Query 040043
Match_columns 539
No_of_seqs 561 out of 3195
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 7.7E-44 2.6E-48 371.5 31.2 291 1-298 51-371 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-43 8.9E-48 367.5 31.4 289 1-299 18-306 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 8.2E-42 2.8E-46 334.1 29.2 266 29-299 3-281 (285)
4 4g8k_A 2-5A-dependent ribonucl 100.0 4.4E-41 1.5E-45 338.4 30.5 287 1-300 29-330 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-40 4.3E-45 325.7 28.4 261 1-269 9-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 9.1E-40 3.1E-44 329.7 27.3 269 1-278 28-320 (351)
7 4g8k_A 2-5A-dependent ribonucl 100.0 3.2E-39 1.1E-43 324.7 28.0 269 27-300 21-302 (337)
8 3d9h_A CDNA FLJ77766, highly s 100.0 3.5E-39 1.2E-43 316.7 23.8 253 29-293 13-275 (285)
9 3d9h_A CDNA FLJ77766, highly s 100.0 4.5E-39 1.5E-43 316.0 22.9 254 1-266 19-282 (285)
10 2xai_A ASB-9, ankyrin repeat a 100.0 4.6E-39 1.6E-43 311.7 22.2 251 30-292 2-259 (261)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-39 6.2E-44 331.3 18.3 261 25-296 88-371 (373)
12 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-38 4.6E-43 307.0 21.7 228 24-257 3-243 (253)
13 3ljn_A Hypothetical protein; a 100.0 3.5E-39 1.2E-43 328.1 16.9 261 24-294 13-312 (364)
14 3utm_A Tankyrase-1; tankyrase, 100.0 3.1E-37 1.1E-41 311.1 27.4 276 24-307 17-316 (351)
15 2xai_A ASB-9, ankyrin repeat a 100.0 4.1E-38 1.4E-42 305.0 17.9 247 1-257 7-258 (261)
16 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-38 6.3E-43 323.8 14.1 250 1-259 98-368 (373)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 3.1E-37 1.1E-41 297.4 21.5 231 59-296 4-248 (253)
18 3b7b_A Euchromatic histone-lys 100.0 9.2E-37 3.2E-41 290.6 24.3 227 24-257 4-230 (237)
19 1k1a_A B-cell lymphoma 3-encod 100.0 4.3E-37 1.5E-41 293.5 20.7 229 24-258 2-237 (241)
20 1oy3_D Transcription factor in 100.0 3.8E-37 1.3E-41 300.9 20.5 252 24-282 2-269 (282)
21 3ljn_A Hypothetical protein; a 100.0 8.7E-38 3E-42 317.8 15.5 252 1-259 24-311 (364)
22 3aji_A 26S proteasome non-ATPa 100.0 2.3E-36 7.7E-41 286.8 23.1 224 28-258 3-226 (231)
23 2dzn_A Probable 26S proteasome 100.0 3.6E-36 1.2E-40 284.7 22.4 210 31-245 2-216 (228)
24 3b7b_A Euchromatic histone-lys 100.0 1.5E-35 5.1E-40 282.2 25.0 225 59-291 5-230 (237)
25 1k1a_A B-cell lymphoma 3-encod 100.0 4.4E-36 1.5E-40 286.4 20.1 227 59-293 3-238 (241)
26 2dzn_A Probable 26S proteasome 100.0 1.2E-35 4.1E-40 281.1 21.9 213 65-281 2-218 (228)
27 3aji_A 26S proteasome non-ATPa 100.0 2.6E-35 8.8E-40 279.5 23.0 226 62-294 3-228 (231)
28 3eu9_A Huntingtin-interacting 100.0 9E-35 3.1E-39 276.7 23.7 228 25-259 3-232 (240)
29 1oy3_D Transcription factor in 100.0 1.9E-35 6.6E-40 288.8 17.1 244 1-249 13-270 (282)
30 1s70_B 130 kDa myosin-binding 100.0 3.3E-35 1.1E-39 290.1 18.2 262 3-280 4-274 (299)
31 4b93_B Ankyrin repeat domain-c 100.0 1.7E-35 5.8E-40 287.6 14.7 223 27-283 7-230 (269)
32 3kea_A K1L; tropism, ANK repea 100.0 7.3E-35 2.5E-39 285.9 19.2 242 5-267 7-250 (285)
33 3eu9_A Huntingtin-interacting 100.0 9.3E-34 3.2E-38 269.7 25.3 231 60-297 4-236 (240)
34 4b93_B Ankyrin repeat domain-c 100.0 3.1E-35 1.1E-39 285.8 15.3 209 61-302 7-216 (269)
35 2f8y_A Notch homolog 1, transl 100.0 3.2E-34 1.1E-38 270.4 20.7 211 42-258 2-212 (223)
36 2f8y_A Notch homolog 1, transl 100.0 2.7E-34 9.3E-39 270.9 19.6 214 8-225 2-215 (223)
37 1sw6_A Regulatory protein SWI6 100.0 1.2E-35 4.2E-40 297.3 6.2 258 5-282 27-327 (327)
38 3kea_A K1L; tropism, ANK repea 100.0 1.7E-33 5.8E-38 276.2 20.5 237 40-298 8-248 (285)
39 1s70_B 130 kDa myosin-binding 100.0 3.6E-34 1.2E-38 282.6 15.7 242 1-258 44-285 (299)
40 2rfa_A Transient receptor pote 100.0 1.7E-31 5.8E-36 253.4 22.9 197 30-259 2-219 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 4.2E-33 1.4E-37 265.3 10.2 214 26-279 3-227 (236)
42 2rfa_A Transient receptor pote 100.0 4E-31 1.4E-35 250.8 21.7 208 64-298 2-224 (232)
43 3hra_A Ankyrin repeat family p 100.0 9E-31 3.1E-35 242.5 22.5 191 29-222 3-199 (201)
44 1ikn_D Protein (I-kappa-B-alph 100.0 1.7E-32 5.8E-37 261.2 10.9 199 95-298 4-211 (236)
45 3hra_A Ankyrin repeat family p 100.0 1.1E-30 3.6E-35 242.1 22.1 191 98-292 4-199 (201)
46 1sw6_A Regulatory protein SWI6 100.0 2.5E-32 8.5E-37 273.3 10.2 230 4-248 54-327 (327)
47 2pnn_A Transient receptor pote 100.0 1.5E-30 5.1E-35 253.5 15.7 223 24-275 6-271 (273)
48 2etb_A Transient receptor pote 100.0 3.4E-30 1.2E-34 248.3 16.5 201 31-259 2-243 (256)
49 2etb_A Transient receptor pote 100.0 2E-30 6.9E-35 250.0 14.8 186 1-190 6-244 (256)
50 4gpm_A Engineered protein OR26 100.0 6.5E-30 2.2E-34 229.9 16.0 155 34-192 7-161 (169)
51 2pnn_A Transient receptor pote 100.0 2.1E-30 7.3E-35 252.3 13.4 202 1-204 17-270 (273)
52 4gpm_A Engineered protein OR26 100.0 4.6E-29 1.6E-33 224.4 18.3 155 2-160 9-163 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 4E-29 1.4E-33 241.3 14.5 207 28-259 2-247 (260)
54 4hbd_A KN motif and ankyrin re 100.0 8E-29 2.7E-33 241.7 14.6 196 28-225 73-274 (276)
55 3jxi_A Vanilloid receptor-rela 100.0 3.6E-29 1.2E-33 241.7 11.9 188 1-191 9-249 (260)
56 4hbd_A KN motif and ankyrin re 100.0 2.3E-28 7.9E-33 238.4 14.9 194 64-262 75-275 (276)
57 2rfm_A Putative ankyrin repeat 100.0 8.2E-28 2.8E-32 221.2 16.4 163 23-189 27-189 (192)
58 2aja_A Ankyrin repeat family p 100.0 2.8E-30 9.6E-35 261.6 -0.7 245 27-289 88-367 (376)
59 3v30_A DNA-binding protein rfx 100.0 1.3E-27 4.4E-32 215.7 16.3 158 31-191 2-159 (172)
60 3v30_A DNA-binding protein rfx 100.0 1.6E-27 5.5E-32 215.0 16.5 169 100-274 3-171 (172)
61 3v31_A Ankyrin repeat family A 99.9 3.2E-27 1.1E-31 212.0 16.4 158 30-191 2-159 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 99.9 6E-27 2E-31 209.0 15.1 157 30-190 4-160 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-26 4.5E-31 208.6 17.0 159 27-189 10-168 (169)
64 2rfm_A Putative ankyrin repeat 99.9 1.9E-26 6.5E-31 212.0 16.9 160 59-222 29-188 (192)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.9E-26 1E-30 204.4 16.6 156 64-223 4-159 (162)
66 1awc_B Protein (GA binding pro 99.9 2.8E-26 9.5E-31 202.8 16.2 150 32-186 3-152 (153)
67 3twr_A Tankyrase-2; ankyrin re 99.9 7.8E-27 2.7E-31 209.0 12.4 160 27-190 4-163 (165)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.6E-26 8.9E-31 206.6 15.7 152 1-156 18-169 (169)
69 3v31_A Ankyrin repeat family A 99.9 8.3E-26 2.9E-30 202.7 18.1 153 99-257 3-155 (167)
70 2vge_A RELA-associated inhibit 99.9 2E-29 7E-34 238.7 -6.6 189 62-257 18-208 (229)
71 3f6q_A Integrin-linked protein 99.9 5.1E-26 1.7E-30 206.7 15.3 161 29-192 3-163 (179)
72 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.7E-26 2.3E-30 200.9 15.6 153 31-188 2-154 (156)
73 1awc_B Protein (GA binding pro 99.9 1.8E-25 6.1E-30 197.6 17.3 150 66-220 3-152 (153)
74 3f6q_A Integrin-linked protein 99.9 7E-26 2.4E-30 205.8 15.1 168 98-271 4-171 (179)
75 2aja_A Ankyrin repeat family p 99.9 8.4E-29 2.9E-33 250.8 -5.0 237 1-257 96-369 (376)
76 2vge_A RELA-associated inhibit 99.9 4.6E-28 1.6E-32 229.4 -0.9 202 81-292 1-209 (229)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.5E-25 8.5E-30 197.1 16.3 151 101-258 4-154 (156)
78 3twr_A Tankyrase-2; ankyrin re 99.9 2.3E-25 7.9E-30 199.4 14.1 157 62-222 5-161 (165)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.6E-26 2.3E-30 216.1 7.1 157 29-190 3-162 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-25 3.6E-30 214.7 7.7 182 63-249 3-193 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-23 4.9E-28 186.0 11.2 146 24-174 5-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 1.1E-23 3.8E-28 182.1 10.1 131 24-158 5-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 2.7E-23 9.2E-28 184.2 11.4 145 127-278 6-151 (156)
84 3t8k_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 190.1 10.1 154 31-189 6-176 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.5E-22 5.1E-27 175.0 11.7 128 59-190 6-134 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.1E-22 1.8E-26 168.5 14.5 126 30-158 1-126 (126)
87 3deo_A Signal recognition part 99.9 1.7E-23 5.7E-28 190.8 4.6 166 3-189 6-181 (183)
88 3t8k_A Uncharacterized protein 99.9 5.6E-23 1.9E-27 187.7 8.0 152 66-221 7-174 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 4.7E-22 1.6E-26 171.8 12.6 123 30-155 13-135 (136)
90 3ui2_A Signal recognition part 99.9 5.8E-23 2E-27 196.3 6.3 139 63-223 43-182 (244)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 1.7E-21 5.7E-26 168.4 13.4 126 61-189 10-135 (136)
92 3ui2_A Signal recognition part 99.9 4E-23 1.4E-27 197.4 2.9 167 65-258 15-181 (244)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.2E-21 1.4E-25 162.8 15.1 125 64-191 1-125 (126)
94 3deo_A Signal recognition part 99.9 5.6E-23 1.9E-27 187.3 3.7 139 62-222 41-180 (183)
95 3c5r_A BARD-1, BRCA1-associate 99.8 9.6E-22 3.3E-26 170.0 7.9 128 26-156 5-132 (137)
96 3c5r_A BARD-1, BRCA1-associate 99.8 2.4E-21 8.1E-26 167.5 7.1 125 60-187 5-129 (137)
97 3ehr_A Osteoclast-stimulating 99.8 4.2E-21 1.4E-25 180.5 8.9 135 24-161 66-201 (222)
98 2b0o_E UPLC1; arfgap, structur 99.8 7.4E-21 2.5E-25 187.3 9.6 144 62-214 148-299 (301)
99 3aaa_C Myotrophin, protein V-1 99.8 1.4E-20 4.9E-25 159.4 9.0 109 29-140 5-113 (123)
100 3ehr_A Osteoclast-stimulating 99.8 7.4E-21 2.5E-25 178.8 7.6 139 128-271 68-206 (222)
101 3aaa_C Myotrophin, protein V-1 99.8 2.4E-20 8.3E-25 158.0 9.7 114 62-178 4-117 (123)
102 2b0o_E UPLC1; arfgap, structur 99.8 2.6E-20 9E-25 183.3 11.4 144 96-250 148-299 (301)
103 1dcq_A PYK2-associated protein 99.8 1.2E-18 4.3E-23 169.4 16.0 120 135-258 132-259 (278)
104 1dcq_A PYK2-associated protein 99.8 2.1E-18 7.3E-23 167.7 15.4 126 168-297 131-264 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4.8E-18 1.7E-22 136.1 11.4 91 31-123 2-92 (93)
106 3jue_A Arfgap with coiled-coil 99.8 3.7E-18 1.3E-22 172.0 13.3 147 130-281 196-347 (368)
107 3jue_A Arfgap with coiled-coil 99.8 3.7E-18 1.3E-22 172.0 12.7 148 98-248 198-348 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.7 1.7E-18 5.7E-23 182.8 10.4 141 27-176 128-276 (497)
109 3lvq_E ARF-GAP with SH3 domain 99.7 4E-18 1.4E-22 179.9 13.2 140 63-205 130-277 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.7 7.8E-18 2.7E-22 134.9 11.3 91 65-157 2-92 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.7 8.5E-18 2.9E-22 140.3 8.5 106 62-170 6-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 1.3E-17 4.4E-22 139.2 9.0 108 26-136 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 1.3E-15 4.3E-20 126.1 8.9 93 24-118 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 4.9E-15 1.7E-19 122.5 9.7 92 127-220 18-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 67.1 4.1 0.00014 39.8 4.0 27 232-258 212-238 (351)
116 4ev6_A Magnesium transport pro 63.2 23 0.0008 34.1 8.6 20 426-445 282-301 (339)
117 3gvo_A Pumilio 2, pumilio homo 57.8 14 0.00046 36.0 5.8 25 27-51 69-93 (351)
118 2iub_A CORA, divalent cation t 53.7 23 0.00077 34.6 6.7 20 426-445 306-325 (363)
119 2knc_B Integrin beta-3; transm 49.4 33 0.0011 25.1 5.3 33 455-487 11-43 (79)
120 3k49_A MRNA-binding protein PU 38.7 51 0.0017 32.0 6.6 60 26-85 73-134 (369)
121 2knc_A Integrin alpha-IIB; tra 38.0 47 0.0016 22.3 4.1 26 450-475 8-33 (54)
122 2l8s_A Integrin alpha-1; trans 26.6 1.1E+02 0.0039 20.4 4.5 23 452-474 7-29 (54)
123 2k1a_A Integrin alpha-IIB; sin 26.5 1.2E+02 0.0043 19.1 4.5 23 451-473 7-29 (42)
124 3mkq_B Coatomer subunit alpha; 24.9 2.1E+02 0.0073 24.4 7.3 95 4-120 44-139 (177)
125 3k49_A MRNA-binding protein PU 24.9 61 0.0021 31.5 4.4 86 60-145 73-162 (369)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.7e-44 Score=371.51 Aligned_cols=291 Identities=27% Similarity=0.371 Sum_probs=189.3
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||+|++.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.++
T Consensus 51 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~ 128 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVET 128 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHH
Confidence 5788888888888888888877 6778888888888888888888888888888776 5567778888888888888888
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 160 (539)
+++|++++.... ..+..|.||||.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.++++.
T Consensus 129 v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 129 VLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206 (437)
T ss_dssp HHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred HHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 888887776654 45666777777777777777777777766655 5556666677777777666666666666666655
Q ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc--------------
Q 040043 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF-------------- 226 (539)
Q Consensus 161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~-------------- 226 (539)
.. +.+|.||||+|+..|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|++....
T Consensus 207 ~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 284 (437)
T 1n11_A 207 SP-AWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284 (437)
T ss_dssp CC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred Cc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 43 55556666666666666666655554432 444455555555555555555555555543110
Q ss_pred ----------------ccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHH
Q 040043 227 ----------------TGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSE 290 (539)
Q Consensus 227 ----------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~ 290 (539)
+..++.+|..|+||||+|+..++.+++++|++. |+++|.+|..|.||||+|+..|+.++++.+
T Consensus 285 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHHHHHHH
Confidence 233444555555555555555555555555532 555555555555555555555555555555
Q ss_pred hhhccCCC
Q 040043 291 LQSVEEPN 298 (539)
Q Consensus 291 l~~~~~~~ 298 (539)
++.+++++
T Consensus 364 l~~ga~~~ 371 (437)
T 1n11_A 364 LKNGASPN 371 (437)
T ss_dssp HHTTCCSC
T ss_pred HHCcCCCC
Confidence 55554444
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-43 Score=367.48 Aligned_cols=289 Identities=25% Similarity=0.363 Sum_probs=263.1
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||+||..|+.++|++|++.+.+ ++.+|..|.||||+|++.|+.+++++|++.++++ +..+.+|.||||+|+..|+.++
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHH
Confidence 6899999999999999999877 6888999999999999999999999999999887 6688999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 160 (539)
+++|++++.+++ ..+..|.||||+|+..|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 96 v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 96 VKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp HHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 999999998877 57889999999999999999999999998876 6678899999999999999999999999999998
Q ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH
Q 040043 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240 (539)
Q Consensus 161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~ 240 (539)
.. +..|.||||.|+..|+.++++.|++.+.. ++..+.+|.||||+|+..++.+++++|++. +..++.+|..|+||
T Consensus 174 ~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~ 248 (437)
T 1n11_A 174 AA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANAESVQGVTP 248 (437)
T ss_dssp CC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCH
T ss_pred CC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCH
Confidence 76 89999999999999999999999988755 677888999999999999999999999987 44577888889999
Q ss_pred HHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043 241 LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG 299 (539)
Q Consensus 241 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~ 299 (539)
||+|+..++.+++++|++ .+++++..|..|.|||++|+..|+.++++.+++.+.+.+.
T Consensus 249 L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 249 LHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp HHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred HHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence 999999999999998885 4888888888888888888888888888888887666543
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.2e-42 Score=334.10 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=244.9
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 108 (539)
.+|+||||.|++.|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+.
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH
Confidence 4688999999999999999999999998866558889999999999999999999999998877 578899999999999
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccc---------ccCCCCHHHHHHHcCC
Q 040043 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQY---------NNNGYTPLHQAAINGH 179 (539)
Q Consensus 109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~tpLh~Aa~~g~ 179 (539)
.|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++.... +..|.||||.|+..|+
T Consensus 82 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 99999999999998887 7789999999999999999999999999999887542 6779999999999999
Q ss_pred HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC----hhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHH
Q 040043 180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK----YNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEY 255 (539)
Q Consensus 180 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~----~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~ 255 (539)
.++++.|++..+..++..|..|+||||.|+..++ .+++++|++. +..++.+|..|+||||+|+..++.+++++
T Consensus 161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 9999999998777889999999999999999999 8899999887 56788999999999999999999999999
Q ss_pred HhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043 256 IIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG 299 (539)
Q Consensus 256 Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~ 299 (539)
|+++.|++++.+|..|+||+++|...++.++++.+++.+++++.
