Query 040046
Match_columns 221
No_of_seqs 240 out of 1690
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.1E-39 3.8E-44 230.1 0.9 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 6.1E-39 2.1E-43 231.8 0.5 73 2-76 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.6E-37 5.5E-42 228.0 -0.3 78 1-83 16-93 (100)
4 1hbx_A SRF, serum response fac 100.0 3.2E-37 1.1E-41 223.6 -1.4 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.4E-36 4.9E-41 224.3 -1.0 69 1-71 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 79.6 13 0.00043 25.6 8.7 43 116-163 3-45 (81)
7 1dip_A Delta-sleep-inducing pe 75.2 4.6 0.00016 27.2 4.4 27 141-167 18-44 (78)
8 3s9g_A Protein hexim1; cyclin 73.9 12 0.0004 26.7 6.5 25 144-168 64-88 (104)
9 1a93_B MAX protein, coiled coi 69.2 7.7 0.00026 22.2 3.8 26 137-162 6-31 (34)
10 3nmd_A CGMP dependent protein 68.1 24 0.00083 23.6 7.5 50 112-168 14-63 (72)
11 1dh3_A Transcription factor CR 64.8 22 0.00076 22.3 5.9 32 133-168 14-45 (55)
12 2oa5_A Hypothetical protein BQ 63.8 29 0.001 25.1 6.9 58 82-139 8-67 (110)
13 2l16_A SEC-independent protein 63.5 0.75 2.6E-05 31.6 -1.5 29 43-75 16-44 (78)
14 2w6a_A ARF GTPase-activating p 63.3 27 0.00093 22.5 8.5 52 115-166 9-62 (63)
15 2dgc_A Protein (GCN4); basic d 62.8 24 0.00081 22.8 5.9 34 131-168 20-53 (63)
16 1ytz_T Troponin T; muscle, THI 60.0 41 0.0014 24.2 7.3 33 111-143 37-69 (107)
17 1j1d_B Troponin T, TNT; THIN f 59.5 38 0.0013 24.4 7.0 32 112-143 38-69 (106)
18 3ghg_A Fibrinogen alpha chain; 57.2 1.2E+02 0.0041 27.9 12.4 12 63-74 50-61 (562)
19 2wt7_A Proto-oncogene protein 56.6 35 0.0012 21.9 5.9 33 132-168 14-46 (63)
20 1t2k_D Cyclic-AMP-dependent tr 56.3 35 0.0012 21.6 5.9 33 132-168 13-45 (61)
21 1jnm_A Proto-oncogene C-JUN; B 56.2 36 0.0012 21.7 5.9 34 131-168 12-45 (62)
22 3na7_A HP0958; flagellar bioge 55.6 66 0.0023 26.2 8.9 42 117-158 88-131 (256)
23 2yy0_A C-MYC-binding protein; 55.5 27 0.00091 21.9 4.9 27 142-168 23-49 (53)
24 1m1j_B Fibrinogen beta chain; 55.0 1.2E+02 0.0042 27.4 13.5 45 26-75 54-98 (464)
25 1j1e_C Troponin I, TNI; THIN f 51.5 87 0.003 24.6 9.3 33 111-143 53-85 (180)
26 2dfs_A Myosin-5A; myosin-V, in 50.3 1.4E+02 0.0049 29.8 11.8 21 148-168 1019-1039(1080)
27 1go4_E MAD1 (mitotic arrest de 49.8 8 0.00027 27.7 2.0 20 140-159 77-96 (100)
28 2l5g_B Putative uncharacterize 49.3 40 0.0014 20.1 5.3 38 115-160 1-38 (42)
29 2rpa_A Katanin P60 ATPase-cont 48.8 6.2 0.00021 27.0 1.2 35 29-76 16-50 (78)
30 2dfs_A Myosin-5A; myosin-V, in 48.7 2E+02 0.0069 28.7 12.5 16 22-37 920-935 (1080)
31 4gfh_A DNA topoisomerase 2; to 48.7 2.2E+02 0.0075 28.8 12.8 43 26-74 958-1000(1177)
32 2oqq_A Transcription factor HY 46.6 44 0.0015 19.9 5.4 26 143-168 15-40 (42)
33 3a7p_A Autophagy protein 16; c 44.5 1E+02 0.0035 23.5 12.1 46 123-168 86-133 (152)
34 1g6u_A Domain swapped dimer; d 44.2 48 0.0016 19.5 4.6 20 114-133 15-34 (48)
35 1j1d_C Troponin I, TNI; THIN f 42.0 1.1E+02 0.0036 22.9 10.2 34 110-143 52-85 (133)
36 3oja_A Leucine-rich immune mol 41.8 1.8E+02 0.0062 25.5 11.8 37 128-168 422-458 (487)
37 2qez_A Ethanolamine ammonia-ly 41.2 9.8 0.00033 34.0 1.5 15 198-212 154-168 (455)
38 3abq_A Ethanolamine ammonia-ly 39.9 9.8 0.00034 34.0 1.3 15 198-212 153-167 (453)
39 3twe_A Alpha4H; unknown functi 39.7 41 0.0014 17.5 3.4 16 90-105 9-24 (27)
40 1m1j_C Fibrinogen gamma chain; 38.5 2.1E+02 0.0071 25.3 14.0 60 50-111 11-70 (409)
41 1a0r_P Phosducin, MEKA, PP33; 38.4 36 0.0012 27.8 4.6 36 111-146 67-104 (245)
42 1deq_A Fibrinogen (alpha chain 37.3 2.1E+02 0.0073 25.1 12.3 61 28-98 23-83 (390)
43 3nrf_A APAG protein; structura 36.9 9 0.00031 27.7 0.5 42 11-57 21-62 (106)
44 3gp4_A Transcriptional regulat 36.8 1.3E+02 0.0043 22.3 7.7 53 115-168 59-111 (142)
45 2zvv_Y Cyclin-dependent kinase 36.7 8.2 0.00028 20.3 0.2 12 15-26 15-26 (26)
46 2l5g_A GPS2 protein, G protein 36.5 49 0.0017 19.2 3.5 17 145-161 15-31 (38)
47 3qx3_A DNA topoisomerase 2-bet 36.0 3.1E+02 0.011 26.5 13.1 26 45-74 598-623 (803)
