Query 040047
Match_columns 240
No_of_seqs 148 out of 848
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v5n_A PDI-like hypothetical p 99.7 4.2E-17 1.4E-21 120.5 4.1 67 42-113 15-81 (89)
2 1v5n_A PDI-like hypothetical p 99.4 2.8E-14 9.5E-19 105.3 1.7 66 99-176 15-81 (89)
3 3pfq_A PKC-B, PKC-beta, protei 98.2 4.2E-07 1.4E-11 88.5 3.2 95 10-110 38-147 (674)
4 2fc7_A ZZZ3 protein; structure 98.2 2E-06 6.9E-11 62.0 4.9 51 21-73 20-76 (82)
5 2dip_A Zinc finger SWIM domain 98.1 1E-06 3.4E-11 65.7 2.5 46 21-72 30-77 (98)
6 2e5r_A Dystrobrevin alpha; ZZ 98.0 5.5E-06 1.9E-10 56.8 3.8 46 23-70 12-60 (63)
7 3pfq_A PKC-B, PKC-beta, protei 97.8 6.7E-06 2.3E-10 80.0 3.2 100 64-175 37-149 (674)
8 1tot_A CREB-binding protein; z 97.8 8.3E-06 2.9E-10 53.7 1.7 44 21-72 5-49 (52)
9 1ptq_A Protein kinase C delta 97.5 8.6E-05 2.9E-09 47.9 3.3 42 10-53 1-45 (50)
10 2enz_A NPKC-theta, protein kin 97.4 0.00013 4.6E-09 49.8 3.8 44 8-53 11-57 (65)
11 1tot_A CREB-binding protein; z 97.3 3.9E-05 1.3E-09 50.5 0.6 41 79-126 6-47 (52)
12 2db6_A SH3 and cysteine rich d 97.3 8.4E-05 2.9E-09 52.3 2.2 48 5-54 13-63 (74)
13 2yuu_A NPKC-delta, protein kin 97.3 0.00014 4.8E-09 52.2 3.1 47 5-53 13-62 (83)
14 2e5r_A Dystrobrevin alpha; ZZ 97.3 8.6E-05 2.9E-09 50.7 1.9 45 79-125 11-59 (63)
15 1y8f_A UNC-13 homolog A, MUNC1 97.3 0.00014 4.7E-09 49.9 2.9 43 9-53 13-58 (66)
16 3uej_A NPKC-delta, protein kin 97.3 0.00017 5.7E-09 49.3 3.0 43 9-53 9-54 (65)
17 2eli_A Protein kinase C alpha 97.2 0.00026 8.9E-09 51.0 4.0 47 6-54 14-63 (85)
18 1faq_A RAF-1; transferase, ser 97.2 0.00024 8.3E-09 46.1 3.3 42 9-53 3-44 (52)
19 2dip_A Zinc finger SWIM domain 97.2 0.00018 6.2E-09 53.4 2.9 43 79-126 31-75 (98)
20 2enn_A NPKC-theta, protein kin 97.2 0.00012 4.3E-09 51.8 1.9 46 6-53 20-68 (77)
21 1rfh_A RAS association (ralgds 97.1 0.00025 8.5E-09 47.6 2.8 45 8-54 9-54 (59)
22 2fc7_A ZZZ3 protein; structure 97.1 0.00035 1.2E-08 50.2 3.6 48 79-128 21-75 (82)
23 1kbe_A Kinase suppressor of RA 97.1 0.0003 1E-08 45.6 2.8 42 9-54 4-45 (49)
24 2fnf_X Putative RAS effector N 97.0 0.0005 1.7E-08 48.1 3.7 45 8-54 22-67 (72)
25 2row_A RHO-associated protein 96.7 0.00042 1.4E-08 50.0 1.1 41 10-52 25-70 (84)
26 1kbe_A Kinase suppressor of RA 96.5 0.0025 8.5E-08 41.2 3.8 40 65-110 5-44 (49)
27 1ptq_A Protein kinase C delta 96.5 0.002 7E-08 41.2 3.2 33 78-110 10-45 (50)
28 2enz_A NPKC-theta, protein kin 96.3 0.0042 1.4E-07 42.2 4.1 43 64-110 12-57 (65)
29 1faq_A RAF-1; transferase, ser 96.2 0.0037 1.3E-07 40.3 3.4 42 64-110 3-44 (52)
30 4b6d_A RAC GTPase-activating p 96.2 0.006 2.1E-07 41.1 4.5 36 138-174 18-53 (61)
31 1rfh_A RAS association (ralgds 96.2 0.0034 1.2E-07 42.0 3.1 43 64-110 10-53 (59)
32 2eli_A Protein kinase C alpha 96.1 0.0089 3E-07 42.8 5.3 43 64-110 17-62 (85)
33 4b6d_A RAC GTPase-activating p 96.1 0.0038 1.3E-07 42.1 3.1 43 9-53 8-52 (61)
34 1y8f_A UNC-13 homolog A, MUNC1 96.1 0.0052 1.8E-07 41.9 3.8 43 64-110 13-58 (66)
35 3uej_A NPKC-delta, protein kin 96.1 0.0041 1.4E-07 42.2 3.2 43 64-110 9-54 (65)
36 2db6_A SH3 and cysteine rich d 96.1 0.0056 1.9E-07 42.7 4.0 43 64-110 17-62 (74)
37 2fnf_X Putative RAS effector N 96.0 0.0059 2E-07 42.5 3.7 43 64-110 23-66 (72)
38 2yuu_A NPKC-delta, protein kin 95.9 0.0072 2.4E-07 43.1 4.1 43 64-110 17-62 (83)
39 2enn_A NPKC-theta, protein kin 95.9 0.007 2.4E-07 42.6 3.8 43 64-110 23-68 (77)
40 2row_A RHO-associated protein 95.1 0.0091 3.1E-07 42.9 2.2 44 62-109 22-70 (84)
41 2ysm_A Myeloid/lymphoid or mix 94.2 0.062 2.1E-06 40.0 4.9 82 78-176 6-89 (111)
42 3ky9_A Proto-oncogene VAV; cal 93.8 0.033 1.1E-06 53.1 3.3 44 9-54 518-564 (587)
43 2vrw_B P95VAV, VAV1, proto-onc 93.5 0.043 1.5E-06 49.6 3.5 43 10-54 347-392 (406)
44 1r79_A Diacylglycerol kinase, 93.5 0.035 1.2E-06 39.8 2.2 37 138-174 37-74 (84)
45 2ysm_A Myeloid/lymphoid or mix 92.5 0.35 1.2E-05 35.8 6.7 80 21-111 6-87 (111)
46 2kwj_A Zinc finger protein DPF 91.9 0.11 3.9E-06 39.0 3.3 82 81-176 3-93 (114)
47 3v43_A Histone acetyltransfera 91.8 0.11 3.9E-06 38.8 3.1 86 79-176 5-97 (112)
48 3cxl_A N-chimerin; SH2, RHO-GA 91.5 0.11 3.7E-06 48.2 3.3 44 9-54 209-255 (463)
49 2kwj_A Zinc finger protein DPF 89.8 0.17 5.7E-06 38.0 2.5 74 24-111 3-91 (114)
50 2jun_A Midline-1; B-BOX, TRIM, 89.0 0.27 9.2E-06 35.5 3.0 84 21-109 2-87 (101)
51 3ky9_A Proto-oncogene VAV; cal 87.6 0.33 1.1E-05 46.1 3.5 43 64-110 518-563 (587)
52 1r79_A Diacylglycerol kinase, 86.2 0.41 1.4E-05 34.1 2.5 43 9-53 27-73 (84)
53 2vrw_B P95VAV, VAV1, proto-onc 84.9 0.71 2.4E-05 41.5 4.1 43 64-110 346-391 (406)
54 3v43_A Histone acetyltransfera 83.2 0.57 2E-05 34.8 2.2 81 22-111 5-95 (112)
55 4gne_A Histone-lysine N-methyl 81.6 3 0.0001 30.9 5.6 74 78-176 14-89 (107)
56 3cxl_A N-chimerin; SH2, RHO-GA 81.4 0.93 3.2E-05 41.8 3.4 42 65-110 210-254 (463)
57 2yt5_A Metal-response element- 80.5 2.1 7.3E-05 28.3 4.1 38 138-176 5-43 (66)
58 1we9_A PHD finger family prote 79.4 2.2 7.5E-05 28.1 3.9 38 138-176 5-42 (64)
59 2lri_C Autoimmune regulator; Z 78.9 1.1 3.8E-05 30.2 2.3 49 79-149 12-60 (66)
60 2l5u_A Chromodomain-helicase-D 78.4 1.3 4.3E-05 29.3 2.4 50 77-148 9-58 (61)
61 2k16_A Transcription initiatio 78.3 2 6.8E-05 29.3 3.5 46 10-55 6-52 (75)
62 2ku3_A Bromodomain-containing 78.2 1.5 5.1E-05 30.0 2.8 37 138-175 15-52 (71)
63 4gne_A Histone-lysine N-methyl 77.9 6.8 0.00023 28.9 6.6 68 20-111 13-87 (107)
64 2yql_A PHD finger protein 21A; 77.0 2.3 8E-05 27.4 3.4 35 137-176 7-41 (56)
65 2ku3_A Bromodomain-containing 76.6 1.5 5.1E-05 30.0 2.4 34 21-54 15-51 (71)
66 2rmf_A Urocortin, HUCN1; CRF l 76.3 5 0.00017 24.2 4.3 29 211-239 11-39 (40)
67 1fp0_A KAP-1 corepressor; PHD 75.6 2.7 9.1E-05 30.1 3.6 51 19-88 22-72 (88)
68 1wjv_A Cell growth regulating 74.8 4.6 0.00016 28.3 4.5 40 138-177 9-65 (79)
69 1wil_A KIAA1045 protein; ring 74.4 1.8 6.2E-05 30.8 2.4 63 21-88 14-76 (89)
70 1z60_A TFIIH basal transcripti 74.2 1.2 4.3E-05 29.5 1.4 31 23-53 16-47 (59)
71 2yt5_A Metal-response element- 73.6 3.2 0.00011 27.4 3.4 34 78-111 5-41 (66)
72 1we9_A PHD finger family prote 72.0 3.8 0.00013 26.9 3.5 35 78-112 5-41 (64)
73 2lq6_A Bromodomain-containing 69.8 2.6 8.8E-05 30.0 2.4 43 10-54 7-51 (87)
74 1xwh_A Autoimmune regulator; P 69.7 3.7 0.00013 27.4 3.0 33 138-175 7-39 (66)
75 1joc_A EEA1, early endosomal a 69.6 1.6 5.4E-05 33.2 1.3 34 21-54 68-103 (125)
76 1fp0_A KAP-1 corepressor; PHD 69.4 4.8 0.00016 28.8 3.7 34 137-175 23-56 (88)
77 2xb1_A Pygopus homolog 2, B-ce 67.3 4.6 0.00016 29.6 3.4 36 139-175 3-39 (105)
78 2puy_A PHD finger protein 21A; 66.9 4.2 0.00014 26.5 2.8 34 138-176 4-37 (60)
79 2k16_A Transcription initiatio 66.8 2.9 0.0001 28.4 2.1 54 77-150 16-70 (75)
80 1f62_A Transcription factor WS 66.3 2.6 8.8E-05 26.4 1.6 33 141-175 2-34 (51)
81 1wev_A Riken cDNA 1110020M19; 66.1 5.6 0.00019 28.1 3.5 39 138-176 15-53 (88)
82 2yql_A PHD finger protein 21A; 66.0 6.1 0.00021 25.3 3.4 33 77-111 7-39 (56)
83 1f62_A Transcription factor WS 65.5 3.1 0.00011 26.1 1.9 31 81-111 2-33 (51)
84 3asl_A E3 ubiquitin-protein li 64.7 5.1 0.00017 27.1 3.0 34 141-176 20-53 (70)
85 2lv9_A Histone-lysine N-methyl 64.7 7.6 0.00026 28.0 4.1 35 138-175 27-61 (98)
86 2lri_C Autoimmune regulator; Z 64.7 2.6 9E-05 28.3 1.5 33 138-175 11-43 (66)
87 2jun_A Midline-1; B-BOX, TRIM, 63.9 3.5 0.00012 29.3 2.2 84 79-172 3-87 (101)
88 2puy_A PHD finger protein 21A; 63.7 5.7 0.0002 25.8 3.0 32 78-111 4-35 (60)
89 1wev_A Riken cDNA 1110020M19; 63.5 5.4 0.00019 28.2 3.0 33 79-111 16-51 (88)
90 2l43_A N-teminal domain from h 63.4 3.4 0.00011 29.4 1.9 38 138-175 24-61 (88)
91 3o70_A PHD finger protein 13; 62.5 7.7 0.00026 26.1 3.5 35 77-112 17-52 (68)
92 2e6s_A E3 ubiquitin-protein li 61.7 6.8 0.00023 27.1 3.2 34 141-176 28-61 (77)
93 2vpb_A Hpygo1, pygopus homolog 61.7 4.3 0.00015 27.1 2.1 38 138-176 7-45 (65)
94 3shb_A E3 ubiquitin-protein li 61.1 9.3 0.00032 26.4 3.8 34 141-176 28-61 (77)
95 3nis_A E3 ubiquitin-protein li 60.9 9.9 0.00034 26.7 4.0 27 83-109 9-41 (82)
96 1xwh_A Autoimmune regulator; P 60.7 6.4 0.00022 26.1 2.9 49 78-148 7-55 (66)
97 1go9_A Corticotropin releasing 60.6 2.4 8.2E-05 25.9 0.6 29 212-240 13-41 (42)
98 1mm2_A MI2-beta; PHD, zinc fin 60.3 4.1 0.00014 26.7 1.8 34 137-175 7-40 (61)
99 2lv9_A Histone-lysine N-methyl 60.3 6.9 0.00024 28.2 3.2 32 79-111 28-60 (98)
100 1wee_A PHD finger family prote 60.3 12 0.00039 25.2 4.1 38 137-176 14-51 (72)
101 3kqi_A GRC5, PHD finger protei 59.6 6.7 0.00023 26.7 2.9 37 138-176 9-45 (75)
102 2l43_A N-teminal domain from h 59.5 6.1 0.00021 28.0 2.7 51 78-150 24-77 (88)
103 1weo_A Cellulose synthase, cat 59.3 4.1 0.00014 29.3 1.7 33 78-110 15-52 (93)
104 2e6r_A Jumonji/ARID domain-con 57.8 7 0.00024 27.9 2.8 36 138-175 15-50 (92)
105 3asl_A E3 ubiquitin-protein li 57.1 7.9 0.00027 26.1 2.8 31 81-111 20-51 (70)
106 2ri7_A Nucleosome-remodeling f 56.4 5.3 0.00018 31.5 2.1 36 137-174 6-41 (174)
107 2l5u_A Chromodomain-helicase-D 56.3 6.1 0.00021 25.9 2.1 50 20-88 9-58 (61)
108 2ct0_A Non-SMC element 1 homol 55.3 4.7 0.00016 27.7 1.5 34 137-174 13-46 (74)
109 3o36_A Transcription intermedi 55.0 7.2 0.00025 31.1 2.8 49 79-149 4-52 (184)
110 1mm2_A MI2-beta; PHD, zinc fin 53.8 7.2 0.00024 25.5 2.1 51 77-149 7-57 (61)
111 2dkt_A Ring finger and CHY zin 53.8 5.3 0.00018 31.2 1.6 20 82-101 104-123 (143)
112 1wil_A KIAA1045 protein; ring 53.5 2.7 9.3E-05 29.9 -0.0 63 78-148 14-76 (89)
113 2ct0_A Non-SMC element 1 homol 52.7 7.4 0.00025 26.7 2.1 33 20-53 13-45 (74)
114 2e6r_A Jumonji/ARID domain-con 51.6 8.7 0.0003 27.4 2.4 34 78-111 15-49 (92)
115 1wew_A DNA-binding family prot 51.5 10 0.00034 26.0 2.7 35 78-113 15-52 (78)
116 3o70_A PHD finger protein 13; 51.2 15 0.00053 24.5 3.5 37 137-176 17-53 (68)
117 3o36_A Transcription intermedi 51.0 51 0.0017 25.9 7.3 32 138-174 3-34 (184)
118 2e6s_A E3 ubiquitin-protein li 51.0 10 0.00035 26.1 2.6 31 81-111 28-59 (77)
119 1wem_A Death associated transc 51.0 10 0.00035 25.7 2.7 35 77-112 14-49 (76)
120 3lqh_A Histone-lysine N-methyl 50.6 11 0.00037 30.4 3.2 36 140-175 3-40 (183)
121 2kgg_A Histone demethylase jar 50.2 15 0.00051 23.1 3.2 35 141-176 4-39 (52)
122 2yw8_A RUN and FYVE domain-con 49.4 11 0.00039 26.0 2.7 34 20-53 17-52 (82)
123 2xb1_A Pygopus homolog 2, B-ce 49.4 12 0.00043 27.2 3.0 34 79-112 3-39 (105)
124 1z60_A TFIIH basal transcripti 49.1 6.4 0.00022 26.0 1.2 32 79-110 15-47 (59)
125 1weo_A Cellulose synthase, cat 48.3 6.7 0.00023 28.1 1.3 36 21-56 15-55 (93)
126 2hwn_E A kinase binding peptid 47.9 5.8 0.0002 21.3 0.7 13 227-239 2-14 (26)
127 3t7l_A Zinc finger FYVE domain 47.5 11 0.00039 26.5 2.5 34 21-54 19-54 (90)
128 3shb_A E3 ubiquitin-protein li 47.4 13 0.00044 25.7 2.7 31 81-111 28-59 (77)
129 3u5n_A E3 ubiquitin-protein li 46.4 12 0.00042 30.4 2.9 60 78-161 6-65 (207)
130 3ask_A E3 ubiquitin-protein li 46.0 10 0.00034 31.8 2.3 31 81-111 176-207 (226)
131 1wep_A PHF8; structural genomi 45.9 13 0.00045 25.4 2.6 36 138-175 11-46 (79)
132 2l27_B Peptide agonist; CRF, E 45.1 9.2 0.00031 22.8 1.3 28 211-238 9-36 (38)
133 1wep_A PHF8; structural genomi 44.7 14 0.00048 25.3 2.6 34 78-112 11-46 (79)
134 3nw0_A Non-structural maintena 43.7 8.5 0.00029 32.3 1.5 33 138-174 179-211 (238)
135 1wg2_A Zinc finger (AN1-like) 43.4 13 0.00043 25.0 2.0 26 21-47 14-39 (64)
136 1x4u_A Zinc finger, FYVE domai 43.3 15 0.00052 25.4 2.6 33 21-53 13-47 (84)
137 3c6w_A P28ING5, inhibitor of g 43.0 17 0.00059 23.5 2.7 34 78-112 8-44 (59)
138 2g6q_A Inhibitor of growth pro 42.9 17 0.00058 23.9 2.6 33 78-111 10-45 (62)
139 2vnf_A ING 4, P29ING4, inhibit 42.9 17 0.00059 23.6 2.6 33 78-111 9-44 (60)
140 1wfh_A Zinc finger (AN1-like) 42.8 13 0.00045 24.9 2.0 27 21-48 14-40 (64)
141 1vfy_A Phosphatidylinositol-3- 42.4 15 0.00053 24.7 2.4 31 23-53 12-44 (73)
142 2jmi_A Protein YNG1, ING1 homo 42.0 17 0.00058 25.9 2.7 34 77-111 24-60 (90)
143 3u5n_A E3 ubiquitin-protein li 41.8 18 0.00062 29.3 3.2 32 138-174 6-37 (207)
144 2ri7_A Nucleosome-remodeling f 41.5 10 0.00034 29.8 1.5 34 77-111 6-41 (174)
145 1wen_A Inhibitor of growth fam 41.0 24 0.00084 23.7 3.3 33 78-111 15-50 (71)
146 2ro1_A Transcription intermedi 40.6 10 0.00035 30.5 1.5 29 80-110 3-31 (189)
147 1wfp_A Zinc finger (AN1-like) 40.5 15 0.00052 25.3 2.1 27 21-48 24-50 (74)
148 2yw8_A RUN and FYVE domain-con 40.3 22 0.00076 24.5 3.1 37 138-175 18-54 (82)
149 1z2q_A LM5-1; membrane protein 40.1 23 0.00079 24.5 3.1 38 138-176 20-57 (84)
150 1z2q_A LM5-1; membrane protein 39.3 27 0.00091 24.2 3.3 34 77-110 19-54 (84)
151 2ecm_A Ring finger and CHY zin 39.1 19 0.00067 21.8 2.4 35 138-173 4-38 (55)
152 2vpb_A Hpygo1, pygopus homolog 38.7 18 0.0006 24.0 2.2 35 78-112 7-44 (65)
153 2jne_A Hypothetical protein YF 38.2 11 0.00039 27.4 1.2 35 138-173 31-70 (101)
154 1wfl_A Zinc finger protein 216 37.7 12 0.00042 25.8 1.3 26 21-47 24-49 (74)
155 3t7l_A Zinc finger FYVE domain 37.1 23 0.0008 24.9 2.8 38 138-176 19-56 (90)
156 1wfk_A Zinc finger, FYVE domai 37.1 32 0.0011 24.1 3.5 33 78-110 8-42 (88)
157 3nw0_A Non-structural maintena 35.8 16 0.00055 30.6 2.0 33 20-53 178-210 (238)
158 2lq6_A Bromodomain-containing 35.6 18 0.00063 25.4 2.0 32 79-110 17-50 (87)
159 3nis_A E3 ubiquitin-protein li 35.4 18 0.00061 25.4 1.9 31 144-175 10-44 (82)
160 4bbq_A Lysine-specific demethy 35.3 17 0.00057 26.6 1.8 84 80-175 8-94 (117)
161 3ny3_A E3 ubiquitin-protein li 35.3 18 0.0006 24.9 1.8 31 144-175 6-40 (75)
162 1y02_A CARP2, FYVE-ring finger 35.2 21 0.00072 26.8 2.4 34 20-53 17-52 (120)
163 3c6w_A P28ING5, inhibitor of g 35.1 22 0.00076 23.0 2.2 34 20-54 7-43 (59)
164 2k1p_A Zinc finger RAN-binding 34.9 16 0.00054 20.9 1.3 24 77-100 4-27 (33)
165 3h0g_L DNA-directed RNA polyme 34.8 14 0.00048 24.6 1.2 26 78-103 20-48 (63)
166 1joc_A EEA1, early endosomal a 34.6 26 0.00089 26.2 2.8 37 138-175 68-104 (125)
167 1vfy_A Phosphatidylinositol-3- 34.5 25 0.00085 23.6 2.5 36 140-176 12-47 (73)
168 2yqq_A Zinc finger HIT domain- 34.0 22 0.00075 23.1 2.0 24 79-105 12-35 (56)
169 4rxn_A Rubredoxin; electron tr 33.3 27 0.00091 22.5 2.3 44 36-89 3-46 (54)
170 3ask_A E3 ubiquitin-protein li 33.1 22 0.00074 29.7 2.3 34 141-176 176-209 (226)
171 2jmi_A Protein YNG1, ING1 homo 33.0 28 0.00097 24.7 2.6 34 20-54 24-60 (90)
172 2kwq_A Protein MCM10 homolog; 32.9 24 0.00083 25.3 2.3 40 36-89 15-57 (92)
173 3im4_C Dual specificity A kina 32.3 30 0.001 21.2 2.2 12 227-238 15-26 (45)
174 1wew_A DNA-binding family prot 32.3 32 0.0011 23.3 2.8 36 20-56 14-52 (78)
175 1wfk_A Zinc finger, FYVE domai 32.3 48 0.0017 23.1 3.8 37 138-175 8-44 (88)
176 2rmg_A Urocortin-2; CRF ligand 32.2 45 0.0015 19.9 2.9 27 212-238 10-36 (38)
177 3o7a_A PHD finger protein 13 v 31.9 34 0.0012 21.3 2.6 29 84-112 8-37 (52)
178 2ro1_A Transcription intermedi 31.6 15 0.00053 29.5 1.2 30 140-174 3-32 (189)
179 3c5k_A HD6, histone deacetylas 30.5 12 0.00043 27.5 0.4 59 21-88 23-83 (109)
180 3zyq_A Hepatocyte growth facto 29.9 25 0.00084 29.1 2.2 32 22-53 164-197 (226)
181 1wff_A Riken cDNA 2810002D23 p 29.1 27 0.00094 24.6 1.9 27 21-48 24-51 (85)
182 1x4u_A Zinc finger, FYVE domai 29.0 45 0.0015 22.9 3.1 38 138-176 13-50 (84)
183 1y02_A CARP2, FYVE-ring finger 28.8 30 0.001 25.9 2.2 33 78-110 18-52 (120)
184 3lqh_A Histone-lysine N-methyl 28.4 40 0.0014 27.0 3.2 32 80-111 3-39 (183)