T Consensus 238 Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 99878999999999999999999999999999999999988764
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.4e-41 Score=338.36 Aligned_cols=287 Identities=23% Similarity=0.242 Sum_probs=252.5
Q ss_pred CceecccCcHHHHHHHHHhCChhhhcccc-CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNE-KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN 79 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e 79 (539)
||.||+.|+.++|++||+.|.+ ++.++. .|.||||+||..|+.++|++|++.|+++ +..+..+.+|++.++..+..+
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~~ 106 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIAGSVK 106 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhcccch
Confidence 6889999999999999999988 666654 5999999999999999999999999987 668999999999999999999
Q ss_pred HHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc---------cccCCCCChHHhHHHHcCCHHHHH
Q 040043 80 VVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC---------EQADKNRCLPLHYASRIGNVEITK 150 (539)
Q Consensus 80 iv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~v~ 150 (539)
++..+++.+.+++ ..|..|.||||.|+..|+.++++.|++.+.++. ...+..|.||||+|+..|+.++++
T Consensus 107 ~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~ 185 (337)
T 4g8k_A 107 LLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 185 (337)
T ss_dssp HHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred hhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHH
Confidence 9999999998887 678999999999999999999999999887652 234567999999999999999999
Q ss_pred HHHc-CCCccccccccCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043 151 LLLN-SKPDMALQYNNNGYTPLHQAAINGH----VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225 (539)
Q Consensus 151 ~Ll~-~~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~ 225 (539)
+|++ .|++++.. |..|.||+|.++..+. .++++.|++.+ .+++.+|.+|+||||+|+..++.++++.|++..
T Consensus 186 ~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~- 262 (337)
T 4g8k_A 186 ILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE- 262 (337)
T ss_dssp HHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTST-
T ss_pred HHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc-
Confidence 9995 58888876 9999999998886544 45677777766 458899999999999999999999999998752
Q ss_pred cccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCC
Q 040043 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS 300 (539)
Q Consensus 226 ~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~ 300 (539)
+..++.+|.+|+||||+|+..|+.++|++|+++ |+|+|.+ +||++|+..|+.++++.+|+.+++++..
T Consensus 263 -~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 263 -HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp -TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred -CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 456899999999999999999999999999954 9988754 6999999999999999999999988643
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-40 Score=325.67 Aligned_cols=261 Identities=24% Similarity=0.274 Sum_probs=238.1
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||.|++.|+.++|++|++.+++.....+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.++
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~ 87 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKL 87 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHH
Confidence 688999999999999999998843344889999999999999999999999999887 5688999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccc----------CCCCChHHhHHHHcCCHHHHH
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQA----------DKNRCLPLHYASRIGNVEITK 150 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~ 150 (539)
+++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.+. +.. +..|.||||+|+..|+.++++
T Consensus 88 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 165 (285)
T 1wdy_A 88 LKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165 (285)
T ss_dssp HHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHH
Confidence 999999998877 67889999999999999999999999998876 333 788999999999999999999
Q ss_pred HHHcC-CCccccccccCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043 151 LLLNS-KPDMALQYNNNGYTPLHQAAINGH----VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225 (539)
Q Consensus 151 ~Ll~~-~~~~~~~~d~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~ 225 (539)
+|++. +.+++.. |..|.||||.|+..++ .++++.|++.+. +++..|..|+||||+|+..++.+++++|++..
T Consensus 166 ~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~- 242 (285)
T 1wdy_A 166 ILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQE- 242 (285)
T ss_dssp HHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-
T ss_pred HHHHhcCCCCCcc-CCCCCCHHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc-
Confidence 99987 8888776 9999999999999999 999999998875 47889999999999999999999999999842
Q ss_pred cccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcccccc
Q 040043 226 FTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNY 269 (539)
Q Consensus 226 ~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~ 269 (539)
+..++.+|..|+||||+|+..++.+++++|+++ |++++.+|.
T Consensus 243 -g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 243 -HIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp -SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred -CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 556899999999999999999999999999954 999998873
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.1e-40 Score=329.65 Aligned_cols=269 Identities=20% Similarity=0.198 Sum_probs=239.1
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||.||+.|+.+.|+.++...+..++.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~i 106 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEV 106 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHH
Confidence 588999999999999998766668889999999999999999999999999999887 6688999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH--------------------
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA-------------------- 140 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A-------------------- 140 (539)
+++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.||+|+|
T Consensus 107 v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~ 184 (351)
T 3utm_A 107 TELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184 (351)
T ss_dssp HHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHH
Confidence 999999998887 57889999999999999999999999998887 77788999987765
Q ss_pred -HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhH
Q 040043 141 -SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN---GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA 216 (539)
Q Consensus 141 -~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~ 216 (539)
+..++.+.++.++..+..... .+..|.||||+|+.. +..++++.|++.+.+ ++..|..|+||||+|+.+|+.++
T Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~ 262 (351)
T 3utm_A 185 AAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDV 262 (351)
T ss_dssp HHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHH
Confidence 456677777777776654443 378899999999999 558899999987744 78899999999999999999999
Q ss_pred HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043 217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL 278 (539)
Q Consensus 217 v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a 278 (539)
+++|++. +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|
T Consensus 263 v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 263 MEVLHKH---GAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp HHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHS
T ss_pred HHHHHHC---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhh
Confidence 9999987 567899999999999999999999999999955 999999999999999997
No 7
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.2e-39 Score=324.74 Aligned_cols=269 Identities=18% Similarity=0.197 Sum_probs=243.9
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
.+.+|+||||.||+.|++++|++|++.|+++....+..|.||||+|+..|+.++|++|+++|+++. ..+..+.++++.+
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILA 99 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHHH
Confidence 345688999999999999999999999998854445569999999999999999999999999887 6788999999999
Q ss_pred HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccc---------cccCCCCHHHHHHHc
Q 040043 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQ---------YNNNGYTPLHQAAIN 177 (539)
Q Consensus 107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---------~d~~g~tpLh~Aa~~ 177 (539)
+..+...++..+++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++.. .+..|.||||+|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 9999999999999988887 788999999999999999999999999999887642 255789999999999
Q ss_pred CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCCh----hHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHH
Q 040043 178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKY----NAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA 253 (539)
Q Consensus 178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~----~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv 253 (539)
|+.++++.|++..+.+++..|..|+|++|.++..+.. .++++|++. +..+|.+|..|+||||+|+..++.+++
T Consensus 179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~---gad~n~~d~~g~t~L~~a~~~~~~~~v 255 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLV 255 (337)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT---TCCTTCCCGGGCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhhhhHHH
Confidence 9999999999887788999999999999998876553 467788776 667899999999999999999999999
Q ss_pred HHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCC
Q 040043 254 EYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGS 300 (539)
Q Consensus 254 ~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~ 300 (539)
+.|++..++++|.+|.+|+||||+|++.|+.++++.+++.+++++..
T Consensus 256 ~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~ 302 (337)
T 4g8k_A 256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 302 (337)
T ss_dssp HHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred HHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 99998889999999999999999999999999999999999888643
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-39 Score=316.73 Aligned_cols=253 Identities=19% Similarity=0.183 Sum_probs=202.4
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcc----------cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLF----------VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD 98 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~ 98 (539)
..|.|+||+|++.|+.+.+..++..++. ..+..|..|.||||+|+..|+.+++++|++.+.+++ ..+.+
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~ 91 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITAD 91 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECTT
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCC
Confidence 4789999999999998777776654322 235578899999999999999999999999998877 67889
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043 99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING 178 (539)
Q Consensus 99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 178 (539)
|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++.. +.+|.||||+|+..|
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRG 168 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcC
Confidence 999999999999999999999998877 78899999999999999999999999999998875 556999999999999
Q ss_pred CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 179 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
+.++++.|++.+.+ ++..|..|+||||+|+..++.+++++|++. +..++ .|..|+||||+|+..++.+++++|++
T Consensus 169 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 169 HVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---GADVN-QGKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp CHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999988754 788999999999999999999999999987 44566 48999999999999999999999996
Q ss_pred ccccCccccccCCCCHHHHHHHcCCchhhHHHhhh
Q 040043 259 KTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQS 293 (539)
Q Consensus 259 ~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~ 293 (539)
. |++++.+|.+|+||+++|. ++.+.++.+++.
T Consensus 244 ~-gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 244 F-GADTQAKNAEGKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp T-TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred C-CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence 4 9999999999999999998 446777777776
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=315.99 Aligned_cols=254 Identities=20% Similarity=0.220 Sum_probs=208.0
Q ss_pred CceecccCcHHHHHHHHHhCC----------hhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCP----------QLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFL 70 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~----------~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 70 (539)
||+|+..|+.+.+..++..++ ..+..+|..|+||||+||..|+.+++++|++.+.++ +..|.+|.||||
T Consensus 19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 97 (285)
T 3d9h_A 19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLH 97 (285)
T ss_dssp -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCCCHHH
T ss_pred HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence 799999999888888766532 235678899999999999999999999999999887 678999999999
Q ss_pred HHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHH
Q 040043 71 LACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITK 150 (539)
Q Consensus 71 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~ 150 (539)
+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.++++.|++.+.+. + .+..|.||||+|+..|+.++++
T Consensus 98 ~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~ 174 (285)
T 3d9h_A 98 EACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVN 174 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHH
T ss_pred HHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999999998877 67899999999999999999999999998876 3 3456999999999999999999
Q ss_pred HHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccccccc
Q 040043 151 LLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLL 230 (539)
Q Consensus 151 ~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~ 230 (539)
+|++.|++++.. |..|.||||+|+..|+.++++.|++.+.+ ++ .+..|+||||+|+..++.+++++|++. +.++
T Consensus 175 ~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~ 248 (285)
T 3d9h_A 175 SLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDF---GADT 248 (285)
T ss_dssp HHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHT---TCCT
T ss_pred HHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCC
Confidence 999999999876 99999999999999999999999998755 44 488999999999999999999999997 6678
Q ss_pred ccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccc
Q 040043 231 HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNC 266 (539)
Q Consensus 231 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~ 266 (539)
+.+|.+|+||||+|+ ++.+++++|+++.++++..
T Consensus 249 ~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 249 QAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 999999999999999 5578999999876776653
No 10
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=311.74 Aligned_cols=251 Identities=20% Similarity=0.229 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043 30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 109 (539)
.|+||||+||..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 5899999999999999999999999887 6789999999999999999999999999998877 6789999999999999
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189 (539)
Q Consensus 110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 189 (539)
|+.++++.|++.+++.. .+..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.++++.|++.
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999988873 3566999999999999999999999999999886 99999999999999999999999998
Q ss_pred CCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccc-------c
Q 040043 190 SPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTK-------V 262 (539)
Q Consensus 190 ~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~-------~ 262 (539)
+.+ ++ .+..|+||||+|+..++.+++++|++. +.+++.+|.+|+||||+|+..+ +++++|++..+ +
T Consensus 157 g~~-~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~ 229 (261)
T 2xai_A 157 GAD-VN-QGKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLC 229 (261)
T ss_dssp TCC-TT-CCBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHH
T ss_pred CCC-CC-CCCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHH
Confidence 865 44 388999999999999999999999997 6678999999999999999655 47888886533 4
Q ss_pred CccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043 263 DKNCRNYTNQTALDVLKESGTKEAFSSELQ 292 (539)
Q Consensus 263 ~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~ 292 (539)
+++.+|..|+||+|.+.+...++.++..++
T Consensus 230 ~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 230 RLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp HHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred HHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 667899999999999988777766665543
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-39 Score=331.27 Aligned_cols=261 Identities=17% Similarity=0.214 Sum_probs=226.6
Q ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccc-cCCChHHHHHHHcCCHHHHHHHH--------hCCccccccc
Q 040043 25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLN-QERQSAFLLACRRGHVNVVKLML--------NQSWLMEFEE 95 (539)
Q Consensus 25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~eiv~~Ll--------~~~~~~~~~~ 95 (539)
...|..|.||||+|+..|+ ++++.|+..+ + +..| ..|.||||+|+..|+.+++++|+ +.+.+++ ..
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--~-n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~ 162 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITRES--V-NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM 162 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCSTTT--T-TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhcccc--c-cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence 3567899999999999665 7888887643 3 3455 78999999999999998888776 7888877 67
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC---CccccccccCCCCHHH
Q 040043 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK---PDMALQYNNNGYTPLH 172 (539)
Q Consensus 96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh 172 (539)
|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.+ .+++.. |..|.||||
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-d~~g~t~L~ 240 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALM 240 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC-CTTSCCHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc-CCCCCCHHH
Confidence 899999999999999999999999999887 788999999999999999999999999988 566665 999999999
Q ss_pred HHHHcC---CHHHHHHHHHhCCCccc--------cccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHH
Q 040043 173 QAAING---HVKILEAFIASSPTSFN--------CLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVL 241 (539)
Q Consensus 173 ~Aa~~g---~~~~v~~Ll~~~~~~~~--------~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~L 241 (539)
+|+..+ +.++++.|++.+.+ ++ ..|..|+||||+|+..|+.+++++|++.. +..++.+|..|+|||
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK--GSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS--CCCTTCCCTTCCCHH
T ss_pred HHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc--CCCccCcCCCCCCHH
Confidence 999998 89999999998765 33 35779999999999999999999999873 256899999999999
Q ss_pred HHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccC
Q 040043 242 HLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEE 296 (539)
Q Consensus 242 h~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~ 296 (539)
|+|+..|+.+++++|++. |++++.+|..|+|||++|+..|+.++++.+++.+.+
T Consensus 318 ~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 318 MLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999999965 999999999999999999999999999999886543
No 12
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.3e-38 Score=306.97 Aligned_cols=228 Identities=20% Similarity=0.212 Sum_probs=109.6
Q ss_pred hhccccCCCCHHHHHHHcC-------------CHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcc
Q 040043 24 VAAVNEKLETPLHEACRQG-------------NAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWL 90 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~ 90 (539)
++.+|.+|.||||+|+..| +.++++.|++.++++....|..|.||||+|+..|+.+++++|++++.+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5778999999999999987 566666666666665555566666666666666666666666666655
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCH
Q 040043 91 MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTP 170 (539)
Q Consensus 91 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 170 (539)
++ ..+..|.||||+|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.|++++.. |..|.||
T Consensus 83 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~ 160 (253)
T 1yyh_A 83 AN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSA 160 (253)
T ss_dssp TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCB-CTTSCBH
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCc-CCCCCCH
Confidence 54 345556666666666666666666666555444555556666666666666666666666666655544 5555666
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCH
Q 040043 171 LHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNY 250 (539)
Q Consensus 171 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~ 250 (539)
||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +..++.+|..|+||||+|+..|+.
T Consensus 161 L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCH
Confidence 6666666666666555555432 444555555555555555555555555544 333444555555555555555555
Q ss_pred HHHHHHh
Q 040043 251 QLAEYII 257 (539)
Q Consensus 251 ~iv~~Ll 257 (539)
+++++|.
T Consensus 237 ~i~~~l~ 243 (253)
T 1yyh_A 237 DIVRLLD 243 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.5e-39 Score=328.07 Aligned_cols=261 Identities=18% Similarity=0.202 Sum_probs=231.7
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL 103 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L 103 (539)
.+..|..|.||||+||..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++++.... +.+|.|||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L 88 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPI 88 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHH
Confidence 4567889999999999999999999999999887 6789999999999999999999999999998543 45899999
Q ss_pred HHHHHcCCHHHHHHHHhc----CCccccc-----------------cCCCCChHHhHHHHcC--CHHHHHHHHcCCCccc
Q 040043 104 HVAISRGKIDIVKEILKV----RPSFCEQ-----------------ADKNRCLPLHYASRIG--NVEITKLLLNSKPDMA 160 (539)
Q Consensus 104 h~A~~~g~~~~v~~LL~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~ 160 (539)
|+|+..|+.++++.|++. +.+. +. .|..|.||||+|+..| +.+++++|+++|++++
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 999999999999999998 5544 33 7788999999999999 9999999999999998
Q ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCC
Q 040043 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTS----FNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQF 236 (539)
Q Consensus 161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~ 236 (539)
.. |..|.||||+|+..|+.++++.|++.+++. ++..|..|+||||+|+..|+.+++++|++. +.+++.+|..
T Consensus 168 ~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~d~~ 243 (364)
T 3ljn_A 168 AK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM---GIDVNMEDNE 243 (364)
T ss_dssp CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCCCTT
T ss_pred cc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCC
Confidence 86 999999999999999999999999987653 788899999999999999999999999987 6678999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhccccCcc------------ccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043 237 GNTVLHLAILRNNYQLAEYIIKKTKVDKN------------CRNYTNQTALDVLKESGTKEAFSSELQSV 294 (539)
Q Consensus 237 G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~------------~~n~~g~t~l~~a~~~~~~~~~~~~l~~~ 294 (539)
|+||||+|+..++.+++++|+++ +.+++ ..+..|.||++.|...+..+.+..+++..
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence 99999999999999999999965 55543 25678889999888888777777777653
No 14
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.1e-37 Score=311.08 Aligned_cols=276 Identities=22% Similarity=0.204 Sum_probs=242.6
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL 103 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L 103 (539)
....+..|.|+||.||+.|+.+.++.|+.......+..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.|||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L 95 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHH
Confidence 456778899999999999999999999987555557789999999999999999999999999998887 6788999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH---------
Q 040043 104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA--------- 174 (539)
Q Consensus 104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--------- 174 (539)
|+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|+++... +..|.+|++.|
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHH
Confidence 9999999999999999998887 778999999999999999999999999999999876 89999998775
Q ss_pred ------------HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh---CChhHHHHHHhhcccccccccccCCCCc
Q 040043 175 ------------AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRF---GKYNAFIFLAESFDFTGLLHQQDQFGNT 239 (539)
Q Consensus 175 ------------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~---~~~~~v~~Ll~~~~~~~~~~~~d~~G~T 239 (539)
+..+..+.+..++..... ....+..|.||||+|+.. +..+++++|++. +..++.+|..|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t 249 (351)
T 3utm_A 174 TYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRK---GANVNEKNKDFMT 249 (351)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT---TCCTTCCCTTCCC
T ss_pred HhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc---CCCcCCcCCCCCC
Confidence 455666666666655433 344677899999999999 557889999887 5678999999999
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCCCchhhhHH
Q 040043 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNGSPKHLQQY 307 (539)
Q Consensus 240 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 307 (539)
|||+|+..++.+++++|++ .|+++|.+|..|+||||+|+..|+.++++.+++.+.+++.........
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta 316 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 9999999999999999995 599999999999999999999999999999999999887655544433
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=305.04 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=223.2
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||.||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+.++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~ 84 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDC 84 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHH
Confidence 6899999999999999999877 7899999999999999999999999999999887 6789999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 160 (539)
+++|++++.+.. .+.+|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.|++++
T Consensus 85 v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 85 VNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp HHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred HHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 999999998876 4667999999999999999999999999887 7889999999999999999999999999999988
Q ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccc-----cccccccC
Q 040043 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT-----GLLHQQDQ 235 (539)
Q Consensus 161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~-----~~~~~~d~ 235 (539)
. +..|.||||+|+..|+.++++.|++.+. +++.+|.+|+||||+|+.+ .+++++|++..... ..++.+|.
T Consensus 162 ~--~~~g~t~Lh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~ 236 (261)
T 2xai_A 162 Q--GKGQDSPLHAVARTASEELACLLMDFGA-DTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKC 236 (261)
T ss_dssp C--CBTTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTT
T ss_pred C--CCCCCChHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHH
Confidence 4 8899999999999999999999999865 4899999999999999954 45888888864322 24667899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHh
Q 040043 236 FGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 236 ~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
.|+||+|.|++...++.++.++
T Consensus 237 ~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 237 FGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp SCTTCGGGGGGSSSCHHHHHHH
T ss_pred hchhccccCcccCCcHHHHHHH
Confidence 9999999999988777666554
No 16
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-38 Score=323.84 Aligned_cols=250 Identities=18% Similarity=0.212 Sum_probs=221.6
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccc-cCCCCHHHHHHHcCCHHHHHHHH--------hcCcccccccccCCChHHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVN-EKLETPLHEACRQGNAEISALLL--------KTNLFVATLLNQERQSAFLL 71 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n-~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~ 71 (539)
||.||..|+ ++++.|+.. .++.+| ..|.||||+||..|+.+++++|+ +.|.++ +..|..|.||||+
T Consensus 98 L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~ 172 (373)
T 2fo1_E 98 LHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLML 172 (373)
T ss_dssp HHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHH
T ss_pred HHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHH
Confidence 467777443 666666542 256677 79999999999999998888776 778777 6789999999999
Q ss_pred HHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--ccccccCCCCChHHhHHHHcC---CH
Q 040043 72 ACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRP--SFCEQADKNRCLPLHYASRIG---NV 146 (539)
Q Consensus 72 A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g---~~ 146 (539)
|+..|+.+++++|++++++++ ..+..|.||||+|+..|+.+++++|++.+. ...+..|..|.||||+|+..+ +.