48 3oja_B Anopheles plasmodium-re 35.4 2.3E+02 0.0078 25.4 10.0 8 90-97 464-471 (597)
49 3hnw_A Uncharacterized protein 35.3 1.4E+02 0.0047 22.3 8.4 10 52-61 16-25 (138)
50 1deb_A APC protein, adenomatou 34.1 45 0.0015 20.7 3.3 24 83-106 4-27 (54)
51 1ci6_A Transcription factor AT 33.2 95 0.0032 19.8 5.9 32 133-168 15-46 (63)
52 1m2d_A [2Fe-2S] ferredoxin; th 31.9 25 0.00085 24.9 2.2 33 39-73 59-91 (110)
53 2jo8_A Serine/threonine-protei 30.5 54 0.0018 20.4 3.3 17 113-129 7-23 (51)
54 1x4t_A Hypothetical protein LO 29.1 1.5E+02 0.005 20.7 6.6 36 79-114 49-84 (92)
55 1kaf_A Transcription regulator 28.7 15 0.00051 26.6 0.5 52 6-74 23-75 (108)
56 2wvr_A Geminin; DNA replicatio 28.3 77 0.0026 25.4 4.7 38 65-102 100-142 (209)
57 3oa7_A Head morphogenesis prot 26.6 1.1E+02 0.0036 24.6 5.1 42 82-123 44-85 (206)
58 1go4_E MAD1 (mitotic arrest de 26.5 86 0.003 22.2 4.2 24 145-168 12-35 (100)
59 1t2k_D Cyclic-AMP-dependent tr 26.3 1.2E+02 0.0042 18.9 5.4 27 142-168 33-59 (61)
60 1gd2_E Transcription factor PA 25.9 1.4E+02 0.0049 19.5 5.9 14 130-143 18-31 (70)
61 3gpv_A Transcriptional regulat 24.7 2.1E+02 0.0072 21.1 7.7 53 115-168 73-125 (148)
62 3qks_A DNA double-strand break 24.2 84 0.0029 24.3 4.3 35 72-106 158-192 (203)
63 2ky6_A Mediator of RNA polymer 23.9 73 0.0025 24.7 3.7 37 36-73 116-159 (166)
64 3q4f_C DNA repair protein XRCC 23.9 1.8E+02 0.0061 22.9 5.9 24 145-168 161-184 (186)
65 3mq9_A Bone marrow stromal ant 23.7 3.6E+02 0.012 23.4 11.7 19 140-158 445-463 (471)
66 1a92_A Delta antigen; leucine 23.4 91 0.0031 19.1 3.3 22 141-162 17-38 (50)
67 1t6f_A Geminin; coiled-coil, c 23.3 81 0.0028 18.1 2.8 18 85-102 17-34 (37)
68 3oja_B Anopheles plasmodium-re 22.8 4.1E+02 0.014 23.7 13.1 13 89-101 456-468 (597)
69 1zps_A PRA-CH, phosphoribosyl- 22.4 29 0.00098 26.2 1.1 37 17-53 54-100 (138)
70 3a4r_A Nfatc2-interacting prot 21.7 1.1E+02 0.0037 20.1 3.9 38 41-78 6-45 (79)
71 3gx8_A Monothiol glutaredoxin- 20.9 55 0.0019 23.4 2.4 29 44-72 17-45 (121)
72 1q08_A Zn(II)-responsive regul 20.8 1.9E+02 0.0067 19.2 7.4 53 115-168 16-69 (99)
73 3thf_A Protein shroom; coiled- 20.7 1.4E+02 0.005 23.5 4.9 33 132-168 10-42 (190)
74 1fo5_A Thioredoxin; disulfide 20.2 85 0.0029 19.5 3.1 26 43-73 4-29 (85)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.1e-39 Score=230.06 Aligned_cols=73 Identities=45% Similarity=0.715 Sum_probs=69.1
Q ss_pred CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046 2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK 76 (221)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (221)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+||+ |++||+||++.+.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999999999874 8999999998753
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=6.1e-39 Score=231.77 Aligned_cols=73 Identities=45% Similarity=0.712 Sum_probs=70.4
Q ss_pred CcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046 2 ARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK 76 (221)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (221)
||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+|| +|.+||+||++.+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999997 48999999998764
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.6e-37 Score=228.01 Aligned_cols=78 Identities=38% Similarity=0.546 Sum_probs=71.5
Q ss_pred CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhccccc
Q 040046 1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLW 80 (221)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~ 80 (221)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+ +..|+++|. |.++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~---G~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQE---GRNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHH---HHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhh---CCcHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 679988775 44566
Q ss_pred chh
Q 040046 81 SSQ 83 (221)
Q Consensus 81 ~~~ 83 (221)
+..
