
Sbjct: 21 IQSLNTPYTEERHLDRKAELIVQVRILLKEK--MEPVQQLELIHDLKYLGLSDFFQDEIK 78
Query: 92 KLRNAIYR------NNNLQKQESLYDVALEFRLLRQHGYDTATTA----------SIQLK 135
++ IY NN ++K + LY AL FRLLRQHG++ + +
Sbjct: 79 EILGVIYNEHKCFHNNEVEKMD-LYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKAS 137
Query: 136 FFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNK---DPYILTLVNHALE 192
D KG+L +YEA++LL +GE+ R F T L++ + D +L + H+L+
Sbjct: 138 LAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLD 197
Query: 193 LPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGF 252
LPLHWR+Q +E RWFIDAY PD+N ++ ELAKL+FN++QA HQ++L+ +S WW + F
Sbjct: 198 LPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCF 257
Query: 253 GNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLF 312
KL F RDRL+E+F W VG+ Q GY R+M+ + L T IDD YDVYGTLDEL+LF
Sbjct: 258 PEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELF 317
Query: 313 TNSVERWDVSAMDQHPYYLKFCFLALHNFI 342
T++ +RWD ++ + PYY++ C+ +HN+I
Sbjct: 318 TDTFKRWDTESITRLPYYMQLCYWGVHNYI 347
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 201/341 (58%), Gaps = 28/341 (8%)
Query: 28 RSCHFTPFQ-----VQCLGKSYAK-----RIEELKADVRAMLDKAVVMDPLHQFELRDAL 77
RS ++ P + +Q L Y + R EL V+ L+K D + Q EL D L
Sbjct: 3 RSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKET--DQIRQLELIDDL 60
Query: 78 QRLGVSYHFGDEIKKLRNAIY------RNNNLQKQESLYDVALEFRLLRQHGYDTATT-- 129
QR+G+S HF +E K++ ++IY +N +++ LY +L FRLLR+HG+ A
Sbjct: 61 QRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVF 120
Query: 130 -------ASIQLKFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNK-DP 181
+ DD +G+L +YEA++LL EGE R F T +L+E + D
Sbjct: 121 DSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDG 180
Query: 182 YILTLVNHALELPLHWRMQRMETRWFIDAYESGPDINHVLLELAKLDFNMVQAKHQEDLE 241
+LT + ++L++PLHWR++R +I+ Y PD+N V+LELA LD N+VQA+ QE+L+
Sbjct: 181 DLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELK 240
Query: 242 SVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYD 301
WW GF KL FARDRL+E + W G+ Q R M KV+ALIT IDD YD
Sbjct: 241 ESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYD 300
Query: 302 VYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFLALHNFI 342
VYGTL+EL+ FT+ + RWD++++DQ P Y++ CFLAL+NF+
Sbjct: 301 VYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFV 341
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 12/302 (3%)
Query: 46 KRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQK 105
KR ++LK +VR M+ A + + + D++QRLGVSYHF EI+ IY NNN
Sbjct: 50 KRHQQLKEEVRKMI-VAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNN-DA 107
Query: 106 QESLYDVALEFRLLRQHGYDTAT---------TASIQLKFFDDWKGILSMYEAAYLLVEG 156
+ LY ++ FRLLR+HGY+ + + + D +G+L +Y+A+YL V G
Sbjct: 108 ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHG 167
Query: 157 ENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPD 216
E+I E +FTT +L + P + V+HAL+ + + R+E R ++ Y+
Sbjct: 168 EDILDEAISFTTHHLSLAVASLDHP-LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES 226
Query: 217 INHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWTVGVTSE 276
N LLE AK+DFNM+Q H+++L + WW+ + F KL +ARDR++E + W GV E
Sbjct: 227 HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFE 286
Query: 277 PQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYYLKFCFL 336
PQ+ R+M TKV A+ + +DD YD Y T +EL +TN++ERWD+ +D+ P Y+K +
Sbjct: 287 PQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYK 346
Query: 337 AL 338
AL
Sbjct: 347 AL 348
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 40 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 98
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 99 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 154
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 155 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 213
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 214 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 273
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
WT+GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 274 FWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 333
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 334 PDYMKISYKAI 344
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 40 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 98
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 99 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 154
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 155 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 213