185 2rsd_A E3 SUMO-protein ligase 28.1 50 0.0017 21.7 3.1 33 78-111 9-44 (68)
186 1dvp_A HRS, hepatocyte growth 28.1 27 0.00093 28.5 2.1 33 22-54 161-195 (220)
187 1x4s_A Protein FON, zinc finge 28.0 30 0.001 22.7 1.9 32 139-172 11-43 (59)
188 4gzn_C ZFP-57, zinc finger pro 27.7 32 0.0011 22.0 2.0 27 138-165 3-41 (60)
189 1e8j_A Rubredoxin; iron-sulfur 27.5 43 0.0015 21.2 2.6 44 36-89 3-46 (52)
190 1iym_A EL5; ring-H2 finger, ub 27.4 37 0.0013 20.5 2.3 35 138-173 4-38 (55)
191 2kiz_A E3 ubiquitin-protein li 27.2 36 0.0012 21.7 2.3 34 20-53 12-46 (69)
192 2a20_A Regulating synaptic mem 26.9 53 0.0018 21.6 2.9 36 137-173 7-42 (62)
193 3j20_Y 30S ribosomal protein S 26.1 44 0.0015 20.9 2.4 25 79-103 19-47 (50)
194 2k0a_A PRE-mRNA-splicing facto 26.1 35 0.0012 25.0 2.1 23 77-99 55-78 (109)
195 3uk3_C Zinc finger protein 217 25.8 32 0.0011 20.4 1.7 27 138-165 3-41 (57)
196 2kdx_A HYPA, hydrogenase/ureas 25.8 24 0.00081 26.0 1.2 24 138-162 72-96 (119)
197 1x4i_A Inhibitor of growth pro 25.3 50 0.0017 22.1 2.7 35 20-55 4-41 (70)
198 1bbo_A Human enhancer-binding 25.2 46 0.0016 19.6 2.4 11 155-165 28-38 (57)
199 1vd4_A Transcription initiatio 24.9 32 0.0011 21.4 1.6 25 21-45 13-48 (62)
200 1wen_A Inhibitor of growth fam 24.9 55 0.0019 21.9 2.9 50 20-89 14-66 (71)
201 2v3b_B Rubredoxin 2, rubredoxi 24.6 46 0.0016 21.3 2.3 44 36-89 3-46 (55)
202 1dvp_A HRS, hepatocyte growth 24.1 43 0.0015 27.3 2.6 36 140-176 162-197 (220)
203 2xqn_T Testin, TESS; metal-bin 23.8 60 0.0021 23.5 3.2 11 23-33 4-14 (126)
204 2kn9_A Rubredoxin; metalloprot 23.7 42 0.0014 23.4 2.1 45 35-89 26-70 (81)
205 3mhs_A Ubiquitin carboxyl-term 23.7 23 0.00077 32.1 0.9 61 80-151 49-110 (476)
206 1yk4_A Rubredoxin, RD; electro 23.4 51 0.0017 20.8 2.3 44 36-89 2-45 (52)
207 3zyq_A Hepatocyte growth facto 23.3 44 0.0015 27.4 2.6 36 140-176 165-200 (226)
208 1x5w_A Zinc finger protein 64, 22.4 59 0.002 20.2 2.6 28 138-166 8-47 (70)
209 2lcq_A Putative toxin VAPC6; P 22.1 33 0.0011 26.6 1.4 10 154-163 130-139 (165)
210 1x4j_A Ring finger protein 38; 22.1 26 0.00089 23.0 0.7 34 20-53 21-55 (75)
211 3s0r_A De novo designed helica 21.9 1.1E+02 0.0037 16.7 4.2 25 210-234 4-28 (30)
212 3mhs_A Ubiquitin carboxyl-term 21.8 14 0.00047 33.5 -1.0 61 22-89 48-108 (476)
213 2adr_A ADR1; transcription reg 21.8 53 0.0018 19.6 2.2 25 140-165 3-39 (60)
214 1x6e_A Zinc finger protein 24; 21.5 56 0.0019 20.5 2.4 28 138-166 13-52 (72)
215 2d8v_A Zinc finger FYVE domain 21.5 45 0.0015 22.4 1.8 32 138-175 7-39 (67)
216 1weu_A Inhibitor of growth fam 21.2 53 0.0018 23.3 2.2 34 77-111 34-70 (91)
217 2qdq_A Talin-1; dimerisation d 21.0 1.3E+02 0.0043 19.0 3.7 24 208-231 5-28 (50)
218 2lbm_A Transcriptional regulat 20.9 40 0.0014 26.0 1.7 34 137-175 61-94 (142)
219 1dx8_A Rubredoxin; electron tr 20.8 58 0.002 21.9 2.3 45 35-89 6-50 (70)
220 2lce_A B-cell lymphoma 6 prote 20.5 64 0.0022 20.3 2.5 28 137-165 15-54 (74)
221 1fre_A Nuclear factor XNF7; zi 20.3 56 0.0019 18.8 2.0 26 85-110 6-31 (42)
No 1
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=99.66 E-value=4.2e-17 Score=120.47 Aligned_cols=67 Identities=30% Similarity=0.641 Sum_probs=60.9
Q ss_pred CCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccCCce
Q 040047 42 CKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEI 113 (240)
Q Consensus 42 C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~ 113 (240)
++..||+.|+++|++|.|++||+|+|+|...+ .+.|++|++.+.+|+|+|..|+|+||+.||.+|..
T Consensus 15 ~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~-----~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 15 IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ-----VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp HHHHHHHHTSSSCSEECCSTTTTSCEEEECCS-----SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSSC
T ss_pred HHHHHhHHHHcCCceecCCCCCCCccEEeeCC-----CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCCc
Confidence 45689999999999999999999999998653 58999999999999999999999999999998754
No 2
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=99.42 E-value=2.8e-14 Score=105.28 Aligned_cols=66 Identities=29% Similarity=0.615 Sum_probs=58.2
Q ss_pred CCcccccccccCCceeeeCCCc-eeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 99 CDFDLHVQCAFLPEILIHDSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 99 C~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
++..+|..|+.+|..|+|+.|+ |+|+|.+.. .++|++|++.+. +|+|+|..|+|++|+.|+..+..
T Consensus 15 ~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~---------~~~C~~C~~~~~---~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 15 IEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ---------VYTCDKCEEEGT---IWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp HHHHHHHHTSSSCSEECCSTTTTSCEEEECCS---------SCCCTTTSCCCC---SCEEECTTTCCCCCHHHHHCSSC
T ss_pred HHHHHhHHHHcCCceecCCCCCCCccEEeeCC---------CeEeCCCCCcCC---CcEEEcCCCCCeEcHHhcCCCCc
Confidence 4568999999999999999996 999998752 479999999863 89999999999999999987765
No 3
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.23 E-value=4.2e-07 Score=88.51 Aligned_cols=95 Identities=20% Similarity=0.498 Sum_probs=33.9
Q ss_pred CCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccccccc--------c-CCCCCCcceEEeeccCCCC
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNASRAM--------Q-HTSHPMHHLTLVPTTTYSA 77 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p~~i--------~-h~~Hp~H~L~l~~~~~~~~ 77 (240)
|.+...... .+..|+.|+..|+| .+|+|..|++.+|+.|....... . ......|.+.....+
T Consensus 38 H~f~~~~~~--~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~---- 111 (674)
T 3pfq_A 38 HKFTARFFK--QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYS---- 111 (674)
T ss_dssp ------------------------------------------------------------------CCCCCEECCS----
T ss_pred ceEEeeeCC--CCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCC----
Confidence 665554443 67899999999998 47999999999999998753210 0 011124677665543
Q ss_pred CCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 78 GNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
....|+.|++.+.| ..|+|..|++.+|.+|...
T Consensus 112 ~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 112 SPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp SCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSS
T ss_pred CCCCCCccccccchhhcCccccccCCcchhhhhhhc
Confidence 36799999998654 5799999999999999964
No 4
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.16 E-value=2e-06 Score=62.00 Aligned_cols=51 Identities=20% Similarity=0.546 Sum_probs=40.2
Q ss_pred Cccccccccc-CCCCceEeeCCC-C---CcchhhhccccccccCCCC-CCcceEEeecc
Q 040047 21 NEYSCSACEL-IISGSAYGCWEC-K---FFLHEQCGNASRAMQHTSH-PMHHLTLVPTT 73 (240)
Q Consensus 21 ~~~~C~~C~~-~~~g~~Y~C~~C-~---f~lH~~Ca~~p~~i~h~~H-p~H~L~l~~~~ 73 (240)
..+.||+|.. +|.|.+|+|.+| | |||+..|....... ..| |.|+|+....+
T Consensus 20 ~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~--~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 20 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPIYRS 76 (82)
T ss_dssp SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEECSC
T ss_pred CcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcccc--CCCCCCCCEEEeeCC
Confidence 4679999985 899999999999 7 99999999864322 234 57888877654
No 5
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.12 E-value=1e-06 Score=65.72 Aligned_cols=46 Identities=28% Similarity=0.634 Sum_probs=38.0
Q ss_pred Cccccccccc-CCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047 21 NEYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT 72 (240)
Q Consensus 21 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~ 72 (240)
....||+|+. +|.|.+|+|..| ||||+..|.... . |+.|+|.....
T Consensus 30 ~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~---~---H~~H~f~~i~~ 77 (98)
T 2dip_A 30 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY---C---HLSHTFTFREK 77 (98)
T ss_dssp CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT---S---GGGSCEEECCS
T ss_pred CCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC---C---CCCCCeeEecC
Confidence 3489999986 799999999999 999999998865 2 56788877544
No 6
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=5.5e-06 Score=56.76 Aligned_cols=46 Identities=26% Similarity=0.539 Sum_probs=36.8
Q ss_pred cccccccc-CCCCceEeeCCC-CCcchhhhccccccc-cCCCCCCcceEEe
Q 040047 23 YSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAM-QHTSHPMHHLTLV 70 (240)
Q Consensus 23 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i-~h~~Hp~H~L~l~ 70 (240)
..||+|+. +|.|.+|+|.+| ||||+..|....... .|. +.|++...
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~--~~H~~~~~ 60 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHS--NQHQMKEY 60 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSC--TTCCEEEE
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCC--CCCCEEEE
Confidence 78999986 599999999999 999999999875433 332 35787754
No 7
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.83 E-value=6.7e-06 Score=80.00 Aligned_cols=100 Identities=22% Similarity=0.377 Sum_probs=32.5
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccCCcee---e---e----CCCceeeEEeecCC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFLPEIL---I---H----DSHFHSLNLSYALP 130 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~lP~~i---~---~----~~H~H~L~l~~~~~ 130 (240)
.|.|+..... ....|+.|+..+.| -.|+|..|++.+|..|....... . . +.-.|.+.....
T Consensus 37 ~H~f~~~~~~----~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~-- 110 (674)
T 3pfq_A 37 NHKFTARFFK----QPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY-- 110 (674)
T ss_dssp ---------------------------------------------------------------------CCCCCEECC--
T ss_pred CceEEeeeCC----CCCccccccccccccCCceeECCCCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCC--
Confidence 4666554321 36789999998765 46999999999999998642110 0 0 111244433222
Q ss_pred ccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 131 AAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 131 ~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
.....|+.|++.+.+-..-.|+|.+|++.+|.+|.....
T Consensus 111 ------~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~ 149 (674)
T 3pfq_A 111 ------SSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVP 149 (674)
T ss_dssp ------SSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSC
T ss_pred ------CCCCCCCccccccchhhcCccccccCCcchhhhhhhccC
Confidence 145699999998642103599999999999999985443
No 8
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.76 E-value=8.3e-06 Score=53.70 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=35.5
Q ss_pred CcccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047 21 NEYSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT 72 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~ 72 (240)
..+.||+|...+ |.+|+|.+| ||||+..|..... | .|++.....
T Consensus 5 ~~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~------H-~H~m~~~~~ 49 (52)
T 1tot_A 5 FVYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS------H-THKMVKWGL 49 (52)
T ss_dssp SCEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC------C-CSSEEEECS
T ss_pred CEEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC------C-CCceEEecC
Confidence 457899999886 889999999 8999999998632 4 578876543
No 9
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=97.45 E-value=8.6e-05 Score=47.88 Aligned_cols=42 Identities=21% Similarity=0.667 Sum_probs=33.9
Q ss_pred CCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 53 (240)
|.+...... .+..|+.|+..|+| .+|+|..|++.+|+.|...
T Consensus 1 H~F~~~~~~--~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCEeecCC--CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 334444433 78999999999998 4799999999999999985
No 10
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=49.80 Aligned_cols=44 Identities=23% Similarity=0.677 Sum_probs=37.4
Q ss_pred CCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047 8 HPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 8 H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 53 (240)
.+|.+...... .+..|+.|...|+| .+|+|..|++.+|+.|...
T Consensus 11 ~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 11 MPHRFKVYNYK--SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCCCEEECCCC--SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCCccEeEcCC--CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 35777776654 78999999999998 3799999999999999985
No 11
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.34 E-value=3.9e-05 Score=50.45 Aligned_cols=41 Identities=29% Similarity=0.656 Sum_probs=33.8
Q ss_pred CccccccCCCCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEEe
Q 040047 79 NFLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNLS 126 (240)
Q Consensus 79 ~~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l~ 126 (240)
.+.||.|++.+ |.+|+|..| +|||+..|.... .|.|++.-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~------~H~H~m~~~ 47 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK------SHTHKMVKW 47 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH------CCCSSEEEE
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCC------CCCCceEEe
Confidence 57899999985 899999999 999999998753 256877543
No 12
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=8.4e-05 Score=52.25 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=40.1
Q ss_pred cCCCCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047 5 HFSHPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 5 H~~H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p 54 (240)
+....|.+...... .+..|+.|...|+| .+|+|..|++.+|+.|....
T Consensus 13 ~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v 63 (74)
T 2db6_A 13 VNDKPHKFKDHFFK--KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYV 63 (74)
T ss_dssp SCSSBCCEEEEECS--SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGGG
T ss_pred ccCCCCceEEeeCC--CCcCchhcChhhccccCCccccCCCCCccChhHHhhC
Confidence 33445888877765 78999999999998 37999999999999999853
No 13
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=52.21 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=38.9
Q ss_pred cCCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047 5 HFSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 5 H~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~ 53 (240)
|....|.+...... .+..|+.|...|+|. +|+|..|+|.+|+.|...
T Consensus 13 ~~~~~H~F~~~~~~--~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 13 HYIKNHEFIATFFG--QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp ECGGGCCEEEECCS--SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred cccCCCceEeEeCC--CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 33445877776654 789999999999983 799999999999999985
No 14
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=8.6e-05 Score=50.72 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=34.8
Q ss_pred CccccccCCC-CCceeEEcCCC-CcccccccccCCceeeeCCCc--eeeEE
Q 040047 79 NFLCNACGEP-GSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF--HSLNL 125 (240)
Q Consensus 79 ~~~Cd~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~--H~L~l 125 (240)
...||+|+.. +.|.+|+|..| ||||+..|...... ...|. |++..