T Consensus 173 A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~ 251 (373)
T 2fo1_E 173 AVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred HHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchH
Confidence 999999999999999999887 678899999999999999999999999763 233778999999999999998 89
Q ss_pred HHHHHHHcCCCcccc-------ccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043 147 EITKLLLNSKPDMAL-------QYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219 (539)
Q Consensus 147 ~~v~~Ll~~~~~~~~-------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~ 219 (539)
+++++|++.|++++. ..|..|.||||+|+..|+.++++.|++.++.+++..|..|+||||+|+..|+.+++++
T Consensus 252 ~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~ 331 (373)
T 2fo1_E 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 331 (373)
T ss_dssp HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999998875 2367899999999999999999999999888899999999999999999999999999
Q ss_pred HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
|++. +..++.+|..|+||||+|+..++.+++++|++.
T Consensus 332 Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 332 LIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9997 667899999999999999999999999999954
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.1e-37 Score=297.40 Aligned_cols=231 Identities=19% Similarity=0.247 Sum_probs=179.4
Q ss_pred cccccCCChHHHHHHHcC-------------CHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc
Q 040043 59 TLLNQERQSAFLLACRRG-------------HVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSF 125 (539)
Q Consensus 59 ~~~~~~g~tpL~~A~~~g-------------~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~ 125 (539)
+.+|.+|.||||+|+..| +.+++++|++++.+.....+..|.||||+|+..|+.++++.|++.+.++
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 83 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 83 (253)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 567899999999999987 8999999999999887677899999999999999999999999998887
Q ss_pred ccccCCCCChHHhHHHHcCCHHHHHHHHcCCC-ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 040043 126 CEQADKNRCLPLHYASRIGNVEITKLLLNSKP-DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV 204 (539)
Q Consensus 126 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 204 (539)
+..|..|+||||+|+..|+.+++++|++.++ +++. .+..|.||||+|+..|+.++++.|++.+. +++..|..|+||
T Consensus 84 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t~ 160 (253)
T 1yyh_A 84 -NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHA-DVNAVDDLGKSA 160 (253)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHHHHHTCSSHHHHHHHTTC-CTTCBCTTSCBH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHHHHcChHHHHHHHHHcCC-CCCCcCCCCCCH
Confidence 7889999999999999999999999999998 5554 49999999999999999999999999765 478899999999
Q ss_pred HHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCc
Q 040043 205 FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTK 284 (539)
Q Consensus 205 Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~ 284 (539)
||+|+..|+.+++++|++. +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|.+.|+.
T Consensus 161 L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 161 LHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcCCH
Confidence 9999999999999999987 567889999999999999999999999999954 999999999999999999999999
Q ss_pred hhhHHHhhhccC
Q 040043 285 EAFSSELQSVEE 296 (539)
Q Consensus 285 ~~~~~~l~~~~~ 296 (539)
+++..+.+....
T Consensus 237 ~i~~~l~~~~~~ 248 (253)
T 1yyh_A 237 DIVRLLDLEHHH 248 (253)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHhhh
Confidence 999888765443
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.2e-37 Score=290.64 Aligned_cols=227 Identities=23% Similarity=0.393 Sum_probs=165.5
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL 103 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L 103 (539)
++.+|..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.|||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L 81 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCL 81 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHH
Confidence 4567788888888888888888888888888776 5567788888888888888888888888887765 4667788888
Q ss_pred HHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHH
Q 040043 104 HVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKIL 183 (539)
Q Consensus 104 h~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v 183 (539)
|.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||.|+..|+.+++
T Consensus 82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHH
Confidence 88888888888888888775555677777888888888888888888888877777665 77777777777777777777
Q ss_pred HHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043 184 EAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 184 ~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
+.|++.+.+ ++..|..|+||||+|+..++.+++++|++. +..++.+|.+|+||||+|+..++.+.+..|+
T Consensus 161 ~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 777766533 555566666666666666666666666654 3445556666666666666666554444333
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.3e-37 Score=293.49 Aligned_cols=229 Identities=21% Similarity=0.208 Sum_probs=183.3
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHh----cCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLK----TNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDE 99 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g 99 (539)
++.+|.+|+||||+||..|+.+++++|++ .+.++ +..|..|.||||+|+..|+.+++++|++++.++. ..+..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g 79 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHG 79 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCC
Confidence 46789999999999999999999999997 45555 6678899999999999999999999999998876 568889
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCc---cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHH
Q 040043 100 STPLHVAISRGKIDIVKEILKVRPS---FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI 176 (539)
Q Consensus 100 ~t~Lh~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~ 176 (539)
.||||+|+..|+.++++.|++.++. ..+..|..|.||||+|+..|+.+++++|++.|++++...+..|.||||+|+.
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 9999999999999999999998762 3366788899999999999999999999999888887633778888888888
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043 177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256 (539)
Q Consensus 177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L 256 (539)
.|+.++++.|++.+. +++..|..|+||||+|+..++.+++++|++. +..++.+|..|+||||+|+..++.++++.|
T Consensus 160 ~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp TTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred cCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 888888888887754 3677777777777777777777777777775 455677777777777777777777777776
Q ss_pred hh
Q 040043 257 IK 258 (539)
Q Consensus 257 l~ 258 (539)
++
T Consensus 236 ~~ 237 (241)
T 1k1a_A 236 AT 237 (241)
T ss_dssp --
T ss_pred cc
Confidence 64
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-37 Score=300.89 Aligned_cols=252 Identities=20% Similarity=0.150 Sum_probs=191.8
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcc--cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCc
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLF--VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDEST 101 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t 101 (539)
++.+|..|+||||+||+.|+.+++++|++.+++ ..+..+..|.||||+|+..|+.+++++|++++++++ ..+..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCC
Confidence 467899999999999999999999999998776 246788999999999999999999999999999887 67889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCccc------------cccCCCCChHHhHHHHcCCHH-HHHHHHcCCCccccccccCCC
Q 040043 102 PLHVAISRGKIDIVKEILKVRPSFC------------EQADKNRCLPLHYASRIGNVE-ITKLLLNSKPDMALQYNNNGY 168 (539)
Q Consensus 102 ~Lh~A~~~g~~~~v~~LL~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~-~v~~Ll~~~~~~~~~~d~~g~ 168 (539)
|||+|+..|+.++++.|++.++... ......+.++++.++..+... ....+...+.+++.. +..|.
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 159 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGH 159 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC-CTTSC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCc
Confidence 9999999999999999999876531 122345667777777665443 444555556666665 89999
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 040043 169 TPLHQAAINGHVKILEAFIASSPTSFNCLTT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR 247 (539)
Q Consensus 169 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~ 247 (539)
||||+|+..|+.++++.|++.+.+ ++..+. .|+||||+|+..|+.+++++|++. +..++.+|..|+||||+|+..
T Consensus 160 t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~ 235 (282)
T 1oy3_D 160 TPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLR 235 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHc
Confidence 999999999999999999998865 566664 599999999999999999999998 667899999999999999999
Q ss_pred CCHHHHHHHhhccccCccccccCCCCHHHHHHHcC
Q 040043 248 NNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESG 282 (539)
Q Consensus 248 ~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~ 282 (539)
++.+++++|++ .|++++.+|..|.||+++|....
T Consensus 236 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 236 PNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp SCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred CCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 99999999995 59999999999999999997654
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.7e-38 Score=317.76 Aligned_cols=252 Identities=19% Similarity=0.177 Sum_probs=225.1
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||+||..|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+++. .+.+|.||||+|+..|+.++
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g~~~~ 99 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDL 99 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcCCHHH
Confidence 6899999999999999999887 7899999999999999999999999999999854 34689999999999999999
Q ss_pred HHHHHhC----Cccccc----------------ccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCccccccCCCCChHHh
Q 040043 81 VKLMLNQ----SWLMEF----------------EEDRDESTPLHVAISRG--KIDIVKEILKVRPSFCEQADKNRCLPLH 138 (539)
Q Consensus 81 v~~Ll~~----~~~~~~----------------~~~~~g~t~Lh~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh 138 (539)
+++|+++ +..++. ..+..|.||||+|+..| +.+++++|++.+.++ +..|..|.||||
T Consensus 100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~ 178 (364)
T 3ljn_A 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLM 178 (364)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 9999998 555441 16778999999999999 999999999998887 788999999999
Q ss_pred HHHHcCCHHHHHHHHcCCCc-----cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC
Q 040043 139 YASRIGNVEITKLLLNSKPD-----MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213 (539)
Q Consensus 139 ~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~ 213 (539)
+|+..|+.+++++|+++|++ ++.. |..|.||||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYA-NKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCC-CTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhccccccccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhCh
Confidence 99999999999999999988 7665 89999999999999999999999998754 78999999999999999999
Q ss_pred hhHHHHHHhhcccc---------cccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 214 YNAFIFLAESFDFT---------GLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 214 ~~~v~~Ll~~~~~~---------~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
.+++++|++..... ......+..|+||+++|+..++.+.+..|+..
T Consensus 257 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~ 311 (364)
T 3ljn_A 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311 (364)
T ss_dssp HHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence 99999999974321 12233678899999999999988888888754
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.3e-36 Score=286.78 Aligned_cols=224 Identities=24% Similarity=0.322 Sum_probs=185.1
Q ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHH
Q 040043 28 NEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAI 107 (539)
Q Consensus 28 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~ 107 (539)
+..++||||.|++.|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHHH
Confidence 45688999999999999999999998887777788899999999999999999999999887776 56778889999999
Q ss_pred HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043 108 SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187 (539)
Q Consensus 108 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 187 (539)
..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|.+++.. +..|.||||.|+..|+.++++.|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999998888776 677888888888888888888888888888887765 788888888888888888888888
Q ss_pred HhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 188 ASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 188 ~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
+.+. +++..|..|+||||+|+..++.+++++|++. +..++.+|..|.||||+|+..++.+++++|.+
T Consensus 160 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~ 226 (231)
T 3aji_A 160 FYKA-STNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEG 226 (231)
T ss_dssp HTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred hcCC-CccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence 7654 3677777788888888888888888877776 45567777778888888877777777777763
No 23
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.6e-36 Score=284.71 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=138.5
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCC--cccccccCCCCCcHHHHHHH
Q 040043 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQS--WLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~ 108 (539)
|+||||.|++.|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|++++ .+.....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6788888888888888888888888776667888888888888888888888888877 33332256667777777777
Q ss_pred cCCHHHHHHHHhcC--CccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043 109 RGKIDIVKEILKVR--PSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186 (539)
Q Consensus 109 ~g~~~~v~~LL~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L 186 (539)
.|+.++++.|++.+ ++. +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHH
Confidence 77777777777765 333 555666777777777777777777777776666654 66666666666666666666666
Q ss_pred HHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH-hhcccccccccccCCCCcHHHHHH
Q 040043 187 IASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA-ESFDFTGLLHQQDQFGNTVLHLAI 245 (539)
Q Consensus 187 l~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll-~~~~~~~~~~~~d~~G~T~Lh~A~ 245 (539)
++.++.+++..|..|+||||+|+..++.+++++|+ +. +.+++.+|.+|.||||+|+
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCS
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHH
Confidence 66554444555555555555555555555555554 32 2334444445555555443
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-35 Score=282.24 Aligned_cols=225 Identities=21% Similarity=0.318 Sum_probs=205.3
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043 59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH 138 (539)
Q Consensus 59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh 138 (539)
+..|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 82 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLH 82 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHH
Confidence 4578899999999999999999999999998877 57889999999999999999999999998876 778999999999
Q ss_pred HHHHcCCHHHHHHHHcCC-CccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHH
Q 040043 139 YASRIGNVEITKLLLNSK-PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAF 217 (539)
Q Consensus 139 ~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v 217 (539)
+|+..|+.+++++|++.+ .+++.. +..|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHH
Confidence 999999999999999999 555554 89999999999999999999999998754 788899999999999999999999
Q ss_pred HHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHh
Q 040043 218 IFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSEL 291 (539)
Q Consensus 218 ~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l 291 (539)
++|++. +..++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|+||+++|...++...+..++
T Consensus 161 ~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 161 EILLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999987 567889999999999999999999999999954 9999999999999999999988765544443
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.4e-36 Score=286.43 Aligned_cols=227 Identities=18% Similarity=0.247 Sum_probs=201.4
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHh----CCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCC
Q 040043 59 TLLNQERQSAFLLACRRGHVNVVKLMLN----QSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRC 134 (539)
Q Consensus 59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~ 134 (539)
+.+|.+|.||||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 4678999999999999999999999997 566665 67889999999999999999999999998887 77899999
Q ss_pred hHHhHHHHcCCHHHHHHHHcCCC----ccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 040043 135 LPLHYASRIGNVEITKLLLNSKP----DMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT-TDGDTVFHLAL 209 (539)
Q Consensus 135 tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Av 209 (539)
||||+|+..|+.+++++|++.++ ++... |..|.||||.|+..|+.++++.|++.+.+ ++..+ ..|.||||+|+
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCcccccccc-CcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHH
Confidence 99999999999999999999987 55554 88999999999999999999999998765 56666 78999999999
Q ss_pred HhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHH
Q 040043 210 RFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS 289 (539)
Q Consensus 210 ~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~ 289 (539)
..++.+++++|++. +..++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||+++|...|..++++.
T Consensus 159 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 159 ENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRG 234 (241)
T ss_dssp HTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred HcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence 99999999999997 56789999999999999999999999999995 599999999999999999999988888777
Q ss_pred Hhhh
Q 040043 290 ELQS 293 (539)
Q Consensus 290 ~l~~ 293 (539)
+++.
T Consensus 235 l~~~ 238 (241)
T 1k1a_A 235 KATR 238 (241)
T ss_dssp ----
T ss_pred hccC
Confidence 6654
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-35 Score=281.10 Aligned_cols=213 Identities=22% Similarity=0.251 Sum_probs=195.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcC--CccccccCCCCChHHhHHHH
Q 040043 65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVR--PSFCEQADKNRCLPLHYASR 142 (539)
Q Consensus 65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~--~~~~~~~d~~g~tpLh~A~~ 142 (539)
|.||||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+ ++.....|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999998877668999999999999999999999999998 55544478999999999999
Q ss_pred cCCHHHHHHHHcCC--CccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043 143 IGNVEITKLLLNSK--PDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220 (539)
Q Consensus 143 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L 220 (539)
.|+.+++++|++.| ++++.. +..|.||||.|+..|+.++++.|++.+ .+++..|..|+||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 777765 889999999999999999999999886 45788999999999999999999999999
Q ss_pred HhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHc
Q 040043 221 AESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES 281 (539)
Q Consensus 221 l~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~ 281 (539)
++... ..++.+|..|+||||+|+..++.+++++|+++.|++++.+|..|+||+++|.+.
T Consensus 160 l~~g~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 160 CGLGK--SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HTTTC--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HhcCc--ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 98731 568899999999999999999999999999777999999999999999999654
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.6e-35 Score=279.49 Aligned_cols=226 Identities=24% Similarity=0.224 Sum_probs=207.1
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
+..+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence 3457899999999999999999999887665578899999999999999999999999998876 778999999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll 221 (539)
..|+.+++++|+++|++++.. |..|.||||.|+..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876 99999999999999999999999988754 7888999999999999999999999999
Q ss_pred hhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhc
Q 040043 222 ESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSV 294 (539)
Q Consensus 222 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~ 294 (539)
+. +..++.+|..|+||||+|+..++.+++++|++. |++++.+|..|+||+++|...++.++.+.+++.+
T Consensus 160 ~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 160 FY---KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp HT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred hc---CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 87 567889999999999999999999999999955 9999999999999999999888777777766544
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9e-35 Score=276.72 Aligned_cols=228 Identities=21% Similarity=0.290 Sum_probs=172.0
Q ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHH
Q 040043 25 AAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLH 104 (539)
Q Consensus 25 ~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh 104 (539)
...|..|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++++.......+..|.||||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 345777888888888888888888888888776 5567788888888888888888888888887776555666788888
Q ss_pred HHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC-HHHH
Q 040043 105 VAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH-VKIL 183 (539)
Q Consensus 105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~-~~~v 183 (539)
.|+..|+.++++.|++.+.+. +..|..|.||||+|+..|+.+++++|++.|+++... +..|.||||.|+..++ .+++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHHH
Confidence 888888888888888877666 566777888888888888888888888887777665 7777888888876555 6666
Q ss_pred HHHHHhCCCccccccC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 184 EAFIASSPTSFNCLTT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 184 ~~Ll~~~~~~~~~~d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
+.|++.+.+ ++..+. .|.||||+|+..++.+++++|++. +..++.+|..|+||||+|+..++.+++++|++.
T Consensus 160 ~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 160 RLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 666665544 455554 777777777777777777777776 445667777777777777777777777777743
No 29
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-35 Score=288.78 Aligned_cols=244 Identities=17% Similarity=0.091 Sum_probs=183.5
Q ss_pred CceecccCcHHHHHHHHHhCCh--hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQ--LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHV 78 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~--~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 78 (539)
||+|++.|+.++|++|++.+.. .++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~ 91 (282)
T 1oy3_D 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAH 91 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTTTTCH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCc
Confidence 6999999999999999997654 47889999999999999999999999999999987 67899999999999999999
Q ss_pred HHHHHHHhCCccccc------------ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCH
Q 040043 79 NVVKLMLNQSWLMEF------------EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNV 146 (539)
Q Consensus 79 eiv~~Ll~~~~~~~~------------~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~ 146 (539)
+++++|++++..... .....+.++++.+...+.......++.......+..|..|.||||+|+..|+.
T Consensus 92 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 171 (282)
T 1oy3_D 92 TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171 (282)
T ss_dssp HHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH
T ss_pred chhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH
Confidence 999999998865331 12234556777777666554444444433344577899999999999999999
Q ss_pred HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhccc
Q 040043 147 EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDF 226 (539)
Q Consensus 147 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~ 226 (539)
+++++|+++|++++...+..|.||||+|+..|+.++++.|++.+. +++.+|..|+||||+|+.+++.+++++|++.
T Consensus 172 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--- 247 (282)
T 1oy3_D 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNPILARLLRAH--- 247 (282)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHHcCCcHHHHHHHHc---
Confidence 999999999999998734569999999999999999999999864 5899999999999999999999999999988
Q ss_pred ccccccccCCCCcHHHHHHHcCC
Q 040043 227 TGLLHQQDQFGNTVLHLAILRNN 249 (539)
Q Consensus 227 ~~~~~~~d~~G~T~Lh~A~~~~~ 249 (539)
+..++.+|..|.|||++|....+
T Consensus 248 ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 248 GAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TCCCCCCC---------------
T ss_pred CCCcCcCCCcccccccccCCccc
Confidence 66789999999999999987654
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-35 Score=290.06 Aligned_cols=262 Identities=21% Similarity=0.214 Sum_probs=219.3
Q ss_pred eecccCcHHHHHHHHHhCChh--------hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHH
Q 040043 3 AATGFGHIELVTEIIKLCPQL--------VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACR 74 (539)
Q Consensus 3 ~Aa~~g~~e~v~~Ll~~~~~~--------l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 74 (539)
.+++.|+.+.++.++...... ....+..|.||||.||..|+.+++++|++.|+++ +..|..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence 467778888888888875431 1223456789999999999999999999999887 6688999999999999
Q ss_pred cCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHc
Q 040043 75 RGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154 (539)
Q Consensus 75 ~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 154 (539)
.|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.++++.++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 999999999999998877 57889999999999999999999999998887 7789999999999999999999988775
Q ss_pred C-CCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccc
Q 040043 155 S-KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQ 233 (539)
Q Consensus 155 ~-~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~ 233 (539)
. +.+.... +..+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|++. +..++.+
T Consensus 161 ~~~~~~~~~-~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~~ 228 (299)
T 1s70_B 161 RQGVDIEAA-RKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIK 228 (299)
T ss_dssp HHTCCHHHH-HHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCC
T ss_pred hcCCCchhh-hhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCCc
Confidence 4 4444332 222333333 3345566676666667788999999999999999999999987 5678999
Q ss_pred cCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHH
Q 040043 234 DQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKE 280 (539)
Q Consensus 234 d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~ 280 (539)
|..|+||||+|+..|+.+++++|++. |++++.+|..|+||+++|.+
T Consensus 229 d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 229 DYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999955 99999999999999999954
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=287.63 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=135.5
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
+|.++.+||+.||+.|+.++|++|++.+........ ......+..|.||||.|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~~~~t~L~~a 59 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADPEFCHPLCQC 59 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCccCCCHHHHH
Confidence 455556677777777777777777766654311000 00012445566777777
Q ss_pred HHcCCH-HHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHH
Q 040043 107 ISRGKI-DIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEA 185 (539)
Q Consensus 107 ~~~g~~-~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~ 185 (539)
+..++. .+++.|++.+.++ +..|.+|+||||+|+..|+.+++++|++.++++... +.+|.||+|.|+..++.++++.