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 214 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 273
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 274 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 333
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 334 PDYMKISYKAI 344
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 25 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 83
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 84 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 139
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 140 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 198
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 199 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 258
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 259 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 318
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 319 PDYMKISYKAI 329
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 38 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 182/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 38 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YA+ IE LK R+ML A L D ++RLG+SYHF EI ++ + IY
Sbjct: 38 VAEKYAQEIEALKEQTRSML-LATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 183/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YA+ IE LK R+ML A L D ++RLG+SYHF EI ++ + IY
Sbjct: 38 VAEKYAQEIEALKEQTRSML-LATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
W +GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 38 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
+GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 181/311 (58%), Gaps = 18/311 (5%)
Query: 40 LGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYR 99
+ + YAK IE LK R ML A M L D ++RLG+SYHF EI + + IY
Sbjct: 38 VAEKYAKEIEALKEQTRNML-LATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYN 96
Query: 100 NNNLQKQESLYDVALEFRLLRQHGYDTATTASIQLKFFD-----------DWKGILSMYE 148
N+ L AL+FRLLRQHG++ + I KF D D G+L++YE
Sbjct: 97 QNS--NCNDLCTSALQFRLLRQHGFNI--SPEIFSKFQDENGKFKESLASDVLGLLNLYE 152
Query: 149 AAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELPLHWRMQRMETRWFI 208
A+++ ++I + F+T +L+ H K P + V HALE LH + R+ETR+FI
Sbjct: 153 ASHVRTHADDILEDALAFSTIHLESAAPHLKSP-LREQVTHALEQCLHKGVPRVETRFFI 211
Query: 209 DA-YESGPDINHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENF 267
+ Y+ N+VLL AKLDFN++Q H+++L VS WW+ + F L +ARDR++E +
Sbjct: 212 SSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECY 271
Query: 268 LWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQH 327
+GV EPQ+ R M K ++I+ +DD +D YGT+ EL+ +T++++RWD++ +D+
Sbjct: 272 FSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRL 331
Query: 328 PYYLKFCFLAL 338
P Y+K + A+
Sbjct: 332 PDYMKISYKAI 342
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 163/322 (50%), Gaps = 55/322 (17%)
Query: 67 PLHQFE---LRDALQRLGVSYHFGDEIKKLRNAIY-----RNNNLQKQESLYDV---ALE 115
PL FE D ++RLG+ HF +EIK+ + +Y R ++ + D+ A+
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 116 FRLLRQHGYDTATTASIQLKFFDDWKG---------------ILSMYEAAYLLVEGENIF 160
R+LR HGY+ ++ LK F D G +L++ +++ GE I
Sbjct: 327 LRILRLHGYNVSSDV---LKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIM 383
Query: 161 YEIRNFTTTYLKEYIKHNKDPY--------ILTLVNHALELPLHWRMQRMETRWFIDAYE 212
E + T YL+ ++ N D + I V +AL+ P H M R+E R +I+ Y
Sbjct: 384 EEAKLCTERYLRNALE-NVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENY- 441
Query: 213 SGPD--------------INHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNF 258
GPD N LELAKLDFN VQ+ HQ +L+ + WW+ GF + LNF
Sbjct: 442 -GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNF 499
Query: 259 ARDRLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVER 318
R+R+ E + EP+F R + TK S +DD YD +G+LD+LKLFT SV+R
Sbjct: 500 TRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKR 559
Query: 319 WDVSAMDQHPYYLKFCFLALHN 340
WD+S +DQ P +K CF+ +N
Sbjct: 560 WDLSLVDQMPQQMKICFVGFYN 581
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 158/319 (49%), Gaps = 44/319 (13%)
Query: 65 MDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNN--------LQKQESLYDVALEF 116
+D L + + D + RLG+ HF EIK+ + +YR+ N L L AL F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355
Query: 117 RLLRQHGYDTATTASIQLK------------FFDDWKGILSMYEAAYLLVEGENIFYEIR 164
RLLR H Y+ + K F D +L++Y A+ L GENI E +
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 165 NFTTTYLKEYIKH-------NKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESGPDI 217