T Consensus 11 ~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~--~~~H~~~H~~~~ 59 (63)
T 2e5r_A 11 PVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHA--GGSHSNQHQMKE 59 (63)
T ss_dssp CSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCC--CSSSCTTCCEEE
T ss_pred CCCCcCCCCcceecceEEecCCCCchhHHHHHhCCCc--CCCCCCCCCEEE
Confidence 3789999986 88999999999 99999999876532 23343 76643
No 15
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=97.28 E-value=0.00014 Score=49.95 Aligned_cols=43 Identities=28% Similarity=0.652 Sum_probs=37.3
Q ss_pred CCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 53 (240)
+|.+...... .+..|+.|...|+| .+|+|..|+|.+|+.|...
T Consensus 13 ~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 13 QHNFEVWTAT--TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCEEEEECS--SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CcccEeeeCC--CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 5777776655 78999999999998 3799999999999999885
No 16
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=97.25 E-value=0.00017 Score=49.30 Aligned_cols=43 Identities=21% Similarity=0.637 Sum_probs=36.6
Q ss_pred CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~ 53 (240)
+|.+...... .+..|+.|+..|+|. +|+|..|+|..|+.|+..
T Consensus 9 ~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 9 SHRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp ECCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CceEEeEeCC--CCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 4777766654 789999999999873 799999999999999985
No 17
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00026 Score=51.03 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=39.4
Q ss_pred CCCCCCCeeeeecCCCcccccccccCCCC---ceEeeCCCCCcchhhhcccc
Q 040047 6 FSHPHNLRIYQVQHGNEYSCSACELIISG---SAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~p 54 (240)
+.-+|.+...... .+..|+.|...|+| .+|+|..|++.+|+.|....
T Consensus 14 ~~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v 63 (85)
T 2eli_A 14 PRSKHKFKIHTYG--SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINV 63 (85)
T ss_dssp TTTSCCCEEECCS--SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTS
T ss_pred CCCCcccEeeeCC--CCcCCcccCccccccccCCCcCCCcCCccCHhHHhhc
Confidence 3345888777665 78999999999998 47999999999999999853
No 18
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=97.21 E-value=0.00024 Score=46.14 Aligned_cols=42 Identities=21% Similarity=0.584 Sum_probs=35.8
Q ss_pred CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
.|.+...... .+..|+.|+..++ .+|+|..|++..|+.|...
T Consensus 3 ~H~F~~~~~~--~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 3 THNFARKTFL--KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CCCCEEECCS--SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred CceeEeEeCC--CCcCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence 3666665554 7899999999998 7999999999999999985
No 19
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.20 E-value=0.00018 Score=53.41 Aligned_cols=43 Identities=23% Similarity=0.528 Sum_probs=34.4
Q ss_pred CccccccCC-CCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEEe
Q 040047 79 NFLCNACGE-PGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNLS 126 (240)
Q Consensus 79 ~~~Cd~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l~ 126 (240)
...||.|+. .+.|.+|+|..| ||||+..|..... |. .|++...
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H~--~H~f~~i 75 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---HL--SHTFTFR 75 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---GG--GSCEEEC
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---CC--CCCeeEe
Confidence 489999997 578999999999 9999999987652 32 3766543
No 20
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=97.19 E-value=0.00012 Score=51.76 Aligned_cols=46 Identities=22% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047 6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~ 53 (240)
....|.+...... .+..|+.|...|+|. +|.|..|+|.+|+.|...
T Consensus 20 ~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 20 HVKCHEFTATFFP--QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp ESSSCEEEEECCS--SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred cCCCCccEEEcCC--CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 3445776666554 789999999999973 799999999999999985
No 21
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=97.13 E-value=0.00025 Score=47.65 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=37.0
Q ss_pred CCCCCee-eeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047 8 HPHNLRI-YQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 8 H~H~L~l-~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
.+|.+.. .... .+..|+.|+..|+..+|+|..|+|..|+.|.+..
T Consensus 9 ~~H~F~~~~~~~--~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~v 54 (59)
T 1rfh_A 9 EGHRFVELALRG--GPGWCDLCGREVLRQALRCANCKFTCHSECRSLI 54 (59)
T ss_dssp SSCCCEECCCSS--CCEECTTTCSEECSCCEECTTTSCEECHHHHTTC
T ss_pred CCCcCeeeeccC--CCeEchhcchhhhhCccEeCCCCCeEehhhhhhC
Confidence 4577766 5544 7899999999886668999999999999999853
No 22
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.11 E-value=0.00035 Score=50.15 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=37.1
Q ss_pred CccccccCC-CCCceeEEcCCC-C---cccccccccCCceeeeCCCc--eeeEEeec
Q 040047 79 NFLCNACGE-PGSAFSFCCPLC-D---FDLHVQCAFLPEILIHDSHF--HSLNLSYA 128 (240)
Q Consensus 79 ~~~Cd~C~~-~~~g~~Y~C~~C-~---f~lH~~Ca~lP~~i~~~~H~--H~L~l~~~ 128 (240)
.+.||.|+. .+.|.+|+|..| + |||+..|...-.. ...|. |++.....
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~--~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE--TDIHKEDHQLEPIYR 75 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC--CSSCCSSSCEEEECS
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc--cCCCCCCCCEEEeeC
Confidence 679999997 578999999999 7 9999999976422 23342 88876654
No 23
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.09 E-value=0.0003 Score=45.58 Aligned_cols=42 Identities=17% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
+|.+...+.. ...|+.|++.|+ .+|+|.+|+|..|.+|+...
T Consensus 4 ~HrF~~~t~~---~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~v 45 (49)
T 1kbe_A 4 THRFSTKSWL---SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKEA 45 (49)
T ss_dssp CCCEEEECCS---SCCCSSSCCSSC-CEEEETTTTEEESSSCTTTS
T ss_pred CcccCccCCC---CcCccccCceeE-CcCCCCCCCCccchhhcCcC
Confidence 4666665543 489999999998 46999999999999999843
No 24
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=97.03 E-value=0.0005 Score=48.08 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=36.9
Q ss_pred CCCCCee-eeecCCCcccccccccCCCCceEeeCCCCCcchhhhcccc
Q 040047 8 HPHNLRI-YQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 8 H~H~L~l-~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
.+|.+.. .... .+..|+.|+..|...+|+|..|+|..|+.|....
T Consensus 22 ~~H~F~~~~~~~--~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 22 EGHRFVELALRG--GPGWCDLCGREVLRQALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp SSCCCEECCCCS--SCCBCTTTSSBCSSCCEECTTSSCEECTGGGGGC
T ss_pred CCCccceeecCC--CCcchhhhhHHHHhCcCccCCCCCeechhhhccC
Confidence 4577666 5443 7899999999986668999999999999999853
No 25
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=96.70 E-value=0.00042 Score=49.98 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=34.4
Q ss_pred CCCeeeeecCCCcccccccccCCCCc-----eEeeCCCCCcchhhhcc
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISGS-----AYGCWECKFFLHEQCGN 52 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g~-----~Y~C~~C~f~lH~~Ca~ 52 (240)
|.+...... .+..|+.|+..|||. +|.|..|+|.+|+.|..
T Consensus 25 H~F~~~~~~--~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 25 HEFIPTLYH--FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp EEEEEECCS--SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred cceEeEcCC--CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 555444443 789999999999984 89999999999999998
No 26
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=96.51 E-value=0.0025 Score=41.19 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=31.9
Q ss_pred cceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047 65 HHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
|.|+..+.. ...|+.|++.+. +.|+|.+|+|..|.+|+..
T Consensus 5 HrF~~~t~~-----~t~C~~C~k~i~-~G~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 5 HRFSTKSWL-----SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCEEEECCS-----SCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred cccCccCCC-----CcCccccCceeE-CcCCCCCCCCccchhhcCc
Confidence 677665431 378999999886 4589999999999999974
No 27
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=96.48 E-value=0.002 Score=41.22 Aligned_cols=33 Identities=21% Similarity=0.532 Sum_probs=28.7
Q ss_pred CCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 78 GNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.+..|+.|++.+.| ..|+|.+|++.+|..|+..
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 46899999998765 5799999999999999864
No 28
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=96.29 E-value=0.0042 Score=42.20 Aligned_cols=43 Identities=19% Similarity=0.466 Sum_probs=34.9
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. .+..|+.|+..+.| ..|+|..|++.+|.+|+..
T Consensus 12 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 12 PHRFKVYNYK----SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCCEEECCCC----SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCccEeEcCC----CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 5788776542 47899999998765 5699999999999999864
No 29
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=96.23 E-value=0.0037 Score=40.35 Aligned_cols=42 Identities=19% Similarity=0.451 Sum_probs=33.9
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|++.+. ..|+|..|++.+|.+|...
T Consensus 3 ~H~F~~~~~~----~pt~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 3 THNFARKTFL----KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CCCCEEECCS----SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred CceeEeEeCC----CCcCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence 4677665442 4789999999876 6899999999999999864
No 30
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.006 Score=41.13 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=29.9
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
....|++|++.+.-+ .+.|+|.+|++..|..|...-
T Consensus 18 ~~~~C~~Cg~~i~~g-kq~~kC~dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 18 KPESCVPCGKRIKFG-KLSLKCRDCRVVSHPECRDRC 53 (61)
T ss_dssp SCEECTTTCCEECTT-CEEEEESSSSCEECGGGGGGS
T ss_pred CCcccccccCEEEEe-eEeeECCCCCCeEchhHhhcC
Confidence 347999999988544 589999999999999996543
No 31
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=96.19 E-value=0.0034 Score=41.96 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=34.6
Q ss_pred CcceEE-eeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047 64 MHHLTL-VPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l-~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|.. ... .....|+.|+..+....|+|.+|+|.+|.+|...
T Consensus 10 ~H~F~~~~~~----~~pt~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 10 GHRFVELALR----GGPGWCDLCGREVLRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp SCCCEECCCS----SCCEECTTTCSEECSCCEECTTTSCEECHHHHTT
T ss_pred CCcCeeeecc----CCCeEchhcchhhhhCccEeCCCCCeEehhhhhh
Confidence 477776 443 2478999999988666799999999999999864
No 32
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.12 E-value=0.0089 Score=42.84 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=35.5
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|+..+.| ..|+|..|++.+|..|+..
T Consensus 17 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 17 KHKFKIHTYG----SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCCEEECCS----SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CcccEeeeCC----CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 5888876543 47899999998765 5799999999999999964
No 33
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=96.11 E-value=0.0038 Score=42.14 Aligned_cols=43 Identities=26% Similarity=0.545 Sum_probs=34.1
Q ss_pred CCCCeeeeecCCCcccccccccCC-CC-ceEeeCCCCCcchhhhccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELII-SG-SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~-~g-~~Y~C~~C~f~lH~~Ca~~ 53 (240)
+|.+.-.+.. ....|+.|+..| +| .+|+|.+|++..|+.|-+.
T Consensus 8 ~H~F~~kt~~--~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 8 LHDFVSKTVI--KPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CCCEEEEECC--SCEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred ceeEEeeecc--CCcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence 4665555543 679999998887 45 4799999999999999874
No 34
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=96.10 E-value=0.0052 Score=41.88 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=35.0
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|+..+.| ..|+|.+|+|.+|..|+..
T Consensus 13 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 13 QHNFEVWTAT----TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCEEEEECS----SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CcccEeeeCC----CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 4788776543 47899999998865 5699999999999999853
No 35
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=96.09 E-value=0.0041 Score=42.20 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=34.3
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...... ....|+.|+..+.| ..|+|..|++.+|.+|+..
T Consensus 9 ~H~F~~~~~~----~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 9 SHRFKVYNYM----SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp ECCEEEECCS----SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CceEEeEeCC----CCCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 4777765442 47799999998765 5799999999999999964
No 36
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0056 Score=42.72 Aligned_cols=43 Identities=19% Similarity=0.403 Sum_probs=36.0
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|++.+.| ..|+|..|++.+|.+|+..
T Consensus 17 ~H~F~~~~f~----~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 17 PHKFKDHFFK----KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp BCCEEEEECS----SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCceEEeeCC----CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 5888877653 47899999998876 5799999999999999863
No 37
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=95.98 E-value=0.0059 Score=42.51 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=34.5
Q ss_pred CcceEE-eeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047 64 MHHLTL-VPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l-~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|.. ... .....|+.|+..+....|+|..|+|.+|.+|..+
T Consensus 23 ~H~F~~~~~~----~~pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 23 GHRFVELALR----GGPGWCDLCGREVLRQALRCANCKFTCHSECRSL 66 (72)
T ss_dssp SCCCEECCCC----SSCCBCTTTSSBCSSCCEECTTSSCEECTGGGGG
T ss_pred CCccceeecC----CCCcchhhhhHHHHhCcCccCCCCCeechhhhcc
Confidence 477776 433 2478999999988666799999999999999864
No 38
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.93 E-value=0.0072 Score=43.08 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=35.2
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...... ....|+.|+..+.| ..|+|..|+|.+|..|...
T Consensus 17 ~H~F~~~~~~----~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 17 NHEFIATFFG----QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp GCCEEEECCS----SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCceEeEeCC----CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 5788766542 47899999998865 4799999999999999975
No 39
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=95.88 E-value=0.007 Score=42.56 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=35.3
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|+..+.| ..|.|..|+|.+|..|...
T Consensus 23 ~H~F~~~~f~----~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 23 CHEFTATFFP----QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEEEEECCS----SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCccEEEcCC----CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 5888776542 47899999998764 5699999999999999864
No 40
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=95.13 E-value=0.0091 Score=42.88 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCCcceEEeeccCCCCCCccccccCCCCCce-----eEEcCCCCccccccccc
Q 040047 62 HPMHHLTLVPTTTYSAGNFLCNACGEPGSAF-----SFCCPLCDFDLHVQCAF 109 (240)
Q Consensus 62 Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~-----~Y~C~~C~f~lH~~Ca~ 109 (240)
+..|.|...... ....|+.|+..+.|+ .|.|..|+|.+|.+|..
T Consensus 22 ~~~H~F~~~~~~----~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 22 HKGHEFIPTLYH----FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp ETTEEEEEECCS----SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred cCCcceEeEcCC----CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 346787766442 478999999987653 89999999999999987
No 41
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.17 E-value=0.062 Score=40.02 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=56.7
Q ss_pred CCccccccCCCCC-ceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCC-ccceecccccccccCCcce
Q 040047 78 GNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYE-SSSYVCDICHKQLDQKCFW 155 (240)
Q Consensus 78 ~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~-~~~~~C~vC~~~~~~~~~~ 155 (240)
....|.+|+..+. .....|..|.-.+|+.|..++... + ... .+. ..-..|.+|++..+. ..
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~--------~---~~~----~W~C~~C~~C~~C~~~~~~--~~ 68 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP--------L---KRA----GWQCPECKVCQNCKQSGED--SK 68 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT--------T---TST----TCCCTTTCCCTTTCCCSCC--TT
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc--------c---ccc----CccCCcCCcccccCccCCC--CC
Confidence 4678999998764 345789999999999999875321 1 000 000 012357778776542 35
Q ss_pred eEEeCCCCeeeecccccCccc
Q 040047 156 SYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 156 ~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
...|..|+-.+|..|+..+..
T Consensus 69 ll~Cd~C~~~yH~~Cl~ppl~ 89 (111)
T 2ysm_A 69 MLVCDTCDKGYHTFCLQPVMK 89 (111)
T ss_dssp EEECSSSCCEEEGGGSSSCCS
T ss_pred eeECCCCCcHHhHHhcCCccc
Confidence 899999999999999986543
No 42
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.81 E-value=0.033 Score=53.10 Aligned_cols=44 Identities=25% Similarity=0.798 Sum_probs=37.0
Q ss_pred CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p 54 (240)
.|.+...... .+..|+.|+..++|. +|+|..|+|.+|+.|....
T Consensus 518 ~H~F~~~~~~--~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 518 GHDFQMFSFE--ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564 (587)
T ss_dssp GCCEEEECCS--SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred CCceeEEeCC--CCcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence 3777766554 789999999998874 7999999999999999853
No 43
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=93.53 E-value=0.043 Score=49.64 Aligned_cols=43 Identities=26% Similarity=0.840 Sum_probs=34.9
Q ss_pred CCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p 54 (240)
|.+..... ..+..|+.|+..++|. +|+|..|++.+|+.|....
T Consensus 347 h~f~~~~~--~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~ 392 (406)
T 2vrw_B 347 HDFQMFSF--EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392 (406)
T ss_dssp CCEEEECC--SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred CCCccccC--CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence 55555443 3789999999998874 7999999999999999853
No 44
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=93.48 E-value=0.035 Score=39.76 Aligned_cols=37 Identities=24% Similarity=0.581 Sum_probs=29.8
Q ss_pred cceecccccccccCCc-ceeEEeCCCCeeeecccccCc
Q 040047 138 SSYVCDICHKQLDQKC-FWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~-~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
...+|.+|++.+.... ...|+|.+|...+|.+|....
T Consensus 37 ~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 4679999999976421 468999999999999997543
No 45
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.55 E-value=0.35 Score=35.79 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=53.9
Q ss_pred CcccccccccCCC-CceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCC-ceeEEcCC
Q 040047 21 NEYSCSACELIIS-GSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGS-AFSFCCPL 98 (240)
Q Consensus 21 ~~~~C~~C~~~~~-g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~-g~~Y~C~~ 98 (240)
....|..|+.... .....|..|.-.+|..|...+... . +.-.+.- ..=..|.+|++... .....|..
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~---~-~~~~W~C-------~~C~~C~~C~~~~~~~~ll~Cd~ 74 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP---L-KRAGWQC-------PECKVCQNCKQSGEDSKMLVCDT 74 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT---T-TSTTCCC-------TTTCCCTTTCCCSCCTTEEECSS
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc---c-cccCccC-------CcCCcccccCccCCCCCeeECCC
Confidence 5678999988753 234899999999999999865321 0 0000000 01125677776653 46899999
Q ss_pred CCcccccccccCC
Q 040047 99 CDFDLHVQCAFLP 111 (240)
Q Consensus 99 C~f~lH~~Ca~lP 111 (240)
|+-.+|..|...|
T Consensus 75 C~~~yH~~Cl~pp 87 (111)
T 2ysm_A 75 CDKGYHTFCLQPV 87 (111)
T ss_dssp SCCEEEGGGSSSC
T ss_pred CCcHHhHHhcCCc
Confidence 9999999998754
No 46
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=91.91 E-value=0.11 Score=38.96 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=53.1
Q ss_pred cccccCCCC--------CceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCC-ccceecccccccccC
Q 040047 81 LCNACGEPG--------SAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYE-SSSYVCDICHKQLDQ 151 (240)
Q Consensus 81 ~Cd~C~~~~--------~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~-~~~~~C~vC~~~~~~ 151 (240)
.|+.|.... .+....|..|.-..|+.|+.++..+. ..+... ... ..-..|.+|++..+.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~--------~~~~~~----~W~C~~C~~C~~C~~~~~~ 70 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT--------EAVKTY----KWQCIECKSCILCGTSEND 70 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH--------HHHHHT----TCCCGGGCCCTTTTCCTTT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh--------hccCCC----ccCccccCccCcccccCCC
Confidence 588886532 24668899999999999997653211 000100 000 011367888876432
Q ss_pred CcceeEEeCCCCeeeecccccCccc
Q 040047 152 KCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 152 ~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
+....|..|+-.+|..|+..+..
T Consensus 71 --~~ll~Cd~C~~~yH~~Cl~ppl~ 93 (114)
T 2kwj_A 71 --DQLLFCDDCDRGYHMYCLNPPVA 93 (114)
T ss_dssp --TTEEECSSSCCEEETTTSSSCCS
T ss_pred --CceEEcCCCCccccccccCCCcc
Confidence 56889999999999999986543
No 47
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.78 E-value=0.11 Score=38.81 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=55.0
Q ss_pred CccccccCCCC-------CceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccC
Q 040047 79 NFLCNACGEPG-------SAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQ 151 (240)
Q Consensus 79 ~~~Cd~C~~~~-------~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~ 151 (240)
...|..|.... .+....|..|+-.+|+.|+.+...+.... ....+. - ..-..|.+|++....