T Consensus 60 ~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~ 137 (269)
T 4b93_B 60 PKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKC 137 (269)
T ss_dssp ---------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHH
Confidence 666554 3566666666665 666777777777777777777777777777777665 7777777777777777777777
Q ss_pred HHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCcc
Q 040043 186 FIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKN 265 (539)
Q Consensus 186 Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~ 265 (539)
|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +.++|.+|..|+||||+|+..|+.+++++|++ .|+|++
T Consensus 138 Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~ 212 (269)
T 4b93_B 138 LLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQ 212 (269)
T ss_dssp HHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSC
T ss_pred HHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCC
Confidence 7766543 667777777777777777777777777775 45677778888888888888888888888884 478888
Q ss_pred ccccCCCCHHHHHHHcCC
Q 040043 266 CRNYTNQTALDVLKESGT 283 (539)
Q Consensus 266 ~~n~~g~t~l~~a~~~~~ 283 (539)
.+|..|+||||+|++++.
T Consensus 213 ~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 213 VLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CCCTTSCCSGGGSCTTCH
T ss_pred CcCCCCCCHHHHHHhCCc
Confidence 888888888888766553
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.3e-35 Score=285.91 Aligned_cols=242 Identities=17% Similarity=0.113 Sum_probs=170.2
Q ss_pred cccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHH
Q 040043 5 TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLM 84 (539)
Q Consensus 5 a~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~L 84 (539)
++..+.+.|..++..+ + ++.+|..|.||||+|+..|+.+++++|++.|+++.. . +|.||||+|+..|+.+++++|
T Consensus 7 i~~~~~~~v~~lL~~~-~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGGCCHHHHHHHHHST-T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HHhcCHHHHHHHHHhC-C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHH
Confidence 3444555555555443 2 577888888888888888888888888888877633 2 478888888888888888888
Q ss_pred HhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCC-ChHHhHHHHcCCHHHHHHHHcCCCcccccc
Q 040043 85 LNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNR-CLPLHYASRIGNVEITKLLLNSKPDMALQY 163 (539)
Q Consensus 85 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 163 (539)
++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..| .||||+|+..|+.+++++|+++|++...
T Consensus 82 l~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-- 157 (285)
T 3kea_A 82 LFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-- 157 (285)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--
T ss_pred HHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--
Confidence 88887766 46777888888888888888888888877766 6667777 6888888888888888888877776532
Q ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH-HHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHH
Q 040043 164 NNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTV-FHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLH 242 (539)
Q Consensus 164 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh 242 (539)
...|.||||+|+..|+.++++.|++.+. +++..|..|+|| ||+|+..++.+++++|++. +..++.+| +
T Consensus 158 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~ 226 (285)
T 3kea_A 158 LAILLSCIHITIKNGHVDMMILLLDYMT-STNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------L 226 (285)
T ss_dssp CSTHHHHHHHHHHTTCHHHHHHHHHHHH-HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------G
T ss_pred ccCCccHHHHHHHcChHHHHHHHHHcCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------h
Confidence 1267777777777777777777777653 356666677776 7777777777777777665 44455555 2
Q ss_pred HHHHcCCHHHHHHHhhccccCcccc
Q 040043 243 LAILRNNYQLAEYIIKKTKVDKNCR 267 (539)
Q Consensus 243 ~A~~~~~~~iv~~Ll~~~~~~~~~~ 267 (539)
.|+..++.+++++|+++ |++++..
T Consensus 227 ~a~~~~~~~iv~~Ll~~-g~~~~~~ 250 (285)
T 3kea_A 227 ENVLLDDAEIAKMIIEK-HVEYKSD 250 (285)
T ss_dssp GGGTTTCHHHHHHHHHH-HHHHTTC
T ss_pred hhhhcCCHHHHHHHHHc-CCCCCCc
Confidence 44556677777777743 5555443
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.3e-34 Score=269.69 Aligned_cols=231 Identities=20% Similarity=0.271 Sum_probs=210.4
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhH
Q 040043 60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY 139 (539)
Q Consensus 60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~ 139 (539)
..|..|.|||+.|+..|+.+++++|++.+.+++ ..+..|.||||.|+..|+.+++++|++.+++.....+..|.||||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 457789999999999999999999999998876 5788999999999999999999999999998877777779999999
Q ss_pred HHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC-hhHHH
Q 040043 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK-YNAFI 218 (539)
Q Consensus 140 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~-~~~v~ 218 (539)
|+..|+.+++++|++.|+++... +..|.||||.|+..|+.++++.|++.+. .++..+..|.||||+|+..++ .++++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCC-CccccCCCCCcHHHHHHHhCChHHHHH
Confidence 99999999999999999999876 8999999999999999999999999875 478899999999999997776 88999
Q ss_pred HHHhhcccccccccccC-CCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043 219 FLAESFDFTGLLHQQDQ-FGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP 297 (539)
Q Consensus 219 ~Ll~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~ 297 (539)
+|++. +..++..+. .|+||||+|+..++.+++++|++. |++++.+|..|+||+++|.+.++.++++.+++.+.+.
T Consensus 161 ~L~~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 161 LLLTF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHT---TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHhc---CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99887 556777886 999999999999999999999965 9999999999999999999999999999999876554
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=285.76 Aligned_cols=209 Identities=19% Similarity=0.203 Sum_probs=151.5
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043 61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140 (539)
Q Consensus 61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A 140 (539)
+|..+.+||+.||..|+.++|++|++.+...... .....+..|..|.||||.|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~---------------------------~~~~~~~~~~~~~t~L~~a 59 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED---------------------------AEDTVSAADPEFCHPLCQC 59 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCccccc---------------------------ccccccccCccCCCHHHHH
Confidence 4566667777777777777777777766543200 0111245678899999999
Q ss_pred HHcCCH-HHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043 141 SRIGNV-EITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219 (539)
Q Consensus 141 ~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~ 219 (539)
+..++. .+++.|++.|++++.. |.+|+||||+|+..|+.++++.|++.+.+ ++..+.+|.||+|.|+..++.+++++
T Consensus 60 ~~~~~~~~~v~~Ll~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~ 137 (269)
T 4b93_B 60 PKCAPAQKRLAKVPASGLGVNVT-SQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKC 137 (269)
T ss_dssp ---------------CCCCTTCC-CTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHH
Confidence 988876 4889999999999886 99999999999999999999999988754 78889999999999999999999999
Q ss_pred HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCCC
Q 040043 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPNG 299 (539)
Q Consensus 220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~~ 299 (539)
|++. +..++.+|..|+||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.++++.+++.+++++.
T Consensus 138 Ll~~---g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~ 213 (269)
T 4b93_B 138 LLDS---NAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213 (269)
T ss_dssp HHHT---TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHHC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 9987 56789999999999999999999999999995 5999999999999999999999999999999999888765
Q ss_pred Cch
Q 040043 300 SPK 302 (539)
Q Consensus 300 ~~~ 302 (539)
...
T Consensus 214 ~d~ 216 (269)
T 4b93_B 214 LNK 216 (269)
T ss_dssp CCT
T ss_pred cCC
Confidence 443
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.2e-34 Score=270.43 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=112.7
Q ss_pred CCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040043 42 GNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV 121 (539)
Q Consensus 42 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~ 121 (539)
|+.+++++|++.++++....|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 344445555555554444444455555555555555555555555544443 3444555555555555555555555555
Q ss_pred CCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 040043 122 RPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDG 201 (539)
Q Consensus 122 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 201 (539)
++...+..+..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g 158 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNRE 158 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCC
Confidence 54333455555555555555555555555555555555544 5555555555555555555555555532 344555555
Q ss_pred CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
.||||+|+..++.+++++|++. +..++.+|..|.||||+|+..++.+++++|++
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 5555555555555555555554 33445555666666666666666666666653
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.7e-34 Score=270.88 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=196.3
Q ss_pred CcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhC
Q 040043 8 GHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ 87 (539)
Q Consensus 8 g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~ 87 (539)
|+.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 78899999999999876777999999999999999999999999999887 66899999999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC
Q 040043 88 SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG 167 (539)
Q Consensus 88 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 167 (539)
+.......+..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g 158 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNRE 158 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTC
T ss_pred CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCC
Confidence 87444467889999999999999999999999998887 788999999999999999999999999999999886 9999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043 168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225 (539)
Q Consensus 168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~ 225 (539)
.||||+|+..|+.++++.|++.+.+ ++..|..|.||||+|+..++.+++++|++...
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 9999999999999999999998754 78899999999999999999999999998743
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=297.30 Aligned_cols=258 Identities=16% Similarity=0.113 Sum_probs=204.8
Q ss_pred cccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccc----------------cccCCChH
Q 040043 5 TGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATL----------------LNQERQSA 68 (539)
Q Consensus 5 a~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~----------------~~~~g~tp 68 (539)
......++|++|++.+.+ ++..|..|.|+++ |+.++++.|+++|.+.... ......+.
T Consensus 27 ~~~~~~dlv~~ll~~ga~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1sw6_A 27 IITFTHDLTSDFLSSPLK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 100 (327)
T ss_dssp EEECCTTCCCSTTTSSCC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred hhhhcCchHHHHhhCCcc-cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccch
Confidence 334556788999999888 7889999999988 9999999999988654210 11112234
Q ss_pred HHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC---
Q 040043 69 FLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN--- 145 (539)
Q Consensus 69 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~--- 145 (539)
+|+|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+
T Consensus 101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~ 179 (327)
T 1sw6_A 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYD 179 (327)
T ss_dssp ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHH
T ss_pred hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhccccc
Confidence 588888888999999999999888447999999999999999999999999999887 7889999999999999998
Q ss_pred HHHHHHHHcCC-CccccccccCCCCHHHHHHH----cCCHHHHHHHHHhC-------------------CCccccccCCC
Q 040043 146 VEITKLLLNSK-PDMALQYNNNGYTPLHQAAI----NGHVKILEAFIASS-------------------PTSFNCLTTDG 201 (539)
Q Consensus 146 ~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~g 201 (539)
.++++.|++.+ ++++.. |..|+||||+|+. .|+.++++.|++.. ...++..+..|
T Consensus 180 ~~~~~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g 258 (327)
T 1sw6_A 180 SGTFEALLDYLYPCLILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258 (327)
T ss_dssp TTCHHHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred HHHHHHHHHhhhccccCC-CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence 67777777776 455554 9999999999999 89999999999873 45678889999
Q ss_pred CcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHc
Q 040043 202 DTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKES 281 (539)
Q Consensus 202 ~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~ 281 (539)
.||||.|+. +++|++. .++.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|++.
T Consensus 259 ~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 259 KDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp -CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC-
T ss_pred CChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhc
Confidence 999999985 8888876 4889999999999999999999999999954 999999999999999999765
Q ss_pred C
Q 040043 282 G 282 (539)
Q Consensus 282 ~ 282 (539)
|
T Consensus 327 g 327 (327)
T 1sw6_A 327 E 327 (327)
T ss_dssp -
T ss_pred C
Confidence 3
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-33 Score=276.20 Aligned_cols=237 Identities=19% Similarity=0.208 Sum_probs=208.3
Q ss_pred HcCCH-HHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040043 40 RQGNA-EISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEI 118 (539)
Q Consensus 40 ~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L 118 (539)
+..+. ++.++|.+.+ .+..|..|.||||+|+..|+.+++++|++++.+++.. +|.||||+|+..|+.+++++|
T Consensus 8 ~~~~~~~v~~lL~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHSTT---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHhCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHH
Confidence 33444 4555555543 3678999999999999999999999999999887732 599999999999999999999
Q ss_pred HhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCC-CCHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 040043 119 LKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNG-YTPLHQAAINGHVKILEAFIASSPTSFNCL 197 (539)
Q Consensus 119 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~ 197 (539)
++.++++ +..|..|+||||+|+..|+.+++++|+++|++++.. +..| .||||+|+..|+.++++.|++.++.. .
T Consensus 82 l~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~ 156 (285)
T 3kea_A 82 LFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---F 156 (285)
T ss_dssp HHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---C
T ss_pred HHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---c
Confidence 9999887 778999999999999999999999999999999876 8888 89999999999999999999998664 3
Q ss_pred cC-CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH-HHHHHHcCCHHHHHHHhhccccCccccccCCCCHH
Q 040043 198 TT-DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV-LHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTAL 275 (539)
Q Consensus 198 d~-~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l 275 (539)
+. .|+||||+|+..|+.+++++|++. +..++.+|..|+|| ||+|+..++.+++++|++. |++++.+|.
T Consensus 157 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~------ 226 (285)
T 3kea_A 157 DLAILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSANL------ 226 (285)
T ss_dssp CCSTHHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTTG------
T ss_pred cccCCccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCh------
Confidence 33 899999999999999999999998 56789999999998 9999999999999999955 999999985
Q ss_pred HHHHHcCCchhhHHHhhhccCCC
Q 040043 276 DVLKESGTKEAFSSELQSVEEPN 298 (539)
Q Consensus 276 ~~a~~~~~~~~~~~~l~~~~~~~ 298 (539)
.+...|+.++++.+++.+.+..
T Consensus 227 -~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 227 -ENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp -GGGTTTCHHHHHHHHHHHHHHT
T ss_pred -hhhhcCCHHHHHHHHHcCCCCC
Confidence 3456789999999999876643
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-34 Score=282.62 Aligned_cols=242 Identities=21% Similarity=0.234 Sum_probs=205.5
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||.||..|+.++|++|++.+.+ ++..|..|.||||+||..|+.+++++|++.|+++ +..|..|.||||+|+..|+.++
T Consensus 44 l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~ 121 (299)
T 1s70_B 44 FLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDI 121 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHH
Confidence 5889999999999999999987 7889999999999999999999999999999887 6689999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 160 (539)
+++|++++.++. ..+..|.||||+|+..++.++++.++.......+..+..+.++++ ..++.++..+....
T Consensus 122 v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 122 AEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHIND 192 (299)
T ss_dssp HHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCC
T ss_pred HHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcch
Confidence 999999998877 678899999999999999999999987654433433333334433 33455666666665
Q ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcH
Q 040043 161 LQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTV 240 (539)
Q Consensus 161 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~ 240 (539)
...+..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+..|+.+++++|++. +..++.+|..|+||
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~ 268 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTA 268 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC-CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCH
Confidence 5568899999999999999999999998764 4788999999999999999999999999997 56788999999999
Q ss_pred HHHHHHcCCHHHHHHHhh
Q 040043 241 LHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 241 Lh~A~~~~~~~iv~~Ll~ 258 (539)
||+|+.. ..+.++.+++
T Consensus 269 l~~A~~~-~~~~l~~l~~ 285 (299)
T 1s70_B 269 FDVADED-ILGYLEELQK 285 (299)
T ss_dssp TTSCCSG-GGHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHH
Confidence 9999754 3455555553
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-31 Score=253.37 Aligned_cols=197 Identities=20% Similarity=0.242 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhc-CcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc----cccCCCCCcHHH
Q 040043 30 KLETPLHEACRQGNAEISALLLKT-NLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME----FEEDRDESTPLH 104 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~----~~~~~~g~t~Lh 104 (539)
.|+||||.|++.|+.++++.|++. +.++ +..|..|.||||+|+..|+.+++++|++++++.. ...+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 588999999999999999999987 5555 6678889999999999999999999998887653 234567888888
Q ss_pred HHHHcCCHHHHHHHHhcCCccccccCC-------------CCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHH
Q 040043 105 VAISRGKIDIVKEILKVRPSFCEQADK-------------NRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL 171 (539)
Q Consensus 105 ~A~~~g~~~~v~~LL~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 171 (539)
+|+..|+.+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++++.. |..|.|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence 888888888888888877665 33332 3555555555555555555555555544443 44455555
Q ss_pred HHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccc---cccccccCCCCcHHHHHHHcC
Q 040043 172 HQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFT---GLLHQQDQFGNTVLHLAILRN 248 (539)
Q Consensus 172 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~---~~~~~~d~~G~T~Lh~A~~~~ 248 (539)
|+|+..|+.+++.. ++++|++..... ...+.+|..|+||||+|+..|
T Consensus 159 ~~A~~~~~~~~~~~------------------------------i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g 208 (232)
T 2rfa_A 159 HILILQPNKTFACQ------------------------------MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208 (232)
T ss_dssp HHHHTCSCHHHHHH------------------------------HHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred HHHHHcCChHHHHH------------------------------HHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence 55555554444400 004444432211 112466677777777777777
Q ss_pred CHHHHHHHhhc
Q 040043 249 NYQLAEYIIKK 259 (539)
Q Consensus 249 ~~~iv~~Ll~~ 259 (539)
+.+++++|+++
T Consensus 209 ~~~~v~~Ll~~ 219 (232)
T 2rfa_A 209 NIVMFQHLMQK 219 (232)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77777777744
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=4.2e-33 Score=265.35 Aligned_cols=214 Identities=18% Similarity=0.196 Sum_probs=137.5
Q ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcCcc---cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 040043 26 AVNEKLETPLHEACRQGNAEISALLLKTNLF---VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP 102 (539)
Q Consensus 26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~ 102 (539)
.+|..|+||||+|+..|+.++++.|++.+.. ..+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence 4678899999999999999998888887653 236677788888888888888888888888887766 466777888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCc-----cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccccc-CCCCHHHHHHH
Q 040043 103 LHVAISRGKIDIVKEILKVRPS-----FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN-NGYTPLHQAAI 176 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~Aa~ 176 (539)
||+|+..|+.++++.|++.+++ ..+..|..|.||||+|+..|+.+++++|+++|++++.. +. .|.||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence 8888888888888888776643 23445555666666666666666666666666655554 33 55555555555
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHH
Q 040043 177 NGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYI 256 (539)
Q Consensus 177 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L 256 (539)
.|+.++++.|++.+ ..++.+|..|+||||+|+..++.+++++|
T Consensus 161 ~~~~~~v~~Ll~~g-------------------------------------a~~~~~~~~g~tpl~~A~~~~~~~~~~~L 203 (236)
T 1ikn_D 161 LQNPDLVSLLLKCG-------------------------------------ADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203 (236)
T ss_dssp TTCHHHHHHHHTTT-------------------------------------CCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred cCCHHHHHHHHHcC-------------------------------------CCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence 55555555555443 33455555666666666666666666666
Q ss_pred hhccccCcc--ccccCCCCHHHHHH
Q 040043 257 IKKTKVDKN--CRNYTNQTALDVLK 279 (539)
Q Consensus 257 l~~~~~~~~--~~n~~g~t~l~~a~ 279 (539)
++. |++.. .++.+|.||.+.+.