T Consensus 91 ~~c 93 (100)
T 1mnm_A 91 QAC 93 (100)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.2e-37 Score=223.61 Aligned_cols=70 Identities=33% Similarity=0.523 Sum_probs=67.2
Q ss_pred CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHH
Q 040046 1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQ 72 (221)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~ 72 (221)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999985 789998664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.4e-36 Score=224.31 Aligned_cols=69 Identities=33% Similarity=0.530 Sum_probs=66.4
Q ss_pred CCcccceeEEecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHH
Q 040046 1 MARGKIQIKRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEY 71 (221)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY 71 (221)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|++|+ |..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999985 78899864
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.60 E-value=13 Score=25.63 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 116 LSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRK 163 (221)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~ 163 (221)
+|++=|..||..+..++..|- ++.-+++.||.|...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999774 5555667777776665555544
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=75.20 E-value=4.6 Score=27.25 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 141 RAISGQIVTHRKKVRREEEENRKLRNG 167 (221)
Q Consensus 141 ~~l~~qi~~lkkK~~~l~e~n~~L~~~ 167 (221)
++|.++|..|..|...|+.||..|+.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888889999999999998777653
No 8
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.94 E-value=12 Score=26.69 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 144 SGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 144 ~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
..+|..|..++..|..+|..|+.+-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888998888876
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=69.19 E-value=7.7 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 137 ERKLRAISGQIVTHRKKVRREEEENR 162 (221)
Q Consensus 137 ~rK~~~l~~qi~~lkkK~~~l~e~n~ 162 (221)
.||+.-....|+.++++...|+++-+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 47888899999999999888887643
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.14 E-value=24 Score=23.63 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 112 SLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 112 ~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
.+++++. +.+|+..|......||.+-.. |..+.+.....+++.+.|..++
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 888888888888888876543 4677777777777777787766
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=64.79 E-value=22 Score=22.30 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 133 RIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 133 ~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
..-|.||-..+ +.|..++..|+.+|..|..++
T Consensus 14 ~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 14 RESRRKKKEYV----KSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34466665444 788999999999999999887
No 12
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=63.78 E-value=29 Score=25.12 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=35.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040046 82 SQYEKMQENLKNLKEVNINLKKEIRQR--LGESLNDLSLKKLSDLEQDVDNCLRIIRERK 139 (221)
Q Consensus 82 ~~~e~lq~el~kLk~en~~L~~~ir~~--~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~rK 139 (221)
..+|.|..+|.+|+-||..|++.++.- -+.+=.-|+..+=..+-...-.+|...=.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999988652 1123345777776665555554444443333
No 13
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=63.47 E-value=0.75 Score=31.64 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=22.7
Q ss_pred eeeeeecCCCccccccccchhhHHHHHHHHhhh
Q 040046 43 VSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRL 75 (221)
Q Consensus 43 v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~ 75 (221)
|+||||+| +|+.+.+. ++-+.+..|++..
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHH
Confidence 78999999 89988776 4667777777764
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=63.26 E-value=27 Score=22.46 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 115 DLSLKKLSDLEQDVDNCLRIIRE--RKLRAISGQIVTHRKKVRREEEENRKLRN 166 (221)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~VR~--rK~~~l~~qi~~lkkK~~~l~e~n~~L~~ 166 (221)
..+++|..++...|-.+=.+|.. +-+.-+.+++..+++++..|+.+|..|+.