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~----~~~~W~--C-----~~C~~C~vC~~~~~~ 73 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRV----KALRWQ--C-----IECKTCSSCRDQGKN 73 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHH----HTSCCC--C-----TTTCCBTTTCCCCCT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHh----hccccc--c-----ccCCccccccCcCCC
Confidence 45788886542 24678999999999999997632211000 000010 0 122368888876433
Q ss_pred CcceeEEeCCCCeeeecccccCccc
Q 040047 152 KCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 152 ~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
. .....|..|+-.+|..|...+..
T Consensus 74 ~-~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 74 A-DNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp T-CCCEECTTTCCEECGGGCSSCCS
T ss_pred c-cceEEcCCCCCeeecccCCCCCC
Confidence 3 46889999999999999876543
No 48
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=91.52 E-value=0.11 Score=48.20 Aligned_cols=44 Identities=23% Similarity=0.549 Sum_probs=35.8
Q ss_pred CCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhcccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~p 54 (240)
+|.+...... .+..|+.|+..++|. +|+|..|++.+|+.|....
T Consensus 209 ~h~f~~~~~~--~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~v 255 (463)
T 3cxl_A 209 IHNFKVHTFR--GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMV 255 (463)
T ss_dssp CCCEEEECCS--SCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTTS
T ss_pred CcceEEeecC--CCCcchhhhhhhhhHHhcCeeccccCccccccccccc
Confidence 3665555544 789999999999874 7999999999999998753
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=89.80 E-value=0.17 Score=37.99 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=50.8
Q ss_pred cccccccCC--------CCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCc------cccccCCCC
Q 040047 24 SCSACELII--------SGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNF------LCNACGEPG 89 (240)
Q Consensus 24 ~C~~C~~~~--------~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~------~Cd~C~~~~ 89 (240)
.|+.|.... .+..-.|..|.-.+|..|...+..+. ..++. +.+ .|.+|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~---------~~~~~-----~~W~C~~C~~C~~C~~~~ 68 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMT---------EAVKT-----YKWQCIECKSCILCGTSE 68 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHH---------HHHHH-----TTCCCGGGCCCTTTTCCT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhh---------hccCC-----CccCccccCccCcccccC
Confidence 588885432 12458999999999999998653221 01111 123 577777764
Q ss_pred -CceeEEcCCCCcccccccccCC
Q 040047 90 -SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 90 -~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.+....|..|+-.+|..|...|
T Consensus 69 ~~~~ll~Cd~C~~~yH~~Cl~pp 91 (114)
T 2kwj_A 69 NDDQLLFCDDCDRGYHMYCLNPP 91 (114)
T ss_dssp TTTTEEECSSSCCEEETTTSSSC
T ss_pred CCCceEEcCCCCccccccccCCC
Confidence 3678899999999999998743
No 50
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.04 E-value=0.27 Score=35.48 Aligned_cols=84 Identities=15% Similarity=0.300 Sum_probs=52.4
Q ss_pred CcccccccccC-CCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC-CCceeEEcCC
Q 040047 21 NEYSCSACELI-ISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP-GSAFSFCCPL 98 (240)
Q Consensus 21 ~~~~C~~C~~~-~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~-~~g~~Y~C~~ 98 (240)
+...|+.|.+. .....-.|..|+..|+..|....-.-..++ ..|.|+..... ....... |... .....|.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~~h~l~~~~~~-~~~~~~~---C~~H~~e~l~~fC~~ 76 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-TGHRLIEPIPD-SHIRGLM---CLEHEDEKVNMYCVT 76 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-TTCCBSSCCCS-CCSSCCC---CSSCSSSCCCEEETT
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-CCCeeeccccc-cCccCCc---CcCcCCCcceEECCC
Confidence 35789999864 345578999999999999988521111111 14555421110 0112233 4544 2456789999
Q ss_pred CCccccccccc
Q 040047 99 CDFDLHVQCAF 109 (240)
Q Consensus 99 C~f~lH~~Ca~ 109 (240)
|+.-++..|..
T Consensus 77 ~~~~iC~~C~~ 87 (101)
T 2jun_A 77 DDQLICALCKL 87 (101)
T ss_dssp TTEEECHHHHH
T ss_pred CCCccchhcCC
Confidence 99999999975
No 51
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=87.62 E-value=0.33 Score=46.08 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=35.1
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.|...+.. ....|+.|+..+.| ..|+|..|++.+|..|...
T Consensus 518 ~H~F~~~~~~----~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 518 GHDFQMFSFE----ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp GCCEEEECCS----SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CCceeEEeCC----CCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 5788876542 47899999998644 4699999999999999974
No 52
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=86.21 E-value=0.41 Score=34.10 Aligned_cols=43 Identities=21% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCCCeeeeecCCCcccccccccCCCC----ceEeeCCCCCcchhhhccc
Q 040047 9 PHNLRIYQVQHGNEYSCSACELIISG----SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 9 ~H~L~l~~~~~~~~~~C~~C~~~~~g----~~Y~C~~C~f~lH~~Ca~~ 53 (240)
.|..+.-+.. ...+|..|++.+.+ ..|+|.=|...+|..|...
T Consensus 27 ~H~WveGNl~--~~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~ 73 (84)
T 1r79_A 27 PHQWLEGNLP--VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES 73 (84)
T ss_dssp CCCEEESCCC--TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred eeeEEccCCC--CCCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHh
Confidence 3554443332 45799999998743 3699999999999999874
No 53
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=84.92 E-value=0.71 Score=41.48 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=33.6
Q ss_pred CcceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 64 MHHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
.|.+...+. .....|+.|+..+.| -.|+|..|++.+|..|...
T Consensus 346 ~h~f~~~~~----~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 346 GHDFQMFSF----EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp GCCEEEECC----SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccC----CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 466665543 247899999998754 5699999999999999863
No 54
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.19 E-value=0.57 Score=34.84 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=50.8
Q ss_pred cccccccccC------C-CCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCC-CCCccccccCCCC--Cc
Q 040047 22 EYSCSACELI------I-SGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYS-AGNFLCNACGEPG--SA 91 (240)
Q Consensus 22 ~~~C~~C~~~------~-~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~-~~~~~Cd~C~~~~--~g 91 (240)
.-.|+.|... . .+....|..|+-.+|.+|......+.- .+....+. ..=..|.+|+... .+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~---------~~~~~~W~C~~C~~C~vC~~~~~~~~ 75 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTV---------RVKALRWQCIECKTCSSCRDQGKNAD 75 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHH---------HHHTSCCCCTTTCCBTTTCCCCCTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHH---------HhhccccccccCCccccccCcCCCcc
Confidence 4578888543 1 234699999999999999985321110 00000000 0112577777654 25
Q ss_pred eeEEcCCCCcccccccccCC
Q 040047 92 FSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 92 ~~Y~C~~C~f~lH~~Ca~lP 111 (240)
....|..|+-.+|..|...|
T Consensus 76 ~ll~Cd~C~~~yH~~Cl~p~ 95 (112)
T 3v43_A 76 NMLFCDSCDRGFHMECCDPP 95 (112)
T ss_dssp CCEECTTTCCEECGGGCSSC
T ss_pred ceEEcCCCCCeeecccCCCC
Confidence 78899999999999997543
No 55
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=81.62 E-value=3 Score=30.92 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCccccccCCCCCceeEEcC--CCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccCCcce
Q 040047 78 GNFLCNACGEPGSAFSFCCP--LCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFW 155 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~--~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~ 155 (240)
....|.+|+. .|....|. .|...+|..|..+..+.. + - ++ -..-.|.+|++. .
T Consensus 14 ~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~--g----~--W~---------Cp~c~C~~C~k~------~ 68 (107)
T 4gne_A 14 HEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLNLTQPPY--G----K--WE---------CPWHQCDECSSA------A 68 (107)
T ss_dssp SCSSCTTTCC--CSEEEECCSTTCCCEECTGGGTCSSCCS--S----C--CC---------CGGGBCTTTCSB------C
T ss_pred CCCCCCcCCC--CCcEeEECCCCCCcccccccCcCCcCCC--C----C--EE---------CCCCCCCcCCCC------C
Confidence 4678999994 36788899 899999999987432100 0 0 00 012345566664 3
Q ss_pred eEEeCCCCeeeecccccCccc
Q 040047 156 SYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 156 ~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.|+|..|...+|..|......
T Consensus 69 ~~~C~~Cp~sfC~~c~~g~l~ 89 (107)
T 4gne_A 69 VSFCEFCPHSFCKDHEKGALV 89 (107)
T ss_dssp CEECSSSSCEECTTTCTTSCE
T ss_pred CcCcCCCCcchhhhccCCcce
Confidence 599999999999999876654
No 56
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=81.37 E-value=0.93 Score=41.81 Aligned_cols=42 Identities=21% Similarity=0.511 Sum_probs=33.3
Q ss_pred cceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047 65 HHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 110 (240)
|.|...+.. ....|+.|+..+.| ..|+|..|++.+|..|...
T Consensus 210 h~f~~~~~~----~pt~C~~C~~~l~g~~~qg~~C~~C~~~~Hk~C~~~ 254 (463)
T 3cxl_A 210 HNFKVHTFR----GPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKM 254 (463)
T ss_dssp CCEEEECCS----SCCBCTTTCCBCCSSSCCEEEETTTCCEECHHHHTT
T ss_pred cceEEeecC----CCCcchhhhhhhhhHHhcCeeccccCcccccccccc
Confidence 666655432 47899999998754 3799999999999999864
No 57
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.46 E-value=2.1 Score=28.34 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=30.1
Q ss_pred cceeccccccccc-CCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLD-QKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~-~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|.+|+..-+ .. .....|..|+-.+|..|...+..
T Consensus 5 ~~~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p~l~ 43 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTPHID 43 (66)
T ss_dssp CCCCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCCccc
Confidence 5679999998632 22 56899999999999999987543
No 58
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.39 E-value=2.2 Score=28.12 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=30.7
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
...+|.+|++..+.. ...-.|..|..=+|..|+.....
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~ 42 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPA 42 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChh
Confidence 467899999986544 56789999998899999977653
No 59
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=78.87 E-value=1.1 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.540 Sum_probs=35.6
Q ss_pred CccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccc
Q 040047 79 NFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQL 149 (240)
Q Consensus 79 ~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~ 149 (240)
...|.+|+.. +....|..|+..+|..|...|.. ..+ .+.|.|..|....
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~-------------~~P-------~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGT-------------SRP-------GTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTC-------------CCC-------SSSCCCTTTTTCC
T ss_pred CCCcCCCCCC--CeEEECCCCCCceecccCCCccC-------------cCC-------CCCEECccccCCC
Confidence 5679999964 45788999999999999765421 111 2568999997643
No 60
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.43 E-value=1.3 Score=29.33 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=37.7
Q ss_pred CCCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccc
Q 040047 77 AGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQ 148 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~ 148 (240)
.....|.+|+.. +....|..|+-.+|..|...|.+ ..+ .+.|.|..|.+.
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~-------------~~p-------~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDME-------------KAP-------EGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCC-------------SCC-------CSSCCCTTGGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCC-------------CCC-------CCceECcccccc
Confidence 346789999974 57788999999999999886521 111 257899999775
No 61
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.27 E-value=2 Score=29.29 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCCeeeeecCCCcccccccccCCCC-ceEeeCCCCCcchhhhccccc
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISG-SAYGCWECKFFLHEQCGNASR 55 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca~~p~ 55 (240)
-|-+......+....|..|+.+..| ..-.|..|+--+|..|+.++.
T Consensus 6 ~P~~~~~~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 6 MAYVIRDEWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp SSSEEECSSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSS
T ss_pred CCCccccccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCc
Confidence 3444433223467889999888665 468999999999999998653
No 62
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.21 E-value=1.5 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=29.8
Q ss_pred cceeccccccccc-CCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLD-QKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~-~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|++..+ .. .....|..|+..+|..|...+.
T Consensus 15 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~ 52 (71)
T 2ku3_A 15 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPY 52 (71)
T ss_dssp SSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSS
T ss_pred CCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCc
Confidence 5679999998642 22 5688999999999999998764
No 63
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=77.92 E-value=6.8 Score=28.92 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=48.4
Q ss_pred CCcccccccccCCCCceEeeC--CCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCc-----cccccCCCCCce
Q 040047 20 GNEYSCSACELIISGSAYGCW--ECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNF-----LCNACGEPGSAF 92 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~--~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~-----~Cd~C~~~~~g~ 92 (240)
+....|..|+.. |....|. .|+..+|..|..+.. + | .+.+ .|..|++..
T Consensus 13 ~~~~~C~~C~~~--G~ll~CD~~~Cp~~fH~~Cl~L~~-~-----P-------------~g~W~Cp~c~C~~C~k~~--- 68 (107)
T 4gne_A 13 MHEDYCFQCGDG--GELVMCDKKDCPKAYHLLCLNLTQ-P-----P-------------YGKWECPWHQCDECSSAA--- 68 (107)
T ss_dssp SSCSSCTTTCCC--SEEEECCSTTCCCEECTGGGTCSS-C-----C-------------SSCCCCGGGBCTTTCSBC---
T ss_pred CCCCCCCcCCCC--CcEeEECCCCCCcccccccCcCCc-C-----C-------------CCCEECCCCCCCcCCCCC---
Confidence 466789999843 5678999 899999999987321 1 1 1233 455666543
Q ss_pred eEEcCCCCcccccccccCC
Q 040047 93 SFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 93 ~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.|..|...+|..|..-.
T Consensus 69 ~~~C~~Cp~sfC~~c~~g~ 87 (107)
T 4gne_A 69 VSFCEFCPHSFCKDHEKGA 87 (107)
T ss_dssp CEECSSSSCEECTTTCTTS
T ss_pred CcCcCCCCcchhhhccCCc
Confidence 4899999999999987544
No 64
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.02 E-value=2.3 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=28.5
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.....|.+|++. +-...|..|+-.+|..|+..+..
T Consensus 7 ~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl~ 41 (56)
T 2yql_A 7 GHEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLK 41 (56)
T ss_dssp SSCCSCSSSCCS-----SCCEECSSSSCEECSSSSSSCCC
T ss_pred CCCCCCccCCCC-----CeEEEcCCCCcceECccCCCCcC
Confidence 456789999985 34778999999999999986543
No 65
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=76.57 E-value=1.5 Score=30.04 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=28.4
Q ss_pred CcccccccccCC---CCceEeeCCCCCcchhhhcccc
Q 040047 21 NEYSCSACELII---SGSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 21 ~~~~C~~C~~~~---~g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
....|..|+... .+....|..|+.-+|..|...+
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC
Confidence 678999998764 2457999999999999999865
No 66
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=76.30 E-value=5 Score=24.22 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040047 211 DPVLEAQLELQRLQLEMQMAQELAKMMSS 239 (240)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
--+|+.-.||+|++.+.+.|..+-++|-+
T Consensus 11 FHlLR~miemar~e~~~qqA~~NR~~ld~ 39 (40)
T 2rmf_A 11 FHLLRTLLELARTQSQRERAEQNRIIFDS 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 35789999999999999999999888864
No 67
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.56 E-value=2.7 Score=30.12 Aligned_cols=51 Identities=20% Similarity=0.513 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC
Q 040047 19 HGNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP 88 (240)
Q Consensus 19 ~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~ 88 (240)
.+....|..|+.. |....|..|+..+|..|...|. . ..| .+.|.|..|...
T Consensus 22 d~n~~~C~vC~~~--g~LL~CD~C~~~fH~~Cl~PpL------------~--~~P---~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP--GDLVMCNQCEFCFHLDCHLPAL------------Q--DVP---GEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS--SCCEECTTSSCEECTTSSSTTC------------C--CCC---SSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC--CCEEECCCCCCceecccCCCCC------------C--CCc---CCCcCCccccCC
Confidence 3477899999976 4578899999999999987432 1 112 257888888753
No 68
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=74.80 E-value=4.6 Score=28.28 Aligned_cols=40 Identities=18% Similarity=0.570 Sum_probs=29.3
Q ss_pred cceecccccccccC----------CcceeEEeCCCCee-------eecccccCcccc
Q 040047 138 SSYVCDICHKQLDQ----------KCFWSYNCFACNFH-------AHVSCTRNRNNS 177 (240)
Q Consensus 138 ~~~~C~vC~~~~~~----------~~~~~Y~C~~C~~~-------lH~~C~~~~~~~ 177 (240)
..|.|+.|+..+.. +..+.|.|.+|+.+ .|..|+.....+
T Consensus 9 V~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~HtsCISEaeKY 65 (79)
T 1wjv_A 9 VFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHVKCISEGQKY 65 (79)
T ss_dssp CEEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCCCCCSCTTSS
T ss_pred eEEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEeeeCChhhee
Confidence 46899999986542 21468999999644 588999877764
No 69
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=74.42 E-value=1.8 Score=30.84 Aligned_cols=63 Identities=22% Similarity=0.492 Sum_probs=42.7
Q ss_pred CcccccccccCCCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP 88 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~ 88 (240)
..-.|.+|.-.-.+.-|.|..|+-.+|..|...+...+...- +-..+... ....|.|--|...
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a--~e~~l~A~---T~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSA--AEVTEMAH---TETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCC--CSCSCCCS---SSSSCCCTTTCCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHHH--HHHHHccC---CCCCccccccchh
Confidence 567899998766677899999999999999986654443321 22222222 2357888888653
No 70
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.24 E-value=1.2 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=25.7
Q ss_pred ccccccccCCCCc-eEeeCCCCCcchhhhccc
Q 040047 23 YSCSACELIISGS-AYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 23 ~~C~~C~~~~~g~-~Y~C~~C~f~lH~~Ca~~ 53 (240)
..|.+|..++... +|+|..|+.+++..|-.+
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f 47 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF 47 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH
Confidence 4699998887544 599999999999999764
No 71
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.59 E-value=3.2 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCccccccCCCC---CceeEEcCCCCcccccccccCC
Q 040047 78 GNFLCNACGEPG---SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~---~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
....|.+|+... .+....|..|+-.+|..|...|
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~ 41 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPH 41 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCc
Confidence 467899999863 3788999999999999998754
No 72
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.98 E-value=3.8 Score=26.89 Aligned_cols=35 Identities=34% Similarity=0.818 Sum_probs=29.4
Q ss_pred CCccccccCCCC--CceeEEcCCCCcccccccccCCc
Q 040047 78 GNFLCNACGEPG--SAFSFCCPLCDFDLHVQCAFLPE 112 (240)
Q Consensus 78 ~~~~Cd~C~~~~--~g~~Y~C~~C~f~lH~~Ca~lP~ 112 (240)
....|.+|++.. .++.-.|..|+--+|..|+.++.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~ 41 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP 41 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh
Confidence 467899999875 36788999999999999998763
No 73
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=69.75 E-value=2.6 Score=29.97 Aligned_cols=43 Identities=21% Similarity=0.520 Sum_probs=32.2
Q ss_pred CCCeeeeecCCCcccccccccCCCCceEeeCC--CCCcchhhhcccc
Q 040047 10 HNLRIYQVQHGNEYSCSACELIISGSAYGCWE--CKFFLHEQCGNAS 54 (240)
Q Consensus 10 H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~--C~f~lH~~Ca~~p 54 (240)
|.|-+.... -...|..|+....|.-..|.. |...+|-.||...
T Consensus 7 ~~~NIp~~R--~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 7 HHMNIPPAR--WKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp --CCCCCCC--CCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cccCCChHH--hcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 555555443 468899998876688899985 9999999999753
No 74
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.72 E-value=3.7 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=27.3
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|+.. +-...|..|+-.+|..|+..+.
T Consensus 7 ~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl 39 (66)
T 1xwh_A 7 NEDECAVCRDG-----GELICCDGCPRAFHLACLSPPL 39 (66)
T ss_dssp CCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCC
T ss_pred CCCCCccCCCC-----CCEEEcCCCChhhcccccCCCc
Confidence 56789999974 3478999999999999998544
No 75
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.65 E-value=1.6 Score=33.20 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=27.7
Q ss_pred CcccccccccCCC--CceEeeCCCCCcchhhhcccc
Q 040047 21 NEYSCSACELIIS--GSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 21 ~~~~C~~C~~~~~--g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
....|..|...++ ...++|..|+..++..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4568999988754 336999999999999998753
No 76
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.36 E-value=4.8 Score=28.76 Aligned_cols=34 Identities=26% Similarity=0.550 Sum_probs=27.7
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
.....|.+|++. +....|..|+-.+|..|...+.
