BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040043
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 135/304 (44%), Gaps = 49/304 (16%)
Query: 1 IKAATGFGHIELVTEIIK--LCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA 58
+ A+ GH+ +V +++ P + N K+ETPLH A R G+ E++ LL+ V
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV- 73
Query: 59 TLLNQERQSAFLLACRRGHVNVVKLMLN-------------------------QSWLMEF 93
++ Q+ A R GH N+VKL+L ++ L
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Query: 94 EEDRDES-------TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
E++ ++ TPLHVA GK+ V E+L R + A KN PLH A N+
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 147 EITKLLLNSKPDMALQYNN--NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204
+I KLLL P ++ NGYTPLH AA V++ + + S N + G T
Sbjct: 193 DIVKLLL---PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTP 248
Query: 205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK-TKVD 263
HLA + G + + L S G L ++ G T LHL + +A+ +IK VD
Sbjct: 249 LHLAAQEG-HAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 264 KNCR 267
R
Sbjct: 306 ATTR 309
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 5/180 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A +Q E++ LL+ A + + + LA + GH +V L+L++
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
++ TPLH+ G + + ++K + + PLH AS GN+++ K L
Sbjct: 273 LG-NKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
L + D+ + GY+PLHQAA GH I+ + + S N +++DG T +A R G
Sbjct: 331 LQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLG 388
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 101 TPLHVAISRGKIDIVKEILK-------------------VRPSFCEQAD----------- 130
TPLHVA G + IVK +L+ R E A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 131 --KNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
K+ PLH A+RIG+ + KLLL N+ P++A G+TPLH AA GHV+ + A
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLAL 132
Query: 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAIL 246
+ S C+T G T H+A ++GK L E + G T LH+A+
Sbjct: 133 LEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVH 188
Query: 247 RNNYQLAEYIIKK 259
NN + + ++ +
Sbjct: 189 HNNLDIVKLLLPR 201
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ- 66
GH+ + +IK +V A TPLH A GN ++ LL+ V N + +
Sbjct: 289 GHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV----NAKTKL 343
Query: 67 --SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV--- 121
S A ++GH ++V L+L ++ E D +TPL +A G I V ++LKV
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYIS-VTDVLKVVTD 401
Query: 122 RPSFCEQADKNR 133
SF +DK+R
Sbjct: 402 ETSFVLVSDKHR 413
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
LA R GH+ VVKL+L + + D++ TPLH+A G +++VK +L+ + D
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-D 65
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190
KN PLH A+R G++E+ KLLL + D+ + + NG TPLH AA NGH+++++ + +
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G +++VK +L+ + DKN PLH A+R G++E+ KLLL + D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
+ + NG TPLH AA NGH+++++ + + N +G T HLA R G L
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 221 AESFDF 226
E+ +
Sbjct: 121 LEAGAY 126
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A R G+ E+ LLL+ V ++ ++ LA R GH+ VVKL+L +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
+D++ TPLH+A G +++VK +L+ + DKN PLH A+R G++E+ KLL
Sbjct: 63 A-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120
Query: 153 LNS 155
L +
Sbjct: 121 LEA 123
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATLLNQE 64
GH+E ++KL + A VN K + TPLH A R G+ E+ LLL+ V ++
Sbjct: 13 GHLE----VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN 67
Query: 65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
++ LA R GH+ VVKL+L + + D++ TPLH+A G +++VK +L+
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
NG TPLH AA NGH+++++ + + N +G T HLA R G L E+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
++ +D+ G T LHLA RN + ++ + D N ++ +T L + +G E
Sbjct: 58 -GADVNAKDKNGRTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 286 AFSSELQS 293
L++
Sbjct: 116 VVKLLLEA 123
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLF 56
GH+E ++KL + A VN K + TPLH A R G+ E+ LLL+ +
Sbjct: 79 GHLE----VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 5/196 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+PLH A G+ +I +L++ + T ++++++ + A H+ VK ++ L++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
+D + ST LH+A +G ++V+ +L D P+ +A+ +V++ KLL
Sbjct: 72 -PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
L+ D+ ++ N LH AA +G V I E +A+ + + GD+ H+A R
Sbjct: 131 LSKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSPLHIAAREN 188
Query: 213 KYNAFI-FLAESFDFT 227
+Y+ + FL+ D T
Sbjct: 189 RYDCVVLFLSRDSDVT 204
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
N +PLH AA GHV I + + C + D T A A +L ++
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKA-- 66
Query: 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
L+ +D G+T LHLA + +Y++ +Y++ ++D NC++
Sbjct: 67 -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 9/189 (4%)
Query: 91 MEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
M F+ E +++ +PLH A G +DI +++ + ++ R PL A+ ++E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAV 60
Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
K L+ + + + G T LH AA GH ++++ +++ NC G T A
Sbjct: 61 KYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 210 RFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
+ + + L++ D ++ +D N LH A +AE I+ K D + N
Sbjct: 120 EYKHVDLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAE-ILLAAKCDLHAVN 174
Query: 269 YTNQTALDV 277
+ L +
Sbjct: 175 IHGDSPLHI 183
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190
+N+ PLH A+ G+V+I +L+ + ++ + + TPL +AA N H++ ++ I +
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 191 PTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
+ +G T HLA + G Y +L + ++ QD G T + A +
Sbjct: 68 AL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHV 124
Query: 251 QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE------AFSSELQSVEEPNGSPKHL 304
L + ++ K D N R+ L SG + A +L +V SP H+
Sbjct: 125 DLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + DK+ PLH A+R G++EI ++LL + D+ + +
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
+GYTPLH AA GH++I+E + + N DG T HLA R G + L
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T LAI N +AE + K
Sbjct: 126 D----VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V +++ + LA R GH+ +V+++L
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
+ +D+D TPLH+A G ++IV+ +LK DK+ PLH A+R G++EI +
Sbjct: 61 VN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
+LL + D+ Q + G TP A NG+ I E
Sbjct: 119 VLLKAGADVNAQ-DKFGKTPFDLAIDNGNEDIAEVL 153
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + +GYTPLH AA GH++I+E + + N
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
DG T HLA R G + L D ++ +D+ G T LHLA + ++ E ++
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +T D+ ++G ++
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNED 148
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+E+V ++K V A ++ TPLH A R+G+ EI +LLK V +++ +
Sbjct: 46 GHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYT 103
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
LA R GH+ +V+++L + +D+ TP +AI G DI + + K
Sbjct: 104 PLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGNEDIAEVLQK 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 72.0 bits (175), Expect = 8e-13, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 8/152 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + DK+ PLH A+R G++EI ++LL + D+ + +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
+GYTPLH AA GH++I+E + + N DG T HLA R G + L
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
D ++ QD+FG T ++I N LAE +
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + +GYTPLH AA GH++I+E + + N
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
DG T HLA R G + L D ++ +D+ G T LHLA + ++ E ++
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ ++G ++
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNED 160
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V +++ + LA R GH+ +V+++L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
+ +D+D TPLH+A G ++IV+ +LK DK+ PLH A+R G++EI +
Sbjct: 73 VN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVE 130
Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
+LL + D+ Q + G T + NG+ + E
Sbjct: 131 VLLKAGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+E+V ++K V A ++ TPLH A R+G+ EI +LLK V +++ +
Sbjct: 58 GHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYT 115
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
LA R GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 116 PLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + DK+ PLH A+R G++EI ++LL + D+ + +
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
+GYTPLH AA GH++I+E + + N DG T HLA R G + L
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T LAI + +AE + K
Sbjct: 126 D----VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V +++ + LA R GH+ +V+++L
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
+ +D+D TPLH+A G ++IV+ +LK DK+ PLH A+R G++EI +
Sbjct: 61 VN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186
+LL + D+ Q + G TP A GH I E
Sbjct: 119 VLLKAGADVNAQ-DKFGKTPFDLAIREGHEDIAEVL 153
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + +GYTPLH AA GH++I+E + + N
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDK 66
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
DG T HLA R G + L D ++ +D+ G T LHLA + ++ E ++
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +T D+ G ++
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHED 148
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+E+V ++K V A ++ TPLH A R+G+ EI +LLK V +++ +
Sbjct: 46 GHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYT 103
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
LA R GH+ +V+++L + +D+ TP +AI G DI + + K
Sbjct: 104 PLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 4/144 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + D D TPLH+A S G ++IV+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
+D PLH A+ G++EI ++LL D+ Y+N+G+TPLH AA GH++I+E +
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 189 SSPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 135 HG-ADVNAQDKFGKTAFDISIDNG 157
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 8/152 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + D + PLH A+ G++EI ++LL + D+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DL 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
G TPLH AA GH++I+E + N DG T HLA ++G + L
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
D ++ QD+FG T ++I N LAE +
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ +N+GYTPLH AA NGH++I+E + + N
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHLEIVEVLLKNG-ADVNASDL 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G + L D ++ D G+T LHLA + ++ E ++K
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGAD----VNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A + TPLH A G+ EI +LLK V + + LA GH+ +V++
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + D D TPLH+A G ++IV+ +LK
Sbjct: 99 LLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK 52
A GH+E+V ++K + A N+ TPLH A + G+ EI +LLK
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDG-HTPLHLAAKYGHLEIVEVLLK 134
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 48/207 (23%)
Query: 57 VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
+AT +Q+ ++A AC GH +V+ +L + D+D++ +PLH+A S G+ +I
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGRDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
VK +L V+ + ++N C PLHYA+ EI +LL + PD Y+ T +H
Sbjct: 89 VKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
+AA G++K++ + F K + I
Sbjct: 145 RAAAKGNLKMVHILL-----------------------FYKASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
QD GNT LHLA + A++++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQ 194
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 46/205 (22%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
G ++ + E I L ++ T LH AC G+ EI LL+ + V
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---------- 66
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDIVKEILKVRPSF 125
D+D++ +PLH+A S G+ +IVK +L V+ +
Sbjct: 67 ---------------------------NDKDDAGWSPLHIAASAGRDEIVKALL-VKGAH 98
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
++N C PLHYA+ EI +LL + PD Y+ T +H+AA G++K++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMHRAAAKGNLKMV 155
Query: 184 EAFIASSPTSFNCLTTDGDTVFHLA 208
+ S N T+G+T HLA
Sbjct: 156 HILLFYK-ASTNIQDTEGNTPLHLA 179
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
GK+D +KE + S + D++ LH+A G+ EI + LL N K D
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
G++PLH AA G +I++A + N + +G T H A ++ + L E
Sbjct: 73 ---GWSPLHIAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
+D + T +H A + N ++ +I+ K N ++ T L
Sbjct: 129 GANPD---AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPL 176
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V AVN+ TPLH A + EI+ +LL+ + +A A +G++ +V +
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
+L +D + +TPLH+A +++ K
Sbjct: 158 LLFYKASTNI-QDTEGNTPLHLACDEERVEEAK 189
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + AD PLH A+ G++EI ++LL D+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DV 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
GYTPLH AA GH++I+E + + N + +DG T HLA ++G + L
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T ++I N LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ +N G TPLH AA +GH++I+E + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAA-DNTGTTPLHLAAYSGHLEIVEVLLKHG-ADVDASDV 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA +G + L D + D G T LHLA ++ E ++K
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAM----DSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE 94
L EA R G + +L+ V N + LA GH+ +V+++L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTG-TTPLHLAAYSGHLEIVEVLLKHG------ 70
Query: 95 EDRDES-----TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEIT 149
D D S TPLH+A G ++IV+ +LK + D + PLH A++ G +EI