T Consensus 204 l~~-ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 204 GQL-TLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp HTT-SCGGGSSCCCCCTTTCCCCC-
T ss_pred HHc-chhhhhcCCccchHHHHhhhc
Confidence 633 55444 55666666655443
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=4e-31 Score=250.81 Aligned_cols=208 Identities=20% Similarity=0.238 Sum_probs=169.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc----cccCCCCChHHh
Q 040043 64 ERQSAFLLACRRGHVNVVKLMLNQ-SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFC----EQADKNRCLPLH 138 (539)
Q Consensus 64 ~g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~----~~~d~~g~tpLh 138 (539)
.|+||||.|+..|+.+++++|++. +.+++ ..|..|.||||+|+..|+.++++.|++.+++.. +..|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 478888888888888888888887 66655 567888888888888888888888888877653 345667888888
Q ss_pred HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHH
Q 040043 139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI 218 (539)
Q Consensus 139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~ 218 (539)
+|+..|+.+++++|+++|++++.. +... .+ ....+..|..|+||||+|+..|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~--~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSAR-ATGS--VF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCC-CCSG--GG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcc-cCCc--ce-------------------eecccccccCCCCHHHHHHHcCCHHHHH
Confidence 888888888888888888877654 2221 11 1123456778999999999999999999
Q ss_pred HHHhhcccccccccccCCCCcHHHHHHHcCCHHHH----HHHhhccccCc------cccccCCCCHHHHHHHcCCchhhH
Q 040043 219 FLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLA----EYIIKKTKVDK------NCRNYTNQTALDVLKESGTKEAFS 288 (539)
Q Consensus 219 ~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv----~~Ll~~~~~~~------~~~n~~g~t~l~~a~~~~~~~~~~ 288 (539)
+|++. +.+++.+|.+|+||||+|+..++.+++ ++|++. |+++ +.+|..|+|||++|+..|+.++++
T Consensus 139 ~Ll~~---ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 139 LLIEH---GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHT---TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHC---CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence 99987 567899999999999999999999988 888854 7777 689999999999999999999999
Q ss_pred HHhhhccCCC
Q 040043 289 SELQSVEEPN 298 (539)
Q Consensus 289 ~~l~~~~~~~ 298 (539)
.+++.+..+.
T Consensus 215 ~Ll~~g~~~~ 224 (232)
T 2rfa_A 215 HLMQKRKHIA 224 (232)
T ss_dssp HHHHHHHHC-
T ss_pred HHHhcCccch
Confidence 9999876654
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=9e-31 Score=242.53 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=122.9
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 108 (539)
..+.||||.|+..|+.+.++.|++.++...+..|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence 4677888888888888888888877764446667777777777777777777777777777665 456667777777777
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC-CccccccccCCCCHHHHHHHcCC-----HHH
Q 040043 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK-PDMALQYNNNGYTPLHQAAINGH-----VKI 182 (539)
Q Consensus 109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~Aa~~g~-----~~~ 182 (539)
.|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+ .+++.. |..|.||||+|+..++ .++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCC-CTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCC-CCCCCCHHHHHHHhccchhhHHHH
Confidence 777777777775555444566666666666666666666666666666 444443 5666666666666555 555
Q ss_pred HHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHh
Q 040043 183 LEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAE 222 (539)
Q Consensus 183 v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~ 222 (539)
++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++
T Consensus 161 v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 161 VKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 5555554422 34444445555555555555555544443
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.7e-32 Score=261.16 Aligned_cols=199 Identities=24% Similarity=0.262 Sum_probs=168.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCc---cccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHH
Q 040043 95 EDRDESTPLHVAISRGKIDIVKEILKVRPS---FCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPL 171 (539)
Q Consensus 95 ~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 171 (539)
.|.+|.||||+|+..|+.++++.|++.++. ..+..|..|+||||+|+..|+.+++++|+++|++++.. |..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHH
Confidence 566778888888888887777777776553 34777888899999999999999999999998888776 88899999
Q ss_pred HHHHHcCCHHHHHHHHHhCCC-----ccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccC-CCCcHHHHHH
Q 040043 172 HQAAINGHVKILEAFIASSPT-----SFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQ-FGNTVLHLAI 245 (539)
Q Consensus 172 h~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~-~G~T~Lh~A~ 245 (539)
|+|+..|+.++++.|++.++. .++..+..|.||||+|+..|+.+++++|++. +..++.+|. .|+||||+|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~ 159 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---GADVNAQEPCNGRTALHLAV 159 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999887743 3577788999999999999999999999987 567888887 9999999999
Q ss_pred HcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCCC
Q 040043 246 LRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEPN 298 (539)
Q Consensus 246 ~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~~ 298 (539)
..++.+++++|++. |++++.+|..|+||+++|...++.++++.+++.++++.
T Consensus 160 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 160 DLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence 99999999999955 99999999999999999999999999999999877543
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.1e-30 Score=242.08 Aligned_cols=191 Identities=23% Similarity=0.279 Sum_probs=106.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc
Q 040043 98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177 (539)
Q Consensus 98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 177 (539)
.+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence 34555555555555555555555554333455555555555555555555555555555555543 55555555555555
Q ss_pred CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCC-----HHH
Q 040043 178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNN-----YQL 252 (539)
Q Consensus 178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~-----~~i 252 (539)
|+.++++.|++..+..++..|..|.||||+|+..++.+++++|++... ..++.+|..|+||||+|+..++ .++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--CCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 555555555555544555555555555555555555555555555421 2355555555555555555554 555
Q ss_pred HHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043 253 AEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQ 292 (539)
Q Consensus 253 v~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~ 292 (539)
+++|++. |++++.+|..|+||+++|...|+.++++.+++
T Consensus 161 v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 161 VKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 5555533 55555555556666666655555555555544
No 46
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.5e-32 Score=273.29 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=182.7
Q ss_pred ecccCcHHHHHHHHHhCChhhhc-----------------cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCC
Q 040043 4 ATGFGHIELVTEIIKLCPQLVAA-----------------VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQ 66 (539)
Q Consensus 4 Aa~~g~~e~v~~Ll~~~~~~l~~-----------------~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 66 (539)
++..|+.++|+.|++.+.+. +. +.....+.+|.|+..+..++++.|++.+.++....|..|.
T Consensus 54 ~~~~g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~ 132 (327)
T 1sw6_A 54 VNDNEQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN 132 (327)
T ss_dssp CCCHHHHHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCC
T ss_pred cccCchhHHHHHHHHhccCC-ccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCC
Confidence 45569999999999986321 11 1112223468888888999999999999988444899999
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCccccccCCCCChHHhHHHH-
Q 040043 67 SAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK---IDIVKEILKVRPSFCEQADKNRCLPLHYASR- 142 (539)
Q Consensus 67 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~- 142 (539)
||||+|+..|+.++|++|+++|++++ ..|..|.||||+|+..|+ .++++.|++.+....+..|..|+||||+|+.
T Consensus 133 TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~ 211 (327)
T 1sw6_A 133 TPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211 (327)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999987 688999999999999998 6888888888755568899999999999999
Q ss_pred ---cCCHHHHHHHHcC--------------------CCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 040043 143 ---IGNVEITKLLLNS--------------------KPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTT 199 (539)
Q Consensus 143 ---~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 199 (539)
.|+.+++++|++. |++++.. +..|.||||.|+. ++.|++. .++..|.
T Consensus 212 ~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~ 281 (327)
T 1sw6_A 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDSILENLD------LKWIIAN---MLNAQDS 281 (327)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTTCCCT
T ss_pred ccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCChhHHHHH------HHHHHHh---CCCCCCC
Confidence 8999999999987 7777766 8999999999996 7888887 3788999
Q ss_pred CCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 040043 200 DGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248 (539)
Q Consensus 200 ~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~ 248 (539)
.|+||||+|+.+|+.+++++|++. +.+++.+|.+|+||||+|++.|
T Consensus 282 ~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 282 NGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHhcC
Confidence 999999999999999999999987 6679999999999999998654
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.5e-30 Score=253.46 Aligned_cols=223 Identities=18% Similarity=0.234 Sum_probs=144.0
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhc----Cccccc---ccccCCChHHHHHHHc---CCHHHHHHHHhCCccccc
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKT----NLFVAT---LLNQERQSAFLLACRR---GHVNVVKLMLNQSWLMEF 93 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~ 93 (539)
.+..|..|+||||.||+.|+.++++.|++. +.++.. ..+..|.||||+|+.. |+.+++++|++++++...
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 345777888888888888888877777763 333211 3466777777777765 777777777777654320
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccccccc--------
Q 040043 94 EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNN-------- 165 (539)
Q Consensus 94 ~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-------- 165 (539)
++.++... ....|..|+||||+|+..|+.+++++|+++|++++.. +.
T Consensus 86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~ 140 (273)
T 2pnn_A 86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTK 140 (273)
T ss_dssp ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCS
T ss_pred ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-cccccccccc
Confidence 01111111 1224556777777777777777777777777776665 43
Q ss_pred ------CCCCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHHhCC---------hhHHHHHHhhccccc
Q 040043 166 ------NGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGK---------YNAFIFLAESFDFTG 228 (539)
Q Consensus 166 ------~g~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~~~~---------~~~v~~Ll~~~~~~~ 228 (539)
.|.||||+|+..|+.++++.|++. .+.+++.+|.+|+||||+|+..++ .+++++|++.+ .
T Consensus 141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a 217 (273)
T 2pnn_A 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---A 217 (273)
T ss_dssp SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---H
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---h
Confidence 688888888888888888888873 345577788888888888888777 67888887763 3
Q ss_pred cc-------ccccCCCCcHHHHHHHcCCHHHHHHHhhcccc-CccccccCCCCHH
Q 040043 229 LL-------HQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV-DKNCRNYTNQTAL 275 (539)
Q Consensus 229 ~~-------~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~-~~~~~n~~g~t~l 275 (539)
.+ +.+|..|+||||+|+..|+.+++++|+++ |+ |+......+.+|-
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC-------------
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhhhhhcc
Confidence 34 35888899999999999999999999865 55 7777776666553
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.4e-30 Score=248.35 Aligned_cols=201 Identities=17% Similarity=0.205 Sum_probs=122.0
Q ss_pred CCCHHHHHHHcCCHH----HHHHHHhcCccccc---ccccCCChHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCC
Q 040043 31 LETPLHEACRQGNAE----ISALLLKTNLFVAT---LLNQERQSAFLLACRR---GHVNVVKLMLNQSWLMEFEEDRDES 100 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~g~ 100 (539)
|+||||.||..|+.+ ++++|++.+.++.. ..|..|.||||+|+.. |+.+++++|++++.+.....
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~----- 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK----- 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS-----
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh-----
Confidence 677778888777776 55566666766632 2567777777777777 77777777777665543110
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccC-------------C
Q 040043 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNN-------------G 167 (539)
Q Consensus 101 t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g 167 (539)
.++.. .....|..|.||||+|+..|+.+++++|+++|++++.. +.. |
T Consensus 77 ----------------~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 77 ----------------PLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp ----------------CGGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCSC
T ss_pred ----------------hhccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccCC
Confidence 00000 00123445666666666666666666666666666554 333 6
Q ss_pred CCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHH--hCChh-------HHHHHHhhccccccc------
Q 040043 168 YTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALR--FGKYN-------AFIFLAESFDFTGLL------ 230 (539)
Q Consensus 168 ~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~--~~~~~-------~v~~Ll~~~~~~~~~------ 230 (539)
.||||+|+..|+.++++.|++. .+.+++..|.+|+||||+|+. .++.+ ++++|++. +..+
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~~ 213 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQL 213 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCCG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCccccccc
Confidence 6666666666666666666662 233455566666666666665 45555 66666665 2333
Q ss_pred -ccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 231 -HQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 231 -~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
+.+|..|+||||+|+..|+.+++++|+++
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 66777777777777777777777777744
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2e-30 Score=249.96 Aligned_cols=186 Identities=20% Similarity=0.193 Sum_probs=121.9
Q ss_pred CceecccCcHH----HHHHHHHhCChhhhc----cccCCCCHHHHHHHc---CCHHHHHHHHhcCcccccc---------
Q 040043 1 IKAATGFGHIE----LVTEIIKLCPQLVAA----VNEKLETPLHEACRQ---GNAEISALLLKTNLFVATL--------- 60 (539)
Q Consensus 1 Lh~Aa~~g~~e----~v~~Ll~~~~~~l~~----~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~--------- 60 (539)
||.||+.|+.+ ++++|++.+.+ ++. +|..|.||||+|+.. |+.+++++|++.+++....
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 68999999998 55666667776 565 899999999999999 9999999999998876322
Q ss_pred -cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh---cCC
Q 040043 61 -LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD-------------ESTPLHVAISRGKIDIVKEILK---VRP 123 (539)
Q Consensus 61 -~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~LL~---~~~ 123 (539)
.|..|.||||+|+..|+.+++++|++++++++ ..+.. |.||||+|+..|+.+++++|++ .+.
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga 163 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 23668888888888888888888888887776 33333 5555555555555555555555 444
Q ss_pred ccccccCCCCChHHhHHHH--cCCHH-------HHHHHHcCCCcc-------ccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043 124 SFCEQADKNRCLPLHYASR--IGNVE-------ITKLLLNSKPDM-------ALQYNNNGYTPLHQAAINGHVKILEAFI 187 (539)
Q Consensus 124 ~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~-------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 187 (539)
++ +..|..|+||||+|+. .++.+ ++++|+++|+++ +.. |..|.||||+|+..|+.++++.|+
T Consensus 164 ~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~-d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 164 SL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred Cc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc-CCCCCCHHHHHHHhCCHHHHHHHH
Confidence 43 4445555555555555 44444 555555555544 222 444555555555555555555544
Q ss_pred HhC
Q 040043 188 ASS 190 (539)
Q Consensus 188 ~~~ 190 (539)
+++
T Consensus 242 ~~g 244 (256)
T 2etb_A 242 QRE 244 (256)
T ss_dssp HHH
T ss_pred hCC
Confidence 443
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=6.5e-30 Score=229.93 Aligned_cols=155 Identities=26% Similarity=0.398 Sum_probs=119.3
Q ss_pred HHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHH
Q 040043 34 PLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKID 113 (539)
Q Consensus 34 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~ 113 (539)
+|+.||+.|+.++|+.|++.|+++ +.+|.+|.||||+|+..++.+++++|++++.+++ ..|.+|.||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHH
Confidence 577788888888888888877776 5677778888888888888888888888777766 56777788888888888888
Q ss_pred HHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q 040043 114 IVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPT 192 (539)
Q Consensus 114 ~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 192 (539)
+++.|++.++++ +.+|.+|+||||+|+..|+.+++++|++.|++++.. |.+|+||||+|++.|+.++++.|++++.+
T Consensus 85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 888888877776 667777888888888888888888888888777765 77788888888888888888877776644
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.1e-30 Score=252.31 Aligned_cols=202 Identities=19% Similarity=0.201 Sum_probs=137.6
Q ss_pred CceecccCcHHHHHHHHHhC----Chh---hhccccCCCCHHHHHHHc---CCHHHHHHHHhcCcccc------c----c
Q 040043 1 IKAATGFGHIELVTEIIKLC----PQL---VAAVNEKLETPLHEACRQ---GNAEISALLLKTNLFVA------T----L 60 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~----~~~---l~~~n~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~------~----~ 60 (539)
||.|++.|+.++|+.|++.+ ... ....|..|.||||+|+.. |+.+++++|++.+++.. + .
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence 68999999999999999842 221 114688999999999987 99999999999987531 1 1
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCC
Q 040043 61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDR--------------DESTPLHVAISRGKIDIVKEILK---VRP 123 (539)
Q Consensus 61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~~LL~---~~~ 123 (539)
.|..|.||||+|+..|+.+++++|++++++++. .+. .|.||||+|+..|+.+++++|++ .+.
T Consensus 97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 456788888888888888888888888887763 333 56677777777777777777776 555
Q ss_pred ccccccCCCCChHHhHHHHcCC---------HHHHHHHHcCCCcccc------ccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043 124 SFCEQADKNRCLPLHYASRIGN---------VEITKLLLNSKPDMAL------QYNNNGYTPLHQAAINGHVKILEAFIA 188 (539)
Q Consensus 124 ~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~Aa~~g~~~~v~~Ll~ 188 (539)
++ +..|..|+||||+|+..|+ .+++++|+++|++++. ..|..|.||||+|+..|+.++++.|++
T Consensus 176 d~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 176 DI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254 (273)
T ss_dssp CT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred Cc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH
Confidence 54 5666667777777776666 5666667766666642 236666666666666666666666666
Q ss_pred hCCCccccccCCCCcH
Q 040043 189 SSPTSFNCLTTDGDTV 204 (539)
Q Consensus 189 ~~~~~~~~~d~~g~t~ 204 (539)
++..+.......+.+|
T Consensus 255 ~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 255 REIHEPECRHAAAHHH 270 (273)
T ss_dssp HHTC------------
T ss_pred CCCCCchhhhhhhhhc
Confidence 6654444444444443
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=4.6e-29 Score=224.37 Aligned_cols=155 Identities=28% Similarity=0.396 Sum_probs=87.2
Q ss_pred ceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHH
Q 040043 2 KAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVV 81 (539)
Q Consensus 2 h~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv 81 (539)
+.||+.|+.++|+.|++.+.+ ++.+|..|.||||+|+..|+.++++.|++.++++ +.+|.+|.||||+|+..|+.+++
T Consensus 9 ~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v 86 (169)
T 4gpm_A 9 IEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVV 86 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHH
Confidence 445555666666666655555 4555555666666666666666666666555554 44555555666666666666666
Q ss_pred HHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccc
Q 040043 82 KLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMA 160 (539)
Q Consensus 82 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 160 (539)
++|++++++++ ..|.+|.||||+|+..|+.++++.|++.++++ +..|.+|+||||+|+..|+.+++++|+++|+++.
T Consensus 87 ~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 87 KLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 66665555554 34555556666666666666666666555554 4555555666666666666666666665555543
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4e-29 Score=241.34 Aligned_cols=207 Identities=15% Similarity=0.132 Sum_probs=128.4
Q ss_pred ccCCCCHHHHHHHcCCHHHHHHHH----hcCcccccc---cccCCChHHHHHH---HcCCHHHHHHHHhCCcccccccCC
Q 040043 28 NEKLETPLHEACRQGNAEISALLL----KTNLFVATL---LNQERQSAFLLAC---RRGHVNVVKLMLNQSWLMEFEEDR 97 (539)
Q Consensus 28 n~~g~TpLh~Aa~~g~~~iv~~Ll----~~~~~~~~~---~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~~~~~~~ 97 (539)
|..|+||||.||+.|+.+.++.|+ +.+.++... .+..|.||||+|+ ..|+.+++++|++.+.+....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--- 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--- 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence 456777777777777777444443 366555221 1255777777776 557777777777665433200
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccc-------------
Q 040043 98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYN------------- 164 (539)
Q Consensus 98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d------------- 164 (539)
..++. . ..+..|..|+||||+|+..|+.+++++|+++|++++.. +
T Consensus 79 ------------------~~~~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~ 136 (260)
T 3jxi_A 79 ------------------REFIN--S-PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGY 136 (260)
T ss_dssp ------------------HHHHT--C-CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCS
T ss_pred ------------------Hhhhc--c-cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCccccccc
Confidence 00111 1 12344557888888888888888888888888877765 4
Q ss_pred -cCCCCHHHHHHHcCCHHHHHHHHHh--CCCccccccCCCCcHHHHHHHhCC---------hhHHHHHHhhcccc----c
Q 040043 165 -NNGYTPLHQAAINGHVKILEAFIAS--SPTSFNCLTTDGDTVFHLALRFGK---------YNAFIFLAESFDFT----G 228 (539)
Q Consensus 165 -~~g~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~t~Lh~Av~~~~---------~~~v~~Ll~~~~~~----~ 228 (539)
..|.||||+|+..|+.++++.|++. .+.+++..|..|+||||+|+..++ .+++++|++.+... .
