Query         040047
Match_columns 240
No_of_seqs    148 out of 848
Neff          7.1 
Searched_HMMs 13730
Date          Mon Mar 25 06:50:52 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040047hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1v5na_ g.49.1.3 (A:) Pdi-like  99.8   8E-21 5.8E-25  138.5   1.8   79   32-115     5-83  (89)
  2 d1v5na_ g.49.1.3 (A:) Pdi-like  99.6 9.8E-17 7.1E-21  116.6   2.1   82   90-183     6-88  (89)
  3 d2dipa1 g.44.1.6 (A:8-92) Zinc  98.1 5.9E-07 4.3E-11   63.5   2.9   46   21-72     23-70  (85)
  4 d2fc7a1 g.44.1.6 (A:8-76) Zinc  97.9 4.9E-06 3.6E-10   56.3   4.1   48   21-70     13-66  (69)
  5 d1tota1 g.44.1.6 (A:1-52) CREB  97.8 3.3E-06 2.4E-10   54.0   1.7   42   22-71      6-48  (52)
  6 d2fc7a1 g.44.1.6 (A:8-76) Zinc  97.7 9.5E-06   7E-10   54.9   3.6   47   79-127    14-67  (69)
  7 d1xa6a3 g.49.1.1 (A:209-270) B  97.7 1.3E-05 9.5E-10   52.9   4.1   46    6-53      1-49  (62)
  8 d1tbna_ g.49.1.1 (A:) Protein   97.7 1.2E-05 8.7E-10   53.7   3.4   46    6-53      5-53  (66)
  9 d1faqa_ g.49.1.1 (A:) RAF-1 {H  97.5   3E-05 2.2E-09   49.3   3.5   43    8-53      2-44  (52)
 10 d1ptqa_ g.49.1.1 (A:) Protein   97.5 2.9E-05 2.1E-09   48.9   3.0   42   10-53      1-45  (50)
 11 d1tota1 g.44.1.6 (A:1-52) CREB  97.4 1.3E-05 9.1E-10   51.2   0.1   40   79-125     6-46  (52)
 12 d2dipa1 g.44.1.6 (A:8-92) Zinc  97.2 6.5E-05 4.8E-09   52.6   2.5   43   79-127    24-69  (85)
 13 d1kbea_ g.49.1.1 (A:) Kinase s  97.2 8.5E-05 6.2E-09   46.6   2.8   41    9-53      4-44  (49)
 14 d1tbna_ g.49.1.1 (A:) Protein   96.8 0.00078 5.7E-08   44.4   4.8   49  119-175     7-55  (66)
 15 d1faqa_ g.49.1.1 (A:) RAF-1 {H  96.8 0.00049 3.5E-08   43.4   3.3   42   64-110     3-44  (52)
 16 d1r79a_ g.49.1.1 (A:) Diacylgl  96.7  0.0004 2.9E-08   48.2   2.5   44    8-53     26-73  (84)
 17 d1ptqa_ g.49.1.1 (A:) Protein   96.5 0.00089 6.5E-08   41.7   3.2   42   65-110     1-45  (50)
 18 d1xa6a3 g.49.1.1 (A:209-270) B  96.2  0.0018 1.3E-07   42.0   3.6   37  139-175    15-51  (62)
 19 d1kbea_ g.49.1.1 (A:) Kinase s  96.1  0.0031 2.3E-07   39.1   3.9   29   81-110    16-44  (49)
 20 d1r79a_ g.49.1.1 (A:) Diacylgl  94.9  0.0056 4.1E-07   42.2   2.1   41   65-109    28-72  (84)
 21 d1we9a_ g.50.1.2 (A:) PHD fing  88.7    0.25 1.8E-05   31.3   4.1   38  137-175     4-41  (64)
 22 d1f62a_ g.50.1.2 (A:) Williams  84.2     0.2 1.4E-05   30.3   1.6   34  141-176     2-35  (51)
 23 d1f62a_ g.50.1.2 (A:) Williams  82.5    0.29 2.1E-05   29.5   1.9   31   81-111     2-33  (51)
 24 d1z60a1 g.49.1.2 (A:328-386) T  79.9    0.39 2.8E-05   30.3   1.8   34   20-53     13-47  (59)
 25 d1we9a_ g.50.1.2 (A:) PHD fing  78.7    0.93 6.8E-05   28.4   3.5   34   78-111     5-40  (64)
 26 d1weva_ g.50.1.2 (A:) PHD fing  77.9    0.99 7.2E-05   30.1   3.6   38  138-175    15-52  (88)
 27 d1joca1 g.50.1.1 (A:1348-1411)  75.2    0.49 3.6E-05   30.1   1.3   33   21-53      7-41  (64)