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 150 KLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
++LL D+ Q + G T + NG+ + E
Sbjct: 130 EVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLK-------TNLFVATLLNQERQSAFLLACRRG 76
V A + TPLH A G+ EI +LLK +++F T L+ LA G
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLH--------LAAYWG 91
Query: 77 HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
H+ +V+++L + D D TPLH+A G ++IV+ +LK
Sbjct: 92 HLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57 VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
+AT +Q+ ++A AC GH +V+ +L + D+D++ +PLH+A S G +I
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
VK +L V+ + ++N C PLHYA+ EI +LL + PD Y+ T +H
Sbjct: 89 VKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
+AA G++K++ + F K + I
Sbjct: 145 RAAAKGNLKMVHILL-----------------------FYKASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
QD GNT LHLA + A++++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQ 194
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 46/205 (22%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
G ++ + E I L ++ T LH AC G+ EI LL+ + V
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---------- 66
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDIVKEILKVRPSF 125
D+D++ +PLH+A S G +IVK +L V+ +
Sbjct: 67 ---------------------------NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAH 98
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
++N C PLHYA+ EI +LL + PD Y+ T +H+AA G++K++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAMHRAAAKGNLKMV 155
Query: 184 EAFIASSPTSFNCLTTDGDTVFHLA 208
+ S N T+G+T HLA
Sbjct: 156 HILLFYK-ASTNIQDTEGNTPLHLA 179
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
GK+D +KE + S + D++ LH+A G+ EI + LL N K D
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
G++PLH AA G +I++A + N + +G T H A ++ + L E
Sbjct: 73 ---GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
+D + T +H A + N ++ +I+ K N ++ T L
Sbjct: 129 GANPD---AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPL 176
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V AVN+ TPLH A + EI+ +LL+ + +A A +G++ +V +
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVK 116
+L +D + +TPLH+A +++ K
Sbjct: 158 LLFYKASTNI-QDTEGNTPLHLACDEERVEEAK 189
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 40/190 (21%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + E+D + TPLH+A +G ++IV+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLK-HGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
ADK PLH A+ G++EI ++LL + D+ + G+TPLH AA GH++I+E +
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEIVEVLL- 133
Query: 189 SSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
KY A + + QD+FG T ++I
Sbjct: 134 ------------------------KYGADV------------NAQDKFGKTAFDISIDNG 157
Query: 249 NYQLAEYIIK 258
N LAE + K
Sbjct: 158 NEDLAEILQK 167
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + +++G TPLH AAI GH++I+E + N
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADK 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
GDT HLA +G + L D ++ D +G T LHLA + ++ E ++
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGAD----VNATDTYGFTPLHLAADAGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ ++G ++
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A ++ +TPLH A +G+ EI +LLK V ++ + LA GH+ +V++
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + D TPLH+A G ++IV+ +LK
Sbjct: 99 LLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G +++VK +L+ + DKN PLH A+R G++E+ KLLL + D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASS 190
+ + NG TPLH AA NGH+++++ + +
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
LA R GH+ VVKL+L + + D++ TPLH+A G +++VK +L+ + D
Sbjct: 8 LAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-D 65
Query: 131 KNRCLPLHYASRIGNVEITKLLLNS 155
KN PLH A+R G++E+ KLLL +
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A R G+ E+ LLL+ V ++ ++ LA R GH+ VVKL+L +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
+D++ TPLH+A G +++VK +L+
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225
NG TPLH AA NGH+++++ + + N +G T HLA R G L E+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
++ +D+ G T LHLA + ++ + +++
Sbjct: 58 -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATLLNQE 64
GH+E ++KL + A VN K + TPLH A R G+ E+ LLL+ V ++
Sbjct: 13 GHLE----VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN 67
Query: 65 RQSAFLLACRRGHVNVVKLML 85
++ LA R GH+ VVKL+L
Sbjct: 68 GRTPLHLAARNGHLEVVKLLL 88
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLF 56
GH+E ++KL + A VN K + TPLH A R G+ E+ LLL+ +
Sbjct: 46 GHLE----VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 41/159 (25%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM- 159
TPLH+ ++ G ++I++ +LK +DK+ PLH A+ G++EI ++LL D+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 160 ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219
A+ Y GYTPLH AA +GH++I+E + KY A +
Sbjct: 108 AMDYQ--GYTPLHLAAEDGHLEIVEVLL-------------------------KYGADV- 139
Query: 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
+ QD+FG T ++I N LAE + K
Sbjct: 140 -----------NAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNN---GYTPLHQAAINGHVKILEAFIASSPTSFNC 196
A+R G + ++L+ + D+ N N G TPLH NGH++I+E + + N
Sbjct: 21 AARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNA 75
Query: 197 LTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
G T HLA G + L D + +Q G T LHLA + ++ E
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ----GYTPLHLAAEDGHLEIVEV 131
Query: 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
++ K D N ++ +TA D+ ++G ++
Sbjct: 132 LL-KYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
L GH+ +++++L + + D+ TPLH+A RG ++IV+ +LK D
Sbjct: 53 LVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-VNAMD 110
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
PLH A+ G++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFL---LACRRGHVNVVKLMLNQSW 89
TPLH G+ EI +LLK A +N +S + LA RGH+ +V+++L
Sbjct: 49 TPLHLVVNNGHLEIIEVLLK----YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 90 LMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ D TPLH+A G ++IV+ +LK
Sbjct: 105 DVN-AMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+E++ ++K V A ++ TPLH A +G+ EI +LLK V ++ + +
Sbjct: 58 GHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYT 115
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 116 PLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A++ G++EI ++LL D+ ++N G TPLH AA NGH++I+E + N
Sbjct: 50 PLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAES-FDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
+G T HLA Y+ + + E + ++ QD+FG T ++I N LAE
Sbjct: 108 AKDYEGFTPLHLA----AYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
+ K
Sbjct: 164 ILQK 167
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + G+TPLH AA GH++I+E + N
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAKTGHLEIVEVLLKYG-ADVNAWDN 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G + L D ++ +D G T LHLA + ++ E ++
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGAD----VNAKDYEGFTPLHLAAYDGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ ++G ++
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 71 LACRRGHVNVVKLMLN-----QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF 125
LA + GH+ +V+++L +W D +TPLH+A G ++IV+ +LK +
Sbjct: 53 LAAKTGHLEIVEVLLKYGADVNAW------DNYGATPLHLAADNGHLEIVEVLLK-HGAD 105
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
D PLH A+ G++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A + G+ EI +LLK V N + LA GH+ +V+++L +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAADNGHLEIVEVLLKHGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
+D + TPLH+A G ++IV+ +LK
Sbjct: 108 -AKDYEGFTPLHLAAYDGHLEIVEVLLK 134
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDM-ALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSF 194
PLH A+R+G++EI ++LL + D+ AL + +G TPLH AA GH++I+E +
Sbjct: 50 PLHLAARVGHLEIVEVLLKNGADVNALDF--SGSTPLHLAAKRGHLEIVEVLLKYG-ADV 106
Query: 195 NCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
N T G T HLA G L + ++ QD+FG T ++I N LAE
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVL---LKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YI 256
+
Sbjct: 164 IL 165
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
+TPLH A R G+ EI +LLK V L+ + LA +RGH+ +V+++L +
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 92 EFEEDRDESTPLHVAISRGKIDIVKEILK 120
+D STPLH+A G ++IV+ +LK
Sbjct: 107 N-ADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD 130
LA R GH+ +V+++L + D STPLH+A RG ++IV+ +LK D
Sbjct: 53 LAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADD 110
Query: 131 KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
PLH A+ G++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A GH+E+V ++K V A++ TPLH A ++G+ EI +LLK V +
Sbjct: 54 AARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDT 111
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 230 LHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE---- 285
++ +D +G+T LHLA + ++ E ++ K D N +++ T L + + G E
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 286 --AFSSELQSVEEPNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREAL 337
+ +++ + + +P HL D +I E+ +Y + + +++ + A
Sbjct: 99 LLKYGADVNADDTIGSTPLHLA--ADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57 VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
+AT +Q+ ++A AC GH +V+ +L L D+D++ +PLH+A S G+ +I
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
VK +L + + ++N C PLHYA+ EI +LL + PD Y T +H
Sbjct: 90 VKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMH 145
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
+AA G++K++ H+ L + K + I
Sbjct: 146 RAAAKGNLKMI----------------------HILLYY-KASTNI-------------- 168
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
QD GNT LHLA + A+ ++ +
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQ 195
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 46/205 (22%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
G +E + E I L ++ T LH AC G+ EI LL+ + V
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---------- 67
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDIVKEILKVRPSF 125
D+D++ +PLH+A S G+ +IVK +L + +
Sbjct: 68 ---------------------------NDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQ 99
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
++N C PLHYA+ EI +LL + PD Y T +H+AA G++K++
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMHRAAAKGNLKMI 156
Query: 184 EAFIASSPTSFNCLTTDGDTVFHLA 208
+ S N T+G+T HLA
Sbjct: 157 HILLYYK-ASTNIQDTEGNTPLHLA 180
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
GK++ +KE + S + D++ LH+A G+ EI + LL N K D
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 73
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
G++PLH AA G +I++A + N + +G T H A ++ + L E
Sbjct: 74 ---GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
+D + T +H A + N ++ +I+ K N ++ T L
Sbjct: 130 GANP---DAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPL 177
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 48/207 (23%)
Query: 57 VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDI 114
+AT +Q+ ++A AC GH +V+ +L L D+D++ +PLH+A S G+ +I
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLH 172
VK +L + + ++N C PLHYA+ EI +LL + PD Y T +H
Sbjct: 89 VKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMH 144
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
+AA G++K++ H+ L + K + I
Sbjct: 145 RAAAKGNLKMI----------------------HILLYY-KASTNI-------------- 167
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKK 259
QD GNT LHLA + A+ ++ +
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQ 194
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 46/205 (22%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
G +E + E I L ++ T LH AC G+ EI LL+ + V
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---------- 66
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDES--TPLHVAISRGKIDIVKEILKVRPSF 125
D+D++ +PLH+A S G+ +IVK +L + +
Sbjct: 67 ---------------------------NDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQ 98
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLL--NSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
++N C PLHYA+ EI +LL + PD Y T +H+AA G++K++
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE---ATAMHRAAAKGNLKMI 155
Query: 184 EAFIASSPTSFNCLTTDGDTVFHLA 208
+ S N T+G+T HLA
Sbjct: 156 HILLYYK-ASTNIQDTEGNTPLHLA 179
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL------NSKPDMALQY 163
GK++ +KE + S + D++ LH+A G+ EI + LL N K D
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA---- 72
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223
G++PLH AA G +I++A + N + +G T H A ++ + L E
Sbjct: 73 ---GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 224 FDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
+D + T +H A + N ++ +I+ K N ++ T L
Sbjct: 129 GANP---DAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPL 176
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + D + PLH A+ G++EI ++LL D+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDI 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
G TPLH AA+ GH++I+E + N + T GDT HLA G + L
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T ++I N LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + D TPLH+A + G ++IV+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
D PLH A+ IG++EI ++LL D+ + G TPLH AAI GH++I+E +
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 189 SSPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 135 HG-ADVNAQDKFGKTAFDISIDNG 157
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + +G TPLH AA GH++I+E + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDI 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G + L D + D +G+T LHLA + + ++ E ++K
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 47/157 (29%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK VN +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG---------------------ADVNAI----------- 76
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC-----LPLHYASRIGNVE 147
D STPLH+A G ++IV+ +LK AD N PLH A+ +G++E
