BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040047
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 57 MQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPE 112
++H H H L L TTY C+ C E GS++S+ C CDFDLH +CA E
Sbjct: 494 LKHELHDEHELVLTRCTTYG-----CDGCDEMGSSWSYRCRECDFDLHPKCALGKE 544
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 48 EQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQC 107
E + + ++H H H L L Y+ C+ C E G+ +S+ C CDFDLH +C
Sbjct: 489 EIAKDWPKKVKHVLHEEHELELTRVQVYT-----CDKCEEEGTIWSYHCDECDFDLHAKC 543
Query: 108 AF 109
A
Sbjct: 544 AL 545
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN---RNNSDSA 180
Y CD C ++ WSY+C C+F H C N + N D A
Sbjct: 516 YTCDKCE---EEGTIWSYHCDECDFDLHAKCALNEDTKENGDEA 556
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 57 MQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAF 109
++H H H L L TTY C+ C E G ++S+ C CDFDLH +CA
Sbjct: 505 LKHDLHD-HELVLTRCTTYG-----CDGCDEMGDSWSYRCKECDFDLHPKCAL 551
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 111 PEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSC 170
PE L HD H H L L+ ++Y CD C + D WSY C C+F H C
Sbjct: 502 PEKLKHDLHDHELVLT---------RCTTYGCDGCDEMGDS---WSYRCKECDFDLHPKC 549
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 110 LPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVS 169
LP + + H H L L A +YVCD C KQ FW+++C AC++ H +
Sbjct: 335 LPRKVKDNKHEHELKLDMA---------KAYVCDFCKKQ---GRFWAFSCNACDYDLHPT 382
Query: 170 CT 171
C
Sbjct: 383 CV 384
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 41 ECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCD 100
E K L ++ + R ++ H H L L Y +C+ C + G ++F C CD
Sbjct: 323 ELKACLKKEGDSLPRKVKDNKHE-HELKLDMAKAY-----VCDFCKKQGRFWAFSCNACD 376
Query: 101 FDLHVQCA 108
+DLH C
Sbjct: 377 YDLHPTCV 384
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 111 PEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSC 170
P L H H H L++ + Y+C C +Q W+Y C AC + H+ C
Sbjct: 334 PPSLRHTGHRHELSI-----VSDKSGGGPYICCECD---EQGLGWAYQCIACGYEIHLRC 385
Query: 171 TRN 173
R+
Sbjct: 386 GRD 388
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 56 AMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCA 108
+++HT H H L++V + G ++C C E G +++ C C +++H++C
Sbjct: 336 SLRHTGH-RHELSIVSDKS-GGGPYICCECDEQGLGWAYQCIACGYEIHLRCG 386
>sp|Q5TJ57|FORE_DICDI Formin-E OS=Dictyostelium discoideum GN=forE PE=1 SV=1
Length = 1561
Score = 35.4 bits (80), Expect = 0.40, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNNSDSAKPEPNSAAYQ 190
S+SY C C +KC S N C+ H +NR+ + S PNS A Q
Sbjct: 402 STSYKCFFCGVVCHKKCLDSMNTIPCSSAIHNIKGKNRSQTISGYAPPNSLALQ 455
>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=pitx3 PE=2 SV=1
Length = 292
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 177 SDSAKPEPNSAAYQKEESASGSSQQNQTERTEIEDPVLEAQLELQRLQLEMQMAQEL 233
SDS P+ + + +E S + SQQNQT+ + ED +L+ + QR Q QEL
Sbjct: 19 SDSGTPQHDHSCKGQEHSDTEKSQQNQTDDSNPEDGILKKKQRRQRTHFTSQQLQEL 75
>sp|Q4A3R3|DMBT1_PIG Deleted in malignant brain tumors 1 protein OS=Sus scrofa GN=DMBT1
PE=2 SV=1
Length = 1204
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 17/151 (11%)
Query: 33 SGSAYGCWECK---FFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89
SG+ W+C+ +F H CG++ A S P T P T YS G FL A G
Sbjct: 707 SGTESTLWQCRNRGWFSH-NCGHSEDAGVICSVPAF-TTTPPATNYSCGGFLSQAAGGFN 764
Query: 90 SAFSFCCP-------LCDFDLHVQCAFLPEILIHDSHFHS-LNLSYALPAAHHYESSSYV 141
S F P C +D+ VQ + ++ D S N Y Y SS +
Sbjct: 765 SPFY---PGNYPNNANCVWDIEVQNNYRVTVVFRDVQLESGCNFDYIEVFDGPYRSSPLL 821
Query: 142 CDICHKQLDQKCFWSYNCFACNFHAHVSCTR 172
+C+ S N + F + VS TR
Sbjct: 822 ARVCNGA-SGSFTSSSNFMSIRFISDVSVTR 851
>sp|Q45FX5|VAV_CAEEL Protein vav-1 OS=Caenorhabditis elegans GN=vav-1 PE=1 SV=1