+F T YL+E ++ N + + +AL+ H + R+E + + Y PD
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PDY 473
Query: 218 --------------NHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRL 263
N LEL KLDFN++Q+ HQE++++V+ W+ G FAR+R
Sbjct: 474 ARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERP 532
Query: 264 MENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSA 323
+E + T EPQ+ R + TKV+ L T +DD YD YGTLDELKLFT +V RWD+S
Sbjct: 533 LEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF 592
Query: 324 MDQHPYYLKFCFLALHNFI 342
+ P Y+K C+ ++ +
Sbjct: 593 TENLPDYMKLCYQIYYDIV 611
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 37/305 (12%)
Query: 65 MDPLHQFELRDALQRLGVSYHFGDEIKKLRNAIYRNNNLQK--------QESLYDVALEF 116
+D L + L D ++ LG+ HF EIK + +YR+ + + L AL
Sbjct: 244 IDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGL 303
Query: 117 RLLRQHGYDTATTASIQLK-----FFD-------DWKGILSMYEAAYLLVEGENIFYEIR 164
R LR HGY+ ++ K FF + + +++++ A+ L E + R
Sbjct: 304 RTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDAR 363
Query: 165 NFTTTYLKEYI--KHNKDPYILTLVNHALELPLHWRMQRMETRWFIDAYESG-------- 214
F YL+E + K + + + + + +E P H + R+E R +ID+Y+
Sbjct: 364 KFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTL 423
Query: 215 ---PDI-NHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLNFARDRLMENFLWT 270
P + N LELAKLDFN+VQ+ HQE+L+ ++ WW+ G + +NF R R+ E +
Sbjct: 424 YRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF-- 480
Query: 271 VGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPYY 330
T EP++ R TK+ L DD D++ TLDELK FT V+RWD S + + P
Sbjct: 481 SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPEC 540
Query: 331 LKFCF 335
++ CF
Sbjct: 541 MQTCF 545
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 129/275 (46%), Gaps = 49/275 (17%)
Query: 67 PLHQFE---LRDALQRLGVSYHFGDEIKKLRNAIYR---NNNL-----QKQESLYDVALE 115
P+ FE + D LQRLG+S +F +EIK+ + ++R +N + + + D A+
Sbjct: 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMA 301
Query: 116 FRLLRQHGYDTATTA----SIQLKFF-------DDWKGILSMYEAAYLLVEGENIFYEIR 164
FRLLRQHGY + + +FF G+ ++Y A+ L E I +
Sbjct: 302 FRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAK 361
Query: 165 NFTTTYLKEYIKHNK--DPYILTL-----VNHALELPLHWRMQRMETRWFIDAYESGPDI 217
F+ YL E + + D +I+ + ALE+P + + R+ETR++ID Y D+
Sbjct: 362 EFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDV 421
Query: 218 -------------NHVLLELAKLDFNMVQAKHQEDLESVSEWWEYVGFGNKLN---FARD 261
N+ LELAK D+N QA+HQ + + +W+E N+L+ R
Sbjct: 422 WIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYE----ENRLSEWGVRRS 477
Query: 262 RLMENFLWTVGVTSEPQFGYFRRMSTKVSALITSI 296
L+E + E + + R + K S L+ +I
Sbjct: 478 ELLECYYLAAATIFESERSHERMVWAKSSVLVKAI 512
>pdb|4FZI|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi
pdb|4FZI|B Chain B, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi
pdb|4GIE|A Chain A, Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Cruzi Bound To Nadp
Length = 290
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 135 KFFDDWKGILSMYEAAYLLVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHALELP 194
KF D WK + +YE + G + NF +L E K K I +VN ++
Sbjct: 125 KFVDTWKALEKLYEEKKVRAIG------VSNFEPHHLTELFKSCK---IRPMVN---QVE 172
Query: 195 LHWRMQRMETRWFIDAY--------------ESGPDINHVLLELAKLDFNMVQAKHQEDL 240
LH Q+ R F + E+G NHVL E+AK KH +
Sbjct: 173 LHPLFQQRTLREFCKQHNIAITAWSPLGSGEEAGILKNHVLGEIAK--------KHNKSP 224
Query: 241 ESVSEWWE----YVGFGNKLNFARDRLMENF-LWTVGVTSE 276
V W+ V N + R+ ENF +W +T E
Sbjct: 225 AQVVIRWDIQHGIVTIPKSTN--KGRIQENFNVWDFKLTEE 263
>pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
Subunit A (Grla) From Staphylococcus Aureus
Length = 514
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 20/77 (25%)
Query: 34 PFQVQCLGKSYAKRIEELKADVRAMLDKAVVMDPLHQFELRDALQRLGVSYHFGDEIKK- 92
P++V S KRI+EL+AD + +D V E+RD R G+ E+KK
Sbjct: 284 PYEVNK--SSLVKRIDELRADKK--VDGIV--------EVRDETDRTGLRIAI--ELKKD 329
Query: 93 -----LRNAIYRNNNLQ 104
++N +Y+N++LQ
Sbjct: 330 VNSESIKNYLYKNSDLQ 346
>pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
pdb|3AE0|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
Length = 293
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 265 ENFLWTVGVTSEPQFGYFRRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAM 324
++F + + E Q R+ + A+ IDD+ DVYG + F N + + D+ ++
Sbjct: 26 KSFSYAADLLPEDQ----RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSI 76
Query: 325 DQHPY 329
+++PY
Sbjct: 77 EKYPY 81
>pdb|4F6V|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1034, Mg2+ And Fmp.