T Consensus 23 ~n~~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL 56 (88)
T 1fp0_A 23 DSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPAL 56 (88)
T ss_dssp SSSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTC
T ss_pred CCCCcCcCcCCC-----CCEEECCCCCCceecccCCCCC
Confidence 466799999985 3478899999999999995543
No 77
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.32 E-value=4.6 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=29.5
Q ss_pred ceecccccccccCCcceeEEeC-CCCeeeecccccCcc
Q 040047 139 SYVCDICHKQLDQKCFWSYNCF-ACNFHAHVSCTRNRN 175 (240)
Q Consensus 139 ~~~C~vC~~~~~~~~~~~Y~C~-~C~~~lH~~C~~~~~ 175 (240)
.+.|.+|++..+.. +....|. .|+-=+|..|+....
T Consensus 3 ~~~C~iC~~p~~~~-~~mi~Cdd~C~~WfH~~CVglt~ 39 (105)
T 2xb1_A 3 VYPCGACRSEVNDD-QDAILCEASCQKWFHRECTGMTE 39 (105)
T ss_dssp CCBCTTTCSBCCTT-SCEEECTTTTCCEEEGGGTTCCH
T ss_pred cCCCCCCCCccCCC-CCEEEecCCcccccccccCCcCH
Confidence 47899999997554 5678898 998779999998775
No 78
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=66.85 E-value=4.2 Score=26.46 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|.+|++. +-.-.|..|+-.+|..|+..+..
T Consensus 4 ~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~ 37 (60)
T 2puy_A 4 HEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLK 37 (60)
T ss_dssp CCSSCTTTCCC-----SSCEECSSSSCEECGGGSSSCCS
T ss_pred CCCCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCcC
Confidence 45789999985 34778999999999999986543
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.84 E-value=2.9 Score=28.41 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCCccccccCCCCCc-eeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccccc
Q 040047 77 AGNFLCNACGEPGSA-FSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLD 150 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g-~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~ 150 (240)
.....|.+|++...+ ....|..|+-.+|..|+.++... .+ ...|.|..|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~-------------~~-------~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAP-------------PE-------EMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCC-------------CS-------SSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccC-------------CC-------CCCEEChhccCchh
Confidence 345789999987654 67889999999999999876331 00 14688998887653
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.35 E-value=2.6 Score=26.45 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=26.4
Q ss_pred ecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
.|.+|++..+ . ...-.|..|+-.+|..|+..+.
T Consensus 2 ~C~vC~~~~~-~-~~ll~Cd~C~~~~H~~Cl~p~l 34 (51)
T 1f62_A 2 RCKVCRKKGE-D-DKLILCDECNKAFHLFCLRPAL 34 (51)
T ss_dssp CCTTTCCSSC-C-SCCEECTTTCCEECHHHHCTTC
T ss_pred CCCCCCCCCC-C-CCEEECCCCChhhCcccCCCCc
Confidence 5899998754 2 4688999999999999997543
No 81
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.12 E-value=5.6 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=29.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|.+|++.-+........|..|+..+|..|...+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccc
Confidence 456899999864321146889999999999999876643
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.97 E-value=6.1 Score=25.29 Aligned_cols=33 Identities=21% Similarity=0.548 Sum_probs=27.4
Q ss_pred CCCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047 77 AGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.....|.+|++. +....|..|+-.+|..|...|
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~pp 39 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPP 39 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSC
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCC
Confidence 356789999975 567889999999999998754
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.52 E-value=3.1 Score=26.07 Aligned_cols=31 Identities=23% Similarity=0.566 Sum_probs=25.7
Q ss_pred cccccCCCC-CceeEEcCCCCcccccccccCC
Q 040047 81 LCNACGEPG-SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 81 ~Cd~C~~~~-~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.+|++.. .+....|..|+-.+|..|...|
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~ 33 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPA 33 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCC
Confidence 589999875 3678899999999999998643
No 84
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.74 E-value=5.1 Score=27.12 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=25.4
Q ss_pred ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.|.+|++..+ . +....|..|+-.+|..|+..+..
T Consensus 20 ~C~~C~~~~~-~-~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (70)
T 3asl_A 20 ACHLCGGRQD-P-DKQLMCDECDMAFHIYCLDPPLS 53 (70)
T ss_dssp SBTTTCCCSC-G-GGEEECTTTCCEEEGGGSSSCCS
T ss_pred CCcCCCCcCC-C-CCEEEcCCCCCceecccCCCCcC
Confidence 4557776533 2 56889999999999999986544
No 85
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.73 E-value=7.6 Score=27.98 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=27.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....| +|+...+. +....|..|+.-+|..|+..+.
T Consensus 27 d~vrC-iC~~~~~~--~~mi~Cd~C~~w~H~~C~~~~~ 61 (98)
T 2lv9_A 27 DVTRC-ICGFTHDD--GYMICCDKCSVWQHIDCMGIDR 61 (98)
T ss_dssp CBCCC-TTSCCSCS--SCEEEBTTTCBEEETTTTTCCT
T ss_pred CCEEe-ECCCccCC--CcEEEcCCCCCcCcCcCCCCCc
Confidence 34678 89887543 5688999999999999997654
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=64.67 E-value=2.6 Score=28.32 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=26.3
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|++. +-...|..|+-.+|..|...+.
T Consensus 11 ~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l 43 (66)
T 2lri_C 11 PGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAG 43 (66)
T ss_dssp TTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTT
T ss_pred CCCCcCCCCCC-----CeEEECCCCCCceecccCCCcc
Confidence 45679999864 3478899999999999986554
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=63.94 E-value=3.5 Score=29.31 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=50.2
Q ss_pred CccccccCCC-CCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccCCcceeE
Q 040047 79 NFLCNACGEP-GSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSY 157 (240)
Q Consensus 79 ~~~Cd~C~~~-~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y 157 (240)
...|++|.+. ...-...|..|+-.++..|....-.-....-.|.|....... ......|..-... ...|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~-----~~~~~~C~~H~~e-----~l~~ 72 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDS-----HIRGLMCLEHEDE-----KVNM 72 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSC-----CSSCCCCSSCSSS-----CCCE
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeecccccc-----CccCCcCcCcCCC-----cceE
Confidence 5689999965 345567899999999999986311000111124442111100 0123355554321 3578
Q ss_pred EeCCCCeeeeccccc
Q 040047 158 NCFACNFHAHVSCTR 172 (240)
Q Consensus 158 ~C~~C~~~lH~~C~~ 172 (240)
+|..|+.-++..|..
T Consensus 73 fC~~~~~~iC~~C~~ 87 (101)
T 2jun_A 73 YCVTDDQLICALCKL 87 (101)
T ss_dssp EETTTTEEECHHHHH
T ss_pred ECCCCCCccchhcCC
Confidence 999999999999975
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.72 E-value=5.7 Score=25.79 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=26.7
Q ss_pred CCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047 78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
....|.+|+.. |....|..|+-.+|..|...|
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~pp 35 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPP 35 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSC
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCC
Confidence 46789999975 567889999999999998754
No 89
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.52 E-value=5.4 Score=28.20 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=27.3
Q ss_pred CccccccCCCC---CceeEEcCCCCcccccccccCC
Q 040047 79 NFLCNACGEPG---SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 79 ~~~Cd~C~~~~---~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
...|.+|+... .+....|..|+..+|..|...|
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Pp 51 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQ 51 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCc
Confidence 56899999864 2678889999999999997654
No 90
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=63.41 E-value=3.4 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=29.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|+............|..|+..+|..|...+.
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~ 61 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY 61 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc
Confidence 56799999986421114788999999999999998764
No 91
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.53 E-value=7.7 Score=26.05 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=28.9
Q ss_pred CCCccccccCCCCC-ceeEEcCCCCcccccccccCCc
Q 040047 77 AGNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLPE 112 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~ 112 (240)
.....| .|++... ++...|..|+--.|..|+.++.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~ 52 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRK 52 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCc
Confidence 456788 9998765 4788999999999999998753
No 92
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.73 E-value=6.8 Score=27.06 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=26.3
Q ss_pred ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.|.+|++.-+ . +....|..|+-.+|..|+..+..
T Consensus 28 ~C~vC~~~~~-~-~~ll~CD~C~~~yH~~Cl~Ppl~ 61 (77)
T 2e6s_A 28 SCRVCGGKHE-P-NMQLLCDECNVAYHIYCLNPPLD 61 (77)
T ss_dssp SCSSSCCCCC-S-TTEEECSSSCCEEETTSSSSCCS
T ss_pred CCcCcCCcCC-C-CCEEEcCCCCccccccccCCCcc
Confidence 6778887543 2 46789999999999999986543
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=61.72 E-value=4.3 Score=27.13 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=29.7
Q ss_pred cceecccccccccCCcceeEEeC-CCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCF-ACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~-~C~~~lH~~C~~~~~~ 176 (240)
....|.+|+++.+.. ...-.|. .|+-=+|..|+.....
T Consensus 7 ~~~~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~Cvglt~~ 45 (65)
T 2vpb_A 7 PVYPCGICTNEVNDD-QDAILCEASCQKWFHRICTGMTET 45 (65)
T ss_dssp --CBCTTTCSBCCTT-SCEEEBTTTTCCEEEHHHHTCCHH
T ss_pred CcCcCccCCCccCCC-CCeEecccCccccCchhccCCCHH
Confidence 457899999997654 5677999 9987799999977653
No 94
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.15 E-value=9.3 Score=26.41 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=25.7
Q ss_pred ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.|.+|++..+. .....|..|+-.+|..|...+..
T Consensus 28 ~C~vC~~~~d~--~~ll~CD~C~~~yH~~Cl~PpL~ 61 (77)
T 3shb_A 28 ACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLS 61 (77)
T ss_dssp SBTTTCCCSCG--GGEEECTTTCCEEETTTSSSCCS
T ss_pred cCCccCCCCCC--cceeEeCCCCCccCcccCCCccc
Confidence 56667665432 46889999999999999986654
No 95
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=60.89 E-value=9.9 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=18.3
Q ss_pred cccCCCCC--ceeEEcCCCCcc----ccccccc
Q 040047 83 NACGEPGS--AFSFCCPLCDFD----LHVQCAF 109 (240)
Q Consensus 83 d~C~~~~~--g~~Y~C~~C~f~----lH~~Ca~ 109 (240)
.+|+.... ..+|+|.+|.+| |+..|..
T Consensus 9 ~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~ 41 (82)
T 3nis_A 9 RNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFN 41 (82)
T ss_dssp SCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCC
T ss_pred CCCCCcccCCCEEEEeeccCCCCCceEchhhCC
Confidence 35777663 688999999765 4444543
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=60.74 E-value=6.4 Score=26.13 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=36.3
Q ss_pred CCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccc
Q 040047 78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQ 148 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~ 148 (240)
....|.+|+.. +....|..|+-.+|..|...|.. ..+ .+.|.|..|...
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~-------------~~P-------~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPLR-------------EIP-------SGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCS-------------SCC-------SSCCCCHHHHHT
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCcC-------------cCC-------CCCeECccccCc
Confidence 46789999975 56788999999999999874421 111 256899999775
No 97
>1go9_A Corticotropin releasing hormone; synthetic analogues, solid phase synthesis, solutions structure; HET: DPN AIB; NMR {Synthetic} SCOP: j.16.1.1 PDB: 1goe_A* 2rme_A* 2rmd_A* 2rmi_A* 2jnd_B*
Probab=60.59 E-value=2.4 Score=25.89 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 040047 212 PVLEAQLELQRLQLEMQMAQELAKMMSSF 240 (240)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
-+++...||+|++.+.|.|..+-++|-.|
T Consensus 13 HlLR~mlemar~e~~~qqA~~NR~l~d~~ 41 (42)
T 1go9_A 13 HLAREVLEMARAEQLAQQAHSNRKLMEII 41 (42)
T ss_dssp HC-CCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 35666789999999999999988888654
No 98
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=60.28 E-value=4.1 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=27.3
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
.....|.+|+.. +-...|..|+-.+|..|+..+.
T Consensus 7 ~~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl 40 (61)
T 1mm2_A 7 HHMEFCRVCKDG-----GELLCCDTCPSSYHIHCLNPPL 40 (61)
T ss_dssp SSCSSCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCC
T ss_pred CCCCcCCCCCCC-----CCEEEcCCCCHHHcccccCCCc
Confidence 356789999874 3477899999999999998554
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=60.27 E-value=6.9 Score=28.20 Aligned_cols=32 Identities=25% Similarity=0.687 Sum_probs=26.5
Q ss_pred CccccccCCCC-CceeEEcCCCCcccccccccCC
Q 040047 79 NFLCNACGEPG-SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 79 ~~~Cd~C~~~~-~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
...| +|+... .+....|..|+..+|..|+.++
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~ 60 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGID 60 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCC
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCC
Confidence 3567 798876 4788999999999999998764
No 100
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.25 E-value=12 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=29.3
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....+| +|++.-+.+ ...-.|..|+.=+|..|+.....
T Consensus 14 ~~~~~C-~C~~~~~~g-~~mI~Cd~C~~W~H~~Cvg~~~~ 51 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDG-ERMLACDGCGVWHHTRCIGINNA 51 (72)
T ss_dssp SSEECC-TTCCCSCCS-SCEEECSSSCEEEETTTTTCCTT
T ss_pred CcceEe-eCCCccCCC-CcEEECCCCCCccCCeeeccCcc
Confidence 356789 799975433 46789999999999999987653
No 101
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=59.61 E-value=6.7 Score=26.70 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=28.4
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
...+| +|++.-+.. ...-.|..|+.=+|..|+.....
T Consensus 9 ~~~yC-iC~~~~~~~-~~MI~Cd~C~~WfH~~Cvg~~~~ 45 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVT-RFMIECDACKDWFHGSCVGVEEE 45 (75)
T ss_dssp CCEET-TTTEECCTT-SCEEECTTTCCEEEHHHHTCCTT
T ss_pred CeeEE-ECCCcCCCC-CCEEEcCCCCCCEeccccccccc
Confidence 45566 899875544 67889999999999999976543
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.49 E-value=6.1 Score=28.00 Aligned_cols=51 Identities=20% Similarity=0.586 Sum_probs=38.9
Q ss_pred CCccccccCCCC---CceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccccc
Q 040047 78 GNFLCNACGEPG---SAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLD 150 (240)
Q Consensus 78 ~~~~Cd~C~~~~---~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~ 150 (240)
....|.+|+... .+....|..|+..+|..|...|. ++ .+.|.|..|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-------------vP---------~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-------------IP---------EGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-------------CC---------SSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-------------cC---------CCceECccccCccc
Confidence 467999999864 25788999999999999988652 11 25689999987643
No 103
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.28 E-value=4.1 Score=29.27 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=26.9
Q ss_pred CCccccccCCCC----Cc-eeEEcCCCCcccccccccC
Q 040047 78 GNFLCNACGEPG----SA-FSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 78 ~~~~Cd~C~~~~----~g-~~Y~C~~C~f~lH~~Ca~l 110 (240)
+...|.+||..+ .| .+-.|.+|.|-|+..|...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY 52 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY 52 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH
Confidence 457999999986 34 6678999999999999753
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.84 E-value=7 Score=27.88 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=28.7
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|++..+ . ...-.|..|+-.+|..|+..+.
T Consensus 15 ~~~~C~vC~~~~~-~-~~ll~CD~C~~~~H~~Cl~Ppl 50 (92)
T 2e6r_A 15 DSYICQVCSRGDE-D-DKLLFCDGCDDNYHIFCLLPPL 50 (92)
T ss_dssp CCCCCSSSCCSGG-G-GGCEECTTTCCEECSSSSSSCC
T ss_pred CCCCCccCCCcCC-C-CCEEEcCCCCchhccccCCCCc
Confidence 3568999998754 2 4688999999999999997544
No 105
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=57.15 E-value=7.9 Score=26.13 Aligned_cols=31 Identities=29% Similarity=0.750 Sum_probs=23.9
Q ss_pred cccccCCCC-CceeEEcCCCCcccccccccCC
Q 040047 81 LCNACGEPG-SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 81 ~Cd~C~~~~-~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.+|++.. .+....|..|+-.+|..|...|
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Pp 51 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPP 51 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCC
Confidence 455677654 3678899999999999998744
No 106
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=56.36 E-value=5.3 Score=31.48 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=28.9
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
.....| +|++..+.. +..-.|..|.--+|..|+...
T Consensus 6 ~~~~~C-~C~~~~~~~-~~mi~Cd~C~~WfH~~Cv~~~ 41 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDES-KFYIGCDRCQNWYHGRCVGIL 41 (174)
T ss_dssp -CCEET-TTTEECCTT-SCEEECTTTCCEEEHHHHTCC
T ss_pred CCCcEe-eCCCCCCCC-CCEeECCCCCchhChhhcCCc
Confidence 356889 999986544 667899999999999999654
No 107
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=56.27 E-value=6.1 Score=25.85 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=37.5
Q ss_pred CCcccccccccCCCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC
Q 040047 20 GNEYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP 88 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~ 88 (240)
+....|..|+.. |..-.|..|+.-+|..|...|.. ..| .+.+.|..|...
T Consensus 9 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~--------------~~p---~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDME--------------KAP---EGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCC--------------SCC---CSSCCCTTGGGG
T ss_pred CCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCC--------------CCC---CCceECcccccc
Confidence 367889999874 56789999999999999986521 011 257899998754
No 108
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.34 E-value=4.7 Score=27.69 Aligned_cols=34 Identities=29% Similarity=0.754 Sum_probs=27.8
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
.....|.+|...+.. ..+|..|+..+|..|+..-
T Consensus 13 ~~i~~C~IC~~~i~~----g~~C~~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKY 46 (74)
T ss_dssp SSSCBCSSSCCBCSS----SEECSSSCCEECHHHHHHH
T ss_pred CCCCcCcchhhHccc----CCccCCCCchhhHHHHHHH
Confidence 456789999998752 5689999999999999643
No 109
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=55.03 E-value=7.2 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.537 Sum_probs=35.4
Q ss_pred CccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccc
Q 040047 79 NFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQL 149 (240)
Q Consensus 79 ~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~ 149 (240)
...|.+|+.. |....|..|+-..|..|...|.. ..+ .+.|.|..|...-
T Consensus 4 ~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l~-------------~~p-------~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTLT-------------NFP-------SGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECTTTSSSCCS-------------SCC-------SSCCCCTTTSCSS
T ss_pred CCccccCCCC--CeeeecCCCCcccCccccCCCCC-------------CCC-------CCCEECccccCcc
Confidence 4679999965 45788999999999999654311 111 2568999998754
No 110
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=53.79 E-value=7.2 Score=25.52 Aligned_cols=51 Identities=20% Similarity=0.507 Sum_probs=36.5
Q ss_pred CCCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccc
Q 040047 77 AGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQL 149 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~ 149 (240)
.....|.+|+.. +....|..|+-.+|..|...|.. ..+ .+.|.|..|....
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~-------------~~p-------~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLP-------------EIP-------NGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCS-------------SCC-------SSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcC-------------cCC-------CCccCChhhcCch
Confidence 346789999964 56778999999999999875421 111 2568899987653
No 111
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=53.77 E-value=5.3 Score=31.17 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=13.0
Q ss_pred ccccCCCCCceeEEcCCCCc
Q 040047 82 CNACGEPGSAFSFCCPLCDF 101 (240)
Q Consensus 82 Cd~C~~~~~g~~Y~C~~C~f 101 (240)
|.+|+......+|+|..|+.