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 46788888887777666555442 22334557778889999999999988863
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.80 E-value=24 Score=22.83 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 131 CLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 131 ~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+-.+.|.||.+-+ +.|..++..|+.+|..|..++
T Consensus 20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455667776555 688999999999999998877
No 16
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=60.02 E-value=41 Score=24.18 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 111 ESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAI 143 (221)
Q Consensus 111 e~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l 143 (221)
-+|++||.++|+.+=..|-..+..+-+-|+.+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 478999999999999999999999988888765
No 17
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=59.49 E-value=38 Score=24.36 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 112 SLNDLSLKKLSDLEQDVDNCLRIIRERKLRAI 143 (221)
Q Consensus 112 ~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l 143 (221)
+|++||.++|+.+-..|-..+..+-+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 79999999999999999999999998888765
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.15 E-value=1.2e+02 Score=27.93 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=8.9
Q ss_pred hhHHHHHHHHhh
Q 040046 63 TTKQLLDEYQRR 74 (221)
Q Consensus 63 ~~~~ii~RY~~~ 74 (221)
.|+.+|++..+-
T Consensus 50 rLQglLdkqErD 61 (562)
T 3ghg_A 50 RMKGLIDEVNQD 61 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhhHHhhcCc
Confidence 688888887654
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.60 E-value=35 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 132 LRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 132 L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
-.+.|.||-+.+ +.|..++..|+.+|..|..++
T Consensus 14 A~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 14 AAKCRNRRRELT----DTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345566776555 688888888888888888876
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.33 E-value=35 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 132 LRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 132 L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
-...|.||.+.+ +.|..++..|+.+|..|..++
T Consensus 13 A~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 13 ASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554 678888888888888887776
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=56.23 E-value=36 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 131 CLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 131 ~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+-...|.||-+.+ +.|..++..|+.+|..|..++
T Consensus 12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445667776655 688899999999999988877
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.60 E-value=66 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 040046 117 SLKKLSDLEQDVDNCLRIIRERKLRAI--SGQIVTHRKKVRREE 158 (221)
Q Consensus 117 s~~EL~~LE~~Le~~L~~VR~rK~~~l--~~qi~~lkkK~~~l~ 158 (221)
+.+|+..|...++..-..+...-.+++ +++++.++.....++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888876666555444433 344444444333333
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.50 E-value=27 Score=21.85 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 142 AISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 142 ~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
.|..++..|+.|+..|.+++..|..++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788888888888888887766
No 24
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.98 E-value=1.2e+02 Score=27.36 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=23.9
Q ss_pred cccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhh
Q 040046 26 NGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRL 75 (221)
Q Consensus 26 ~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~ 75 (221)
.|+-||.-|.. -||.-|.+ +++.+-.||.....+.+.+-+|+..-
T Consensus 54 ~~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~V 98 (464)
T 1m1j_B 54 KQAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKTV 98 (464)
T ss_dssp ---------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHHH
T ss_pred chhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhhh
Confidence 36677777766 77777765 44555567754446778888887753
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=51.49 E-value=87 Score=24.63 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 111 ESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAI 143 (221)
Q Consensus 111 e~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l 143 (221)
-+|++||.++|+.+=..|-..+..+-+-|+.+-
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 488999999999999999999999999988765
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.31 E-value=1.4e+02 Score=29.76 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040046 148 VTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 148 ~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+.|+.|+..|+++|..|..++
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777665
No 27
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.82 E-value=8 Score=27.69 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040046 140 LRAISGQIVTHRKKVRREEE 159 (221)
Q Consensus 140 ~~~l~~qi~~lkkK~~~l~e 159 (221)
.+.|..+++.|+.+++.+++
T Consensus 77 ~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 77 HSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34677777777777776655
No 28
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.30 E-value=40 Score=20.10 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 115 DLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEE 160 (221)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~ 160 (221)
++|-+||.+=-+.++.-+..++ ++|..+++|.+.|++.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEEE 38 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Confidence 3556666665555555444443 4566788888888764
No 29
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.84 E-value=6.2 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=27.2
Q ss_pred chhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhc
Q 040046 29 FKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLK 76 (221)
Q Consensus 29 ~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (221)
+|+|+|.+.+++=|.|++.|.. +.+-|+||-....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-------------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-------------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-------------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHhcC
Confidence 5899999999998888765543 5677888877654
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.68 E-value=2e+02 Score=28.72 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=0.0
Q ss_pred cccccccchhhhhhhc
Q 040046 22 SKRRNGLFKKAQELTV 37 (221)
Q Consensus 22 sKRr~GL~KKA~ELSv 37 (221)
.+...+|-+|..||..