Sbjct: 77 ---DIXGSTPLHLAALIGHLEIVEVLLK------HGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 148 ITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
I ++LL D+ Q + G T + NG+ + E
Sbjct: 128 IVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A +GH+E+V ++K V A++ TPLH A G+ EI +LLK V ++
Sbjct: 54 AATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDT 111
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + D + PLH A+ G++EI ++LL D+ +
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDI 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
G TPLH AA+ GH++I+E + N + T GDT HLA G + L
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T ++I N LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + D TPLH+A + G ++IV+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
D PLH A+ IG++EI ++LL D+ + G TPLH AAI GH++I+E +
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 189 SSPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 135 HG-ADVNAQDKFGKTAFDISIDNG 157
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + +G TPLH AA GH++I+E + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDI 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G + L D + D +G+T LHLA + + ++ E ++K
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAV----DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 47/157 (29%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK VN + +M
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHG---------------------ADVNAIDIM-------- 79
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC-----LPLHYASRIGNVE 147
STPLH+A G ++IV+ +LK AD N PLH A+ +G++E
Sbjct: 80 ------GSTPLHLAALIGHLEIVEVLLK------HGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 148 ITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
I ++LL D+ Q + G T + NG+ + E
Sbjct: 128 IVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A +GH+E+V ++K V A++ TPLH A G+ EI +LLK V ++
Sbjct: 54 AATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDT 111
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
D PLH A+ IG+ EI ++LL D+ + + +G+TPLH AA NGH++I+E +
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 190 SPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248
N G T HLA G + L D ++ QD+FG T ++I
Sbjct: 103 G-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNG 157
Query: 249 NYQLAEYIIK 258
N LAE + K
Sbjct: 158 NEDLAEILQK 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V +Q + LA GH +V+++L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQG-STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
+ D D TPLH+A G ++IV+ +LK Q D PLH A+ G++EI +
Sbjct: 73 VN-ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVE 130
Query: 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
+LL D+ Q + G T + NG+ + E
Sbjct: 131 VLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A +++ TPLH A G+ EI +LLK V + + + LA GH+ +V++
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + +D TPLH+A RG ++IV+ +LK
Sbjct: 99 LLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A GH E+V ++K V A + TPLH A G+ EI +LLK + A + Q
Sbjct: 54 AAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK---YGADVNAQ 109
Query: 64 ERQ--SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ + LA RGH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 110 DAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
D + TPLH+A + G+++IV+ +LK + +D PLH A+ G++EI ++LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 156 KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
D+ Y+ G+TPLH AA++G ++I+E + N G T F +++ G+
Sbjct: 95 GADVN-AYDRAGWTPLHLAALSGQLEIVEVLLKHG-ADVNAQDALGLTAFDISINQGQ 150
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 97 RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK 156
+D L A + G+ D V+ IL + D N PLH A+ G +EI ++LL +
Sbjct: 4 QDLGKKLLEAAAAGQDDEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 157 PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA 216
D+ ++ G TPLH AA +GH++I+E + N G T HLA G+
Sbjct: 63 ADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHG-ADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 217 F-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
+ L D ++ QD G T ++I + LAE +
Sbjct: 121 VEVLLKHGAD----VNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+ G + ++L+ + D+ ++NG TPLH AA NG ++I+E + + N +
Sbjct: 13 AAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLKNG-ADVNASDS 70
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGL-LHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA Y+ + + E G ++ D+ G T LHLA L ++ E ++K
Sbjct: 71 AGITPLHLA----AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ TA D+ G ++
Sbjct: 127 H-GADVNAQDALGLTAFDISINQGQED 152
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A ++ TPLH A G EI +LLK V + + LA GH+ +V++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEV 90
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + DR TPLH+A G+++IV+ +LK
Sbjct: 91 LLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 39/158 (24%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G ++IV+ +LK + D PLH A+ G++EI ++LL + D+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK-NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
+ ++NG TPLH AA GH++I+E + KY A +
Sbjct: 108 AK-DDNGITPLHLAANRGHLEIVEVLL-------------------------KYGADV-- 139
Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
+ QD+FG T ++I N LAE + K
Sbjct: 140 ----------NAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + G+TPLH AA GH++I+E + + N T
Sbjct: 21 AARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHLEIVEVLLKNG-ADVNAYDT 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA FG + L D ++ +D G T LHLA R + ++ E ++
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDDNGITPLHLAANRGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ +G ++
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNGNED 160
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK V + + LA GH+ +V+++L +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
++D + TPLH+A +RG ++IV+ +LK
Sbjct: 108 AKDD-NGITPLHLAANRGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A FGH+E+V ++K V A ++ TPLH A +G+ EI +LLK + A + Q
Sbjct: 87 AAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLK---YGADVNAQ 142
Query: 64 ER--QSAFLLACRRGHVNVVKLM 84
++ ++AF ++ G+ ++ +++
Sbjct: 143 DKFGKTAFDISINNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A+ G++EI ++LL + D+ + ++ G TPLH AA GH++I+E + + N
Sbjct: 50 PLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
+ G T HLA + G + L D ++ QD+FG T ++I N LAE
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
+ K
Sbjct: 164 ILQK 167
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G ++IV+ +LK + D PLH A+R G++EI ++LL + D+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
+++G+TPLH AA GH++I+E + + N G T F +++ G
Sbjct: 108 AS-DSHGFTPLHLAAKRGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNG 157
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + G+TPLH AA GH++I+E + + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNG-ADVNAKDS 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA R G + L D ++ D G T LHLA R + ++ E ++
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGAD----VNASDSHGFTPLHLAAKRGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ ++G ++
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNED 160
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK V + + LA RRGH+ +V+++L +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
D TPLH+A RG ++IV+ +LK
Sbjct: 108 -ASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLE---TPLHEACRQGNAEISALLLKTNLFVATL 60
A FGH+E+V ++K A VN K TPLH A R+G+ EI +LLK V
Sbjct: 54 AAHFGHLEIVEVLLKNG----ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV--- 106
Query: 61 LNQERQSAFL---LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKE 117
N F LA +RGH+ +V+++L + +D+ T ++I G D+ E
Sbjct: 107 -NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLA-E 163
Query: 118 ILK 120
IL+
Sbjct: 164 ILQ 166
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + D + PLH A+ G++EI ++LL + D+ ++
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDH 78
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESF 224
G TPL AA+ GH++I+E + + N +G T HLA FG + L
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
D ++ QD+FG T ++I N LAE + K
Sbjct: 138 D----VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + +G+TPLH AA NGH++I+E + + N +
Sbjct: 21 AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDH 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T LA FG + L D ++ D G+T LHLA + + ++ E ++
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLL- 133
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
K D N ++ +TA D+ ++G ++
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNED 160
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + ED TPLH+A G ++IV+ +LK +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
D PL A+ G++EI ++LL + D+ + G+TPLH AA+ GH++I+E +
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 189 SSPTSFNCLTTDGDTVFHLALRFG 212
+ N G T F +++ G
Sbjct: 135 NG-ADVNAQDKFGKTAFDISIDNG 157
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK V ++ + LA GH+ +V+++L +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
D + TPLH+A G ++IV+ +LK
Sbjct: 108 -ANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+E+V ++K V AV+ TPL A G+ EI +LLK V + E +
Sbjct: 58 GHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHT 115
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 166
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL 60
++ A FGH+E+V ++K V A + + TPLH A G+ EI +LLK A +
Sbjct: 84 LRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADV 139
Query: 61 LNQER--QSAFLLACRRGHVNVVKLM 84
Q++ ++AF ++ G+ ++ +++
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 49/168 (29%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G ++IV+ +LK + + AD PLH A+ G++EI ++LL D+
Sbjct: 49 TPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
++ G TPLH AA GH++I+E + KY A +
Sbjct: 108 -AFDMTGSTPLHLAADEGHLEIVEVLL-------------------------KYGADV-- 139
Query: 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRN 268
+ QD+FG T ++I N LA K+CRN
Sbjct: 140 ----------NAQDKFGKTAFDISIDNGNEDLA----------KSCRN 167
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ +N G TPLH AA++GH++I+E + +
Sbjct: 21 AARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHG-ADVDAADV 78
Query: 200 DGDTVFHLALRFG---------KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250
G T HLA G KY A + +FD T G+T LHLA +
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADV---NAFDMT---------GSTPLHLAADEGHL 126
Query: 251 QLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS 289
++ E ++ K D N ++ +TA D+ ++G ++ S
Sbjct: 127 EIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V AV+ TPLH A G+ EI +LLK V + + LA GH+ +V++
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLHLAAMTGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + D STPLH+A G ++IV+ +LK
Sbjct: 99 LLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A+ G++EI ++LL + D+ ++ G TPLH AA GH++++E + + N
Sbjct: 50 PLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLKNG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
+G T HLA G + L D ++ QD+FG T ++I N LAE
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 255 YIIK 258
+ K
Sbjct: 164 ILQK 167
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH+A G ++IV+ +LK + D PLH A+ G++E+ ++LL + D+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
++NG+TPLH AA GH++I+E + N G T F +++ G
Sbjct: 108 AN-DHNGFTPLHLAANIGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNG 157
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ ++ G+TPLH AA GH++I+E + + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDS 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G + L D ++ D G T LHLA + ++ E ++K
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGAD----VNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ ++G ++
Sbjct: 135 H-GADVNAQDKFGKTAFDISIDNGNED 160
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQ---SAFLLACRRGHVNVVKLMLNQSW 89
TPLH A G+ EI +LLK V N + + LA RGH+ VV+++L
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADV----NADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
Query: 90 LMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ D + TPLH+A + G ++IV+ +LK
Sbjct: 105 DVN-ANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 69 FLLACRRGHVNVVK-LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
L A R G + V+ LM N + + D TPLH+A + G ++IV E+L +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIV-EVLLRNGADVN 62
Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187
D N PLH A+ +G++EI ++LL D+ + + G TPL+ AA GH++I+E +
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLL 121
Query: 188 ASSPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 122 KHG-ADVNAQDKFGKTAFDISIDIG 145
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A+ +G++EI ++LL + D+ + NG TPLH AA GH++I+E + N
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVN 95
Query: 196 CLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAE 254
G T +LA +G + L D ++ QD+FG T ++I N LAE
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDIGNEDLAE 151
Query: 255 YI 256
+
Sbjct: 152 IL 153
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D A Y++ G TPLH AA GH++I+E + + N + T
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVNAVDT 66
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
+G T HLA G L + ++ +D G T L+LA + ++ E ++K
Sbjct: 67 NGTTPLHLAASLGHLEIVEVL---LKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 260 TKVDKNCRNYTNQTALDVLKESGTKE 285
D N ++ +TA D+ + G ++
Sbjct: 124 -GADVNAQDKFGKTAFDISIDIGNED 148
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L N A + ++ +A GH+ +V+++L
Sbjct: 2 LGKKLLEAARAGQDD-EVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150
+ D + +TPLH+A S G ++IV+ +LK D PL+ A+ G++EI +
Sbjct: 61 VN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEIVE 118
Query: 151 LLLNSKPDMALQ 162
+LL D+ Q
Sbjct: 119 VLLKHGADVNAQ 130
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A GH+E+V E++ V AV+ TPLH A G+ EI +LLK V +
Sbjct: 42 AAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDA 99
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ LA GH+ +V+++L + +D+ T ++I G D+ EIL+
Sbjct: 100 TGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDLA-EILQ 154