T Consensus 137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~ 216 (260)
T 3jxi_A 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216 (260)
T ss_dssp CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence 4577777777777777777777763 234466666667777777766655 46666666652210 0
Q ss_pred ccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 229 LLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 229 ~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
..+.+|..|+||||+|+..|+.+++++|+++
T Consensus 217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 1155677777777777777777777777754
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=241.68 Aligned_cols=196 Identities=18% Similarity=0.251 Sum_probs=169.6
Q ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhcCcc-cccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 28 NEKLETPLHEACRQGNAEISALLLKTNLF-VATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 28 n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
+..+.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|.||||+|+..|+.+++++|++.+.......+..|.||||+|
T Consensus 73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 34567889999999999999999887654 23678889999999999999999999999999833336788999999999
Q ss_pred H-----HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHH
Q 040043 107 I-----SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVK 181 (539)
Q Consensus 107 ~-----~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~ 181 (539)
+ ..++.++++.|++.+... +..|..|+||||+|+..|+.+++++|++.|++++.. |.+|+||||+|+..|+.+
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKE 230 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHH
Confidence 9 668889999999988665 677888999999999999999999999999998876 899999999999999999
Q ss_pred HHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcc
Q 040043 182 ILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFD 225 (539)
Q Consensus 182 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~ 225 (539)
+++.|++..+.+++..|..|+||||+|+..|+.+++++|++...
T Consensus 231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99999985666788899999999999999999999999998754
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.6e-29 Score=241.68 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=129.6
Q ss_pred CceecccCcHHHHHHHHH----hCChhhhccc----cCCCCHHHHHH---HcCCHHHHHHHHhcCccc----------cc
Q 040043 1 IKAATGFGHIELVTEIIK----LCPQLVAAVN----EKLETPLHEAC---RQGNAEISALLLKTNLFV----------AT 59 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~----~~~~~l~~~n----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~----------~~ 59 (539)
||.|++.|+.+.|+.|++ .+.+ ++..+ ..|.||||+|+ +.|+.+++++|++.+++. ..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 688999999997666666 6665 44444 77999999999 779999999999987542 12
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccC--------------CCCCcHHHHHHHcCCHHHHHHHHh---cC
Q 040043 60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEED--------------RDESTPLHVAISRGKIDIVKEILK---VR 122 (539)
Q Consensus 60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~LL~---~~ 122 (539)
..|..|.||||+|+..|+.+++++|++++++++. .+ ..|.||||+|+..|+.+++++|++ .+
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 3345788888888888888888888888877763 33 356666666666666666666666 45
Q ss_pred CccccccCCCCChHHhHHHHcCC---------HHHHHHHHcCCCccc------cccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043 123 PSFCEQADKNRCLPLHYASRIGN---------VEITKLLLNSKPDMA------LQYNNNGYTPLHQAAINGHVKILEAFI 187 (539)
Q Consensus 123 ~~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 187 (539)
.++ +..|..|+||||+|+..++ .+++++|+++|++++ ...|..|.||||+|+..|+.++++.|+
T Consensus 167 a~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 167 ADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 544 5556666666666666555 466666666666552 122556666666666666666666666
Q ss_pred HhCC
Q 040043 188 ASSP 191 (539)
Q Consensus 188 ~~~~ 191 (539)
++++
T Consensus 246 ~~g~ 249 (260)
T 3jxi_A 246 RREI 249 (260)
T ss_dssp HHHH
T ss_pred HhCC
Confidence 5553
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=238.41 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=174.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCcc--cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 64 ERQSAFLLACRRGHVNVVKLMLNQSWL--MEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
.+.+++|.|+..|+.+.++.+++...+ ++ ..|.+|.||||+|+..|+.++++.|++.++...+..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n-~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVN-IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCc-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 345788999999999999999887554 33 578899999999999999999999999998566889999999999999
Q ss_pred -----HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhH
Q 040043 142 -----RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNA 216 (539)
Q Consensus 142 -----~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~ 216 (539)
..++.++++.|++.|...... +..|.||||+|+..|+.++++.|++.+. +++..|.+|+||||+|+..|+.++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-d~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINAKA-SQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHHHHCCCHHH
Confidence 668899999999999877765 8899999999999999999999999875 488999999999999999999999
Q ss_pred HHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhcccc
Q 040043 217 FIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKV 262 (539)
Q Consensus 217 v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~ 262 (539)
+++|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++.++
T Consensus 232 v~~Ll~~--~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 232 AGLLLAV--PSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHHHTS--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHHHhc--CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 9999982 2567899999999999999999999999999987665
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=8.2e-28 Score=221.16 Aligned_cols=163 Identities=22% Similarity=0.258 Sum_probs=122.8
Q ss_pred hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcH
Q 040043 23 LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTP 102 (539)
Q Consensus 23 ~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~ 102 (539)
+++.+|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~ 104 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTP 104 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcH
Confidence 45667778888888888888888888888877665 5567777888888888888888888887777665 456677777
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHH
Q 040043 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKI 182 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~ 182 (539)
||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHHH
Confidence 77777777777777777777665 666777777777777777777777777777777665 7777777777777777777
Q ss_pred HHHHHHh
Q 040043 183 LEAFIAS 189 (539)
Q Consensus 183 v~~Ll~~ 189 (539)
++.|++.
T Consensus 183 v~~Ll~~ 189 (192)
T 2rfm_A 183 IKIFTEV 189 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777654
No 58
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=2.8e-30 Score=261.62 Aligned_cols=245 Identities=14% Similarity=0.131 Sum_probs=169.6
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccccccCCChHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCcH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFV--ATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLME--FEEDRDESTP 102 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~--~~~~~~g~t~ 102 (539)
.+.+++||||+||+.|+.+++++|++.++.. ....+..|.||||+|+..|+.++|++|++++++.. ...+.+ .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 3445679999999999999999999998622 12345678899999999999999999999996421 011222 899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccc-ccCCCCChHHhHHH-HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH
Q 040043 103 LHVAISRGKIDIVKEILKVRPSFCE-QADKNRCLPLHYAS-RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~~~~-~~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~ 180 (539)
||+|+..|+.+++++|++.+++... ..|..|.||||+|+ ..|+.+++++|++.|+ .|.||||.|+.+|+.
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence 9999999999999999999988632 26788999999999 9999999999999663 277999999999999
Q ss_pred HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChh---------------------------HHHHHHhhccccccc--c
Q 040043 181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYN---------------------------AFIFLAESFDFTGLL--H 231 (539)
Q Consensus 181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~---------------------------~v~~Ll~~~~~~~~~--~ 231 (539)
+++++|++.+.+ ++..+ ++++.|+.+|+.+ .+++|++........ .
T Consensus 239 evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g 313 (376)
T 2aja_A 239 YVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313 (376)
T ss_dssp THHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred HHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence 999999987643 22222 2344444444443 344444322111111 2
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHH
Q 040043 232 QQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSS 289 (539)
Q Consensus 232 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~ 289 (539)
..+..++||||+|+..|+.+++++|++. ...++..|+||+++|...|..+..+.
T Consensus 314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~----~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 314 TIPGDANELLRLALRLGNQGACALLLSI----PSVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp SSTTCCCHHHHHHHHHTCTTHHHHHTTS----HHHHHSCC------------------
T ss_pred CCCCCccHHHHHHHHcCcHHHHHHHHcC----hHHHHHHHHhccccccccccccHHHH
Confidence 2345688999999999999999999954 47889999999999999887665443
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.3e-27 Score=215.72 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=113.0
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG 110 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 110 (539)
+.||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence 35778888888888888888887777556677777777777777777777777777776665 45666777777777777
Q ss_pred CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043 111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190 (539)
Q Consensus 111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 190 (539)
+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+++.
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 777777777766665 566667777777777777777777777777766654 666777777777777777777666655
Q ss_pred C
Q 040043 191 P 191 (539)
Q Consensus 191 ~ 191 (539)
.
T Consensus 159 ~ 159 (172)
T 3v30_A 159 L 159 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.6e-27 Score=215.05 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=120.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCC
Q 040043 100 STPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGH 179 (539)
Q Consensus 100 ~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~ 179 (539)
.+|||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCCC
Confidence 467777777777777777777776655667777777777777777777777777777776665 6777777777777777
Q ss_pred HHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc
Q 040043 180 VKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK 259 (539)
Q Consensus 180 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 259 (539)
.++++.|++.+. +++..|..|+||||+|+..++.+++++|++. +..++.+|..|+||||+|+..++.+++++|++
T Consensus 82 ~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~- 156 (172)
T 3v30_A 82 TDIVGLLLERDV-DINIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN- 156 (172)
T ss_dssp HHHHHHHHTTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH-
Confidence 777777776653 3666777777777777777777777777776 45577788888888888888888888888884
Q ss_pred cccCccccccCCCCH
Q 040043 260 TKVDKNCRNYTNQTA 274 (539)
Q Consensus 260 ~~~~~~~~n~~g~t~ 274 (539)
.++++..+|..|.||
T Consensus 157 ~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 HILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHSCC-------
T ss_pred HHHHHhcccCCCCCC
Confidence 477777777777776
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=3.2e-27 Score=211.99 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043 30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 109 (539)
.|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence 5789999999999999999999888765 6678889999999999999999999998887776 5677888888888888
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189 (539)
Q Consensus 110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 189 (539)
|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-TDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 8888888888888776 677888888888888888888888888888888775 88888888888888888888888876
Q ss_pred CC
Q 040043 190 SP 191 (539)
Q Consensus 190 ~~ 191 (539)
..
T Consensus 158 ~~ 159 (167)
T 3v31_A 158 LL 159 (167)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6e-27 Score=208.95 Aligned_cols=157 Identities=21% Similarity=0.295 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043 30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 109 (539)
...||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+. |+.+++++|++++.+++ ..+..|.||||.|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence 3456667777777777777766666655 4456666666666666 66666666666665554 3455666666666666
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189 (539)
Q Consensus 110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 189 (539)
|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++.....|..|.||||+|+..|+.++++.|+++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666655554 455566666666666666666666666666654223355666666666666666666666655
Q ss_pred C
Q 040043 190 S 190 (539)
Q Consensus 190 ~ 190 (539)
+
T Consensus 160 G 160 (162)
T 1ihb_A 160 G 160 (162)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.3e-26 Score=208.55 Aligned_cols=159 Identities=26% Similarity=0.362 Sum_probs=116.2
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
....+.||||.||+.|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||.|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence 3445567788888888888888888877766 4567777788888888888888888877776665 4566777777777
Q ss_pred HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186 (539)
Q Consensus 107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L 186 (539)
+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHHHHHHH
Confidence 7777777777777777665 566777777777777777777777777777776655 77777777777777777777777
Q ss_pred HHh
Q 040043 187 IAS 189 (539)
Q Consensus 187 l~~ 189 (539)
++.
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 653
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.9e-26 Score=211.99 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=89.8
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHh
Q 040043 59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLH 138 (539)
Q Consensus 59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh 138 (539)
+.+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 3455566666666666666666666666555444 34555666666666666666666666655554 445555566666
Q ss_pred HHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHH
Q 040043 139 YASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFI 218 (539)
Q Consensus 139 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~ 218 (539)
+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|.||||+|+..++.++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 666666666666666555555544 5555555555555555555555555432 24444455555555555555555555
Q ss_pred HHHh
Q 040043 219 FLAE 222 (539)
Q Consensus 219 ~Ll~ 222 (539)
+|++
T Consensus 185 ~Ll~ 188 (192)
T 2rfm_A 185 IFTE 188 (192)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=2.9e-26 Score=204.44 Aligned_cols=156 Identities=22% Similarity=0.366 Sum_probs=108.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc
Q 040043 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143 (539)
Q Consensus 64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~ 143 (539)
...||||.|+..|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 34577777777777777777777776665 456677777777777 7777777777776665 56677777777777777
Q ss_pred CCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhh
Q 040043 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAES 223 (539)
Q Consensus 144 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~ 223 (539)
|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.+++.++..|..|+||||+|+..++.+++++|++.
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777777776655 667777777777777777777777766655556666666666666666666666666554
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.8e-26 Score=202.81 Aligned_cols=150 Identities=24% Similarity=0.337 Sum_probs=103.9
Q ss_pred CCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCC
Q 040043 32 ETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGK 111 (539)
Q Consensus 32 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~ 111 (539)
.||||.|++.|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCh
Confidence 467777777777777777777776542 46667777777777777777777777766655 456667777777777777
Q ss_pred HHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043 112 IDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186 (539)
Q Consensus 112 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L 186 (539)
.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|
T Consensus 80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHh
Confidence 77777777766665 556666777777777777777777777777666654 66677777777777777666654
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=7.8e-27 Score=209.00 Aligned_cols=160 Identities=26% Similarity=0.340 Sum_probs=115.2
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
.|..|+||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence 466677888888888888888888876655555666777788888888888888887777777665 4566777777777
Q ss_pred HHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHH
Q 040043 107 ISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAF 186 (539)
Q Consensus 107 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~L 186 (539)
+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+. |+.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCChhHhHhc-CChHHHHHH
Confidence 7777777777777776665 566777777777777777777777777777776665 7777777777555 667777776
Q ss_pred HHhC
Q 040043 187 IASS 190 (539)
Q Consensus 187 l~~~ 190 (539)
++.+
T Consensus 160 ~~~g 163 (165)
T 3twr_A 160 RGDA 163 (165)
T ss_dssp HTC-
T ss_pred hhcc
Confidence 6543
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=2.6e-26 Score=206.62 Aligned_cols=152 Identities=26% Similarity=0.329 Sum_probs=142.8
Q ss_pred CceecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHH
Q 040043 1 IKAATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNV 80 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ei 80 (539)
||.||+.|+.++|++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.++
T Consensus 18 l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~ 95 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEI 95 (169)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHH
Confidence 5789999999999999999887 7889999999999999999999999999999887 6688999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC
Q 040043 81 VKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK 156 (539)
Q Consensus 81 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 156 (539)
+++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|
T Consensus 96 ~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 96 VEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999998887 67889999999999999999999999999887 788999999999999999999999999875
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=8.3e-26 Score=202.71 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=74.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043 99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING 178 (539)
Q Consensus 99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 178 (539)
|.||||.|+..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcC
Confidence 444555555555555555555444332 444445555555555555555555555555444443 444555555555555
Q ss_pred CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043 179 HVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 179 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
+.++++.|++.+.+ ++..|..|.||||+|+..++.+++++|++. +..++.+|..|+||||+|+..++.+++++|+
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 55555555544322 344444444444444444444444444443 2334444555555555555555555555554
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2e-29 Score=238.73 Aligned_cols=189 Identities=14% Similarity=0.078 Sum_probs=114.3
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
+.++.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~ 95 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAA 95 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 3445555666666666666666666555544 35556666666666666666666666665554 555666666666666
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCHHHHH--HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHH
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA--AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIF 219 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~ 219 (539)
..|+.+++++|++.|++++...+.+|.||||+| +..|+.++++.|++.+.+ ++..|..|.+++|.++..+.. ++
T Consensus 96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ 171 (229)
T 2vge_A 96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---EL 171 (229)
T ss_dssp HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BC
T ss_pred HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---cc
Confidence 666666666666666666655335666666666 666666666666665532 555566666666644433322 23
Q ss_pred HHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043 220 LAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 220 Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
|++.+. ...++.+|.+|+||||+|+..|+.++|+.++
T Consensus 172 ll~~ga-~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 172 SFREGE-SVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp CBCTTC-EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred Cccccc-cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 333311 1236777888888888888888887776543
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=5.1e-26 Score=206.70 Aligned_cols=161 Identities=24% Similarity=0.360 Sum_probs=128.8
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 108 (539)
..+.+|||.||..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 4577888888888888888888888666667778888888888888888888888888887776 567788888888888
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188 (539)
Q Consensus 109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~ 188 (539)
.|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. |..|.||||+|+..++.++++.|++
T Consensus 82 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC-CTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh-ccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776 677788888888888888888888888888887765 8888888888888888888888877
Q ss_pred hCCC
Q 040043 189 SSPT 192 (539)
Q Consensus 189 ~~~~ 192 (539)
.+.+
T Consensus 160 ~g~~ 163 (179)
T 3f6q_A 160 MGQN 163 (179)
T ss_dssp TTCC
T ss_pred hhcC
Confidence 7654
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=6.7e-26 Score=200.86 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=85.7
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG 110 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 110 (539)
|.||||.|+..|+.++++.|++......+..+..|.||||+ +..|+.+++++|++++.+++ ..|..|.||||.|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence 34566666666666666666665222334455556666666 55666666666666655544 34555555555555555
Q ss_pred CHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHH
Q 040043 111 KIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIA 188 (539)
Q Consensus 111 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~ 188 (539)
+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++. ++++.. |.+|.||||+|+..|+.++++.|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~-~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR-DARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC-CTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 555555555555444 44455555555555555555555555555 444443 5555555555555555555555543
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=1.8e-25 Score=197.57 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=87.4
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCC
Q 040043 66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGN 145 (539)
Q Consensus 66 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~ 145 (539)
.+||+.|+..|+.+++++|++++.+.. .+..|.||||.|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence 456666666666666666666665443 4555666666666666666666666655554 4555566666666666666
Q ss_pred HHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043 146 VEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220 (539)
Q Consensus 146 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L 220 (539)
.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+.+|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGA-DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66666666666665544 5556666666666666666665555532 2444455555555555555555554443
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=7e-26 Score=205.80 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=121.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHc
Q 040043 98 DESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAIN 177 (539)
Q Consensus 98 ~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~ 177 (539)
++.++||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence 45667777777777777777777766555677777777777777777777777777777777665 77777777777777
Q ss_pred CCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043 178 GHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 178 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
|+.++++.|++.+. +++..|..|+||||+|+..++.+++++|++. +..++.+|..|.||||+|+..++.+++++|+
T Consensus 83 ~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 83 GHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 77777777777653 3666777777777777777777777777766 4556777788888888888777777787777
Q ss_pred hccccCccccccCC
Q 040043 258 KKTKVDKNCRNYTN 271 (539)
Q Consensus 258 ~~~~~~~~~~n~~g 271 (539)
+.|++++..+.++
T Consensus 159 -~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 159 -KMGQNLNRIPYKD 171 (179)
T ss_dssp -HTTCCCSCBCCCC
T ss_pred -HhhcCcccCCccc
Confidence 3477777665544
No 75
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=8.4e-29 Score=250.77 Aligned_cols=237 Identities=13% Similarity=0.115 Sum_probs=165.6
Q ss_pred CceecccCcHHHHHHHHHhCCh--hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCccc--ccccccCCChHHHHHHHcC
Q 040043 1 IKAATGFGHIELVTEIIKLCPQ--LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFV--ATLLNQERQSAFLLACRRG 76 (539)
Q Consensus 1 Lh~Aa~~g~~e~v~~Ll~~~~~--~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g 76 (539)
||.||+.|+.++|++|++.+.. .....|..|.||||+||..|+.++|++|++.|++. .+..+.+ .||||+|+..|
T Consensus 96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G 174 (376)
T 2aja_A 96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG 174 (376)
T ss_dssp HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence 6899999999999999998752 12245667889999999999999999999999642 1222333 89999999999
Q ss_pred CHHHHHHHHhCCccccc-ccCCCCCcHHHHHH-HcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHc
Q 040043 77 HVNVVKLMLNQSWLMEF-EEDRDESTPLHVAI-SRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLN 154 (539)
Q Consensus 77 ~~eiv~~Ll~~~~~~~~-~~~~~g~t~Lh~A~-~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 154 (539)
+.++|++|+++++++.. ..+..|.||||+|+ ..|+.+++++|++.+. .|.||||+|+..|+.+++++|++
T Consensus 175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHh
Confidence 99999999999988652 25677999999999 9999999999998542 27899999999999999999999
Q ss_pred CCCccccccccCCCCHHHHHHHcCCH---------------------------HHHHHHHHhCCCc----cccccCCCCc
Q 040043 155 SKPDMALQYNNNGYTPLHQAAINGHV---------------------------KILEAFIASSPTS----FNCLTTDGDT 203 (539)
Q Consensus 155 ~~~~~~~~~d~~g~tpLh~Aa~~g~~---------------------------~~v~~Ll~~~~~~----~~~~d~~g~t 203 (539)
+|++.... + ++++.|+.+|+. +.++.|++..... .......+.+
T Consensus 247 ~ga~~~~~-~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~ 321 (376)
T 2aja_A 247 HVNRLKEM-H----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 321 (376)
T ss_dssp HHHHHHHH-H----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred cCcccccc-c----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence 98876543 2 234444444443 3444444321100 1122346778
Q ss_pred HHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHh
Q 040043 204 VFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYII 257 (539)
Q Consensus 204 ~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll 257 (539)
+||+|+..|+.+++++|++. ...+|..|+|++.+|-..|..++.+.-+
T Consensus 322 ~L~~A~~~g~~e~v~lLl~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 322 LLRLALRLGNQGACALLLSI------PSVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp HHHHHHHHTCTTHHHHHTTS------HHHHHSCC--------------------
T ss_pred HHHHHHHcCcHHHHHHHHcC------hHHHHHHHHhccccccccccccHHHHHH
Confidence 99999999999999999986 2457889999999999999988876544
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.6e-28 Score=229.44 Aligned_cols=202 Identities=18% Similarity=0.149 Sum_probs=167.3
Q ss_pred HHHHHhCCccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043 81 VKLMLNQSWLMEF--EEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158 (539)
Q Consensus 81 v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 158 (539)
++.|++++..+.. ..+.+|.||||.|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|++.|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 3567777766542 34556778999999999999999999999877 78899999999999999999999999999999
Q ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHH--HHhCChhHHHHHHhhcccccccccccC
Q 040043 159 MALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLT-TDGDTVFHLA--LRFGKYNAFIFLAESFDFTGLLHQQDQ 235 (539)
Q Consensus 159 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--v~~~~~~~v~~Ll~~~~~~~~~~~~d~ 235 (539)
++.. |..|+||||+|+..|+.++++.|++.+.+ ++..+ ..|+||||+| +..++.+++++|++. +..++.+|.