T Consensus 104 CgiCR~G~~~~ffHC~~C~~ 123 (143)
T 2dkt_A 104 CGICRIGPKEDFFHCLKCNL 123 (143)
T ss_dssp TTEEEESCGGGEEEETTTTE
T ss_pred CCceeccCCcCcEECCcCCe
Confidence 44444443456899999885
No 112
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=53.47 E-value=2.7 Score=29.91 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=42.1
Q ss_pred CCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccc
Q 040047 78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQ 148 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~ 148 (240)
.+-.|.+|.....+..|.|..|.-..|..|..-+.....+. .+...+.-.+ ...|.|--|+..
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~-a~e~~l~A~T-------~~GWSC~~CenL 76 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDS-AAEVTEMAHT-------ETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCC-CCSCSCCCSS-------SSSCCCTTTCCC
T ss_pred CCcccCccccccccceeccccccccccHhhcccccccccHH-HHHHHHccCC-------CCCccccccchh
Confidence 46789999987778889999999999999987554433211 0222222222 367888888653
No 113
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.72 E-value=7.4 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIISGSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
+....|.+|...+. ....|..|+..||..|+..
T Consensus 13 ~~i~~C~IC~~~i~-~g~~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 13 DAVKICNICHSLLI-QGQSCETCGIRMHLPCVAK 45 (74)
T ss_dssp SSSCBCSSSCCBCS-SSEECSSSCCEECHHHHHH
T ss_pred CCCCcCcchhhHcc-cCCccCCCCchhhHHHHHH
Confidence 45688999998875 3579999999999999983
No 114
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.57 E-value=8.7 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.707 Sum_probs=27.9
Q ss_pred CCccccccCCCCC-ceeEEcCCCCcccccccccCC
Q 040047 78 GNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
....|.+|+.... +....|..|+-.+|..|...|
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Pp 49 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPP 49 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSC
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCC
Confidence 3568999998763 678899999999999998754
No 115
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.46 E-value=10 Score=26.05 Aligned_cols=35 Identities=29% Similarity=0.640 Sum_probs=29.4
Q ss_pred CCccccccCCC-CCceeEEcC--CCCcccccccccCCce
Q 040047 78 GNFLCNACGEP-GSAFSFCCP--LCDFDLHVQCAFLPEI 113 (240)
Q Consensus 78 ~~~~Cd~C~~~-~~g~~Y~C~--~C~f~lH~~Ca~lP~~ 113 (240)
....| +|+.. ..++.-.|. .|+.-.|..|+.++..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~ 52 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDK 52 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCT
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccc
Confidence 46788 79997 458889999 9999999999987643
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=51.22 E-value=15 Score=24.52 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=29.5
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....+| +|++.-+ + ...-.|..|+.=+|..|+.....
T Consensus 17 ~~~~~C-iC~~~~~-~-~~MIqCd~C~~WfH~~Cvgi~~~ 53 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-G-RPMIECNECHTWIHLSCAKIRKS 53 (68)
T ss_dssp TTCCCS-TTCCCCT-T-CCEEECTTTCCEEETTTTTCCTT
T ss_pred CCceEe-ECCCcCC-C-CCEEECCCCCccccccccCcCcc
Confidence 356788 9998754 3 56889999999999999987653
No 117
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.00 E-value=51 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
....|.+|+.. +-..-|..|+-.+|..|...+
T Consensus 3 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~ 34 (184)
T 3o36_A 3 NEDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPT 34 (184)
T ss_dssp SCSSCTTTCCC-----SSCEECSSSSCEECTTTSSSC
T ss_pred CCCccccCCCC-----CeeeecCCCCcccCccccCCC
Confidence 35679999965 337899999999999998543
No 118
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.99 E-value=10 Score=26.15 Aligned_cols=31 Identities=26% Similarity=0.741 Sum_probs=24.6
Q ss_pred cccccCCCC-CceeEEcCCCCcccccccccCC
Q 040047 81 LCNACGEPG-SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 81 ~Cd~C~~~~-~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.+|++.. .+....|..|+-.+|..|...|
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Pp 59 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPP 59 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCC
Confidence 677888754 3677889999999999998744
No 119
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.99 E-value=10 Score=25.70 Aligned_cols=35 Identities=29% Similarity=0.785 Sum_probs=28.6
Q ss_pred CCCccccccCCCCC-ceeEEcCCCCcccccccccCCc
Q 040047 77 AGNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLPE 112 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~ 112 (240)
.....| .|++... ++...|..|+--+|..|+.++.
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~ 49 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISE 49 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCH
T ss_pred CCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccch
Confidence 345778 8998765 5788999999999999998753
No 120
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=50.59 E-value=11 Score=30.44 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=27.8
Q ss_pred eecccccccccCCc--ceeEEeCCCCeeeecccccCcc
Q 040047 140 YVCDICHKQLDQKC--FWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 140 ~~C~vC~~~~~~~~--~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
..|.+|++.-+.+. ...-.|..|+.=+|..|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~ 40 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD 40 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCH
Confidence 46999999865431 2477999999999999996543
No 121
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=50.23 E-value=15 Score=23.05 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.8
Q ss_pred ecccccccccCCcceeEEeC-CCCeeeecccccCccc
Q 040047 141 VCDICHKQLDQKCFWSYNCF-ACNFHAHVSCTRNRNN 176 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~-~C~~~lH~~C~~~~~~ 176 (240)
.|.+|+++-+.+ ...-.|. .|.-=+|..|+.....
T Consensus 4 ~cc~C~~p~~~~-~~mI~Cd~~C~~WfH~~Cvgl~~~ 39 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDWVQCDGGCDEWFHQVCVGVSPE 39 (52)
T ss_dssp SCTTCCCCCCTT-CCEEECTTTTCCEEETTTTTCCHH
T ss_pred cCCCCcCccCCC-CcEEEeCCCCCccCcccccCCCcc
Confidence 477888886544 5567899 8988899999987543
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.43 E-value=11 Score=26.02 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=27.9
Q ss_pred CCcccccccccCCCC--ceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIISG--SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~ 53 (240)
++...|..|+....- ...+|..|+..++..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 356789999887642 3699999999999999875
No 123
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=49.37 E-value=12 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=28.6
Q ss_pred CccccccCCCC--CceeEEcC-CCCcccccccccCCc
Q 040047 79 NFLCNACGEPG--SAFSFCCP-LCDFDLHVQCAFLPE 112 (240)
Q Consensus 79 ~~~Cd~C~~~~--~g~~Y~C~-~C~f~lH~~Ca~lP~ 112 (240)
.+.|.+|++.. .+....|. .|+--+|..|..++.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~ 39 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTE 39 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCH
Confidence 57899999984 46778898 899999999998764
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.12 E-value=6.4 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.597 Sum_probs=25.7
Q ss_pred CccccccCCCCC-ceeEEcCCCCcccccccccC
Q 040047 79 NFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 79 ~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~l 110 (240)
...|-+|...+. ..+|+|..|..+++..|-..
T Consensus 15 ~~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f 47 (59)
T 1z60_A 15 ERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF 47 (59)
T ss_dssp CCEETTTTEECTTSEEECCTTTTCCBCHHHHHT
T ss_pred CCcccccCcccCCCccEECCccCcCcccchhHH
Confidence 356999998874 44699999999999998653
No 125
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=48.32 E-value=6.7 Score=28.15 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=28.9
Q ss_pred CcccccccccCC----CC-ceEeeCCCCCcchhhhcccccc
Q 040047 21 NEYSCSACELII----SG-SAYGCWECKFFLHEQCGNASRA 56 (240)
Q Consensus 21 ~~~~C~~C~~~~----~g-~~Y~C~~C~f~lH~~Ca~~p~~ 56 (240)
..-.|.+|+..+ .| .+-.|.+|+|-+++.|.+.-++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk 55 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR 55 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh
Confidence 457999998875 34 3678999999999999987543
No 126
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=47.94 E-value=5.8 Score=21.31 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhc
Q 040047 227 MQMAQELAKMMSS 239 (240)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (240)
.+|+-++|+||-+
T Consensus 2 eemawkiakmiv~ 14 (26)
T 2hwn_E 2 EELAWKIAKMIVS 14 (26)
T ss_pred chHHHHHHHHHHH
Confidence 4678888888754
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.53 E-value=11 Score=26.55 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=27.7
Q ss_pred CcccccccccCCCC--ceEeeCCCCCcchhhhcccc
Q 040047 21 NEYSCSACELIISG--SAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 21 ~~~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~p 54 (240)
....|..|...+.- ..++|..|+..++..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 55789999887532 36999999999999998853
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=47.42 E-value=13 Score=25.66 Aligned_cols=31 Identities=29% Similarity=0.751 Sum_probs=23.6
Q ss_pred cccccCCCCC-ceeEEcCCCCcccccccccCC
Q 040047 81 LCNACGEPGS-AFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 81 ~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.+|++... +....|..|+-.+|..|...|
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~Pp 59 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPP 59 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSC
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCc
Confidence 5666666543 667889999999999997754
No 129
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=46.38 E-value=12 Score=30.38 Aligned_cols=60 Identities=20% Similarity=0.500 Sum_probs=39.8
Q ss_pred CCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccccccCCcceeE
Q 040047 78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSY 157 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y 157 (240)
....|.+|+.. |....|..|+-..|..|...|.. ..+ .+.|.|..|...... ...|
T Consensus 6 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l~-------------~~p-------~~~W~C~~C~~~~~~--~~~~ 61 (207)
T 3u5n_A 6 NEDWCAVCQNG--GDLLCCEKCPKVFHLTCHVPTLL-------------SFP-------SGDWICTFCRDIGKP--EVEY 61 (207)
T ss_dssp SCSSBTTTCCC--EEEEECSSSSCEECTTTSSSCCS-------------SCC-------SSCCCCTTTSCSSSC--SSCC
T ss_pred CCCCCCCCCCC--CceEEcCCCCCccCCccCCCCCC-------------CCC-------CCCEEeCceeCcccc--cccc
Confidence 45679999965 56788999999999999754311 111 256899999876431 2345
Q ss_pred EeCC
Q 040047 158 NCFA 161 (240)
Q Consensus 158 ~C~~ 161 (240)
.|..
T Consensus 62 ~c~~ 65 (207)
T 3u5n_A 62 DCDN 65 (207)
T ss_dssp SCC-
T ss_pred cccc
Confidence 5543
No 130
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.98 E-value=10 Score=31.82 Aligned_cols=31 Identities=29% Similarity=0.751 Sum_probs=22.9
Q ss_pred cccccCCCCC-ceeEEcCCCCcccccccccCC
Q 040047 81 LCNACGEPGS-AFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 81 ~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.|.+|+.... +....|..|+-..|..|...|
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PP 207 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPP 207 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CC
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCC
Confidence 5888887543 677899999999999998644
No 131
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.94 E-value=13 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=28.3
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....| +|++.-+.. ...-.|..|..=+|..|+....
T Consensus 11 ~~~~C-~C~~~~d~~-~~MIqCd~C~~WfH~~Cvgl~~ 46 (79)
T 1wep_A 11 VPVYC-LCRQPYNVN-HFMIECGLCQDWFHGSCVGIEE 46 (79)
T ss_dssp CCCCS-TTSCSCCSS-SCEEEBTTTCCEEEHHHHTCCH
T ss_pred CccEE-EcCCccCCC-CceEEcCCCCCcEEeeecCccc
Confidence 45677 999986544 6678999998889999997654
No 132
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=45.05 E-value=9.2 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040047 211 DPVLEAQLELQRLQLEMQMAQELAKMMS 238 (240)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
--+++...||+|.+.++|.|..+-++|-
T Consensus 9 FhlLR~m~emar~e~~~qqA~~NR~lld 36 (38)
T 2l27_B 9 FNLLREVLEIAKAEQEAEEAAKNRLLLE 36 (38)
T ss_dssp HHHHHHHHHHHHHGGGTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 3578888999999999888888877774
No 133
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.72 E-value=14 Score=25.28 Aligned_cols=34 Identities=29% Similarity=0.584 Sum_probs=28.0
Q ss_pred CCccccccCCCC--CceeEEcCCCCcccccccccCCc
Q 040047 78 GNFLCNACGEPG--SAFSFCCPLCDFDLHVQCAFLPE 112 (240)
Q Consensus 78 ~~~~Cd~C~~~~--~g~~Y~C~~C~f~lH~~Ca~lP~ 112 (240)
....| .|+... .++...|..|+--+|..|+.++.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~ 46 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEE 46 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCH
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccc
Confidence 45677 899875 47888999999999999998753
No 134
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=43.69 E-value=8.5 Score=32.31 Aligned_cols=33 Identities=27% Similarity=0.765 Sum_probs=27.9
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
.-..|.+|...+ .+..+|..|+..+|..|+..-
T Consensus 179 ~i~~C~iC~~iv----~~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLL----IQGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBC----SSCEECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHH----hCCcccCccChHHHHHHHHHH
Confidence 467899999987 357999999999999998553
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.35 E-value=13 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=20.0
Q ss_pred CcccccccccCCCCceEeeCCCCCcch
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLH 47 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH 47 (240)
.+..|..|++.+.-..|.| .|+..++
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC 39 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFC 39 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEEC
T ss_pred cCCcChhhCCcccccCeEe-ecCCEec
Confidence 4678999999864447999 7987664
No 136
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.33 E-value=15 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=27.3
Q ss_pred CcccccccccCCC--CceEeeCCCCCcchhhhccc
Q 040047 21 NEYSCSACELIIS--GSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 21 ~~~~C~~C~~~~~--g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
....|..|..+.. ..+.+|..|+..++..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 5678999988753 33699999999999999874
No 137
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.04 E-value=17 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCccccccCCCCCceeEEcCC--CCc-ccccccccCCc
Q 040047 78 GNFLCNACGEPGSAFSFCCPL--CDF-DLHVQCAFLPE 112 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~--C~f-~lH~~Ca~lP~ 112 (240)
....| .|++...|..-.|.. |.. -+|..|..++.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~ 44 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTT 44 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCccc
Confidence 46778 899876688889999 664 89999998653
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.93 E-value=17 Score=23.85 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.7
Q ss_pred CCccccccCCCCCceeEEcCCCC---cccccccccCC
Q 040047 78 GNFLCNACGEPGSAFSFCCPLCD---FDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~C~---f~lH~~Ca~lP 111 (240)
....| .|++...|..-.|..|+ --+|..|+.++
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~ 45 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLT 45 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcC
Confidence 46788 89987668888999955 67999999875
No 139
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.86 E-value=17 Score=23.58 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=26.2
Q ss_pred CCccccccCCCCCceeEEcCC--CC-cccccccccCC
Q 040047 78 GNFLCNACGEPGSAFSFCCPL--CD-FDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~--C~-f~lH~~Ca~lP 111 (240)
....| .|++...|....|.. |. -.+|..|+.++
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~ 44 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT 44 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCC
Confidence 46778 899876688889999 55 46999999865
No 140
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.81 E-value=13 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.485 Sum_probs=20.5
Q ss_pred CcccccccccCCCCceEeeCCCCCcchh
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLHE 48 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~ 48 (240)
.+..|+.|++.+.-..|.| .|+..++.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~ 40 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCG 40 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEecc
Confidence 5688999999864447999 59876653
No 141
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.36 E-value=15 Score=24.71 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=25.6
Q ss_pred ccccccccCCC--CceEeeCCCCCcchhhhccc
Q 040047 23 YSCSACELIIS--GSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 23 ~~C~~C~~~~~--g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
..|..|+.+.. ...++|..|+..++..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999988753 23699999999999999874
No 142
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=41.99 E-value=17 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCccccccCCCCCceeEEcCCCC---cccccccccCC
Q 040047 77 AGNFLCNACGEPGSAFSFCCPLCD---FDLHVQCAFLP 111 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~C~---f~lH~~Ca~lP 111 (240)
.....| +|+....|..-.|..|+ -.+|..|+.++
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~ 60 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK 60 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC
Confidence 346788 89986667778899976 67999999865
No 143
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=41.77 E-value=18 Score=29.32 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.1
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
....|.+|+.. +-..-|..|+-.+|..|...+
T Consensus 6 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~ 37 (207)
T 3u5n_A 6 NEDWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPT 37 (207)
T ss_dssp SCSSBTTTCCC-----EEEEECSSSSCEECTTTSSSC
T ss_pred CCCCCCCCCCC-----CceEEcCCCCCccCCccCCCC
Confidence 45679999865 447899999999999998544
No 144
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.46 E-value=10 Score=29.84 Aligned_cols=34 Identities=26% Similarity=0.578 Sum_probs=27.9
Q ss_pred CCCccccccCCCC--CceeEEcCCCCcccccccccCC
Q 040047 77 AGNFLCNACGEPG--SAFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 77 ~~~~~Cd~C~~~~--~g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
.....| .|+... .+....|..|+-..|..|..++
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~ 41 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGIL 41 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCC
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCc
Confidence 457889 999875 4778999999999999999764
No 145
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=40.97 E-value=24 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=26.6
Q ss_pred CCccccccCCCCCceeEEcCC--CCc-ccccccccCC
Q 040047 78 GNFLCNACGEPGSAFSFCCPL--CDF-DLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~~g~~Y~C~~--C~f-~lH~~Ca~lP 111 (240)
....| .|++...|....|.. |.+ .+|..|+.++
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~ 50 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT 50 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcC
Confidence 46788 799876688888999 764 7999999865
No 146
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=40.63 E-value=10 Score=30.54 Aligned_cols=29 Identities=28% Similarity=0.839 Sum_probs=23.5
Q ss_pred ccccccCCCCCceeEEcCCCCcccccccccC
Q 040047 80 FLCNACGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 80 ~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
-.|.+|+.. |....|..|+-..|..|...
T Consensus 3 ~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP--GDLVMCNQCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC--SSCCCCTTTCCBCCSTTSTT
T ss_pred CcCccCCCC--CceeECCCCCchhccccCCC
Confidence 479999975 34677999999999999754
No 147
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.54 E-value=15 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=20.9
Q ss_pred CcccccccccCCCCceEeeCCCCCcchh
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLHE 48 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~ 48 (240)
....|..|++.+.-..|.| .|+..++.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs 50 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCG 50 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECT
T ss_pred cCccchhhcCcccccceEe-ccCCEecc
Confidence 5688999998865457999 69876653
No 148
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.31 E-value=22 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=30.6
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|++..+.. .....|..||-.++..|.....
T Consensus 18 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 18 EATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCEEE
T ss_pred cCCcccCcCCcccCc-cccccCCCCCCEEChHHhCCee
Confidence 456899999987644 5789999999999999987654
No 149
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.13 E-value=23 Score=24.50 Aligned_cols=38 Identities=18% Similarity=0.472 Sum_probs=31.2
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|..|++..+.- .....|..||-.++..|......
T Consensus 20 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~ 57 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHRAA 57 (84)
T ss_dssp TCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCEEE
T ss_pred CCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCeEe
Confidence 456899999987644 56899999999999999876544
No 150
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.30 E-value=27 Score=24.18 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=28.3
Q ss_pred CCCccccccCCCCC--ceeEEcCCCCcccccccccC
Q 040047 77 AGNFLCNACGEPGS--AFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~l 110 (240)
.....|..|+..+. .-..+|..|+-.++..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34678999999874 45699999999999999864
No 151
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=39.07 E-value=19 Score=21.85 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=27.0
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccC
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN 173 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~ 173 (240)
....|.+|......+ .....-..|+-.+|..|+..
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~ 38 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEE 38 (55)
T ss_dssp CCCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHH
T ss_pred CCCcCcccChhhcCC-CcCeEecCCCCcccHHHHHH
Confidence 467899999887543 34567788999999999854
No 152
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=38.75 E-value=18 Score=24.05 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCccccccCCCCC--ceeEEcC-CCCcccccccccCCc
Q 040047 78 GNFLCNACGEPGS--AFSFCCP-LCDFDLHVQCAFLPE 112 (240)
Q Consensus 78 ~~~~Cd~C~~~~~--g~~Y~C~-~C~f~lH~~Ca~lP~ 112 (240)
....|..|++... .+.-.|. .|+--+|..|+.+..