T Consensus 920 ~~~~~~LE~kl~eLq~ 935 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQR 935 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555544
No 31
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=48.66 E-value=2.2e+02 Score=28.81 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=28.0
Q ss_pred cccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhh
Q 040046 26 NGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRR 74 (221)
Q Consensus 26 ~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~ 74 (221)
+||+|+-. |.+-.++ ..+++|.+.|++..|.+ +++||+-|-..
T Consensus 958 ~~L~k~t~-L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERFK-LISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHTT-CEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred HhHHHhcc-Ccceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 45655543 4333222 25789999999988876 46888877554
No 32
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.62 E-value=44 Score=19.86 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 143 ISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 143 l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+......|..|+.-|+.||..|++-+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44555678888888888888887754
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.51 E-value=1e+02 Score=23.51 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 040046 123 DLEQDVDNCLRIIRERKLRAISG--QIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 123 ~LE~~Le~~L~~VR~rK~~~l~~--qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+|+..|...-+.+-.-+++++.- |.+.+..|.+.++++|..|...+
T Consensus 86 dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 86 RLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 33567889999999999998877
No 34
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=44.19 E-value=48 Score=19.54 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 040046 114 NDLSLKKLSDLEQDVDNCLR 133 (221)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~L~ 133 (221)
++.|.+||..||..|..--+
T Consensus 15 egfspeelaaleselqalek 34 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEK 34 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 46899999999988765433
No 35
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=42.01 E-value=1.1e+02 Score=22.90 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 110 GESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAI 143 (221)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l 143 (221)
.-+|++||.++|+.+=..|-..+..+-+-|+.+-
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3479999999999999999999999999888765
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.79 E-value=1.8e+02 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 128 VDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 128 Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
+...+...|.+..+. .+..+..+..+.+++.++...+
T Consensus 422 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 422 MYVEQQSVQNNAIRD----WDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhh----hhhhhhHHHHHHHHhhhhhhhh
Confidence 444444555553333 3455666666666666666654
No 37
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=41.25 E-value=9.8 Score=34.01 Aligned_cols=15 Identities=60% Similarity=1.012 Sum_probs=12.0
Q ss_pred CCcccccccCCCCCC
Q 040046 198 GPGIFALRLQPNEPL 212 (221)
Q Consensus 198 ~~~~~~frlqp~qpn 212 (221)
.+.-++.|||||||-
T Consensus 154 l~G~ls~RlQPNhPT 168 (455)
T 2qez_A 154 LPGTFSARLQPNHPT 168 (455)
T ss_dssp CTTBCBCEECCCCTT
T ss_pred CCCceecccCCCCCC
Confidence 344789999999993
No 38
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=39.93 E-value=9.8 Score=34.02 Aligned_cols=15 Identities=53% Similarity=0.875 Sum_probs=12.0
Q ss_pred CCcccccccCCCCCC
Q 040046 198 GPGIFALRLQPNEPL 212 (221)
Q Consensus 198 ~~~~~~frlqp~qpn 212 (221)
.+.-++.|||||||-
T Consensus 153 l~G~ls~RlQPNhPT 167 (453)
T 3abq_A 153 IPGTFSARLQPNDTR 167 (453)
T ss_dssp CTTBCEEEECCCCTT
T ss_pred CCCceecccCCCCCC
Confidence 344789999999993
No 39
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.68 E-value=41 Score=17.51 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 040046 90 NLKNLKEVNINLKKEI 105 (221)
Q Consensus 90 el~kLk~en~~L~~~i 105 (221)
+++.|++...+|++.+
T Consensus 9 eledlqerlrklrkkl 24 (27)
T 3twe_A 9 ELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444444444
No 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.55 E-value=2.1e+02 Score=25.32 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=38.7
Q ss_pred CCCccccccccchhhHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 040046 50 STGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGE 111 (221)
Q Consensus 50 ~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~en~~L~~~ir~~~Ge 111 (221)
++..+-.||.-...+.+.+.+|++.-..++ ..++.+..++..+..+...|.+.|...+.+
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l--~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGEL--LEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445555677654589999999998543322 233555566777777777777777655544
No 41
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=38.40 E-value=36 Score=27.79 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=25.4
Q ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 040046 111 ESLNDLSLKKLSDLEQ--DVDNCLRIIRERKLRAISGQ 146 (221)
Q Consensus 111 e~L~~Ls~~EL~~LE~--~Le~~L~~VR~rK~~~l~~q 146 (221)
..+..++++||..++. .=+.-|..+|+++.+-|...