T Consensus 80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~ 154 (229)
T 2vge_A 80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNS 154 (229)
T ss_dssp TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGG
T ss_pred CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccC
Confidence 9887 99999999999999999999999988765 56665 6999999999 999999999999998 556888999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhccccC--ccccccCCCCHHHHHHHcCCchhhHHHhh
Q 040043 236 FGNTVLHLAILRNNYQLAEYIIKKTKVD--KNCRNYTNQTALDVLKESGTKEAFSSELQ 292 (539)
Q Consensus 236 ~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~--~~~~n~~g~t~l~~a~~~~~~~~~~~~l~ 292 (539)
.|.||+|.++..+.. ++|+ ..|++ ++.+|..|+|||++|+..|+.++++..+-
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll-~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSF-REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCB-CTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred CchHHHHHHhhcccc---ccCc-cccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 999999976655433 4555 44777 77899999999999999999988876443
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.5e-25 Score=197.14 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=71.4
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCH
Q 040043 101 TPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHV 180 (539)
Q Consensus 101 t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~ 180 (539)
||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.|++++.. |..|.||||+|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcH
Confidence 344444444444444444444222223344444444444 4444444444444444444433 44444444444444444
Q ss_pred HHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 181 KILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 181 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
++++.|++.+ .+++..|..|+||||+|+..|+.+++++|++. ..++.+|.+|+||||+|+..++.+++++|++
T Consensus 82 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 82 DTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT----SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc----cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 4444444443 22344444455555555555555555555443 2344455555555555555555555555553
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=2.3e-25 Score=199.38 Aligned_cols=157 Identities=25% Similarity=0.368 Sum_probs=91.0
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4556666666666666666666666444333344555666666666666666666666665554 555566666666666
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll 221 (539)
..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++.+. +++.+|.+|+||||+|+. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 666666666666666665554 5556666666666666666665555542 244455555555555443 4455555554
Q ss_pred h
Q 040043 222 E 222 (539)
Q Consensus 222 ~ 222 (539)
+
T Consensus 161 ~ 161 (165)
T 3twr_A 161 G 161 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.6e-26 Score=216.12 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=93.7
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 108 (539)
..|.||||.|++.|+.++++.|++.|.++. .+..|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 467888888888888888888888887763 24667888888888888888888888877665 567778888888888
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCC-CHHHHH--HHcCCHHHHHH
Q 040043 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGY-TPLHQA--AINGHVKILEA 185 (539)
Q Consensus 109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A--a~~g~~~~v~~ 185 (539)
.|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++|++++.. +..|. ||||+| +..|+.++++.
T Consensus 80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHHHH
Confidence 88888888888877765 667777888888888888888888888887777765 44444 777777 66677777777
Q ss_pred HHHhC
Q 040043 186 FIASS 190 (539)
Q Consensus 186 Ll~~~ 190 (539)
|++.+
T Consensus 158 Ll~~~ 162 (239)
T 1ycs_B 158 LYGVQ 162 (239)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77654
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.1e-25 Score=214.71 Aligned_cols=182 Identities=18% Similarity=0.155 Sum_probs=114.2
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHH
Q 040043 63 QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASR 142 (539)
Q Consensus 63 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~ 142 (539)
..|.||||.|+..|+.++++.|+++|.+++ .+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 468888888888888888888888888776 3467788888888888888888888887765 7778888888888888
Q ss_pred cCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC-cHHHHH--HHhCChhHHHH
Q 040043 143 IGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGD-TVFHLA--LRFGKYNAFIF 219 (539)
Q Consensus 143 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--v~~~~~~~v~~ 219 (539)
.|+.+++++|+++|++++.. |..|+||||+|+..|+.++++.|++++.+ ++..+..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 88888888888888888776 88888888888888888888888887654 566666555 888888 67788888888
Q ss_pred HHhhccccccc------ccccCCCCcHHHHHHHcCC
Q 040043 220 LAESFDFTGLL------HQQDQFGNTVLHLAILRNN 249 (539)
Q Consensus 220 Ll~~~~~~~~~------~~~d~~G~T~Lh~A~~~~~ 249 (539)
|++........ ...|..|.++++++...|.
T Consensus 158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 88764332221 2236667777777776665
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.4e-23 Score=186.03 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=112.2
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCc-H
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDEST-P 102 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t-~ 102 (539)
....+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+ .|+.+++++|++++.+++ ..+..|.| |
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttp 81 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRP 81 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHH
Confidence 3456788999999999999999999999998877 667889999999985 899999999999988877 57888888 9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH
Q 040043 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 174 (539)
||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||.+.+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~~~~~ 151 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-NHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc-CcCcCcccccC
Confidence 99999999999999999998877 778889999999999999999999999999998876 88888887643
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=1.1e-23 Score=182.13 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=91.1
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCC-CCcH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRD-ESTP 102 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~-g~t~ 102 (539)
++..|..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+. |+.+++++|++++.+++ ..+.. |.||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCH
Confidence 5566777777777777777777777777777665 4566777777777777 77777777777776665 34555 6677
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 158 (539)
||+|+..|+.++++.|++.++++ +..|..|.||||+|+..++.+++++|+++|++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777777666655 55666666777777776677777766666553
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=2.7e-23 Score=184.24 Aligned_cols=145 Identities=20% Similarity=0.211 Sum_probs=102.6
Q ss_pred cccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-HH
Q 040043 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDT-VF 205 (539)
Q Consensus 127 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L 205 (539)
...+..|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+ .|+.++++.|++.+ .+++..|..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHHH
Confidence 345667788888888888888888888888877765 778888888874 78888888888765 446777888888 88
Q ss_pred HHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHH
Q 040043 206 HLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVL 278 (539)
Q Consensus 206 h~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a 278 (539)
|+|+..|+.+++++|++. +..++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.||.+-+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred HHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence 888888888888888887 55688889999999999999999999999994 4999999999999987743
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=2.4e-23 Score=190.06 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=108.2
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCH----HHHHHHHhCCcccccccCCCCCcHHHHH
Q 040043 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHV----NVVKLMLNQSWLMEFEEDRDESTPLHVA 106 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A 106 (539)
+.++||.|++.|+.+.++.+++.+.+. ..+..|+||||+|+.+|+. +++++|+++|++++ ..+..|.||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHH
Confidence 457888888888888888888776433 2236788888888888864 47888888888777 5677788888888
Q ss_pred HHcCC------HHHHHHHHhcCCccccccCCCCC-hHHhHHHHcC-----CHHHHHHHHc-CCCccccccccCCCCHHHH
Q 040043 107 ISRGK------IDIVKEILKVRPSFCEQADKNRC-LPLHYASRIG-----NVEITKLLLN-SKPDMALQYNNNGYTPLHQ 173 (539)
Q Consensus 107 ~~~g~------~~~v~~LL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~ 173 (539)
+..|+ .++++.|++.+.++ +.+|..|+ ||||+|+..+ +.+++++|++ +|++++.. |..|.||||+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~-d~~G~TpL~~ 160 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-DKWGLTALEF 160 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC-CTTSCCHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc-CCCCCCHHHH
Confidence 87776 45677777766665 66666676 7777777633 2456666666 66666665 6667777777
Q ss_pred HHHcCCHHHHHHHHHh
Q 040043 174 AAINGHVKILEAFIAS 189 (539)
Q Consensus 174 Aa~~g~~~~v~~Ll~~ 189 (539)
|++.|+.++++.|.+.
T Consensus 161 A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 161 VKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHTTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 7777766666666543
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=1.5e-22 Score=175.02 Aligned_cols=128 Identities=21% Similarity=0.279 Sum_probs=86.3
Q ss_pred cccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCC-CChHH
Q 040043 59 TLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKN-RCLPL 137 (539)
Q Consensus 59 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~-g~tpL 137 (539)
+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|++.+.++ +..|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 4456667777777777777777777777766655 456666777777777 7777777777666665 555666 67777
Q ss_pred hHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhC
Q 040043 138 HYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASS 190 (539)
Q Consensus 138 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 190 (539)
|+|+..|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 7777777777777777766666654 666667777777666666666666554
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=5.1e-22 Score=168.52 Aligned_cols=126 Identities=37% Similarity=0.572 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043 30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 109 (539)
+|+||||.|++.|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHc
Confidence 4778888888888888888888877766 4567777788888888888888888777776665 4566777777777777
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCc
Q 040043 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPD 158 (539)
Q Consensus 110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 158 (539)
|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7777777777776665 56667777777777777777777777776653
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.7e-23 Score=190.84 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=120.5
Q ss_pred eecccCcHHHHHHHHHhCCh----------hhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHH
Q 040043 3 AATGFGHIELVTEIIKLCPQ----------LVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLA 72 (539)
Q Consensus 3 ~Aa~~g~~e~v~~Ll~~~~~----------~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 72 (539)
.|++.|..+.++++++.+.. .....+..|.||||.|++.|+.++++.|++ +.++ +..|..|.||||+|
T Consensus 6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A 83 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFV 83 (183)
T ss_dssp EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHH
T ss_pred HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHH
Confidence 56777777777777754211 112245678888888888888888888888 6655 56778888888888
Q ss_pred HHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHH
Q 040043 73 CRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLL 152 (539)
Q Consensus 73 ~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L 152 (539)
+..|+.+++++|++++.+++...+..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..++
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------- 155 (183)
T 3deo_A 84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------- 155 (183)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH-------
T ss_pred HHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc-------
Confidence 88888888888888887776433477888888888888888888888877766 6677778888888876321
Q ss_pred HcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043 153 LNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189 (539)
Q Consensus 153 l~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 189 (539)
...+.+||++|+..|+.++++.|.++
T Consensus 156 -----------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 23456777777777777777776543
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=5.6e-23 Score=187.65 Aligned_cols=152 Identities=12% Similarity=0.039 Sum_probs=70.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCH----HHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 66 QSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKI----DIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 66 ~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
.++|+.|++.|+.+.++.+++.+.... .+..|.||||+|+..|+. +++++|++.++++ +.+|..|+||||+|+
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF 83 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 345555555555555555555442211 123455555555555543 2555555555544 444555555555555
Q ss_pred HcCC------HHHHHHHHcCCCccccccccCCC-CHHHHHHHcCC-----HHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 040043 142 RIGN------VEITKLLLNSKPDMALQYNNNGY-TPLHQAAINGH-----VKILEAFIASSPTSFNCLTTDGDTVFHLAL 209 (539)
Q Consensus 142 ~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~Aa~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av 209 (539)
..++ .+++++|+++|++++.. |..|. ||||+|+..+. .++++.|++....+++..|..|+||||+|+
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 5544 34455555555555544 55555 55555554221 234444443122223344444444444444
Q ss_pred HhCChhHHHHHH
Q 040043 210 RFGKYNAFIFLA 221 (539)
Q Consensus 210 ~~~~~~~v~~Ll 221 (539)
+.++.+++++|.
T Consensus 163 ~~~~~~~v~~L~ 174 (186)
T 3t8k_A 163 RCQKPIALKMME 174 (186)
T ss_dssp TTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 444444444333
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=4.7e-22 Score=171.83 Aligned_cols=123 Identities=24% Similarity=0.321 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHc
Q 040043 30 KLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISR 109 (539)
Q Consensus 30 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~ 109 (539)
.|.||||+||..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHc
Confidence 4455566666666666666555555544 3445555555555555555555555555555444 3444555555555555
Q ss_pred CCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcC
Q 040043 110 GKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNS 155 (539)
Q Consensus 110 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 155 (539)
|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++.
T Consensus 91 ~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 91 GHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 5555555555554443 44455555555555555555555555543
No 90
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=5.8e-23 Score=196.30 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=73.4
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccC-CCCChHHhHHH
Q 040043 63 QERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD-KNRCLPLHYAS 141 (539)
Q Consensus 63 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~ 141 (539)
.+|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.++++.|++.++++ +..| ..|+||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence 344555555555555555555555 43333 34445555555555555555555555555544 2233 44555555555
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHH
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLA 221 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll 221 (539)
..|+.+++++|+++|++++.. |..|.||||+|+..++. ..+.||||+|+..|+.+++++|.
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~------------------~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHHTT------------------CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHHHhc------------------cCCCCHHHHHHHcChHHHHHHHH
Confidence 555555555555555555543 55555555555543221 23456666666666666666665
Q ss_pred hh
Q 040043 222 ES 223 (539)
Q Consensus 222 ~~ 223 (539)
+.
T Consensus 181 ~~ 182 (244)
T 3ui2_A 181 GQ 182 (244)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=1.7e-21 Score=168.40 Aligned_cols=126 Identities=26% Similarity=0.375 Sum_probs=93.0
Q ss_pred cccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043 61 LNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140 (539)
Q Consensus 61 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A 140 (539)
....+.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.++++.|++.+.++ +..|..|.||||+|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 87 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA 87 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 34556778888888888888888887777665 45677777777777777777777777776665 66677777777777
Q ss_pred HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHh
Q 040043 141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIAS 189 (539)
Q Consensus 141 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~ 189 (539)
+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 7777777777777777777665 77777777777777777777777654
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=4e-23 Score=197.44 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=107.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC
Q 040043 65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144 (539)
Q Consensus 65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g 144 (539)
+.+++.+++..|+.+.+..+...+.+ .+..|.||||.|+..|+.++++.|++ +.++ +..|..|+||||+|+..|
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g 88 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLG 88 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHT
T ss_pred CccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCC
Confidence 34444444555554444333333222 22356677777777777777777777 4444 666777777777777777
Q ss_pred CHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhc
Q 040043 145 NVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESF 224 (539)
Q Consensus 145 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~ 224 (539)
+.+++++|+++|++++...+..|.||||+|+..|+.++++.|++.+. +++..|..|+||||+|+..++.
T Consensus 89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~t~l~~A~~~~~~---------- 157 (244)
T 3ui2_A 89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREILKT---------- 157 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHHTT----------
T ss_pred CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHHHhc----------
Confidence 77777777777777766533667777777777777777777776653 3666777777777777754332
Q ss_pred ccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 225 DFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 225 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
..+.||||+|+..|+.+++++|++
T Consensus 158 ----------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 158 ----------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp ----------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 235677777777777777777764
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=4.2e-21 Score=162.84 Aligned_cols=125 Identities=37% Similarity=0.644 Sum_probs=90.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHc
Q 040043 64 ERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRI 143 (539)
Q Consensus 64 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~ 143 (539)
+|+||||.|+..|+.+++++|++++.+++ ..+..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 46777777777777777777777776655 45667777777777777777777777776665 56667777777777777
Q ss_pred CCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCC
Q 040043 144 GNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSP 191 (539)
Q Consensus 144 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 191 (539)
|+.+++++|+++|++++.. |..|.||||+|+..|+.++++.|++++.
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 7777777777777776654 6777777777777777777777776653
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=5.6e-23 Score=187.33 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=92.0
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccC-CCCChHHhHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQAD-KNRCLPLHYA 140 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A 140 (539)
+.+|.||||.|+..|+.++++.|++ +.+++ ..|..|.||||+|+..|+.++++.|++.++++ +..| ..|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 4566777777777777777777777 55554 45666777777777777777777777776665 3344 6677777777
Q ss_pred HHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHH
Q 040043 141 SRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFL 220 (539)
Q Consensus 141 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~L 220 (539)
+..|+.+++++|+++|++++.. |.+|.||||+|++.++. ..+.++|++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 7777777777777777766654 66777777777653321 2345666666666666666666
Q ss_pred Hh
Q 040043 221 AE 222 (539)
Q Consensus 221 l~ 222 (539)
.+
T Consensus 179 ~~ 180 (183)
T 3deo_A 179 EG 180 (183)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=9.6e-22 Score=170.04 Aligned_cols=128 Identities=25% Similarity=0.326 Sum_probs=91.8
Q ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 040043 26 AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV 105 (539)
Q Consensus 26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~ 105 (539)
.+|..|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHH
Confidence 46777888888888888888888888877766 5567777778888877777777777777777665 456667777777
Q ss_pred HHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCC
Q 040043 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSK 156 (539)
Q Consensus 106 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~ 156 (539)
|+..|+.++++.|++.+.++ +..|..|.||||+|+..+..+++++|.+.+
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 77777777777777776665 666777777777777776666666665544
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=2.4e-21 Score=167.55 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=80.9
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhH
Q 040043 60 LLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHY 139 (539)
Q Consensus 60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~ 139 (539)
.+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 356666777777777777777777776666555 45566666666666666666666666666554 5556666666666
Q ss_pred HHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHH
Q 040043 140 ASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFI 187 (539)
Q Consensus 140 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll 187 (539)
|+..|+.+++++|+++|++++.. |..|.||||+|+..+..++++.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCC-CTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhccHHHHHhhcc
Confidence 66666666666666666666554 666666666666666666655444
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=4.2e-21 Score=180.46 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=97.1
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCcH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQ-SWLMEFEEDRDESTP 102 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~g~t~ 102 (539)
+...+..|.||||+||..|+.++++.|++.+.++ +..|..|.||||+|+..|+.+++++|++. +.+++ ..|..|.||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tp 143 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTA 143 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCH
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCH
Confidence 4556677888888888888888888888887776 55677888888888888888888888887 66655 567778888
Q ss_pred HHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCcccc
Q 040043 103 LHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMAL 161 (539)
Q Consensus 103 Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 161 (539)
||+|+..|+.++++.|++.+.++ +..|..|.||||+|+..++.++++.|++.++....