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
PLH A + V+E+L +PS Q D++ +PLH++ EIT LL+ ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 QY--NNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
+++G+TP H A G+++++++ N +T G T HLA+ +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
FL E+ + +D+F LH A + +L E + K N ++ T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 13 VTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLLNQERQSAFL 70
V E++ P L+ ++ PLH + EI++ LL N+ + + + F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDES-TPLHVAISRGKIDIVKEILKVRPSFCEQA 129
+AC G++ VVK + ++ + + ++ T LH+A+ + ++ + +++ S
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIK 136
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
DK +PLH A+ +G++++ +LL + G+TPL A GH
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 38/190 (20%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQA 129
AC V+ +L+ + ++D+D PLH ++S +I +L + +
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNS--KPDMALQYNNNGYT------------------ 169
D + P H A +GN+E+ K L + KPD+ + N G T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 170 ---------------PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
PLH+AA G +K++E ++ N G T AL G
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 215 NAFIFLAESF 224
+A + L E +
Sbjct: 188 DAAVLLVEKY 197
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 33 TPLHEACRQGNAEISALL----LKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS 88
TP H AC GN E+ L LK +L + + + LA + V + ++
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 89 WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI 148
+ + D+ PLH A S G + +++ + + S DK PL +A G+ +
Sbjct: 131 ASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 149 TKLLL 153
LL+
Sbjct: 190 AVLLV 194
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
PLH A + V+E+L +PS Q D++ +PLH++ EIT LL+ ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 Q--YNNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
+++G+TP H A G+++++++ N +T G T HLA+ +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
FL E+ + +D+F LH A + +L E + K N ++ T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 13 VTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLLNQERQSAFL 70
V E++ P L+ ++ PLH + EI++ LL N+ + + + F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDES-TPLHVAISRGKIDIVKEILKVRPSFCEQA 129
+AC G++ VVK + ++ + + ++ T LH+A+ + ++ + +++ S
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIK 136
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
DK +PLH A+ +G++++ +LL + G+TPL A GH
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 38/190 (20%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQA 129
AC V+ +L+ + ++D+D PLH ++S +I +L + +
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNS--KPDMALQYNNNGYT------------------ 169
D + P H A +GN+E+ K L + KPD+ + N G T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 170 ---------------PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
PLH+AA G +K++E ++ N G T AL G
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 215 NAFIFLAESF 224
+A + L E +
Sbjct: 188 DAAVLLVEKY 197
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 33 TPLHEACRQGNAEISALL----LKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS 88
TP H AC GN E+ L LK +L + + + LA + V + ++
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 89 WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI 148
+ + D+ PLH A S G + +++ + + S DK PL +A G+ +
Sbjct: 131 ASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 149 TKLLL 153
LL+
Sbjct: 190 AVLLV 194
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
PLH A + V+E+L +PS Q D++ +PLH++ EIT LL+ ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 162 QY--NNNGYTPLHQAAINGHVKILEAFIASS-PTSFNCLTTDGDTVFHLALRFGKYNAFI 218
+++G+TP H A G+++++++ N +T G T HLA+ +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275
FL E+ + +D+F LH A + +L E + K N ++ T L
Sbjct: 125 FLIEN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 4/170 (2%)
Query: 13 VTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK--TNLFVATLLNQERQSAFL 70
V E++ P L+ ++ PLH + EI++ LL N+ + + + F
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDES-TPLHVAISRGKIDIVKEILKVRPSFCEQA 129
+AC G++ VVK + ++ + + ++ T LH+A+ + ++ + +++ S
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIK 136
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
DK +PLH A+ +G++++ +LL + G+TPL A GH
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 38/190 (20%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQA 129
AC V+ +L+ + ++D+D PLH ++S +I +L + +
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNS--KPDMALQYNNNGYT------------------ 169
D + P H A +GN+E+ K L + KPD+ + N G T
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 170 ---------------PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY 214
PLH+AA G +K++E ++ N G T AL G
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 215 NAFIFLAESF 224
+A + L E +
Sbjct: 188 DAAVLLVEKY 197
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 33 TPLHEACRQGNAEISALL----LKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS 88
TP H AC GN E+ L LK +L + + + LA + V + ++
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 89 WLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEI 148
+ + D+ PLH A S G + +++ + + S DK PL +A G+ +
Sbjct: 131 ASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 149 TKLLL 153
LL+
Sbjct: 190 AVLLV 194
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A + GH +VKL++++ + +D D TPLH A G +IVK +L + + D
Sbjct: 44 AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDS 101
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
+ PLHYA++ G+ EI KLL++ D+ +++G TPL A +G+ VK+LE
Sbjct: 102 DGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIVKLLE 156
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G D VK++++ + +D + PLHYA++ G+ EI KLL++ D+ + ++
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAESF 224
+G TPLH AA GH +I++ I S N +DG T H A + G K + +++
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
D ++ D G T L LA N ++ + + K+
Sbjct: 128 D----VNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 15 EIIKLCPQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL 71
EI+KL A VN K TPLH A ++G+ EI LL+ V + + ++
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHY 109
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
A + GH +VKL++++ + D D TPL +A G +IVK + K
Sbjct: 110 AAKEGHKEIVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVKLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 35 LHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE 94
L EA GN + LL+ V + + ++ LA GH VVKL+L+Q
Sbjct: 8 LIEAAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNA 65
Query: 95 EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
+D D TPLH+A G ++VK +L + + D + PLH A+ G+ E+ KLLL+
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 155 SKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
D +++G TPL A +G+ VK+LE
Sbjct: 125 QGADPNTS-DSDGRTPLDLAREHGNEEVVKLLE 156
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A + +TPLH A G+ E+ LLL + + ++ LA GH VVKL
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGA-DPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
+L+Q +D D TPLH+A G ++VK +L + + +D + PL A
Sbjct: 89 LLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNTSDSDGRTPLDLAREH 146
Query: 144 GNVEITKLL 152
GN E+ KLL
Sbjct: 147 GNEEVVKLL 155
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+ GN + K LL + D+ +++G TPLH AA NGH ++++ ++ N +
Sbjct: 11 AAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADP-NAKDS 68
Query: 200 DGDTVFHLALRFG-KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
DG T HLA G K + L++ D + +D G T LHLA + ++ + ++
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 259 KTKVDKNCRNYTNQTALDVLKESGTKE 285
+ D N + +T LD+ +E G +E
Sbjct: 125 Q-GADPNTSDSDGRTPLDLAREHGNEE 150
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 15 EIIKLCPQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL 71
E++KL A N K +TPLH A G+ E+ LLL + + ++ L
Sbjct: 51 EVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-DPNAKDSDGKTPLHL 109
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
A GH VVKL+L+Q D D TPL +A G ++VK + K
Sbjct: 110 AAENGHKEVVKLLLSQG-ADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 106 AISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY 163
A G D VK++L+ P+ +D + PLHYA+ G+ EI KLLL+ D +
Sbjct: 11 AAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK- 66
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAE 222
+++G TPLH AA NGH +I++ ++ N +DG T H A G K + L++
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
D + D G T L LA N ++ + + K+
Sbjct: 126 GAD----PNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A GH +VKL+L++ +D D TPLH A G +IVK +L + + D
Sbjct: 44 AAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDS 101
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
+ PLHYA+ G+ EI KLLL+ D +++G TPL A +G+ VK+LE
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTS-DSDGRTPLDLAREHGNEEIVKLLE 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI LLL + + ++ A GH +VKL+L++
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGA-DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADP 96
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
+D D TPLH A G +IVK +L + + +D + PL A GN EI KLL
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 15 EIIKLCPQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL 71
EI+KL A N K TPLH A G+ EI LLL + + ++
Sbjct: 51 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-DPNAKDSDGRTPLHY 109
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
A GH +VKL+L++ D D TPL +A G +IVK + K
Sbjct: 110 AAENGHKEIVKLLLSKG-ADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 35.4 bits (80), Expect = 0.072, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 39/178 (21%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+ GN + K LL + D +++G TPLH AA NGH +I++ ++
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS-DSDGRTPLHYAAENGHKEIVKLLLSKGADP------ 63
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
+ +D G T LH A + ++ + ++ K
Sbjct: 64 -------------------------------NAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 260 TKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKRQIKE 317
D N ++ +T L E+G KE L +PN S + DL++ E
Sbjct: 93 -GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNE 149
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G D VK++++ + +D + PLH+A+ G+ E+ KLL++ D+ + ++
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG-KYNAFIFLAESF 224
+G TPLH AA NGH ++++ I S N +DG T H A G K + +++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
D ++ D G T L LA N ++ + + K+
Sbjct: 128 D----VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A GH VVKL++++ + +D D TPLH A G ++VK +L + + D
Sbjct: 44 AAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDS 101
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH---VKILE 184
+ PLH+A+ G+ E+ KLL++ D+ +++G TPL A +G+ VK+LE
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVKLLE 156
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A + TPLH A G+ E+ LL+ V + + ++ A GH VVKL
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143
++++ + +D D TPLH A G ++VK +L + + +D + PL A
Sbjct: 89 LISKGADVN-AKDSDGRTPLHHAAENGHKEVVK-LLISKGADVNTSDSDGRTPLDLAREH 146
Query: 144 GNVEITKLL 152
GN E+ KLL
Sbjct: 147 GNEEVVKLL 155
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 15 EIIKLCPQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL 71
E++KL A VN K TPLH A G+ E+ LL+ V + + ++
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH 109
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
A GH VVKL++++ + D D TPL +A G ++VK + K
Sbjct: 110 AAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 15 EIIKLCPQLVAAVNEKL---ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLL 71
E++KL A VN K TPLH A G+ E+ LL+ V T + + ++ L
Sbjct: 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDL 142
Query: 72 ACRRGHVNVVKLMLNQ-SWL 90
A G+ VVKL+ Q WL
Sbjct: 143 AREHGNEEVVKLLEKQGGWL 162
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
D++ PLH A+++G++EI ++LL D+ + +N G TPLH AAI GH++I+E +
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 190 SPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 103 G-ADVNAQDKFGKTAFDISIDNG 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 173 QAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQ 232
+A + V+IL A + N L DG T HLA + G L + ++
Sbjct: 23 RAGQDDEVRILMA----NGADVNALDEDGLTPLHLAAQLGHLEIVEVL---LKYGADVNA 75
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
+D FG T LHLA +R + ++ E ++K D N ++ +TA D+ ++G ++
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V L+++ + LA + GH+ +V+++L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ ED TPLH+A RG ++IV+ +LK
Sbjct: 73 VN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ---SAFLLACRRGHVNV 80
V A++E TPLH A + G+ EI +LLK V N E + LA RGH+ +
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV----NAEDNFGITPLHLAAIRGHLEI 95
Query: 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
V+++L + +D+ T ++I G D+ EIL+
Sbjct: 96 VEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + G TPLH AA+N H++I+E + + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNG-ADVNAIDA 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G+T HL +G + L D ++ QD+FG T ++I N LAE + K
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + ED+ TPLH+A ++IV+ +LK
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEIVEVLLK------NG 70
Query: 129 ADKNRC-----LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
AD N PLH + G++EI ++LL D+ Q + G T + NG+ +
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLA 129
Query: 184 E 184
E
Sbjct: 130 E 130
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A + EI +LLK V ++ ++ L GH+ +V+++L +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
+D+ T ++I G D+ EIL+
Sbjct: 108 -AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 47 SALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106
SAL L A L + ++ L A R G+ + +L + D +STPLH+A
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP---DMALQY 163
++ IV+ +L+ + DK +PLH A G+ E+T+LLL M L
Sbjct: 66 AGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 164 NNNGYTPLHQAAINGHVKILEAFIA--SSPTSFNC 196