 28 d1weea_ g.50.1.2 (A:) PHD fing  73.1     2.3 0.00016   27.1   4.3   35  139-175    16-50  (72)
 29 d1mm2a_ g.50.1.2 (A:) Mi2-beta  68.1     1.2   9E-05   27.6   2.0   33  138-175     8-40  (61)
 30 d1fp0a1 g.50.1.2 (A:19-88) Nuc  68.1     1.7 0.00012   27.8   2.7   33  138-175     6-38  (70)
 31 d1z60a1 g.49.1.2 (A:328-386) T  67.4     1.1 7.9E-05   28.1   1.5   33   78-110    14-47  (59)
 32 d1weoa_ g.44.1.1 (A:) Cellulos  66.2     1.2 8.8E-05   30.0   1.7   34   77-110    14-52  (93)
 33 d1wema_ g.50.1.2 (A:) Death as  66.0     1.9 0.00014   27.7   2.7   34   78-112    15-49  (76)
 34 d1wema_ g.50.1.2 (A:) Death as  63.3     1.9 0.00014   27.7   2.2   35  138-175    15-49  (76)
 35 d1fp0a1 g.50.1.2 (A:19-88) Nuc  62.7     3.2 0.00023   26.3   3.3   32   78-111     6-37  (70)
 36 d1weva_ g.50.1.2 (A:) PHD fing  61.8     2.9 0.00021   27.6   3.0   33   79-111    16-51  (88)
 37 d1wepa_ g.50.1.2 (A:) PHD fing  61.2     1.9 0.00014   28.1   2.0   35  139-175    12-46  (79)
 38 d1weoa_ g.44.1.1 (A:) Cellulos  58.6     1.7 0.00012   29.3   1.3   36   21-56     15-55  (93)
 39 d1mm2a_ g.50.1.2 (A:) Mi2-beta  56.9     3.1 0.00023   25.6   2.4   32   78-111     8-39  (61)
 40 d1y02a2 g.50.1.1 (A:20-70) Rif  54.6     3.2 0.00023   24.9   2.0   32  141-173     2-33  (51)
 41 d1y02a2 g.50.1.1 (A:20-70) Rif  52.6     4.1  0.0003   24.4   2.3   29   24-52      2-32  (51)
 42 d1zbdb_ g.50.1.1 (B:) Effector  50.0     6.3 0.00046   27.7   3.4   35  138-173    47-82  (124)
 43 d1wfka_ g.50.1.1 (A:) Zinc fin  49.8     6.6 0.00048   26.1   3.3   39  137-176     7-45  (88)
 44 d1wepa_ g.50.1.2 (A:) PHD fing  49.7     4.3 0.00031   26.3   2.2   32   79-111    12-45  (79)
 45 d1j2oa1 g.39.1.3 (A:1-30) Rhom  49.6     5.2 0.00038   21.4   2.1   28   21-49      2-29  (30)
 46 d1dvpa2 g.50.1.1 (A:149-220) H  48.9     5.5  0.0004   25.4   2.6   36  140-176    14-49  (72)
 47 d1rutx3 g.39.1.3 (X:83-113) LI  48.8     8.8 0.00064   20.6   3.0   29  140-171     3-31  (31)
 48 d1joca1 g.50.1.1 (A:1348-1411)  48.6     6.3 0.00046   24.5   2.8   38  138-176     7-44  (64)
 49 d2dkta2 g.93.1.1 (A:82-137) RI  48.1     3.8 0.00027   25.3   1.6    7   94-100    18-24  (56)
 50 d1zbdb_ g.50.1.1 (B:) Effector  47.9     6.2 0.00045   27.7   3.1   60   77-157    46-112 (124)
 51 d1weea_ g.50.1.2 (A:) PHD fing  46.3     6.6 0.00048   24.7   2.7   31   80-111    17-49  (72)
 52 d1vfya_ g.50.1.1 (A:) vps27p p  45.9     5.7 0.00042   24.9   2.3   30   24-53      7-38  (67)
 53 d1vfya_ g.50.1.1 (A:) vps27p p  44.9     6.5 0.00048   24.6   2.5   35  141-176     7-41  (67)
 54 d1dvpa2 g.50.1.1 (A:149-220) H  44.3     5.4 0.00039   25.5   2.0   31   23-53     14-46  (72)
 55 d1wewa_ g.50.1.2 (A:) Sumoylat  43.7     8.3  0.0006   24.7   2.9   33   78-111    15-50  (78)
 56 d1wfka_ g.50.1.1 (A:) Zinc fin  42.9      11 0.00078   25.0   3.5   33   77-109     7-41  (88)