Length = 1007
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 116 HDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSC 170
H FHS + PA CD+C K + + Y C +CN H C
Sbjct: 611 HKVAFHSFRVDVKNPAT---------CDVCDKLMKGLQYQGYKCESCNMSMHKEC 656
>sp|P49621|DGKB_RAT Diacylglycerol kinase beta OS=Rattus norvegicus GN=Dgkb PE=2 SV=1
Length = 801
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 23/102 (22%)
Query: 82 CNAC-------GEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHH 134
CN C G+ G CC C + +H +CA P I N HH
Sbjct: 257 CNLCLNMLIGVGKQG----LCCSFCKYTVHERCARAPPSCIKTYVKSKKNTD----VMHH 308
Query: 135 Y---ESSSYVCDICHKQLDQKCFW---SYNCFACNFHAHVSC 170
Y + CD CHK + KC+ +C C H C
Sbjct: 309 YWVEGNCPTKCDKCHKTV--KCYQGLTGLHCVWCQTTLHNKC 348
>sp|P34125|DGKA_DICDI Diacylglycerol kinase A OS=Dictyostelium discoideum GN=dgkA PE=1
SV=3
Length = 887
Score = 31.6 bits (70), Expect = 5.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 129 LPAAHHYESSSYV----CDICHKQLDQKCFWSYNCFACNFHAHVSCT 171
L +H+++ S+ CD C L C + C CNF AH CT
Sbjct: 4 LNISHNWKIKSFTSITFCDHCGSMLWGICTQGFQCSDCNFSAHSHCT 50
>sp|B3R6U7|PYRF_CUPTR Orotidine 5'-phosphate decarboxylase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=pyrF PE=3 SV=1
Length = 272
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 85 CGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHY 135
G G+ FSFC + D + CAF P+I ++FHS L HY
Sbjct: 34 TGAGGAIFSFCREIVDATADLVCAFKPQI----AYFHSQRAEDQLEQLIHY 80
>sp|Q0K6Y9|PYRF_CUPNH Orotidine 5'-phosphate decarboxylase OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pyrF PE=3
SV=1
Length = 272
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 85 CGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHY 135
G G+ FSFC + D + CAF P+I ++FHS L HY
Sbjct: 34 TGAGGAIFSFCREIVDATADLVCAFKPQI----AYFHSQRAEDQLEQLIHY 80
>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1
SV=1
Length = 734
Score = 31.2 bits (69), Expect = 7.3, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 19 HGNEYSCSACELIISGSAYG-----CWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTT 73
H + +C+ C L+ S+ G C +C L + C + R + T H +V
Sbjct: 95 HSGKPTCALCPLVGGKSSGGPATARCLDCADDLCQACADGHRCSRQT----HKHRVVDLV 150
Query: 74 TYSAGNF-------LCNACGE-PGSAFSFCCPLCDFDLHVQCAFLPEI 113
Y AG + + C + PG A F C C L C P I
Sbjct: 151 GYRAGWYDEEARERQASQCPQHPGEALCFLCQPCSQLLCKDCRLGPHI 198
>sp|Q86XP1|DGKH_HUMAN Diacylglycerol kinase eta OS=Homo sapiens GN=DGKH PE=1 SV=1
Length = 1220
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 4 KHFSHPHNLRIYQVQHGNEYSCSACELIISG-SAYG--CWECKFFLHEQCG 51
+HFS HN Y H C+ C +SG +++G C CKF H++C
Sbjct: 170 EHFSGMHNW--YACSHARPTFCNVCRESLSGVTSHGLSCEVCKFKAHKRCA 218
>sp|Q32KN0|ZN572_BOVIN Zinc finger protein 572 OS=Bos taurus GN=ZNF572 PE=2 SV=1
Length = 529
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 28/147 (19%)
Query: 3 YKHFSHPHNLRIYQVQHGNE--YSCSACELIISGSAYGCWECKFFLHE---QCGNASRAM 57
+K FS+ +LRI+Q H E Y CS C S S++ + E QCG ++
Sbjct: 137 WKSFSNSSHLRIHQRTHSGEKPYRCSECGKCFSNSSHLIQHLRTHTGEKPYQCGECGKSF 196
Query: 58 QHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFS--------------FCCPLCDFDL 103
+TS HL + T + C C + S+ S + CPLC
Sbjct: 197 SNTS----HLIIHERTHTGEKPYKCPECAKSLSSSSHLIQHHRSHTGEKPYECPLCG--- 249
Query: 104 HVQCAFLPEILIHDSHFHSLNLSYALP 130
+C +L+ H+ Y P
Sbjct: 250 --KCFSHSYVLVEHQRTHTGEKPYKCP 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.130 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,378,666
Number of Sequences: 539616
Number of extensions: 3495133
Number of successful extensions: 12215
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 12116
Number of HSP's gapped (non-prelim): 157
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)