+TPLH+AA V++ ++ + PT NC
Sbjct: 125 ----FTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A +GH E VTE++ V A++ TPLHEA + E+ +LLL ++ TL+N
Sbjct: 98 ACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHGADPTLVNC 155
Query: 64 ERQSA---------------------FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP 102
+SA L A R + VK L ++ F++ + T
Sbjct: 156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETA 214
Query: 103 LHVAIS--RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
LH A++ K V E+L + + + +K+ PLH A+ + ++ ++L M
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIA--SSPT 192
++ G T LH+AA+ GH++ ++ S P+
Sbjct: 275 -ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A+ +D+V+++L+ + Q ++ PLH A ++ +I +LLL D L+
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KK 70
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
NG TP AAI G VK+L+ F++ C G T F A +GK A FL
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFL 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK--V 121
E + A + V++V+ +L + F+E+ TPLH A+ + DIV+ +L+
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK 181
P + KN P A+ G+V++ KL L+ D+ + + G+T +AA+ G VK
Sbjct: 64 DPVLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVK 119
Query: 182 ILE 184
L+
Sbjct: 120 ALK 122
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ----- 87
TPLH A + +I LLL+ L + + FLLA G V ++KL L++
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 88 -------SWLMEF-------------------------EEDRDE-----STPLHVAISRG 110
+ ME +ED++ +T L A +G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 111 KIDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVE-ITKLLLNSKPDMALQYNNN 166
++++K +L + C+ +N + +S +VE IT LLL+ D+ ++
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GER 218
Query: 167 GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
G TPL A H+ +++ + N +DG T LA+
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A+ +D+V+++L+ + Q ++ PLH A ++ +I +LLL D L+
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KK 90
Query: 166 NGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
NG TP AAI G VK+L+ F++ C G T F A +GK A FL
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFL 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK--V 121
E + A + V++V+ +L + F+E+ TPLH A+ + DIV+ +L+
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK 181
P + KN P A+ G+V++ KL L+ D+ + + G+T +AA+ G VK
Sbjct: 84 DPVLRK---KNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVK 139
Query: 182 ILE 184
L+
Sbjct: 140 ALK 142
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 55/250 (22%)
Query: 15 EIIKLCPQLV---AAVNEKLE----TPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
E + L QL+ A VN + E TPLH A + +I LLL+ L + +
Sbjct: 36 EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGAT 94
Query: 68 AFLLACRRGHVNVVKLMLNQ------------SWLMEF---------------------- 93
F+LA G V ++KL L++ + ME
Sbjct: 95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 94 ---EEDRDE-----STPLHVAISRGKIDIVKEILK---VRPSFCEQADKNRCLPLHYASR 142
+ED++ +T L A +G ++++K +L + C+ +N + +S
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214
Query: 143 IGNVE-ITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
+VE IT LLL+ D+ ++ G TPL A H+ +++ + N +DG
Sbjct: 215 DSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 273
Query: 202 DTVFHLALRF 211
T LA+
Sbjct: 274 KTALLLAVEL 283
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 97 RDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL--N 154
+D S+PLHVA G+ D++ +LK + + ++ +PLH A + G+ ++ K LL N
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL 209
+KP+ + + +G TPL A GH +++ A + S N G+T H A+
Sbjct: 143 AKPN---KKDLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAV 193
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK- 120
+Q+ S +A G +++ L+L + D++ PLH+A +G +VK +L
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 121 -VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179
+P+ + D + PL YA G+ E+ LLL + NN G T LH+A I H
Sbjct: 142 NAKPN---KKDLSGNTPLIYACSGGHHELVALLLQHGASINAS-NNKGNTALHEAVIEKH 197
Query: 180 VKILEAFI 187
V ++E +
Sbjct: 198 VFVVELLL 205
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 39 CRQGNAEISALLLKTNLFVATLLNQERQSAFL---LACRRGHVNVVKLMLNQSWLMEFEE 95
CR+GNA L L LNQ F ACR G VV++++ + +
Sbjct: 13 CREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM- 68
Query: 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
+R + TPLH+A S G DIV+++L+ + +++ +PLHYA G ++ + L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
R GN +L L++ + Q +++G++PLH A G ++E I N +
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGD 72
Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
DT HLA G + + + + ++ ++ GN LH A Q+AE ++
Sbjct: 73 DTPLHLAASHGHRD---IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Query: 262 VDKNCRNY 269
+ C Y
Sbjct: 130 LVSICNKY 137
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA 58
A GH ++V ++++ + AVNE PLH AC G +++ L+ V+
Sbjct: 79 AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + G TPLH AA H++I+E + N
Sbjct: 21 AARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHG-ADVNAHDN 78
Query: 200 DGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
DG T HLA FG + L D ++ QD+FG T ++I N LAE + K
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
D+ PLH A+ ++EI ++LL D+ ++N+G TPLH AA+ GH++I+E +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 190 SPTSFNCLTTDGDTVFHLALRFG 212
N G T F +++ G
Sbjct: 103 G-ADVNAQDKFGKTAFDISIDNG 124
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90
L L EA R G + +L+ V +++ + LA H+ +V+++L
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ D D STPLH+A G ++IV+ +LK
Sbjct: 73 VN-AHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A + K TPLH A + EI +LLK V N + + LA GH+ +V++
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-DGSTPLHLAALFGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + +D+ T ++I G D+ EIL+
Sbjct: 99 LLKHGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A++ G+ E K LL+ D+ + + +G TPLH AA NGH +I++ +A N
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVN 69
Query: 196 CLTTDGDTVFHLALRFGKY 214
+ DG+T HLA + G +
Sbjct: 70 ARSKDGNTPEHLAKKNGHH 88
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAE 222
+ +G TPLH AA NGH + ++ + S N + DG+T HLA + G + LA+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY 269
D ++ + + GNT HLA ++++ + + K D N R++
Sbjct: 65 GAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSW 106
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A + G+AE LL V +++ + LA + GH +VKL+L + +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 93 FEEDRDESTPLHVAISRGKIDIVK 116
+D +TP H+A G +IVK
Sbjct: 70 -ARSKDGNTPEHLAKKNGHHEIVK 92
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A + GH VK +L++ + +D +TPLH+A G +IVK +L + + K
Sbjct: 16 AAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVK-LLLAKGADVNARSK 73
Query: 132 NRCLPLHYASRIGNVEITKLL 152
+ P H A + G+ EI KLL
Sbjct: 74 DGNTPEHLAKKNGHHEIVKLL 94
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH E V +++ V A ++ TPLH A + G+AEI LLL V +++ +
Sbjct: 20 GHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNT 77
Query: 68 AFLLACRRGHVNVVKLM 84
LA + GH +VKL+
Sbjct: 78 PEHLAKKNGHHEIVKLL 94
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ ++ G TPLH AA GH++I+E + N +
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDS 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G L E + ++ QD+FG T ++I N LAE + K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + +D TPLH+A RG ++IV+ +LK +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
+D PLH A+ +G++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A+++ TPLH A ++G+ EI +LLK V + R + LA GH+ +V++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR-TPLHLAATVGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + +D+ T ++I G D+ EIL+
Sbjct: 99 LLEYGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 39 CRQGNAEISALLLKTNLFVATLLNQERQSAFL---LACRRGHVNVVKLMLNQSWLMEFEE 95
CR+GNA L L LNQ F ACR G VV++++ + +
Sbjct: 8 CREGNAVAVRLWLDNT---ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM- 63
Query: 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
+R + TPLH+A S G DIV+++L+ + +++ +PLHYA G ++ + L+ +
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 156 KPDMALQYNNNGYTPLHQA 174
+++ N G P+ +A
Sbjct: 123 GALVSI-CNKYGEMPVDKA 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201
R GN +L L++ + Q +++G++PLH A G ++E I N +
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGD 67
Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
DT HLA G + + + + ++ ++ GN LH A Q+AE ++
Sbjct: 68 DTPLHLAASHGHRD---IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 262 VDKNCRNY 269
+ C Y
Sbjct: 125 LVSICNKY 132
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVA 58
A GH ++V ++++ + AVNE PLH AC G +++ L+ V+
Sbjct: 74 AASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ ++ G TPLH AA GH++I+E + N
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDI 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G L E + ++ QD+FG T ++I N LAE + K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + +D TPLH+A RG ++IV+ +LK +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
R PLH A+ +G++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 77 DIWGRT-PLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 130
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A+++ TPLH A ++G+ EI +LLK V R + LA GH+ +V++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR-TPLHLAATVGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + +D+ T ++I G D+ EIL+
Sbjct: 99 LLEYGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ ++ G TPLH AA GH++I+E + N
Sbjct: 21 ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDI 78
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G L E + ++ QD+FG T ++I N LAE + K
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLE---YGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + +D TPLH+A RG ++IV+ +LK
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLK------HG 70
Query: 129 ADKNRC-----LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183
AD N PLH A+ +G++EI ++LL D+ Q + G T + NG+ +
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLA 129
Query: 184 E 184
E
Sbjct: 130 E 130
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
V A+++ TPLH A ++G+ EI +LLK V R + LA GH+ +V++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR-TPLHLAATVGHLEIVEV 98
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+L + +D+ T ++I G D+ EIL+
Sbjct: 99 LLEYGADVN-AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKL 83
VA E ++ PLHEA ++GN L + V L ++ +A AC GH ++V+
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEX 124
Query: 84 MLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
+ Q + ++++ T LH A +G DIV+ +L
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
PLH A RG + ++E L R DK L++A G+ +I + L ++P++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLF-TQPNI 131
Query: 160 AL-QYNNNGYTPLHQAAINGHVKILEAFIA 188
L Q N G T LH AA G+ I++ +A
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A++ GN+ + L+++ + + G T L+ A GH I+E N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 196 CLTTDGDTVFHLALRFG 212
GDT H A G
Sbjct: 135 QQNKLGDTALHAAAWKG 151
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGL 229
PLH+AA G++ L + + N L G T + A G + L +
Sbjct: 76 PLHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 230 LHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALD 276
L+QQ++ G+T LH A + + + ++ K + RN + A D
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFD 178
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + G TPL+ A +GH++I+E + + N +
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDA 78
Query: 200 DGDTVFHLALRFGKYN-AFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G T HLA G A + L D ++ QD+FG T ++I N LAE + K
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PL+ A+ G++EI ++LL + D+ + G+TPLH AA GH++I E + N
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVN 107
Query: 196 CLTTDGDTVFHLALRFG 212
G T F +++ G
Sbjct: 108 AQDKFGKTAFDISIGNG 124
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ 128
L A R G + V++++ + +D TPL++A + G ++IV+ +LK +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNA 75
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
D PLH A+ IG++EI ++LL D+ Q + G T + NG+ + E
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAE 130
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLK 52
AT GH+E+V ++K V AV+ TPLH A G+ EI+ +LLK
Sbjct: 54 ATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174
VKEIL+ ++ D PL+ A ++EI K L++ D+ LQ N+ +P A
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYA 79
Query: 175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL----AESFDFTGLL 230
G +IL + + N G A G + L E DF
Sbjct: 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF---- 135
Query: 231 HQQDQFGNTVLHLAI-LRNNYQLAEYIIK---KTKVDKNCRNYTNQTALDVLKESGTKE 285
Q+ FG T L A+ LR QL + I+K + D++ ++ + +TA+D + G E
Sbjct: 136 --QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS-WL 90
++P A QG EI A +LK N+ +A + A +GH++ VKL+L
Sbjct: 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED 132
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILK-VRPSFCEQADKNRC--LPLHYASRIGNVE 147
++F+ D + + R + ++I+K + + +Q+ K+ + YA++ G E
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
Query: 148 ITKLL 152
I+K+L
Sbjct: 193 ISKIL 197
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 36/265 (13%)
Query: 98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKP 157
D+ A S G + V +L+ R + A+ + LH A NV++ K L+ +
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 158 DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLAL-------- 209
++ Q +N G+ PLH AA G++ I E ++ S + ++GDT +A
Sbjct: 98 NIN-QPDNEGWIPLHAAASCGYLDIAE-YLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 210 -----RFG-------KYNAFIFLAESFDFTGLLHQQD----QFGNTVLHLAILRNNYQLA 253
R G K I L ++ + H D + G T LH+A + ++
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 254 EYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQYKDLSKR 313
+ +I + + D N ++Y T L G +EA ++++ + K Q D++
Sbjct: 216 KLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Query: 314 QI----KELSKR----YKSRRDKKN 330
I +EL K+ + +R+KK+
Sbjct: 275 DILGYLEELQKKQNLLHSEKREKKS 299