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 88888888888888888877766 66777788888888887778888887777766554
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=187.31 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=120.6
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHhcCCccccccCCCC
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-----EDRDESTPLHVAISR---GKIDIVKEILKVRPSFCEQADKNR 133 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g 133 (539)
...+.++|+.|+..|+.+.++.|++.+.+++.. .+..|.||||+|+.. |+.+++++|++.++++ +..|..|
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G 226 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 226 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence 445668899999999999999999998887632 578899999999987 8999999999998887 7789999
Q ss_pred ChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCC
Q 040043 134 CLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGK 213 (539)
Q Consensus 134 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~ 213 (539)
+||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.+++ .|.||||+|+.+|+
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 99999999999999999999999999876 99999999999999999999999987754 58899999999886
Q ss_pred h
Q 040043 214 Y 214 (539)
Q Consensus 214 ~ 214 (539)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 4
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=1.4e-20 Score=159.41 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=53.1
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHH
Q 040043 29 EKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAIS 108 (539)
Q Consensus 29 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~ 108 (539)
..|+||||.|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHH
Confidence 34555555555555555555555555444 3344455555555555555555555555544443 334444444444444
Q ss_pred cCCHHHHHHHHhcCCccccccCCCCChHHhHH
Q 040043 109 RGKIDIVKEILKVRPSFCEQADKNRCLPLHYA 140 (539)
Q Consensus 109 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A 140 (539)
.|+.++++.|++.++++ +..|..|.||||+|
T Consensus 83 ~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT 113 (123)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence 44444444444444433 33444444444444
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=7.4e-21 Score=178.81 Aligned_cols=139 Identities=19% Similarity=0.176 Sum_probs=102.7
Q ss_pred ccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 040043 128 QADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHL 207 (539)
Q Consensus 128 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 207 (539)
..+..|.||||+|+..|+.++++.|++.|++++.. |..|.||||+|+..|+.++++.|++..+..++..|..|+||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 34667888888888888888888888888887765 88888888888888888888888887566678888888888888
Q ss_pred HHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhccccCccccccCC
Q 040043 208 ALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKKTKVDKNCRNYTN 271 (539)
Q Consensus 208 Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g 271 (539)
|+..|+.+++++|++. +..++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus 147 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp HHHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 8888888888888887 55678888888888888888888888888874 466666666544
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=2.4e-20 Score=158.00 Aligned_cols=114 Identities=23% Similarity=0.324 Sum_probs=75.1
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
+..|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 3456677777777777777777777666654 45666777777777777777777777666654 556666777777777
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcC
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAING 178 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 178 (539)
..|+.+++++|+++|++++.. |.+|.||||+|...+
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQA 117 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCCHH
T ss_pred HcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhCCHH
Confidence 777777777777776666654 666777777664333
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=183.35 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=122.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCccccc-----cCCCCChHHhHHHHc---CCHHHHHHHHcCCCccccccccCC
Q 040043 96 DRDESTPLHVAISRGKIDIVKEILKVRPSFCEQ-----ADKNRCLPLHYASRI---GNVEITKLLLNSKPDMALQYNNNG 167 (539)
Q Consensus 96 ~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g 167 (539)
.....++|+.|+..|+.+.++.|++.++++... .|..|+||||+|+.. |+.+++++|+++|++++.. |.+|
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G 226 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADG 226 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCC
Confidence 344567999999999999999999999887332 688999999999997 8999999999999999886 9999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHc
Q 040043 168 YTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILR 247 (539)
Q Consensus 168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~ 247 (539)
+||||+|+..|+.++++.|++.+. +++..|.+|+||||+|+..++.+++++|++.... .|+||||+|+..
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSW 296 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC-CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhc
Confidence 999999999999999999999864 4789999999999999999999999999997543 489999999998
Q ss_pred CCH
Q 040043 248 NNY 250 (539)
Q Consensus 248 ~~~ 250 (539)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 863
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=1.2e-18 Score=169.37 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=58.1
Q ss_pred hHHhHHHHcCCHHHHHHHHcCCCccccc-----cccCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043 135 LPLHYASRIGNVEITKLLLNSKPDMALQ-----YNNNGYTPLHQAAIN---GHVKILEAFIASSPTSFNCLTTDGDTVFH 206 (539)
Q Consensus 135 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 206 (539)
++|+.|+..|+.+.++.+++.|.+++.. .|..|.||||+|+.. |+.++++.|++.+.+ ++..|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence 4444455555555444444444443211 134445555555554 445555555544322 4444455555555
Q ss_pred HHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 207 ~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
+|+..|+.+++++|++. +.+++.+|.+|+||||+|+..++.+++++|++
T Consensus 211 ~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp HHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555443 33445555555555555555555555555553
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=2.1e-18 Score=167.72 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=89.8
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCc-----cccccCCCCcHHHHHHHh---CChhHHHHHHhhcccccccccccCCCCc
Q 040043 168 YTPLHQAAINGHVKILEAFIASSPTS-----FNCLTTDGDTVFHLALRF---GKYNAFIFLAESFDFTGLLHQQDQFGNT 239 (539)
Q Consensus 168 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~Av~~---~~~~~v~~Ll~~~~~~~~~~~~d~~G~T 239 (539)
.++|+.|+..|+.+.+..++..+.+. ++..|..|+||||+|+.. ++.+++++|++. +..+|.+|..|+|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~---ga~in~~d~~g~T 207 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCC
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC---CCCccccCCCCCC
Confidence 45777777777777777777766553 333466777777777777 677777777776 4557777777777
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCccccccCCCCHHHHHHHcCCchhhHHHhhhccCC
Q 040043 240 VLHLAILRNNYQLAEYIIKKTKVDKNCRNYTNQTALDVLKESGTKEAFSSELQSVEEP 297 (539)
Q Consensus 240 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~~~l~~~~~~ 297 (539)
|||+|+..|+.+++++|++ .|++++.+|..|+||||+|...|+.++++.+++.++..
T Consensus 208 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 7777777777777777774 47777777777777777777777777777777766553
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.75 E-value=4.8e-18 Score=136.11 Aligned_cols=91 Identities=35% Similarity=0.565 Sum_probs=58.6
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcC
Q 040043 31 LETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRG 110 (539)
Q Consensus 31 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 110 (539)
|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence 667777777777777777777766665 4456666666666666666666666666666555 45556666666666666
Q ss_pred CHHHHHHHHhcCC
Q 040043 111 KIDIVKEILKVRP 123 (539)
Q Consensus 111 ~~~~v~~LL~~~~ 123 (539)
+.+++++|++.++
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 6666666665543
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=3.7e-18 Score=171.99 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred CCCCChHHhHHHHc-CCHHHHHHHHcCCCccccccc--cCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043 130 DKNRCLPLHYASRI-GNVEITKLLLNSKPDMALQYN--NNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206 (539)
Q Consensus 130 d~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 206 (539)
+..+.|+||.|+.. |+.++++.|++.|++++.. + ..|.||||+|+..|+.++++.|++.+ .+++..|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence 34567899999999 9999999999999999876 6 88999999999999999999999886 458899999999999
Q ss_pred HHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcCCHHHHHHHhhc--cccCccccccCCCCHHHHHHHc
Q 040043 207 LALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRNNYQLAEYIIKK--TKVDKNCRNYTNQTALDVLKES 281 (539)
Q Consensus 207 ~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~--~~~~~~~~n~~g~t~l~~a~~~ 281 (539)
+|+..|+.+++++|++. +..++.+|.+|+||||+|+..++.+++++|++. ...+....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999987 667899999999999999999999999999854 2344456677888888887654
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.75 E-value=3.7e-18 Score=172.01 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=114.3
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHhcCCccccccC--CCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHH
Q 040043 98 DESTPLHVAISR-GKIDIVKEILKVRPSFCEQAD--KNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQA 174 (539)
Q Consensus 98 ~g~t~Lh~A~~~-g~~~~v~~LL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 174 (539)
.+.|+||.|+.. |+.++++.|++.+.++ +..+ ..|.||||+|+..|+.+++++|+++|++++.. |..|+||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence 345799999999 9999999999999887 5666 88999999999999999999999999999876 99999999999
Q ss_pred HHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhCChhHHHHHHhhcccccccccccCCCCcHHHHHHHcC
Q 040043 175 AINGHVKILEAFIASSPTSFNCLTTDGDTVFHLALRFGKYNAFIFLAESFDFTGLLHQQDQFGNTVLHLAILRN 248 (539)
Q Consensus 175 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~~v~~Ll~~~~~~~~~~~~d~~G~T~Lh~A~~~~ 248 (539)
+..|+.++++.|++.+. +++..|.+|.||||+|+..++.+++++|++...........+..+.|+++++....
T Consensus 276 ~~~g~~~~v~~LL~~Ga-d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 276 TILGHTGLACLFLKRGA-DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHcCcHHHHHHHHHCcC-CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 99999999999998864 47899999999999999999999999999876555555566778889998876543
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=1.7e-18 Score=182.78 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=117.3
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcCcccccc-----cccCCChHHHHHHH---cCCHHHHHHHHhCCcccccccCCC
Q 040043 27 VNEKLETPLHEACRQGNAEISALLLKTNLFVATL-----LNQERQSAFLLACR---RGHVNVVKLMLNQSWLMEFEEDRD 98 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~eiv~~Ll~~~~~~~~~~~~~ 98 (539)
+.....+.||.|+..|+.++++.|++.|+++... .+..|.||||+||. .|+.+++++|+++|++++ ..|..
T Consensus 128 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~~ 206 (497)
T 3lvq_E 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAAD 206 (497)
T ss_dssp CCC-CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCSS
T ss_pred cccccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCCC
Confidence 3344458899999999999999999999887422 27899999999977 899999999999999887 67899
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHH
Q 040043 99 ESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAI 176 (539)
Q Consensus 99 g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~ 176 (539)
|.||||+|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 207 g~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~~~~ 276 (497)
T 3lvq_E 207 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHVDYS 276 (497)
T ss_dssp SCCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Ccceeecc
Confidence 999999999999999999999999987 88899999999999999999999999999999875 57776654
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=4e-18 Score=179.88 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=116.4
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHhCCcccccc-----cCCCCCcHHHHHHH---cCCHHHHHHHHhcCCccccccCCCCC
Q 040043 63 QERQSAFLLACRRGHVNVVKLMLNQSWLMEFE-----EDRDESTPLHVAIS---RGKIDIVKEILKVRPSFCEQADKNRC 134 (539)
Q Consensus 63 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~---~g~~~~v~~LL~~~~~~~~~~d~~g~ 134 (539)
....+.||.|+..|+.++++.|++.|.+++.. .+..|.||||+|+. .|+.++++.|++.++++ +..|..|+
T Consensus 130 ~~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp C-CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 34458999999999999999999999887632 37789999999976 89999999999999887 88899999
Q ss_pred hHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHH
Q 040043 135 LPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVF 205 (539)
Q Consensus 135 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 205 (539)
||||+|+..|+.+++++|+++|++++.. |.+|.||||+|+..|+.++++.|++.+.+ ++..+....++.
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-~~~~~~h~~~~~ 277 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQAQAG-TFAFPLHVDYSW 277 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCC-CTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCC-CCCCcceeeccc
Confidence 9999999999999999999999999887 99999999999999999999999998865 444433333333
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.75 E-value=7.8e-18 Score=134.88 Aligned_cols=91 Identities=37% Similarity=0.625 Sum_probs=51.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHHHcC
Q 040043 65 RQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYASRIG 144 (539)
Q Consensus 65 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g 144 (539)
|+||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 5556666666666666666665555544 34555555555555555555555555555554 445555555555555555
Q ss_pred CHHHHHHHHcCCC
Q 040043 145 NVEITKLLLNSKP 157 (539)
Q Consensus 145 ~~~~v~~Ll~~~~ 157 (539)
+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 5555555555554
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=8.5e-18 Score=140.33 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=49.0
Q ss_pred ccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCccccccCCCCChHHhHHH
Q 040043 62 NQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILKVRPSFCEQADKNRCLPLHYAS 141 (539)
Q Consensus 62 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~ 141 (539)
|.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK 83 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 3344444444444444444444444443333 23344444444444444444444444444443 344555555555555
Q ss_pred HcCCHHHHHHHHcCCCccccccccCCCCH
Q 040043 142 RIGNVEITKLLLNSKPDMALQYNNNGYTP 170 (539)
Q Consensus 142 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 170 (539)
..|+.+++++|+++|++++.. +..|.+|
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~-~~~~~~~ 111 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNAR-SWGSSHH 111 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHH-SCCCC--
T ss_pred HCCCHHHHHHHHHcCCCCCcC-Ccccccc
Confidence 555555555555555555544 4444444
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=1.3e-17 Score=139.19 Aligned_cols=108 Identities=26% Similarity=0.336 Sum_probs=78.3
Q ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHHHH
Q 040043 26 AVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPLHV 105 (539)
Q Consensus 26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~Lh~ 105 (539)
.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence 45677777777777777777777777777665 5567777777777777777777777777777665 456677777777
Q ss_pred HHHcCCHHHHHHHHhcCCccccccCCCCChH
Q 040043 106 AISRGKIDIVKEILKVRPSFCEQADKNRCLP 136 (539)
Q Consensus 106 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp 136 (539)
|+..|+.++++.|++.++++ +..+..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 77777777777777777766 6666666665
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.61 E-value=1.3e-15 Score=126.09 Aligned_cols=93 Identities=25% Similarity=0.385 Sum_probs=56.7
Q ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCcHH
Q 040043 24 VAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVNVVKLMLNQSWLMEFEEDRDESTPL 103 (539)
Q Consensus 24 l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~g~t~L 103 (539)
....|.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHH
Confidence 4455666667777777777777777777666655 4456666666666666666666666666665554 4555666666
Q ss_pred HHHHHcCCHHHHHHH
Q 040043 104 HVAISRGKIDIVKEI 118 (539)
Q Consensus 104 h~A~~~g~~~~v~~L 118 (539)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 666666666666544
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.58 E-value=4.9e-15 Score=122.48 Aligned_cols=92 Identities=25% Similarity=0.410 Sum_probs=48.2
Q ss_pred cccCCCCChHHhHHHHcCCHHHHHHHHcCCCccccccccCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 040043 127 EQADKNRCLPLHYASRIGNVEITKLLLNSKPDMALQYNNNGYTPLHQAAINGHVKILEAFIASSPTSFNCLTTDGDTVFH 206 (539)
Q Consensus 127 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 206 (539)
...|.+|.||||+|+..|+.+++++|++.|++++.. |..|.||||+|+..|+.++++.|++.+. +++..|..|+||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccccCCCcHHH
Confidence 334555556666666666666666666555555544 5555555555555555555555555432 24444555555555
Q ss_pred HHHHhCChhHHHHH
Q 040043 207 LALRFGKYNAFIFL 220 (539)
Q Consensus 207 ~Av~~~~~~~v~~L 220 (539)
+|+..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 55555555554443
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=67.06 E-value=4.1 Score=39.75 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=18.0
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHhh
Q 040043 232 QQDQFGNTVLHLAILRNNYQLAEYIIK 258 (539)
Q Consensus 232 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 258 (539)
..|.+||-.+......+..+..+.+++
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHH
Confidence 457777777777777776665555553
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=63.18 E-value=23 Score=34.10 Aligned_cols=20 Identities=20% Similarity=0.188 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhee
Q 040043 426 LMWVSISFMATAYIAASRIT 445 (539)
Q Consensus 426 ~l~~~~~~m~~af~~~~~~~ 445 (539)
+..+++.++..+|++|+|=+
T Consensus 282 LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 45568888999999999944
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=57.75 E-value=14 Score=35.97 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=12.1
Q ss_pred cccCCCCHHHHHHHcCCHHHHHHHH
Q 040043 27 VNEKLETPLHEACRQGNAEISALLL 51 (539)
Q Consensus 27 ~n~~g~TpLh~Aa~~g~~~iv~~Ll 51 (539)
.|..|+..+.-....|+.+....++
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~ 93 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALA 93 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHH
Confidence 4445555555555555544444433
No 118
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=53.71 E-value=23 Score=34.60 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhee
Q 040043 426 LMWVSISFMATAYIAASRIT 445 (539)
Q Consensus 426 ~l~~~~~~m~~af~~~~~~~ 445 (539)
+..+++.+|..+|++|+|=+
T Consensus 306 LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 45568888999999999954
No 119
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.43 E-value=33 Score=25.14 Aligned_cols=33 Identities=21% Similarity=-0.001 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040043 455 VADSLLAVGAGTLGSLFVYLGVALTRHWLRKLK 487 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (539)
+.+++-++++.+++.+++++.++++..+-.+..
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445455566556666666666666655543333
No 120
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=38.74 E-value=51 Score=32.04 Aligned_cols=60 Identities=8% Similarity=-0.113 Sum_probs=29.3
Q ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhc--CcccccccccCCChHHHHHHHcCCHHHHHHHH
Q 040043 26 AVNEKLETPLHEACRQGNAEISALLLKT--NLFVATLLNQERQSAFLLACRRGHVNVVKLML 85 (539)
Q Consensus 26 ~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll 85 (539)
+.|..|+..+.-....|..+..+.+++. |....-..+..|.-.+..+......+-...++
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii 134 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELV 134 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHH
Confidence 4566677777666666666555554442 11111123444544555555544444333333
No 121
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.98 E-value=47 Score=22.30 Aligned_cols=26 Identities=15% Similarity=-0.058 Sum_probs=14.2
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHH
Q 040043 450 RGTGWVADSLLAVGAGTLGSLFVYLG 475 (539)
Q Consensus 450 ~~~~w~~~~~~~~~~~~~~~~~~~~~ 475 (539)
....|+.+.+.++++.++..+++++.
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777666666544444444333
No 122
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.58 E-value=1.1e+02 Score=20.40 Aligned_cols=23 Identities=17% Similarity=-0.068 Sum_probs=12.0
Q ss_pred chHHHHHHHHHhhHHHHHHHHHH
Q 040043 452 TGWVADSLLAVGAGTLGSLFVYL 474 (539)
Q Consensus 452 ~~w~~~~~~~~~~~~~~~~~~~~ 474 (539)
..|+.+.+.++++.++..+++++
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~ 29 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILA 29 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666654444444433
No 123
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=26.54 E-value=1.2e+02 Score=19.05 Aligned_cols=23 Identities=13% Similarity=-0.065 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHhhHHHHHHHHH
Q 040043 451 GTGWVADSLLAVGAGTLGSLFVY 473 (539)
Q Consensus 451 ~~~w~~~~~~~~~~~~~~~~~~~ 473 (539)
...|+.+.+.++++..+..++.+
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~ 29 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVL 29 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665444444443
No 124
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.92 E-value=2.1e+02 Score=24.40 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred ecccCcHHHHHHHHHhCChhhhccccCCCCHHHHHHHcCCHHHHHHHHhcCcccccccccCCChHHHHHHHcCCHH-HHH
Q 040043 4 ATGFGHIELVTEIIKLCPQLVAAVNEKLETPLHEACRQGNAEISALLLKTNLFVATLLNQERQSAFLLACRRGHVN-VVK 82 (539)
Q Consensus 4 Aa~~g~~e~v~~Ll~~~~~~l~~~n~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~e-iv~ 82 (539)
|...|+.++++.......+. ...+......|+.+-++.|.+. .....+-..+++.+...|+.+ +++
T Consensus 44 AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~kla~i-----A~~~g~~n~af~~~l~lGdv~~~i~ 110 (177)
T 3mkq_B 44 ALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSKMQNI-----AQTREDFGSMLLNTFYNNSTKERSS 110 (177)
T ss_dssp HHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHHHHHH-----HHHCccHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHhCCcccccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040043 83 LMLNQSWLMEFEEDRDESTPLHVAISRGKIDIVKEILK 120 (539)
Q Consensus 83 ~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~ 120 (539)
.|.+.+.... +...|-.+|..+.++.+++
T Consensus 111 lL~~~~r~~e---------A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 111 IFAEGGSLPL---------AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHTTCHHH---------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCChHH---------HHHHHHHcCcHHHHHHHHH
No 125
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=24.90 E-value=61 Score=31.48 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=45.0
Q ss_pred ccccCCChHHHHHHHcCCHHHHHHHHhC--CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCcc-ccccCCCCCh
Q 040043 60 LLNQERQSAFLLACRRGHVNVVKLMLNQ--SWLMEFEEDRDESTPLHVAISRGKIDIVKEILKV-RPSF-CEQADKNRCL 135 (539)
Q Consensus 60 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~LL~~-~~~~-~~~~d~~g~t 135 (539)
..|..|...+.-....+..+....+++. +.......+..|.-.+..+......+-...+++. .+.. .-..|..|+.
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ 152 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 152 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 4577777777777777777666655543 2222223455566566666655554443344432 1111 1124566655
Q ss_pred HHhHHHHcCC
Q 040043 136 PLHYASRIGN 145 (539)
Q Consensus 136 pLh~A~~~g~ 145 (539)
.+......+.
T Consensus 153 ViQ~~l~~~~ 162 (369)
T 3k49_A 153 VIQKAIETIP 162 (369)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhCC
Confidence 5555554443
Done!