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~ 44 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTE 44 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCH
Confidence 3678999999763 5667899 999999999998764
No 153
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=38.16 E-value=11 Score=27.37 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=23.1
Q ss_pred cceecccccccccCCcceeEEeCCCC--ee---eecccccC
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACN--FH---AHVSCTRN 173 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~--~~---lH~~C~~~ 173 (240)
....|-.|...+... +..|.|..|+ |. +++.|-..
T Consensus 31 M~~~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-NGHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CCCBCSSSCSBEEEE-TTEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccccCccCCCcceec-CCEEECccccchhhccccCcchhhH
Confidence 457899999887544 4567799984 33 45555443
No 154
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=37.67 E-value=12 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.543 Sum_probs=19.4
Q ss_pred CcccccccccCCCCceEeeCCCCCcch
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLH 47 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH 47 (240)
....|..|++.+.-..|.|. |+..++
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FC 49 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFC 49 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEEC
T ss_pred cCCcChhhCCcccccCeecC-CCCEec
Confidence 45689999988644579999 985553
No 155
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.14 E-value=23 Score=24.87 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.9
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|.+|++..... ...+.|..||..++..|......
T Consensus 19 ~~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp GCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEE
T ss_pred cCCcCcCCCCcccch-hhCccccCCCCEECCcccCCeee
Confidence 346799999987643 56899999999999999877654
No 156
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.08 E-value=32 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=27.5
Q ss_pred CCccccccCCCCC--ceeEEcCCCCcccccccccC
Q 040047 78 GNFLCNACGEPGS--AFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 78 ~~~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~l 110 (240)
....|..|+..+. .-..+|..|+-.++..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4568999999874 45699999999999999763
No 157
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=35.78 E-value=16 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIISGSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
|.-..|..|...+. .+.+|..|+..+|..|+..
T Consensus 178 ~~i~~C~iC~~iv~-~g~~C~~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 178 DAVKICNICHSLLI-QGQSCETCGIRMHLPCVAK 210 (238)
T ss_dssp TTCCBCTTTCSBCS-SCEECSSSCCEECHHHHHH
T ss_pred CCCCcCcchhhHHh-CCcccCccChHHHHHHHHH
Confidence 35788999999875 4699999999999999974
No 158
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=35.58 E-value=18 Score=25.41 Aligned_cols=32 Identities=31% Similarity=0.642 Sum_probs=27.3
Q ss_pred CccccccCCCCCceeEEcCC--CCcccccccccC
Q 040047 79 NFLCNACGEPGSAFSFCCPL--CDFDLHVQCAFL 110 (240)
Q Consensus 79 ~~~Cd~C~~~~~g~~Y~C~~--C~f~lH~~Ca~l 110 (240)
..+|.+|++...|-.-.|.. |.-.+|+.||..
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 56899999776688889986 999999999964
No 159
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=35.42 E-value=18 Score=25.36 Aligned_cols=31 Identities=16% Similarity=0.459 Sum_probs=22.9
Q ss_pred cccccccCCcceeEEeCCCCe----eeecccccCcc
Q 040047 144 ICHKQLDQKCFWSYNCFACNF----HAHVSCTRNRN 175 (240)
Q Consensus 144 vC~~~~~~~~~~~Y~C~~C~~----~lH~~C~~~~~ 175 (240)
+|++....+ .+.|+|..|.+ .|+..|.....
T Consensus 10 ~Cg~vf~~g-e~~Y~C~~C~~d~tcvlC~~CF~~s~ 44 (82)
T 3nis_A 10 NCGRKFKIG-EPLYRCHECGCDDTCVLCIHCFNPKD 44 (82)
T ss_dssp CCCCBCCTT-CEEEEETTTBSSTTCCBCTTTCCGGG
T ss_pred CCCCcccCC-CEEEEeeccCCCCCceEchhhCCCCC
Confidence 577777666 89999999954 37778876544
No 160
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=35.32 E-value=17 Score=26.55 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=44.1
Q ss_pred ccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceecccccc---cccCCccee
Q 040047 80 FLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHK---QLDQKCFWS 156 (240)
Q Consensus 80 ~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~---~~~~~~~~~ 156 (240)
..|.+|++. .|..|++-+|..|...|......... .+-.....+ .-.....|..|.. .-+.. ...
T Consensus 8 ~~C~~C~~~------~C~~C~~c~~~~~~~~~~~~~~~c~~--~~~~~~~~~---~~~~c~~c~~c~~c~~~~~~~-~~m 75 (117)
T 4bbq_A 8 RKCKACVQG------ECGVCHYCRDMKKFGGPGRMKQSCVL--RQCLAPRLP---HSVTCSLCGEVDQNEETQDFE-KKL 75 (117)
T ss_dssp SCSHHHHSC------CCSCSHHHHHSGGGTSCCCSCCCCGG--GCCSSCBCC---TTCBCTTTCCBCCHHHHCCGG-GSC
T ss_pred CcCcCcCCc------CCCCCCCCcCCcccCCCCccccchhh--eeecccccc---ccccccccCcccccccccccC-cce
Confidence 467777764 29999999999987655332111100 000000000 0001122333322 22212 346
Q ss_pred EEeCCCCeeeecccccCcc
Q 040047 157 YNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 157 Y~C~~C~~~lH~~C~~~~~ 175 (240)
..|..|+-.+|..|.....
T Consensus 76 ~~C~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 76 MECCICNEIVHPGCLQMDG 94 (117)
T ss_dssp EEETTTCCEECGGGCCSCC
T ss_pred EEeeecCCeEECCCCCCCc
Confidence 7899999999999987654
No 161
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=35.26 E-value=18 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=22.2
Q ss_pred cccccccCCcceeEEeCCCCe----eeecccccCcc
Q 040047 144 ICHKQLDQKCFWSYNCFACNF----HAHVSCTRNRN 175 (240)
Q Consensus 144 vC~~~~~~~~~~~Y~C~~C~~----~lH~~C~~~~~ 175 (240)
+|++....+ .+.|+|..|.+ .++..|.....
T Consensus 6 ~Cg~vf~~g-e~~Y~C~~C~~d~tc~lC~~CF~~~~ 40 (75)
T 3ny3_A 6 LCGRVFKVG-EPTYSCRDCAVDPTCVLCMECFLGSI 40 (75)
T ss_dssp CCCCBCCTT-CEEEEETTTBSSTTCCBCHHHHHTSG
T ss_pred ccCCcccCC-CEEEECccCCCCCCeeEChHHCCCCC
Confidence 577777666 79999999953 46777765543
No 162
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.23 E-value=21 Score=26.80 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=26.2
Q ss_pred CCcccccccccCCCC--ceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIISG--SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~ 53 (240)
.....|.+|+.+.+- ...+|..|+..++..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 356789999887643 3699999999999999874
No 163
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.09 E-value=22 Score=22.98 Aligned_cols=34 Identities=24% Similarity=0.650 Sum_probs=26.7
Q ss_pred CCcccccccccCCCCceEeeCC--CCC-cchhhhcccc
Q 040047 20 GNEYSCSACELIISGSAYGCWE--CKF-FLHEQCGNAS 54 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~--C~f-~lH~~Ca~~p 54 (240)
++...| .|+.+-.|.--.|.. |.. -+|..|+.+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~ 43 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLT 43 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCS
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcc
Confidence 467888 898876677789998 664 8999999854
No 164
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=34.88 E-value=16 Score=20.94 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=18.4
Q ss_pred CCCccccccCCCCCceeEEcCCCC
Q 040047 77 AGNFLCNACGEPGSAFSFCCPLCD 100 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~C~ 100 (240)
.+++.|..|+......+-.|..|+
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~ 27 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCN 27 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSC
T ss_pred CCCcccCCCCCccccccccccccC
Confidence 468999999987666667777775
No 165
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=34.81 E-value=14 Score=24.65 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=19.7
Q ss_pred CCccccccCCCCC---ceeEEcCCCCccc
Q 040047 78 GNFLCNACGEPGS---AFSFCCPLCDFDL 103 (240)
Q Consensus 78 ~~~~Cd~C~~~~~---g~~Y~C~~C~f~l 103 (240)
-.+.|..||..+. +...+|..|++.+
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 4689999998763 4568898888764
No 166
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.56 E-value=26 Score=26.24 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=30.4
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|.+|++..+.. ...+.|..||-.++..|.....
T Consensus 68 ~~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccc-cccccCCCCCeEEChHHhCCcc
Confidence 456899999987643 5689999999999999987654
No 167
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.49 E-value=25 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=29.2
Q ss_pred eecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
..|.+|++..+.- ...+.|..||-.++..|......
T Consensus 12 ~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~~~~ 47 (73)
T 1vfy_A 12 DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNSIP 47 (73)
T ss_dssp SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEEEE
T ss_pred CcccCCCCccCCc-cccccCCCCCEEEcccccCCeEE
Confidence 4799999987543 56899999999999999865543
No 168
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.97 E-value=22 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=18.8
Q ss_pred CccccccCCCCCceeEEcCCCCccccc
Q 040047 79 NFLCNACGEPGSAFSFCCPLCDFDLHV 105 (240)
Q Consensus 79 ~~~Cd~C~~~~~g~~Y~C~~C~f~lH~ 105 (240)
...|.+|+. ...|.|..|+...+.
T Consensus 12 ~~~C~vC~~---~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 12 TVVCVICLE---KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCTTTCS---CCSEECTTTCCEESS
T ss_pred CCccCcCcC---CCeeeCCCCCCCeeC
Confidence 457999997 456999999877654
No 169
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.26 E-value=27 Score=22.47 Aligned_cols=44 Identities=18% Similarity=0.573 Sum_probs=26.7
Q ss_pred eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
.|.|..|+|.+...=.+....|. |.-+|.-+ | ..+.|-.||..-
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~----pGt~fe~l--P----~dw~CP~Cg~~K 46 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVN----PGTDFKDI--P----DDWVCPLCGVGK 46 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBC----TTCCGGGS--C----TTCBCTTTCCBG
T ss_pred ceECCCCCeEECCCcCCcccCcC----CCCChhHC--C----CCCcCcCCCCcH
Confidence 59999999887765444333332 23233211 2 378999999753
No 170
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.07 E-value=22 Score=29.74 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=24.1
Q ss_pred ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
.|.+|++..+. +..-.|..|+-.+|..|...+..
T Consensus 176 ~C~vC~~~~~~--~~lL~CD~C~~~yH~~CL~PPL~ 209 (226)
T 3ask_A 176 ACHLCGGRQDP--DKQLMCDECDMAFHIYCLDPPLS 209 (226)
T ss_dssp SCSSSCCCCC----CCEECSSSCCEECSCC--CCCC
T ss_pred CCcCCCCCCCC--CCeEEcCCCCcceeCccCCCCcc
Confidence 58888875432 46789999999999999986654
No 171
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.95 E-value=28 Score=24.70 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=27.3
Q ss_pred CCcccccccccCCCCceEeeCCCC---Ccchhhhcccc
Q 040047 20 GNEYSCSACELIISGSAYGCWECK---FFLHEQCGNAS 54 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~C~---f~lH~~Ca~~p 54 (240)
++...| .|..+-.|.--.|..|+ --+|..|+.+.
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~ 60 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLK 60 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCS
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCC
Confidence 477889 89987677778899866 67999999864
No 172
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=32.91 E-value=24 Score=25.27 Aligned_cols=40 Identities=28% Similarity=0.537 Sum_probs=29.1
Q ss_pred eEeeCCCC---CcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 36 AYGCWECK---FFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 36 ~Y~C~~C~---f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
+|.|.+|+ |...+.|.+. +|+|+.+... ...|.|. |+...
T Consensus 15 av~C~~C~yt~~~~~~~C~~~----------~H~l~~~~a~---KRFFkC~-C~~Rt 57 (92)
T 2kwq_A 15 VVTCKTCKYTHFKPKETCVSE----------NHDFHWHNGV---KRFFKCP-CGNRT 57 (92)
T ss_dssp EEEETTTCCEESSCCHHHHHT----------TCCEEEEEEE---CEEEECT-TSCEE
T ss_pred EEEccCCcceecCcchhHHhc----------CCceEEEeee---EEEEECC-CCCce
Confidence 69999997 5777788772 5888877543 3468886 88754
No 173
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=32.34 E-value=30 Score=21.24 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhh
Q 040047 227 MQMAQELAKMMS 238 (240)
Q Consensus 227 ~~~~~~~~~~~~ 238 (240)
.+||-++|+||-
T Consensus 15 EEMAWqIA~MIV 26 (45)
T 3im4_C 15 EELAWKIAKMIV 26 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666663
No 174
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.28 E-value=32 Score=23.35 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCcccccccccCC-CCceEeeC--CCCCcchhhhcccccc
Q 040047 20 GNEYSCSACELII-SGSAYGCW--ECKFFLHEQCGNASRA 56 (240)
Q Consensus 20 ~~~~~C~~C~~~~-~g~~Y~C~--~C~f~lH~~Ca~~p~~ 56 (240)
+....| .|+... .|..-.|. .|+.=+|..|+.++..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~ 52 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDK 52 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCT
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccc
Confidence 367889 798873 56678999 9999999999997654
No 175
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=32.27 E-value=48 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=30.0
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
....|..|++....- .....|..||-.++..|.....
T Consensus 8 ~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEE
T ss_pred cCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCCce
Confidence 456899999987643 5689999999999999986644
No 176
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=32.22 E-value=45 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040047 212 PVLEAQLELQRLQLEMQMAQELAKMMS 238 (240)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
..|+.-.||+|-+.+.+-|-.+|+.|.
T Consensus 10 ~LL~~lle~Ar~~~~r~qAa~Na~lla 36 (38)
T 2rmg_A 10 GLLQILLEQARARAAREQATTNARILA 36 (38)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 467778899999999888888888875
No 177
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.87 E-value=34 Score=21.28 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=23.8
Q ss_pred ccCCCCC-ceeEEcCCCCcccccccccCCc
Q 040047 84 ACGEPGS-AFSFCCPLCDFDLHVQCAFLPE 112 (240)
Q Consensus 84 ~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~ 112 (240)
.|++... ++.-.|..|+.-.|..|+.++.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~ 37 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRK 37 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCG
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCc
Confidence 5777654 4888999999999999998764
No 178
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=31.58 E-value=15 Score=29.47 Aligned_cols=30 Identities=27% Similarity=0.623 Sum_probs=24.0
Q ss_pred eecccccccccCCcceeEEeCCCCeeeecccccCc
Q 040047 140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNR 174 (240)
Q Consensus 140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~ 174 (240)
..|.+|++.. -...|..|+-.+|..|...+
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~Cl~p~ 32 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLDCHLPA 32 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCSTTSTTC
T ss_pred CcCccCCCCC-----ceeECCCCCchhccccCCCC
Confidence 4799999753 36679999999999999543
No 179
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=30.54 E-value=12 Score=27.51 Aligned_cols=59 Identities=24% Similarity=0.446 Sum_probs=35.3
Q ss_pred CcccccccccCCCCceEeeCCCCCcchhhhccccc--cccCCCCCCcceEEeeccCCCCCCccccccCCC
Q 040047 21 NEYSCSACELIISGSAYGCWECKFFLHEQCGNASR--AMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP 88 (240)
Q Consensus 21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~--~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~ 88 (240)
....|..|+... ..|-|..|++.. |...+. ...|..-.+|++.+.-.+ +...|-.|+..
T Consensus 23 ~~~~C~~C~~~~--~~W~CL~CG~vg---Cgr~~~~HA~~H~~~t~H~~~~~l~~----~~vwCy~cd~~ 83 (109)
T 3c5k_A 23 VTQPCGDCGTIQ--ENWVCLSCYQVY---CGRYINGHMLQHHGNSGHPLVLSYID----LSAWCYYCQAY 83 (109)
T ss_dssp TTCCCTTTCCCS--SEEEETTTCCEE---ECTTTTCHHHHHHHHHCCCEEEETTT----CCEEETTTTEE
T ss_pred cCCcCccccCCC--CeeeeeecCccc---cCCCcChHHHHHhcccCCCEEEECCC----CCEEECCCCCE
Confidence 356799998763 468899999988 554432 123333235788775332 24455555443
No 180
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.88 E-value=25 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.484 Sum_probs=26.3
Q ss_pred cccccccccCCCC--ceEeeCCCCCcchhhhccc
Q 040047 22 EYSCSACELIISG--SAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 22 ~~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~ 53 (240)
...|..|..+.+- ..++|..|+..++..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3589999887643 3699999999999999884
No 181
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.07 E-value=27 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.2
Q ss_pred CcccccccccCCCC-ceEeeCCCCCcchh
Q 040047 21 NEYSCSACELIISG-SAYGCWECKFFLHE 48 (240)
Q Consensus 21 ~~~~C~~C~~~~~g-~~Y~C~~C~f~lH~ 48 (240)
..-.|..|++.+.- ..|.|. |+..++.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECT
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecc
Confidence 56799999988543 279996 9876653
No 182
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.04 E-value=45 Score=22.92 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=30.4
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
....|..|++....- .....|..||-.++..|......
T Consensus 13 ~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 13 NFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFKVP 50 (84)
T ss_dssp CCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEEEC
T ss_pred CCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCcee
Confidence 456899999987543 56899999999999999866543
No 183
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.78 E-value=30 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=26.4
Q ss_pred CCccccccCCCCC--ceeEEcCCCCcccccccccC
Q 040047 78 GNFLCNACGEPGS--AFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 78 ~~~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~l 110 (240)
....|..|+..+. ....+|..|+..++..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCC
Confidence 3568999999874 45699999999999999764
No 184
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.44 E-value=40 Score=27.02 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.1
Q ss_pred ccccccCCCCC-----ceeEEcCCCCcccccccccCC
Q 040047 80 FLCNACGEPGS-----AFSFCCPLCDFDLHVQCAFLP 111 (240)
Q Consensus 80 ~~Cd~C~~~~~-----g~~Y~C~~C~f~lH~~Ca~lP 111 (240)
..|.+|++... +..-.|..|+.-+|..|..+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~ 39 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLS 39 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccC
Confidence 46999998653 237799999999999999765
No 185
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=28.06 E-value=50 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=26.5
Q ss_pred CCccccccCCCC-CceeEEcC--CCCcccccccccCC
Q 040047 78 GNFLCNACGEPG-SAFSFCCP--LCDFDLHVQCAFLP 111 (240)
Q Consensus 78 ~~~~Cd~C~~~~-~g~~Y~C~--~C~f~lH~~Ca~lP 111 (240)
....| .||... .|+.-.|. .|+.-.|..|..++
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~ 44 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIP 44 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCC
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCC
Confidence 34667 798875 48889998 59999999999765
No 186
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.06 E-value=27 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=26.8
Q ss_pred cccccccccCCC--CceEeeCCCCCcchhhhcccc
Q 040047 22 EYSCSACELIIS--GSAYGCWECKFFLHEQCGNAS 54 (240)
Q Consensus 22 ~~~C~~C~~~~~--g~~Y~C~~C~f~lH~~Ca~~p 54 (240)
...|..|..... ..+.+|..|+..++..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 368999988753 336999999999999998853
No 187
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.01 E-value=30 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=21.9
Q ss_pred ceecccccccccCCcceeEEeCCCCeeeec-cccc
Q 040047 139 SYVCDICHKQLDQKCFWSYNCFACNFHAHV-SCTR 172 (240)
Q Consensus 139 ~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~-~C~~ 172 (240)
...|.||..... . ...|+|..|++-++. .|.+
T Consensus 11 ~~~C~vC~~~~~-~-~akY~CPrC~~rYCSl~C~k 43 (59)
T 1x4s_A 11 AGPCGFCPAGEV-Q-PARYTCPRCNAPYCSLRCYR 43 (59)
T ss_dssp CEEECSSCTTCC-E-EECEECTTTCCEESSHHHHH
T ss_pred CCcCcCCCCCcC-C-CccccCcCCCCCccChHHHH
Confidence 468999986210 1 569999999876654 5543
No 188
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.65 E-value=32 Score=21.95 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=18.2
Q ss_pred cceeccccccccc------------CCcceeEEeCCCCee
Q 040047 138 SSYVCDICHKQLD------------QKCFWSYNCFACNFH 165 (240)
Q Consensus 138 ~~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~ 165 (240)
..+.|+.|++... .+ .-.|.|..|+-.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~C~k~ 41 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLG-YRPRSCPECGKC 41 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHT-CCCEECTTTCCE
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCC-CcCeECCCCCCC
Confidence 3578999998532 12 347899998744
No 189
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.49 E-value=43 Score=21.17 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=24.7
Q ss_pred eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
.|.|..|+|.+-..=.+....| -|.-++.-+ ...+.|-.|+..-
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi----~pGt~f~~l------P~dw~CP~Cg~~K 46 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGI----KPGTKFEDL------PDDWACPVCGASK 46 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTC----CSSCCTTSS------CTTCCCSSSCCCT
T ss_pred cEEeCCCCeEEcCCcCCcccCc----CCCCchHHC------CCCCcCCCCCCcH
Confidence 5999999987654433322222 222222211 1378999999753
No 190
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=27.43 E-value=37 Score=20.51 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=25.1
Q ss_pred cceecccccccccCCcceeEEeCCCCeeeecccccC
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN 173 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~ 173 (240)
....|.+|-.....+ .....-..|+-.+|..|+..