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 62/217 (28%)
Query: 67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC 126
+ FL AC G V +L + + + + D T LH A +D+VK +++ +
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGANI- 99
Query: 127 EQADKNRCLPLHYASRIGNVEITKLLL---------NSKPDMAL---------------- 161
Q D +PLH A+ G ++I + L+ NS+ D L
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 162 -----------------------QYNNNGY-----------TPLHQAAINGHVKILEAFI 187
Q+ N+G+ T LH AA G+ ++L+ I
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 188 ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF 224
+ N DG T H A +GK A L E+
Sbjct: 220 -QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
G +I + +L +R + + D+ +H A+R G ++ + LL + D+ ++ +N G
Sbjct: 48 GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
PLH AA GH++++E + + ++ GDT LA +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
G V H A R G+ + L E F ++ +D GN LHLA + ++ E+++K T
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 261 KVDKNCRNYTNQTALDVLKESGTKEAFS 288
+ RN+ TA D+ + G E S
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 95 EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
+DR +H A G++D ++ +L+ + D LPLH A++ G++ + + L+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
N+ G T A + G +++ A+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
G +I + +L +R + + D+ +H A+R G ++ + LL ++ D+ ++ +N G
Sbjct: 48 GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
PLH AA GH++++E + + ++ GDT LA +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Score = 36.2 bits (82), Expect = 0.044, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
G V H A R G + L E+ ++ +D GN LHLA + ++ E+++K T
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEN---QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 261 KVDKNCRNYTNQTALDVLKESGTKEAFS 288
+ RN+ TA D+ + G E S
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVS 154
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
F R E T LH+A +G I V+ +L+ S D PLH A G++++ +LL
Sbjct: 5 FTNHRGE-TLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 153 LNSKPDMALQYNNNGY---TPLHQAAINGHVKILEAFIA 188
L K AL N GY +PLH AA NGHV I++ ++
Sbjct: 63 LQHK---AL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLN 86
TPLHEAC G+ ++ LLL+ V T + S A + GHV++VKL+L+
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
N + ET LH A +G+ LL+ N + + + AC GH+ VV+L+L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEIL 119
L+ +++S PLH A G +DIVK +L
Sbjct: 66 KALVNTTGYQNDS-PLHDAAKNGHVDIVKLLL 96
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLL 51
A GH+++V E++ LV + ++PLH+A + G+ +I LLL
Sbjct: 50 ACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
G +I + +L +R + + D+ +H A+R G ++ + LL + D+ ++ +N G
Sbjct: 48 GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
PLH AA GH++++E + + ++ GDT LA +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
G V H A R G + L E F ++ +D GN LHLA + ++ E+++K T
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 261 KVDKNCRNYTNQTALDVLKESGTKEAFS 288
+ RN+ TA D+ + G E S
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVS 154
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
G +I + +L +R + + D+ +H A+R G ++ + LL + D+ ++ +N G
Sbjct: 48 GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
PLH AA GH++++E + + ++ GDT LA +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
G V H A R G + L E F ++ +D GN LHLA + ++ E+++K T
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 261 KVDKNCRNYTNQTALDVLKESGTKEAFS 288
+ RN+ TA D+ + G E S
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVS 154
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
+PL +A + + ++LK Q LH A+ N+E +L+ + P++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 161 LQYNNN----GYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHL----ALRFG 212
+ + G T LH A IN +V ++ A +A S + T +VFH + +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATG--SVFHYRPHNLIYYG 121
Query: 213 KYN-AFIFLAESFDFTGLLHQ-------QDQFGNTVLHLAILRNNYQLA 253
++ +F S + LL + QD GNTVLH+ IL+ N A
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYT 169
G +I + +L +R + + D+ +H A+R G ++ + LL + D+ ++ +N G
Sbjct: 48 GNPEIARRLL-LRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNL 105
Query: 170 PLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213
PLH AA GH++++E + + ++ GDT LA +G+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 201 GDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKT 260
G+ V H A R G + L E F ++ +D GN LHLA + ++ E+++K T
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 261 KVDKNCRNYTNQTALDVLKESGTKEAFS 288
+ RN+ TA D+ + G E S
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 95 EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154
+DR + +H A G +D ++ +L+ + D LPLH A++ G++ + + L+
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 155 SKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
N+ G T A + G +++ A+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNN---GYTPLHQAAINGHVKILEAFIASSPTSFNC 196
A+R G + ++L + D+ N N G+TPLH AA+ GH++I+E + + N
Sbjct: 21 AARAGQDDEVRILTANGADV----NANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNA 75
Query: 197 LTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
G T HLA + L D ++ QD+FG T ++I N LAE
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 256 IIK 258
+ K
Sbjct: 132 LQK 134
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A G+ EI +LLK V N R + LA H+ +V+++L +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR-TPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILK 120
+D+ T ++I G D+ EIL+
Sbjct: 108 -AQDKFGKTAFDISIDNGNEDLA-EILQ 133
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
N + + L EA + G+ E L + + + A V+VV+ +L
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
+ +D+ PLH A S G + V E+L + AD + PLH A+ G E
Sbjct: 67 GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
I KLLL D + N +G TPL
Sbjct: 125 ICKLLLQHGAD-PTKKNRDGNTPL 147
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A++ G+VE K L + TPLH AA V ++E ++ +
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDK 75
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
G H A +G Y L + +++ D + T LH A + Y++ + +++
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 260 TKVDKNCRNYTNQTALDVLKESGT 283
D +N T LD++K+ T
Sbjct: 133 -GADPTKKNRDGNTPLDLVKDGDT 155
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
N + + L EA + G+ E L + + + A V+VV+ +L
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
+ +D+ PLH A S G + V E+L + AD + PLH A+ G E
Sbjct: 65 GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
I KLLL D + N +G TPL
Sbjct: 123 ICKLLLQHGAD-PTKKNRDGNTPL 145
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A++ G+VE K L + TPLH AA V ++E ++ +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDK 73
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
G H A +G Y L + +++ D + T LH A + Y++ + +++
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 260 TKVDKNCRNYTNQTALDVLKESGT 283
D +N T LD++K+ T
Sbjct: 131 -GADPTKKNRDGNTPLDLVKDGDT 153
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
N + + L EA + G+ E L + + + A V+VV+ +L
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVE 147
+ +D+ PLH A S G + V E+L + AD + PLH A+ G E
Sbjct: 69 GADVH-AKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 148 ITKLLLNSKPDMALQYNNNGYTPL 171
I KLLL D + N +G TPL
Sbjct: 127 ICKLLLQHGAD-PTKKNRDGNTPL 149
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A++ G+VE K L + TPLH AA V ++E ++ +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDK 77
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259
G H A +G Y L + +++ D + T LH A + Y++ + +++
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 260 TKVDKNCRNYTNQTALDVLKESGT 283
D +N T LD++K+ T
Sbjct: 135 -GADPTKKNRDGNTPLDLVKDGDT 157
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
TPLH A RQG+ + L+K +L++ E S LA + GH ++V ++ + ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 93 FEEDRDESTPLHVAISRG-KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
D++ TPL A R +D + +L S ++ LH+A GN + L
Sbjct: 137 M-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 152 LLNSKPDMALQ 162
LL + ++ Q
Sbjct: 196 LLEAGANVDAQ 206
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 106 AISRGKIDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
A +RG + V+ +L V P + K + + S +E+ K + P++
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQ--GASPNVQ-- 70
Query: 163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222
+ +G +P+H AA G + L+ + N L + G HLA+R G + FLA
Sbjct: 71 -DASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
D LH +D G T L LA R L + +
Sbjct: 129 ESD----LHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+P+HEA G+ ++S L + + ++ + S AC GH++ VK++L +
Sbjct: 61 SPMHEAAIHGH-QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
D TPL A G D V +L+ S Q + + P+H A+R G+VE L
Sbjct: 120 GVT-ADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 176
Query: 153 LNSKPDMALQYNNNGYTPLHQAAIN 177
+ ++ + ++ G TPL+ A N
Sbjct: 177 IAYGGNIDHKISHLG-TPLYLACEN 200
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+ V ++K Q V V TPL AC G+ + LLL+ V + S
Sbjct: 103 GHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLAS 159
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
A RRGHV V ++ ++ + TPL++A + VK++L+
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISH-LGTPLYLACENQQRACVKKLLESGADV-- 216
Query: 128 QADKNRCLPLHYASRIGNVEITKLLLN 154
K + PLH R + E+ LL++
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMD 243
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 75 RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC 134
GH ++ +++Q W + D +PLH A G + VK +LK + +
Sbjct: 69 HGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWH 126
Query: 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
PL A G+ + LLL ++Q ++ +P+H+AA GHV+ + + IA
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHG--ASVQPESDLASPIHEAARRGHVECVNSLIA 178
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 106 AISRGKIDIVKEILK---VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ 162
A +RG + V+ +L V P + K + + S +E+ K + P++
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQ--GASPNVQ-- 72
Query: 163 YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222
+ +G +P+H AA G + L+ + N L + G HLA+R G + FLA
Sbjct: 73 -DASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 223 SFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
D LH +D G T L LA R L + +
Sbjct: 131 ESD----LHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+P+HEA G+ ++S L + + ++ + S AC GH++ VK++L +
Sbjct: 5 SPMHEAAIHGH-QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
D TPL A G D V +L+ S Q + + P+H A+R G+VE L
Sbjct: 64 -GVTADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 120
Query: 153 LNSKPDMALQYNNNGYTPLHQAAIN 177
+ ++ + ++ G TPL+ A N
Sbjct: 121 IAYGGNIDHKISHLG-TPLYLACEN 144
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+PLHEAC G+ +LLK V + + + AC G + V L+L
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHG--AS 94
Query: 93 FEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152
+ + D ++P+H A RG ++ V ++ + + + PL+ A K L
Sbjct: 95 VQPESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKL 153
Query: 153 LNSKPDMALQYNNNGY---TPLHQAA 175
L S D+ N G +PLH A
Sbjct: 154 LESGADV-----NQGKGQDSPLHAVA 174
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQS 67
GH+ V ++K Q V V TPL AC G+ + LLL+ V + S
Sbjct: 47 GHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLAS 103
Query: 68 AFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCE 127
A RRGHV V ++ ++ + TPL++A + VK++L+ +
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDHKISH-LGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL 171
++ PLH +R + E+ LL++ D + N G P+
Sbjct: 163 GKGQDS--PLHAVARTASEELACLLMDFGADTQAK-NAEGKRPV 203
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 75 RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC 134
GH ++ +++Q W + D +PLH A G + VK +LK + +
Sbjct: 13 HGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWH 70
Query: 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188
PL A G+ + LLL ++Q ++ +P+H+AA GHV+ + + IA
Sbjct: 71 TPLFNACVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVNSLIA 122
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
+E+ TPL A G + LL+ N LL + R+SA LAC +G+ ++VK++L+
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ E D + TPL A+ + VK +L+
Sbjct: 90 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 96 DRDESTPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
D + TPL A + G+I +V+ +L+ P K R L A G +I K+LL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLL 87
Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTD-GDTVFHLALR 210
+ D+ +Y+ NG TPL A HVK ++ + S PT + TD G LA+
Sbjct: 88 DCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT----IETDSGYNSMDLAVA 142
Query: 211 FG 212
G
Sbjct: 143 LG 144
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
+E+ TPL A G + LL+ N LL + R+SA LAC +G+ ++VK++L+
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ E D + TPL A+ + VK +L+
Sbjct: 92 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 96 DRDESTPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
D + TPL A + G+I +V+ +L+ P K R L A G +I K+LL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLL 89
Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTD-GDTVFHLALR 210
+ D+ +Y+ NG TPL A HVK ++ + S PT + TD G LA+
Sbjct: 90 DCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT----IETDSGYNSMDLAVA 144
Query: 211 FG 212
G
Sbjct: 145 LG 146
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
+E+ TPL A G + LL+ N LL + R+SA LAC +G+ ++VK++L+
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 107
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
+ E D + TPL A+ + VK +L+
Sbjct: 108 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 96 DRDESTPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
D + TPL A + G+I +V+ +L+ P K R L A G +I K+LL
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYTDIVKMLL 105
Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRF 211
+ D+ +Y+ NG TPL A HVK ++ + S PT T G LA+
Sbjct: 106 DCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT---IETDSGYNSMDLAVAL 161
Query: 212 G 212
G
Sbjct: 162 G 162
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 5/172 (2%)
Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
++ + + S Q D+ LH A+R + K LL + D +Q +N G TPLH
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 97
Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ 233
A + + I + T + DG T LA R L + + ++
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG---MLEDLINSHADVNAV 154
Query: 234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
D G + LH A NN A ++K +K+ +N +T L + G+ E
Sbjct: 155 DDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYE 205
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 166 NGYTPLHQAAING-------------HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
+G+TPL A+ +G ++ FI + N G+T HLA R+
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 213 KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
+ +A L E+ + QD G T LH A+ + + + +I+ D + R +
Sbjct: 70 RSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 273 TAL 275
T L
Sbjct: 127 TPL 129
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 58 ATLLNQER---QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
A+L NQ ++A LA R + K +L S +++ TPLH A+S +
Sbjct: 48 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGV 106
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
+ +++ R + + + PL A+R+ + + L+NS D+
Sbjct: 107 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 151
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 101 TPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
TPL A + G+I+ V+ +L+ P K R L AS G +I LLL D
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYTDIVGLLLERDVD 94
Query: 159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD---TVFHLALRFG 212
+ + Y+ NG TPL A HVK +EA +A LTT+ D T LA+ G
Sbjct: 95 INI-YDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALG 146
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 5/172 (2%)
Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
++ + + S Q D+ LH A+R + K LL + D +Q +N G TPLH
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ 233
A + + I + T + DG T LA R L + + ++
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG---MLEDLINSHADVNAV 153
Query: 234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
D G + LH A NN A ++K +K+ +N +T L + G+ E
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYE 204
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 166 NGYTPLHQAAING-------------HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
+G+TPL A+ +G ++ FI + N G+T HLA R+
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68
Query: 213 KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
+ +A L E+ + QD G T LH A+ + + + +I+ D + R +
Sbjct: 69 RSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 273 TAL 275
T L
Sbjct: 126 TPL 128
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 58 ATLLNQER---QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
A+L NQ ++A LA R + K +L S +++ TPLH A+S +
Sbjct: 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGV 105
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLH 172
+ +++ R + + + PL A+R+ + + L+NS D+ ++ G + LH
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALH 162
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 101 TPLHVAISRGKIDIVKEILK--VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158
TPL A + G+I+ V+ +L+ P K R L AS G +I LLL D
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILA---KERESALSLASTGGYTDIVGLLLERDVD 94
Query: 159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD---TVFHLALRFG 212
+ + Y+ NG TPL A HVK +EA +A LTT+ D T LA+ G
Sbjct: 95 INI-YDWNGGTPLLYAVHGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALG 146
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 7/173 (4%)
Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
++ + + S Q D+ LH A+R + K LL + D +Q +N G TPLH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF-DFTGLLHQ 232
A + + I + T + DG T LA R L S D +
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV--- 121
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
D G + LH A NN A ++ K +K+ +N +T L + G+ E
Sbjct: 122 -DDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYE 172
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 58 ATLLNQER---QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
A+L NQ ++A LA R + K +L S +++ TPLH A+S +
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHAAVSADAQGV 73
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDM 159
+ +++ R + + + PL A+R+ + + L+NS D+
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 7/173 (4%)
Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
++ + + S Q D+ LH A+R + K LL + D +Q +N G TPLH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHA 61
Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF-DFTGLLHQ 232
A + + + + T + DG T LA R L S D +
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV--- 118
Query: 233 QDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
D G + LH A NN A ++ K +K+ +N +T L + G+ E
Sbjct: 119 -DDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNKEETPLFLAAREGSYE 169
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 58 ATLLNQER---QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDI 114
A+L NQ ++A LA R + K +L S +++ TPLH A+S +
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR-TPLHAAVSADAQGV 70
Query: 115 VKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLH 172
+ +L+ R + + + PL A+R+ + + L+NS D+ ++ G + LH
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN-AVDDLGKSALH 127
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 5/172 (2%)
Query: 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQ 173
++ + + S Q D+ LH A+ + K LL + D +Q +N G TPLH
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 174 AAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ 233
A + + I + T + DG T LA R L + + ++
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG---MLEDLINSHADVNAV 153
Query: 234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKE 285
D G + LH A NN A ++K +K+ +N +T L + G+ E
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYE 204
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 166 NGYTPLHQAAING-------------HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFG 212
+G+TPL A+ +G ++ FI + N G T HLA +
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 213 KYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQ 272
+ +A L E+ + QD G T LH A+ + + + +I+ D + R +
Sbjct: 69 RSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 273 TAL 275
T L
Sbjct: 126 TPL 128
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
E PLH+A + +I +LL + L + + + +A A G+ VKL + ++W +
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGL-DDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
Query: 92 EFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKL 151
F T + A+ + IV L PS + A C +H + G+V+ L
Sbjct: 122 XFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSC--IHITIKNGHVDXXIL 179
Query: 152 LLN 154
LL+
Sbjct: 180 LLD 182
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 8/158 (5%)
Query: 66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF 125
SA A +V +V +LN L E+ PLH A + IVK IL
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTKIVK-ILLFSGLD 87
Query: 126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGY-TPLHQAAINGHVKILE 184
Q D L+YA GN + KL + + Y G+ T + A V I+
Sbjct: 88 DSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXF-YGKTGWKTSFYHAVXLNDVSIVS 146
Query: 185 AFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222
F++ P++F+ + H+ ++ G + I L +
Sbjct: 147 YFLSEIPSTFDLAIL--LSCIHITIKNGHVDXXILLLD 182
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 37 EACRQG-NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEE 95
EA R G + E+ L+ F L S LA + GH + +++L ++ +
Sbjct: 8 EAARAGQDDEVRILMANGAPFTTDWLGT---SPLHLAAQYGHFSTTEVLL-RAGVSRDAR 63
Query: 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
+ + TPLH+A S G +IV+ +LK + D + LH+A+ + E+ +LL+
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 156 KPDMALQ 162
D+ Q
Sbjct: 123 GADVHTQ 129
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 136 PLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
PLH A++ G+ T++LL + + + TPLH AA GH I+E + N
Sbjct: 37 PLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHG-ADVN 94
Query: 196 CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
T H A L + +H Q +F T ++I N LAE
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELL---IKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 256 I 256
+
Sbjct: 152 L 152
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 140 ASRIG-NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT 198
A+R G + E+ L+ N P + G +PLH AA GH E + + S + T
Sbjct: 9 AARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDART 64
Query: 199 TDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257
T H+A G N + L D +D T LH A N+ ++ E +I
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNA----KDMLKMTALHWATEHNHQEVVELLI 120
Query: 258 KKTKVDKNCRNYTNQTALDVLKESGTKE 285
K D + ++ +TA D+ ++G ++
Sbjct: 121 -KYGADVHTQSKFCKTAFDISIDNGNED 147
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLML 85
TPLH A +G+A I +LLK V + + +A A H VV+L++
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLI 120
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 20/201 (9%)
Query: 101 TPLHVAISRG---------------KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN 145
TPL +A RG ++ ++L DK LH A+R
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 146 VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVF 205
+ K LL++ D Q +N G TPLH A + + + + + T+ N DG T
Sbjct: 64 ADAAKRLLDAGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 206 HLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKN 265
LA R + + ++ D G T LH A NN + A I+ +++
Sbjct: 123 ILAARLAIEG---MVEDLITADADINAADNSGKTALHWAAAVNNTE-AVNILLMHHANRD 178
Query: 266 CRNYTNQTALDVLKESGTKEA 286
++ ++T L + G+ EA
Sbjct: 179 AQDDKDETPLFLAAREGSYEA 199
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160
TPLH A++ + + + +L+ R + + PL A+R+ + + L+ + D+
Sbjct: 86 TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 145
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220
+N+G T LH AA + + + + + + +T LA R G Y A L
Sbjct: 146 -AADNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 221 AESF 224
++F
Sbjct: 204 LDNF 207
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+A + + NG TPLH AA NGH+++++ + + N
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAG-ADVNAQDK 70
Query: 200 DGDTVFHLALRFG 212
G T F +++ G
Sbjct: 71 FGKTAFDISIDNG 83
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
DKN PLH A+R G++E+ KLLL + D+ Q + G T + NG+ + E
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLAE 89
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
+G T HLA R G L E+ ++ QD+FG T ++I N LAE +
Sbjct: 38 NGSTPLHLAARNGHLEVVKLLLEA---GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
L A R G + V++++ + +D++ STPLH+A G +++VK +L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQER--QSAFLLACRRGHVNVV 81
VAA ++ TPLH A R G+ E+ LLL+ A + Q++ ++AF ++ G+ ++
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVNAQDKFGKTAFDISIDNGNEDLA 88
Query: 82 KLM 84
+++
Sbjct: 89 EIL 91
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 99 ESTPLHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGNVEITKLLLNSK 156
+ TPLH+A+ + +I + +L + C E D PLH A G + +L S
Sbjct: 42 QQTPLHLAVITNQPEIAEALLG---AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 157 PDMALQ-----YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
L N NG+T LH A+I+G++ I+E ++ +G T HLA+
Sbjct: 99 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 197 LTTDGDTVFHLAL-RFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
LT DGD+ HLA+ K + + L+ Q+ T LHLA++ N ++AE
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN 298
++ D R++ T L + E G + QS P+
Sbjct: 61 LL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 33 TPLHEACRQGNAEISALLLK--TNLFVATLL---NQERQSAFLLACRRGHVNVVKLMLNQ 87
TPLH AC QG +L + T + ++L N + LA G++ +V+L+++
Sbjct: 77 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 136
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR 133
+ +E + T LH+A+ D+V +LK AD NR
Sbjct: 137 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG------ADVNR 176
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 97 RDESTPLHVAISRGKIDIVKEIL---KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
D + LH+AI + + E++ K +F + + PLH A EI + LL
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTS-----FNCLTTDGDTVFHLA 208
+ D L+ + G TPLH A G + + S T +G T HLA
Sbjct: 63 GAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 209 LRFGKYNAFIFLAESF--DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G Y + L S D Q+ G T LHLA+ N L ++K
Sbjct: 122 SIHG-YLGIVELLVSLGADVNA---QEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 7/148 (4%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87
N +TPLH A EI+ LL L + + LAC +G + V ++
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 88 SWLMEFEE-----DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASR 142
+ + T LH+A G + IV+ ++ + Q N LH A
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Query: 143 IGNVEITKLLLNSKPDMALQYNNNGYTP 170
+ N ++ LLL D+ + GY+P
Sbjct: 158 LQNPDLVSLLLKCGADVN-RVTYQGYSP 184
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A+R G + ++L+ + D+ + + +GYTPLH AA GH++I+E + + N
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDK 66
Query: 200 DGDTVFHLALRFG 212
G T F +++ G
Sbjct: 67 FGKTAFDISIDNG 79
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN 165
A G+ D V+ IL + DK+ PLH A+R G++EI ++LL + D+ Q +
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ-DK 66
Query: 166 NGYTPLHQAAINGHVKILE 184
G T + NG+ + E
Sbjct: 67 FGKTAFDISIDNGNEDLAE 85
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
L A R G + V++++ + +D+D TPLH+A G ++IV+ +LK
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 99 ESTPLHVAISRGKIDIVKEILKVRPSFC--EQADKNRCLPLHYASRIGNVEITKLLLNSK 156
+ TPLH+A+ + +I + +L + C E D PLH A G + +L S
Sbjct: 45 QQTPLHLAVITNQPEIAEALLG---AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 157 PDMALQ-----YNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF 211
L N NG+T LH A+I+G++ I+E ++ +G T HLA+
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 197 LTTDGDTVFHLAL-RFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255