T Consensus 67 ~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el~~~ 104 (245)
T 1a0r_P 67 RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQK 104 (245)
T ss_dssp -CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCChhhhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 3456789999998872 33457788888887766643
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.30 E-value=2.1e+02 Score=25.09 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred cchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhhhcccccchhhhhhHHHHHHHHHHH
Q 040046 28 LFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRRLKIDLWSSQYEKMQENLKNLKEVN 98 (221)
Q Consensus 28 L~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~en 98 (221)
|+-+|+.-+---||..|+ ...+-.-|.....|+.+|++..+- ....++.|+++|..+.+-+
T Consensus 23 ~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~er~-----~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVDQD-----FTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred hhhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHhh
Confidence 444555555555666665 222222232223688999887743 2344555666655554433
No 43
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=36.86 E-value=9 Score=27.66 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.4
Q ss_pred ecCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccc
Q 040046 11 IENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEY 57 (221)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~ 57 (221)
|.++.-...||-=.-.-|.+|.-+||.+ |++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEe
Confidence 4455556777877888999999999966 89999999985554
No 44
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.84 E-value=1.3e+02 Score=22.25 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 115 DLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
++|+++...+-...+.+-..+..+ .+++.++++.+..+...|+.....|...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877765544332222222 33566666666666666666555555444
No 45
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=36.72 E-value=8.2 Score=20.32 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.0
Q ss_pred CCcccccccccc
Q 040046 15 TNRQVTFSKRRN 26 (221)
Q Consensus 15 ~~RqvTfsKRr~ 26 (221)
+.|++.|+||+.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567888888864
No 46
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.49 E-value=49 Score=19.15 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040046 145 GQIVTHRKKVRREEEEN 161 (221)
Q Consensus 145 ~qi~~lkkK~~~l~e~n 161 (221)
+||..++.|...|.++-
T Consensus 15 eQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666665555553
No 47
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=36.05 E-value=3.1e+02 Score=26.55 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=19.0
Q ss_pred eeeecCCCccccccccchhhHHHHHHHHhh
Q 040046 45 IIMCSSTGKVQEYVSSSTTTKQLLDEYQRR 74 (221)
Q Consensus 45 lIifs~~gk~~~~~sps~~~~~ii~RY~~~ 74 (221)
+++|.+.|+...|.+ +++||..|-..
T Consensus 598 ~~l~d~~g~~pk~~~----l~eiL~~F~~~ 623 (803)
T 3qx3_A 598 MVLFDHMGCLKKYET----VQDILKEFFDL 623 (803)
T ss_dssp EEEECTTSCEEEESC----HHHHHHHHHHH
T ss_pred EEEECCCCCcceeCC----HHHHHHHHHHH
Confidence 467888887777766 56888888654
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.43 E-value=2.3e+02 Score=25.41 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 040046 90 NLKNLKEV 97 (221)
Q Consensus 90 el~kLk~e 97 (221)
++.+++++
T Consensus 464 ~i~~l~~~ 471 (597)
T 3oja_B 464 EVQQLTNE 471 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344433
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.34 E-value=1.4e+02 Score=22.25 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=6.1
Q ss_pred Cccccccccc
Q 040046 52 GKVQEYVSSS 61 (221)
Q Consensus 52 gk~~~~~sps 61 (221)
|+.|..+.|.
T Consensus 16 Gk~Y~i~g~e 25 (138)
T 3hnw_A 16 GKVIKLGGYE 25 (138)
T ss_dssp TEEEEECSCS
T ss_pred CEEEEecCCC
Confidence 6666666653
No 50
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.12 E-value=45 Score=20.69 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 040046 83 QYEKMQENLKNLKEVNINLKKEIR 106 (221)
Q Consensus 83 ~~e~lq~el~kLk~en~~L~~~ir 106 (221)
.|+.+-.+.+-|+.+|..|++++.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456677778888999988887763
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.20 E-value=95 Score=19.78 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 133 RIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 133 ~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
.+.|.+|-+- ++.+..++..|+.+|..|..++
T Consensus 15 ~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 15 TRYRQKKRAE----QEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 3456666666666666666555
No 52
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=31.85 E-value=25 Score=24.89 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=24.4
Q ss_pred cCcceeeeeecCCCccccccccchhhHHHHHHHHh
Q 040046 39 CDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQR 73 (221)
Q Consensus 39 Cda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~ 73 (221)
|+.--.++|+ |+|..|...+|. .+.+|++.+-.
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e-~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPE-DVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGG-GHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHH-HHHHHHHHHHH
Confidence 5554455555 889899888886 69999998743
No 53
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=30.54 E-value=54 Score=20.40 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=11.7
Q ss_pred CCCCCHHHHHHHHHHHH
Q 040046 113 LNDLSLKKLSDLEQDVD 129 (221)
Q Consensus 113 L~~Ls~~EL~~LE~~Le 129 (221)
|..||++||..--..|+
T Consensus 7 Lk~ls~eEL~~rl~~Ld 23 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALD 23 (51)
T ss_dssp GGGSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHcc
Confidence 56789999887554444
No 54
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=29.11 E-value=1.5e+02 Score=20.70 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=27.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 040046 79 LWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLN 114 (221)
Q Consensus 79 ~~~~~~e~lq~el~kLk~en~~L~~~ir~~~Ge~L~ 114 (221)
+-+.++-.|.+++.+|-.+....+..|+.+-|.|..