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~ 38 (55)
T 1iym_A 4 DGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDM 38 (55)
T ss_dssp CSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHH
T ss_pred CCCcCccCCccccCC-CceEECCCCCCcccHHHHHH
Confidence 456899999887543 33444456999999999854
No 191
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=27.19 E-value=36 Score=21.75 Aligned_cols=34 Identities=24% Similarity=0.577 Sum_probs=26.3
Q ss_pred CCcccccccccCCC-CceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIIS-GSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~-g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
+....|.+|...+. +.......|+..+|..|...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQ 46 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHH
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHH
Confidence 36788999988764 34566678999999999873
No 192
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.91 E-value=53 Score=21.61 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=27.6
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccC
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN 173 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~ 173 (240)
.....|.+|.+.--.. +..-.|..|..-++.+|-..
T Consensus 7 ~d~~~C~iC~KTKFAD-G~Gh~C~yCk~r~CaRCGg~ 42 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD-GCGHNCSYCQTKFCARCGGR 42 (62)
T ss_dssp SCCCCCSSSSCSCCCS-SCCEEBTTTCCEECTTSEEE
T ss_pred CCcchhhhhccceecc-CCCccccccCCeeecccCCE
Confidence 3567999999964333 67889999999999998543
No 193
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.12 E-value=44 Score=20.94 Aligned_cols=25 Identities=24% Similarity=0.622 Sum_probs=18.8
Q ss_pred CccccccCCCC----CceeEEcCCCCccc
Q 040047 79 NFLCNACGEPG----SAFSFCCPLCDFDL 103 (240)
Q Consensus 79 ~~~Cd~C~~~~----~g~~Y~C~~C~f~l 103 (240)
...|..||..+ ...++.|..|+|..
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 57899998753 35689999998753
No 194
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.10 E-value=35 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.5
Q ss_pred CCCccccccC-CCCCceeEEcCCC
Q 040047 77 AGNFLCNACG-EPGSAFSFCCPLC 99 (240)
Q Consensus 77 ~~~~~Cd~C~-~~~~g~~Y~C~~C 99 (240)
.....|.+|| ..+...+|.|.+|
T Consensus 55 ~~~~rCIiCg~~~g~~dAYYC~eC 78 (109)
T 2k0a_A 55 KQAKNCIICNLNVGVNDAFYCWEC 78 (109)
T ss_dssp STTSBCTTTSSSBCCEECEECHHH
T ss_pred CcCCceEEcCCCCCcccceehHhh
Confidence 3467899999 6667889999887
No 195
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=25.77 E-value=32 Score=20.42 Aligned_cols=27 Identities=30% Similarity=0.579 Sum_probs=16.4
Q ss_pred cceeccccccccc------------CCcceeEEeCCCCee
Q 040047 138 SSYVCDICHKQLD------------QKCFWSYNCFACNFH 165 (240)
Q Consensus 138 ~~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~ 165 (240)
..+.|..|++... .+ ...|.|..|+..
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~ 41 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTG-EKPYKCEFCEYA 41 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHC-CCCEECSSSSCE
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCC-CCCcCCCCCcch
Confidence 3578888888532 11 236888888754
No 196
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=25.76 E-value=24 Score=26.04 Aligned_cols=24 Identities=21% Similarity=0.567 Sum_probs=12.6
Q ss_pred cceecccccccccCCcceeE-EeCCC
Q 040047 138 SSYVCDICHKQLDQKCFWSY-NCFAC 162 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y-~C~~C 162 (240)
..++|..|+...... ...+ .|..|
T Consensus 72 ~~~~C~~CG~~~e~~-~~~~~~CP~C 96 (119)
T 2kdx_A 72 VELECKDCSHVFKPN-ALDYGVCEKC 96 (119)
T ss_dssp CEEECSSSSCEECSC-CSTTCCCSSS
T ss_pred ceEEcCCCCCEEeCC-CCCCCcCccc
Confidence 456666666654433 3344 45555
No 197
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.30 E-value=50 Score=22.08 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=27.1
Q ss_pred CCcccccccccCCCCceEeeCCCC---Ccchhhhccccc
Q 040047 20 GNEYSCSACELIISGSAYGCWECK---FFLHEQCGNASR 55 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~C~---f~lH~~Ca~~p~ 55 (240)
++...|- |...-.|.--.|..|| --+|..|+.+..
T Consensus 4 ~~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~ 41 (70)
T 1x4i_A 4 GSSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE 41 (70)
T ss_dssp SCCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS
T ss_pred CCCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc
Confidence 4667785 8887677778899876 689999999653
No 198
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=25.23 E-value=46 Score=19.64 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=7.0
Q ss_pred eeEEeCCCCee
Q 040047 155 WSYNCFACNFH 165 (240)
Q Consensus 155 ~~Y~C~~C~~~ 165 (240)
..|.|..|+..
T Consensus 28 ~~~~C~~C~~~ 38 (57)
T 1bbo_A 28 RPYHCTYCNFS 38 (57)
T ss_dssp CCEECSSSSCE
T ss_pred CCccCCCCCch
Confidence 45777777643
No 199
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.93 E-value=32 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.523 Sum_probs=17.5
Q ss_pred CcccccccccCC----------CC-ceEeeCCCCCc
Q 040047 21 NEYSCSACELII----------SG-SAYGCWECKFF 45 (240)
Q Consensus 21 ~~~~C~~C~~~~----------~g-~~Y~C~~C~f~ 45 (240)
.++.|+.|+... .| ..|.|..|+..
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 678999997642 12 36999999753
No 200
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.90 E-value=55 Score=21.91 Aligned_cols=50 Identities=24% Similarity=0.721 Sum_probs=36.4
Q ss_pred CCcccccccccCCCCceEeeCC--CCC-cchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 20 GNEYSCSACELIISGSAYGCWE--CKF-FLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 20 ~~~~~C~~C~~~~~g~~Y~C~~--C~f-~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
+....| .|+.+-.|.--.|.. |.. -+|..|+.+... | .+.+.|..|....
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~------p-------------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTK------P-------------RGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSC------C-------------SSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcC------C-------------CCCEECCCCCccc
Confidence 467888 798876677788998 664 899999985421 1 1468888887643
No 201
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.61 E-value=46 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.494 Sum_probs=25.2
Q ss_pred eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
.|.|..|+|.+...=.+....|. |.-++.-+ | ..+.|-.|+..-
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~----pGt~f~~l--P----~dw~CP~Cga~K 46 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIP----AGTRWEDI--P----ADWVCPDCGVGK 46 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBC----TTCCGGGS--C----TTCCCTTTCCCG
T ss_pred cEEeCCCCeEECCCcCCcccCcC----CCCChhHC--C----CCCcCCCCCCCH
Confidence 59999999886554333222222 22232211 2 378999999753
No 202
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.15 E-value=43 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=29.7
Q ss_pred eecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
..|..|++..+.- .....|..||..++..|......
T Consensus 162 ~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~~~~ 197 (220)
T 1dvp_A 162 RVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQCP 197 (220)
T ss_dssp SBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEEEE
T ss_pred CccCCCCCccCCc-ccccccCCcCCEEChHHhCCeee
Confidence 5899999987643 56899999999999999876543
No 203
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.79 E-value=60 Score=23.46 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=6.0
Q ss_pred ccccccccCCC
Q 040047 23 YSCSACELIIS 33 (240)
Q Consensus 23 ~~C~~C~~~~~ 33 (240)
..|.+|+++|.
T Consensus 4 ~~C~~C~~~I~ 14 (126)
T 2xqn_T 4 PRCAGCDELIF 14 (126)
T ss_dssp CBBTTTSSBCC
T ss_pred CCCccCCCEeC
Confidence 35666655553
No 204
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.68 E-value=42 Score=23.45 Aligned_cols=45 Identities=18% Similarity=0.443 Sum_probs=26.1
Q ss_pred ceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 35 SAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 35 ~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
..|.|..|+|.+-..=.+....|. |.-+|.- . ...+.|-.|+..-
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~----pGT~fed--l----PddW~CPvCga~K 70 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIA----AGTRWDD--I----PDDWSCPDCGAAK 70 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBC----TTCCTTT--S----CTTCCCTTTCCCG
T ss_pred ceEEeCCCCEEEcCCcCCcccCcC----CCCChhH--C----CCCCcCCCCCCCH
Confidence 379999999887654433322222 2212211 1 1378999999753
No 205
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=23.67 E-value=23 Score=32.06 Aligned_cols=61 Identities=23% Similarity=0.451 Sum_probs=37.4
Q ss_pred ccccccCCCCCceeEEcCCCCcccccccccCCceeeeC-CCceeeEEeecCCccCCCCccceecccccccccC
Q 040047 80 FLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHD-SHFHSLNLSYALPAAHHYESSSYVCDICHKQLDQ 151 (240)
Q Consensus 80 ~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~-~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~ 151 (240)
..|..|........|.|..|++. .|....-...|. ...|++.+.... ...+|-.|+..+..
T Consensus 49 ~~C~~c~~~~~~~~~~cl~cg~~---~c~~~~h~~~H~~~~~h~~~~~~~~--------~~~~c~~~~~~v~d 110 (476)
T 3mhs_A 49 MKCGTCHEINSGATFMCLQCGFC---GCWNHSHFLSHSKQIGHIFGINSNN--------GLLFCFKCEDYIGN 110 (476)
T ss_dssp SBCTTTCCBCSSSEEEESSSSCE---EETTTTHHHHHHHHHCCCEEEETTT--------CCEEETTTTEEECS
T ss_pred CCcccccCCCCCCceEeCCCCCC---ccCCchHHHHHhcccCCcEEEECCC--------CcEEeCCCCCCccc
Confidence 46999987655667999999944 454321112231 112777765542 46788888877653
No 206
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.40 E-value=51 Score=20.84 Aligned_cols=44 Identities=20% Similarity=0.627 Sum_probs=24.9
Q ss_pred eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
.|.|..|++.+-..=.+....|. |.-++.-+ | ..+.|-.|+..-
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~----pGt~f~~l--P----~dw~CP~Cg~~K 45 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGIS----PGTKFEDL--P----DDWVCPLCGAPK 45 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBC----TTCCGGGS--C----TTCBCTTTCCBG
T ss_pred cEEeCCCCeEECCCcCCcccCcC----CCCCHhHC--C----CCCcCCCCCCCH
Confidence 58999999876544333222222 22232211 2 378999999753
No 207
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.27 E-value=44 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=29.5
Q ss_pred eecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047 140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN 176 (240)
Q Consensus 140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~ 176 (240)
..|..|++..+.- ...+.|..||..++..|......
T Consensus 165 ~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~~~~ 200 (226)
T 3zyq_A 165 EECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSKYST 200 (226)
T ss_dssp SBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCEEEE
T ss_pred CCCcCcCCCCCcc-ccccccCCCcCEeChhhcCCccc
Confidence 4899999987643 56899999999999999876543
No 208
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.40 E-value=59 Score=20.24 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=19.1
Q ss_pred cceeccccccccc------------CCcceeEEeCCCCeee
Q 040047 138 SSYVCDICHKQLD------------QKCFWSYNCFACNFHA 166 (240)
Q Consensus 138 ~~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~l 166 (240)
..+.|.+|++... .+ ...|.|..|+..+
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C~~~f 47 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCT-DRPFKCNYCSFDT 47 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCC-SCSEECSSSSCEE
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCC-CCCEeCCCCCCcc
Confidence 5689999998532 12 3469999997644
No 209
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.15 E-value=33 Score=26.56 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=7.2
Q ss_pred ceeEEeCCCC
Q 040047 154 FWSYNCFACN 163 (240)
Q Consensus 154 ~~~Y~C~~C~ 163 (240)
.|.|+|..|+
T Consensus 130 ~~~y~C~~Cg 139 (165)
T 2lcq_A 130 KWRYVCIGCG 139 (165)
T ss_dssp CCCEEESSSC
T ss_pred cEEEECCCCC
Confidence 5777777775
No 210
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.12 E-value=26 Score=22.99 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCcccccccccCCC-CceEeeCCCCCcchhhhccc
Q 040047 20 GNEYSCSACELIIS-GSAYGCWECKFFLHEQCGNA 53 (240)
Q Consensus 20 ~~~~~C~~C~~~~~-g~~Y~C~~C~f~lH~~Ca~~ 53 (240)
+....|.+|.+.+. +..+....|+..+|..|...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDK 55 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHH
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHH
Confidence 36688999988764 44567778999999999873
No 211
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=21.86 E-value=1.1e+02 Score=16.66 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 040047 210 EDPVLEAQLELQRLQLEMQMAQELA 234 (240)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (240)
++++--||.-+++-|+.+|-++++-
T Consensus 4 esaleyaqqalekaqlalqaarqal 28 (30)
T 3s0r_A 4 ESALEYAQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445557888888888888777654
No 212
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=21.81 E-value=14 Score=33.53 Aligned_cols=61 Identities=25% Similarity=0.494 Sum_probs=38.0
Q ss_pred cccccccccCCCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 22 EYSCSACELIISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 22 ~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
...|..|.....+..|-|..|++.-+- ...-...|.....|++.+... .+...|-.|+..+
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~---~~~h~~~H~~~~~h~~~~~~~----~~~~~c~~~~~~v 108 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCW---NHSHFLSHSKQIGHIFGINSN----NGLLFCFKCEDYI 108 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEET---TTTHHHHHHHHHCCCEEEETT----TCCEEETTTTEEE
T ss_pred CCCcccccCCCCCCceEeCCCCCCccC---CchHHHHHhcccCCcEEEECC----CCcEEeCCCCCCc
Confidence 356999987755567999999966543 322233454334688877432 2456676666544
No 213
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.77 E-value=53 Score=19.63 Aligned_cols=25 Identities=28% Similarity=0.777 Sum_probs=14.7
Q ss_pred eeccccccccc------------CCcceeEEeCCCCee
Q 040047 140 YVCDICHKQLD------------QKCFWSYNCFACNFH 165 (240)
Q Consensus 140 ~~C~vC~~~~~------------~~~~~~Y~C~~C~~~ 165 (240)
+.|..|++... .+ ...|.|..|+..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~ 39 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRA 39 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTS-SCSEECTTTCCE
T ss_pred CcCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCc
Confidence 56777776422 11 346788877654
No 214
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.54 E-value=56 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=19.2
Q ss_pred cceeccccccccc------------CCcceeEEeCCCCeee
Q 040047 138 SSYVCDICHKQLD------------QKCFWSYNCFACNFHA 166 (240)
Q Consensus 138 ~~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~l 166 (240)
..+.|.+|++... .+ ...|.|..|+..+
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~~C~~C~~~f 52 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTG-EKPYKCLECGKAF 52 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGC-SCCEECSSSCCEE
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCC-CCCeECCCCCccc
Confidence 4689999998532 12 3479999997543
No 215
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.52 E-value=45 Score=22.43 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=23.9
Q ss_pred cceecccccccccCCcceeEEeCCC-CeeeecccccCcc
Q 040047 138 SSYVCDICHKQLDQKCFWSYNCFAC-NFHAHVSCTRNRN 175 (240)
Q Consensus 138 ~~~~C~vC~~~~~~~~~~~Y~C~~C-~~~lH~~C~~~~~ 175 (240)
...+|.+|... ..++|..| +=.++.+|.....
T Consensus 7 e~pWC~ICneD------AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED------ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC------CCEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCC------CeEEecCCCCceehHHHHHHHc
Confidence 45689999985 36899999 5667888865443
No 216
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.16 E-value=53 Score=23.31 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=26.8
Q ss_pred CCCccccccCCCCCceeEEcCC--CCc-ccccccccCC
Q 040047 77 AGNFLCNACGEPGSAFSFCCPL--CDF-DLHVQCAFLP 111 (240)
Q Consensus 77 ~~~~~Cd~C~~~~~g~~Y~C~~--C~f-~lH~~Ca~lP 111 (240)
.....| .|++...+..-.|.. |.+ .+|..|+.++
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~ 70 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT 70 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCS
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcC
Confidence 346788 999876678888999 654 6999999865
No 217
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=21.04 E-value=1.3e+02 Score=19.00 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 040047 208 EIEDPVLEAQLELQRLQLEMQMAQ 231 (240)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~ 231 (240)
+.+..-|+||-+|=|..-|++-|+
T Consensus 5 ~~~aqEi~Aqe~iLr~ErELEeAr 28 (50)
T 2qdq_A 5 GGIAQIIAAQEEMLRKERELEEAR 28 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877776665554
No 218
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.93 E-value=40 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=28.0
Q ss_pred ccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047 137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN 175 (240)
Q Consensus 137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~ 175 (240)
+....|.+|+.. +-.+-|..|.-.+|..|+..+.
T Consensus 61 g~~d~C~vC~~G-----G~LlcCD~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 61 GMDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNL 94 (142)
T ss_dssp SCBCSCSSSCCC-----SSEEECSSSCCEEEHHHHHHHT
T ss_pred CCCCeecccCCC-----CcEEeCCCCCCeeeHhhcCCCC
Confidence 356789999985 4589999999999999997444
No 219
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.81 E-value=58 Score=21.94 Aligned_cols=45 Identities=22% Similarity=0.610 Sum_probs=25.4
Q ss_pred ceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047 35 SAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG 89 (240)
Q Consensus 35 ~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~ 89 (240)
..|.|..|++.+...=.+....|. |.-++.-+ | ..+.|-.|+..-
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~----pGT~f~~l--P----ddw~CP~Cga~K 50 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIP----PGTPFVDL--S----DSFMCPACRSPK 50 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCC----SSCCGGGS--C----TTCBCTTTCCBG
T ss_pred ceEEeCCCCEEEcCCCCCcccCcC----CCCchhhC--C----CCCcCCCCCCCH
Confidence 369999999886544333222222 22232211 2 378999998753
No 220
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.51 E-value=64 Score=20.34 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=19.5
Q ss_pred ccceeccccccccc------------CCcceeEEeCCCCee
Q 040047 137 SSSYVCDICHKQLD------------QKCFWSYNCFACNFH 165 (240)
Q Consensus 137 ~~~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~ 165 (240)
...+.|..|++... .+ ...|.|..|+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~-~~~~~C~~C~k~ 54 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQ 54 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCC-CCSEECTTTCCE
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCC-CCCEECCCCCch
Confidence 35689999998642 12 346999999754
No 221
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=20.29 E-value=56 Score=18.84 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=19.1
Q ss_pred cCCCCCceeEEcCCCCcccccccccC
Q 040047 85 CGEPGSAFSFCCPLCDFDLHVQCAFL 110 (240)
Q Consensus 85 C~~~~~g~~Y~C~~C~f~lH~~Ca~l 110 (240)
|........|.|..++--++..|...
T Consensus 6 C~~H~e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 6 CSEHDERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCSSCSSCCCCCCSSSSSSCCTTSSC
T ss_pred chhhCCeeeEEeCCCCeEEeccCCCC
Confidence 55555566678888888888888763
Done!