LT DGD+ HLA+ K + + L+ Q+ T LHLA++ N ++AE
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN 298
++ D R++ T L + E G + QS P+
Sbjct: 64 LL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 33 TPLHEACRQGNAEISALLLK--TNLFVATLL---NQERQSAFLLACRRGHVNVVKLMLNQ 87
TPLH AC QG +L + T + ++L N + LA G++ +V+L+++
Sbjct: 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139
Query: 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR 133
+ +E + T LH+A+ D+V +LK AD NR
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG------ADVNR 179
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 97 RDESTPLHVAISRGKIDIVKEIL---KVRPSFCEQADKNRCLPLHYASRIGNVEITKLLL 153
D + LH+AI + + E++ K +F + + PLH A EI + LL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 154 NSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTS-----FNCLTTDGDTVFHLA 208
+ D L+ + G TPLH A G + + S T +G T HLA
Sbjct: 66 GAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 209 LRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258
G Y + L S + Q+ G T LHLA+ N L ++K
Sbjct: 125 SIHG-YLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 7/144 (4%)
Query: 32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLM 91
+TPLH A EI+ LL L + + LAC +G + V ++
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 92 EFEE-----DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
+ + T LH+A G + IV+ ++ + Q N LH A + N
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 147 EITKLLLNSKPDMALQYNNNGYTP 170
++ LLL D+ + GY+P
Sbjct: 165 DLVSLLLKCGADVN-RVTYQGYSP 187
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A RG V V+ +L++ + +R T L V + G I E+LK S Q D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ-DT 72
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP 191
+ P+H A+R G ++ K+L+ D+ + + G P+H A GH ++ +F+A+
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV-SFLAAE- 129
Query: 192 TSFNCLTTDGDTVFHLALRFG 212
+ + G T LAL+ G
Sbjct: 130 SDLHRRDARGLTPLELALQRG 150
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+P+H+A R G + +L++ V + + LA + GH VV + +S L
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDL-- 132
Query: 93 FEEDRDESTPLHVAISRGKIDIV 115
D TPL +A+ RG D+V
Sbjct: 133 HRRDARGLTPLELALQRGAQDLV 155
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADK 131
A RG V V+ +L++ + +R T L V + G I E+LK S Q D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ-DT 66
Query: 132 NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP 191
+ P+H A+R G ++ K+L+ D+ + + G P+H A GH ++ +F+A+
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVV-SFLAAE- 123
Query: 192 TSFNCLTTDGDTVFHLALRFG 212
+ + G T LAL+ G
Sbjct: 124 SDLHRRDARGLTPLELALQRG 144
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 33 TPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+P+H+A R G + +L++ V + + LA + GH VV + +S L
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDL-- 126
Query: 93 FEEDRDESTPLHVAISRGKIDIV 115
D TPL +A+ RG D+V
Sbjct: 127 HRRDARGLTPLELALQRGAQDLV 149
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189
A+R G + ++L+ + D+A + + NG TPLH AA NGH+++++ + +
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 130 DKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILE 184
DKN PLH A+R G++E+ KLLL + D+ Q + G T + NG+ + E
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAE 107
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQER--QSAFLLACRRGHVNVV 81
VAA ++ TPLH A R G+ E+ LLL+ A + Q++ ++AF ++ G+ ++
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG---ADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 82 KLM 84
+++
Sbjct: 107 EIL 109
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120
L A R G + V++++ + +D++ STPLH+A G +++VK +L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLE 78
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256
+G T HLA R G L E+ + QD+FG T ++I N LAE +
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEA---GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCL-----PLHYASRIGNVEITKLLLNSKPDMA 160
A+ G +D VK+ + + D NR L PLHYA+ G +EI + LL D+
Sbjct: 14 ALKNGDLDEVKDYV------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIA 188
+ + TPL A GHV ++ ++
Sbjct: 68 AP-DKHHITPLLSAVYEGHVSCVKLLLS 94
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
PLH A G+++I+ E L ++ + DK+ PL A G+V KLLL+ D +
Sbjct: 43 PLHYAADCGQLEIL-EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 162 Q 162
+
Sbjct: 102 K 102
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 106 AISRGKIDIVKEILKVRPSFCEQADKNRCL-----PLHYASRIGNVEITKLLLNSKPDMA 160
A+ G +D VK+ + + D NR L PLHYA+ G +EI + LL D+
Sbjct: 9 ALKNGDLDEVKDYV------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIA 188
+ + TPL A GHV ++ ++
Sbjct: 63 AP-DKHHITPLLSAVYEGHVSCVKLLLS 89
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 102 PLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161
PLH A G+++I+ E L ++ + DK+ PL A G+V KLLL+ D +
Sbjct: 38 PLHYAADCGQLEIL-EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Query: 162 QYNNNGYTPLHQAAINGHVKIL 183
+ +G T L +A N +K L
Sbjct: 97 K-GPDGLTAL-EATDNQAIKAL 116
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 137 LHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC 196
LHYA+++ N I K L+ K + + +G TP+ AA G ++++ I +
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 197 LTTDGDTVFHLALRFGKYNAFIFLAESFD 225
TD H A + + N + + FD
Sbjct: 343 DATD-----HTARQLAQANNHHNIVDIFD 366
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
G ++ + ++ D +L N+ G T LH A GH +I++ F+ + N +DG T
Sbjct: 48 GEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWT 105
Query: 204 VFHLALRFGKYNAFIFLAES 223
H A FL ES
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 75 RGHVNVVKLMLNQSWLMEFE-------EDRDESTP-------LHVAISRGKIDIVKEILK 120
R N + L+L+ S EF+ E D S P LH A+ G +IVK +++
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 121 VRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
+ AD + PLH A+ NV++ K L+ S
Sbjct: 92 FGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 137 LHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC 196
LH A G+ EI K L+ ++ +++G+TPLH AA +V++ + + S F
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 197 LTTDGDT 203
+D T
Sbjct: 133 TYSDMQT 139
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT 203
G ++ + ++ D +L N+ G T LH A GH +I++ F+ + N +DG T
Sbjct: 48 GEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVK-FLVQFGVNVNAADSDGWT 105
Query: 204 VFHLALRFGKYNAFIFLAES 223
H A FL ES
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
T LH A+ G +IVK +++ + AD + PLH A+ NV++ K L+ S
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 137 LHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNC 196
LH A G+ EI K L+ ++ +++G+TPLH AA +V++ + + S F
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 197 LTTDGDT 203
+D T
Sbjct: 133 TYSDMQT 139
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 110 GKIDIVKEILKV--RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG 167
G++++V++ +K PS Q ++ LH A N I L+ + ++ +++G
Sbjct: 32 GELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHG 87
Query: 168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLA--LRFGKYNAFIFLAESFD 225
+TPLH AA I A + F +DG T F R G + +LA+
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147
Query: 226 FTGLLH 231
GL++
Sbjct: 148 SMGLMN 153
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 19/157 (12%)
Query: 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLN 86
V + L++ + + +Q A S ++L +ATL Q+ L R G++N
Sbjct: 127 VQQLLDSGVCKVDKQNRAGYSPIMLTA---LATLKTQDDIETVLQLFRLGNINAKASQAG 183
Query: 87 QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146
Q+ LM +A+S G++D+VK +L Q D + L A G+
Sbjct: 184 QTALM-------------LAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHK 229
Query: 147 EITKLLLN-SKPDMALQYNNNGYTPLHQAAINGHVKI 182
EI LLL D++L + +G T L A G +I
Sbjct: 230 EIAGLLLAVPSCDISLT-DRDGSTALMVALDAGQSEI 265
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 129 ADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI------NGHVKI 182
AD N LHY+ N + + LL+S + N GY+P+ A+ + +
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETV 166
Query: 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF-IFLAESFDFTGLLHQQDQFGNTVL 241
L+ F + + + G T LA+ G+ + LA D ++ QD G+T L
Sbjct: 167 LQLFRLGNINAKA--SQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQDDDGSTAL 220
Query: 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFS 288
A + ++A ++ D + + TAL V ++G E S
Sbjct: 221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQ 63
A G +++V ++ C V ++ T L AC G+ EI+ LLL +L ++
Sbjct: 190 AVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR 248
Query: 64 ERQSAFLLACRRGHVNVVKLM 84
+ +A ++A G + ++
Sbjct: 249 DGSTALMVALDAGQSEIASML 269
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 161 LQYNNNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGKYNAFI 218
++ ++ +H AA G + I + SPT N G T HLA +FG +
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAK 70
Query: 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
+LA + L H G +HLA+ N L +++ K
Sbjct: 71 YLASVGEVHSLWH-----GQKPIHLAVXANKTDLVVALVEGAK 108
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD---KNRCLPLHYASRIGNVE 147
M D D TPLH+A+ +G + V ++ + + D R PLH A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 148 ITKLLLNSKPD-MALQYNNNGYTPLHQAAINGHVKILEAFIAS-SPTSFN--CLTTDGDT 203
+ +LL+ + MAL + +G T H A + L A + S +P + + DG T
Sbjct: 61 VVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 204 VFHLAL 209
H+A+
Sbjct: 119 ALHVAV 124
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 12/189 (6%)
Query: 28 NEKLETPLHEACRQGNAEISALLLKTNLFVA-----TLLNQERQSAFLLACRRGHVNVVK 82
+E +TPLH A QGN + A+ NLF + N RQ+ LA +VV+
Sbjct: 6 DEDGDTPLHIAVVQGN--LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 83 LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEIL-KVRPSFCEQADKN--RCLPLHY 139
L++ + DR T H+A ++ +L P + +N LH
Sbjct: 64 LLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199
A E +LLL D+ +G +PL A N + +++ + + N
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMY 181
Query: 200 DGDTVFHLA 208
G + H A
Sbjct: 182 SGSSALHSA 190
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 86 NQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144
++ W ++ E E+ D TPLHVA+ ++V+ + + PLH A
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 145 NVEITKLLLNSKPD-MALQYNNNGYTPLHQAAINGH---VKILEAFIASSP 191
+ +LLL + D A Y G TPL A + + ++L A A P
Sbjct: 204 AASVLELLLKAGADPTARMY--GGRTPLGSALLRPNPILARLLRAHGAPEP 252
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 194 FNCLTTDGDTVFHLALRFGKYNAFI-FLAESFDFTGLLHQQDQFGNTVLHLAIL 246
F +T DGDT HLA+ ++ F+ FL L Q+ G T LHLA +
Sbjct: 2 FGYVTEDGDTALHLAV-IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 86 NQSWLMEFE-EDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144
++ W ++ E E+ D TPLHVA+ ++V+ + + PLH A
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203
Query: 145 NVEITKLLLNSKPD-MALQYNNNGYTPLHQAAINGH---VKILEAFIASSP 191
+ +LLL + D A Y G TPL A + + ++L A A P
Sbjct: 204 AASVLELLLKAGADPTARMY--GGRTPLGSALLRPNPILARLLRAHGAPEP 252
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 194 FNCLTTDGDTVFHLALRFGKYNAFI-FLAESFDFTGLLHQQDQFGNTVLHLAIL 246
F +T DGDT HLA+ ++ F+ FL L Q+ G T LHLA +
Sbjct: 2 FGYVTEDGDTALHLAV-IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAI 54
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 99 ESTPLHVAI---SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155
+ T LH+A+ R + IV +++ + +Q K LHY N E KLLL
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS-TALHYCCLTDNAECLKLLLRG 227
Query: 156 KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFN 195
K + + N +G TPL A H E + FN
Sbjct: 228 KASIEIA-NESGETPLDIAKRLKHEHCEELLTQALSGRFN 266
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK 261
+T HLA+R + + +G L +Q G+T LH L +N + + +++ K
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-K 228
Query: 262 VDKNCRNYTNQTALDVLK 279
N + +T LD+ K
Sbjct: 229 ASIEIANESGETPLDIAK 246
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLL 61
+A GFG ++TEI + L AA+ T + EAC++GN + + T V +L
Sbjct: 229 QALRGFGARVIITEIDPI-NALQAAMEGYEVTTMDEACKEGN-----IFVTTTGCVDIIL 282
Query: 62 NQ--ERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+ E+ + C GH +V ++ WL E
Sbjct: 283 GRHFEQMKDDAIVCNIGHFDV---EIDVKWLNE 312
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLL 61
+A GFG ++TEI + L AA+ T + EAC++GN + + T V +L
Sbjct: 229 QALRGFGARVIITEIDPI-NALQAAMEGYEVTTMDEACKEGN-----IFVTTTGCVDIIL 282
Query: 62 NQ--ERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+ E+ + C GH +V ++ WL E
Sbjct: 283 GRHFEQMKDDAIVCNIGHFDV---EIDVKWLNE 312
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLL 61
+A GFG ++TEI + L AA+ T + EAC++GN + + T V +L
Sbjct: 229 QALRGFGARVIITEIEPI-NALQAAMEGYEVTTMDEACKEGN-----IFVTTTGCVDIIL 282
Query: 62 NQ--ERQSAFLLACRRGHVNVVKLMLNQSWLME 92
+ E+ + C GH +V ++ WL E
Sbjct: 283 GRHFEQMKDDAIVCNIGHFDV---EIDVKWLNE 312
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVD 263
V HLA++ + + G L + GNT LH A L N + ++K +
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 264 KNCRNYTNQTALDVLKESGTKEA 286
N +TALD+ ++ KE
Sbjct: 253 GTV-NEAGETALDIARKKHHKEC 274
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVD 263
V HLA++ + + G L + GNT LH A L N + ++K +
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL- 232
Query: 264 KNCRNYTNQTALDVLKESGTKEA 286
N +TALD+ ++ KE
Sbjct: 233 VGTVNEAGETALDIARKKHHKEC 255
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 203 TVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV 262
T +A G NA L E+FD L +D G+T L A+ N +AE ++ K
Sbjct: 37 TPLMVACMLGMENAIDKLVENFD---KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS- 92
Query: 263 DKNCRNYTNQTAL 275
+ N ++++ +T L
Sbjct: 93 NVNTKDFSGKTPL 105
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 363 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 405
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 297 PNGSPKHLQQYKDLSKRQIKELSKRYKSRRDKKNELQREALQN 339
P SP HL+ Y D S RQI + K DK+ ++ A+ N
Sbjct: 362 PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMN 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,256,141
Number of Sequences: 62578
Number of extensions: 557008
Number of successful extensions: 2256
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 426
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)