T Consensus 49 L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~ 84 (92)
T 1x4t_A 49 LGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYG 84 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 445666778888888888888888888888888753
No 55
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=28.66 E-value=15 Score=26.55 Aligned_cols=52 Identities=13% Similarity=0.251 Sum_probs=38.6
Q ss_pred ceeEEe-cCCCCccccccccccccchhhhhhhcccCcceeeeeecCCCccccccccchhhHHHHHHHHhh
Q 040046 6 IQIKRI-ENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYVSSSTTTKQLLDEYQRR 74 (221)
Q Consensus 6 i~ik~I-en~~~RqvTfsKRr~GL~KKA~ELSvLCda~v~lIifs~~gk~~~~~sps~~~~~ii~RY~~~ 74 (221)
+++|-+ +|.+|=.++|.||-.|+- -+=...+|..-.|+..- .++++..|...
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiR---------------qfEi~n~G~fRI~gYk~--se~~~~~f~sl 75 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIR---------------NFEINNNGNMRIFGYKM--MEHHIQKFTDI 75 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEE---------------EEEECTTSEEEEEEESC--CHHHHHHHHTT
T ss_pred ceeeeeEeeccceEEeeecccCcee---------------EEEEecCCcEEEEEecC--CHHHHHHHHhc
Confidence 778865 889999999999999983 23344678777777642 36788888765
No 56
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.35 E-value=77 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhccc-----ccchhhhhhHHHHHHHHHHHHHHH
Q 040046 65 KQLLDEYQRRLKID-----LWSSQYEKMQENLKNLKEVNINLK 102 (221)
Q Consensus 65 ~~ii~RY~~~~~~~-----~~~~~~e~lq~el~kLk~en~~L~ 102 (221)
+.|.++.+.+-..- -+...++.+++++..|+++|..|+
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655543221 122334455556666666665554
No 57
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=26.57 E-value=1.1e+02 Score=24.55 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040046 82 SQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSD 123 (221)
Q Consensus 82 ~~~e~lq~el~kLk~en~~L~~~ir~~~Ge~L~~Ls~~EL~~ 123 (221)
+.+..++....++..+++.|+..+..+.|..-+.++++-+.+
T Consensus 44 s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~k 85 (206)
T 3oa7_A 44 SEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQ 85 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhh
Confidence 445556666677888888888877777776655555555544
No 58
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.53 E-value=86 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 145 GQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 145 ~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
++++.+++++..|+.+|..|+.+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888876
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.31 E-value=1.2e+02 Score=18.91 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 142 AISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 142 ~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
.+..+...|+.++..|.+++..|...+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777788888888877776654
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.85 E-value=1.4e+02 Score=19.53 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 040046 130 NCLRIIRERKLRAI 143 (221)
Q Consensus 130 ~~L~~VR~rK~~~l 143 (221)
.+-...|.||.+-|
T Consensus 18 ~AQRafReRK~~~i 31 (70)
T 1gd2_E 18 AAQRAFRKRKEDHL 31 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677776554
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.70 E-value=2.1e+02 Score=21.05 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 115 DLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
++|+++...+-...+.+-..+..+ .+++.+++..+.++...|+.....|...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR-LKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888766443322222222 24667777777777777776655555544
No 62
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.16 E-value=84 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=16.9
Q ss_pred HhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 040046 72 QRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIR 106 (221)
Q Consensus 72 ~~~~~~~~~~~~~e~lq~el~kLk~en~~L~~~ir 106 (221)
....+.+.+...++.+++.++.++.+.+.++..+.
T Consensus 158 ~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 192 (203)
T 3qks_A 158 REVLNLDKFETAYKKLSELKKTINNRIKEYRDILA 192 (203)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555555555555555554443
No 63
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=23.88 E-value=73 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=25.3
Q ss_pred hcccCcceeeeeecCCCcccc-ccccch------hhHHHHHHHHh
Q 040046 36 TVLCDAKVSIIMCSSTGKVQE-YVSSST------TTKQLLDEYQR 73 (221)
Q Consensus 36 SvLCda~v~lIifs~~gk~~~-~~sps~------~~~~ii~RY~~ 73 (221)
+.-|++.|-+++|||.-+.|- |. |.. .+++||+.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfI-PnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLI-PYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEE-ESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeec-cCCHHHHHHHHHHHHHHHHH
Confidence 566999999999999877764 33 332 34555555554
No 64
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.85 E-value=1.8e+02 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 145 GQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 145 ~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
++|..|+.+...|+++|.+|..+.