pdb|4F6X|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1112
Length = 292
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 283 RRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPY 329
R+ + A+ IDD+ DVYG + F N + + D+ +++++PY
Sbjct: 39 RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSIEKYPY 80
>pdb|3VJD|A Chain A, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus
pdb|3VJE|A Chain A, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus In
Complex With Zaragozic Acid A
pdb|3VJE|B Chain B, Crystal Structure Of The Y248a Mutant Of C(30) Carotenoid
Dehydrosqualene Synthase From Staphylococcus Aureus In
Complex With Zaragozic Acid A
Length = 293
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 283 RRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPY 329
R+ + A+ IDD+ DVYG + F N + + D+ +++++PY
Sbjct: 40 RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSIEKYPY 81
>pdb|3ADZ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Intermediate Pspp
pdb|3LGZ|B Chain B, Crystal Structure Of Dehydrosqualene Synthase Y129a From
S. Aureus Complexed With Presqualene Pyrophosphate
Length = 293
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 283 RRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPY 329
R+ + A+ IDD+ DVYG + F N + + D+ +++++PY
Sbjct: 40 RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSIEKYPY 81
>pdb|2ZCO|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus
pdb|2ZCP|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCP|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCQ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-652
pdb|2ZCR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-698
pdb|2ZCS|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-700
pdb|2ZY1|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-830
pdb|3ACW|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-651
pdb|3ACX|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-673
pdb|3ACY|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-702
pdb|3NPR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Presqualene
Diphosphate (Pspp)
pdb|3NRI|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Dehydrosqualene
(Dhs)
pdb|3TFN|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1183
pdb|3TFP|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1162
pdb|3TFV|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1154
Length = 293
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 283 RRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPY 329
R+ + A+ IDD+ DVYG + F N + + D+ +++++PY
Sbjct: 40 RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSIEKYPY 81
>pdb|4E9U|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With A Thiocyanate Inhibitor
pdb|4E9Z|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Quinuclidine Bph-651 In The S1
Site
pdb|4EA0|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA0|B Chain B, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA1|A Chain A, Co-Crystal Structure Of Dehydrosqualene Synthase (Crtm)
From S. Aureus With Sq-109
pdb|4EA2|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm)
Aureus Complexed With Sq-109
Length = 287
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 283 RRMSTKVSALITSIDDAYDVYGTLDELKLFTNSVERWDVSAMDQHPY 329
R+ + A+ IDD+ DVYG + F N + + D+ +++++PY
Sbjct: 34 RKAVWAIYAVCRKIDDSIDVYGDIQ----FLNQI-KEDIQSIEKYPY 75
>pdb|3QML|C Chain C, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|D Chain D, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 315
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 27/114 (23%)
Query: 84 YHFGDEIKKLRNAIYRNNNLQKQ-----ESLYDVALEFRLLRQHGYDTATTASIQLKFFD 138
Y F + K++RN I N L Q E +D +EF +HGY T
Sbjct: 18 YEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIIT---------- 67
Query: 139 DWKGILSMYEAAYL--LVEGENIFYEIRNFTTTYLKEYIKHNKDPYILTLVNHA 190
+E A L L EN+ +R +T + +++N P ++ +N +
Sbjct: 68 --------HEFALLANLSLNENLPLTLRELSTRVITSCLRNN--PPVVEFINES 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,236,542
Number of Sequences: 62578
Number of extensions: 421214
Number of successful extensions: 1367
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 28
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)