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466788888889999999998765
No 65
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.70 E-value=3.6e+02 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040046 140 LRAISGQIVTHRKKVRREE 158 (221)
Q Consensus 140 ~~~l~~qi~~lkkK~~~l~ 158 (221)
.+-+..+|.++..+.+.++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 66
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.37 E-value=91 Score=19.10 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040046 141 RAISGQIVTHRKKVRREEEENR 162 (221)
Q Consensus 141 ~~l~~qi~~lkkK~~~l~e~n~ 162 (221)
+-+...+...+++.+.|+++|-
T Consensus 17 eeler~lrk~kk~iKklEdeNP 38 (50)
T 1a92_A 17 EELERDLRKLKKKIKKLEEDNP 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhhccCC
Confidence 3455555667778888888874
No 67
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.28 E-value=81 Score=18.06 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 040046 85 EKMQENLKNLKEVNINLK 102 (221)
Q Consensus 85 e~lq~el~kLk~en~~L~ 102 (221)
+.-++++..|+++|..|.
T Consensus 17 e~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 17 EQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 444566777777776653
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.81 E-value=4.1e+02 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 040046 89 ENLKNLKEVNINL 101 (221)
Q Consensus 89 ~el~kLk~en~~L 101 (221)
+++..++.+...+
T Consensus 456 ~e~~~~~~~i~~l 468 (597)
T 3oja_B 456 AEVNELRAEVQQL 468 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 69
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.42 E-value=29 Score=26.22 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=28.3
Q ss_pred ccccc-ccccccc---------chhhhhhhcccCcceeeeeecCCCc
Q 040046 17 RQVTF-SKRRNGL---------FKKAQELTVLCDAKVSIIMCSSTGK 53 (221)
Q Consensus 17 RqvTf-sKRr~GL---------~KKA~ELSvLCda~v~lIifs~~gk 53 (221)
+.+|| |+-|+.| +-+..|+.+-||.|+-|+..-+.|.
T Consensus 54 g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 54 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 34454 6666644 5567899999999999999998884
No 70
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=21.66 E-value=1.1e+02 Score=20.09 Aligned_cols=38 Identities=11% Similarity=0.264 Sum_probs=28.3
Q ss_pred cceeeeeecCCCc--cccccccchhhHHHHHHHHhhhccc
Q 040046 41 AKVSIIMCSSTGK--VQEYVSSSTTTKQLLDEYQRRLKID 78 (221)
Q Consensus 41 a~v~lIifs~~gk--~~~~~sps~~~~~ii~RY~~~~~~~ 78 (221)
..+-|.|-+.+|+ .+.-..|++.+..|++.|....+..
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~ 45 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS 45 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 4567778888885 4555667788999999998876543
No 71
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.91 E-value=55 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=22.1
Q ss_pred eeeeecCCCccccccccchhhHHHHHHHH
Q 040046 44 SIIMCSSTGKVQEYVSSSTTTKQLLDEYQ 72 (221)
Q Consensus 44 ~lIifs~~gk~~~~~sps~~~~~ii~RY~ 72 (221)
.|+|||-+....+||..+..++++++.+.
T Consensus 17 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g 45 (121)
T 3gx8_A 17 PVVLFMKGTPEFPKCGFSRATIGLLGNQG 45 (121)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHT
T ss_pred CEEEEEeccCCCCCCccHHHHHHHHHHcC
Confidence 47888875555677877778899998874
No 72
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.85 E-value=1.9e+02 Score=19.22 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 115 DLSLKKLSDLEQDVDNCLR-IIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~-~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
|+|++|+..+-...+..-. .+. .-..++.+++..+.++...|+.....|...+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~-~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQ-ESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887654331110 111 2234666777777777777766655555443
No 73
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.68 E-value=1.4e+02 Score=23.54 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040046 132 LRIIRERKLRAISGQIVTHRKKVRREEEENRKLRNGF 168 (221)
Q Consensus 132 L~~VR~rK~~~l~~qi~~lkkK~~~l~e~n~~L~~~~ 168 (221)
-..|.++|.+++ +.+++|...|.++...|..++
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~ 42 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEEC 42 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 356888888887 688899888888877777765
No 74
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=20.21 E-value=85 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=18.7
Q ss_pred eeeeeecCCCccccccccchhhHHHHHHHHh
Q 040046 43 VSIIMCSSTGKVQEYVSSSTTTKQLLDEYQR 73 (221)
Q Consensus 43 v~lIifs~~gk~~~~~sps~~~~~ii~RY~~ 73 (221)
+.+|+|.. +||.++..+..++++..+
T Consensus 4 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~ 29 (85)
T 1fo5_A 4 VKIELFTS-----PMCPHCPAAKRVVEEVAN 29 (85)
T ss_dssp EEEEEEEC-----CCSSCCCTHHHHHHHHHH
T ss_pred eEEEEEeC-----CCCCchHHHHHHHHHHHH
Confidence 56788876 588888777777776644
Done!