 57 d2jnea1 g.41.18.1 (A:1-71) Hyp  42.7     4.2 0.00031   26.2   1.2   21  141-162     4-24  (71)
 58 d1wiga1 g.39.1.3 (A:1-32) Acti  42.2       8 0.00059   20.5   2.1   30   77-108     3-32  (32)
 59 d1wila_ g.50.1.3 (A:) Hypothet  41.6     5.3 0.00038   26.6   1.6   33   21-53     14-46  (89)
 60 d1x4sa1 g.85.1.2 (A:8-53) Zinc  40.3       6 0.00044   23.3   1.6   27  140-171     8-35  (46)
 61 d1bboa2 g.37.1.1 (A:29-57) Enh  39.9     4.8 0.00035   21.0   0.9   12   36-47      1-12  (29)
 62 d2dida1 g.43.1.1 (A:8-47) Trip  39.0     7.3 0.00053   21.9   1.8   28   84-111     3-30  (40)
 63 d1wjva1 g.37.1.2 (A:1-35) Cell  38.9     1.9 0.00014   23.7  -0.8   13   21-33      9-21  (35)
 64 d1frea_ g.43.1.1 (A:) Nuclear   36.9       9 0.00066   21.3   2.0   33   84-119     2-34  (39)
 65 d1iyma_ g.44.1.1 (A:) EL5 RING  36.9     9.7 0.00071   22.7   2.3   37  138-175     4-40  (55)
 66 d1iroa_ g.41.5.1 (A:) Rubredox  36.7      10 0.00076   22.8   2.3   44   36-89      3-46  (53)
 67 d1rutx1 g.39.1.3 (X:19-48) LIM  35.8     7.9 0.00057   20.6   1.4   28   22-50      2-29  (30)
 68 d1a1ia3 g.37.1.1 (A:160-187) Z  32.8       5 0.00036   20.9   0.3   11   79-89      3-13  (28)
 69 d1wesa_ g.50.1.2 (A:) PHD Inhi  32.7      11 0.00077   23.9   2.0   33  139-175    16-51  (71)
 70 d1wfla_ g.80.1.1 (A:) Zinc fin  32.0     8.1 0.00059   25.0   1.3   28   21-49     24-51  (74)
 71 d1brfa_ g.41.5.1 (A:) Rubredox  31.0      16  0.0011   22.0   2.5   44   36-89      2-45  (53)
 72 d1wfha_ g.80.1.1 (A:) Zinc fin  30.4      12 0.00087   23.5   1.9   29   21-50     14-42  (64)
 73 d2pnxa1 g.50.1.2 (A:195-245) I  28.1      21  0.0016   20.7   2.8   31   80-111     3-36  (51)
 74 d2csha1 g.37.1.1 (A:8-60) Zinc  27.5      17  0.0013   21.0   2.2   25  139-165     3-39  (53)
 75 d1dx8a_ g.41.5.1 (A:) Rubredox  27.2      21  0.0016   22.6   2.7   45   34-88      5-49  (70)
 76 d1wila_ g.50.1.3 (A:) Hypothet  26.3     8.9 0.00065   25.4   0.7   63   78-148    14-76  (89)
 77 d1v6ga1 g.39.1.3 (A:1-41) Acti  24.4      21  0.0015   20.2   2.0   27   79-107    15-41  (41)
 78 d1x61a1 g.39.1.3 (A:8-34) Thyr  23.8      16  0.0011   18.3   1.2   11   25-35      1-11  (27)
 79 d1wffa_ g.80.1.1 (A:) ANUBL1 (  23.7      23  0.0016   23.4   2.4   30   21-51     24-54  (85)
 80 d2dsxa1 g.41.5.1 (A:1-52) Rubr  23.6      24  0.0017   21.0   2.3   44   36-89      3-46  (52)
 81 d1s24a_ g.41.5.1 (A:) Two-iron  23.5      19  0.0014   21.8   1.9   44   36-89      4-47  (56)
 82 d2cuqa1 g.39.1.3 (A:43-74) Fou  23.5      16  0.0012   19.5   1.3   17   24-40      1-17  (32)
 83 d1twfl_ g.41.9.2 (L:) RBP12 su  23.4     7.6 0.00056   22.8  -0.1   25   79-103     4-31  (46)
 84 d1wfpa_ g.80.1.1 (A:) Zinc fin  23.3      19  0.0014   23.1   1.9   29   21-50     24-52  (74)
 85 d1vyxa_ g.44.1.3 (A:) IE1B pro  23.3       9 0.00066   23.0   0.2   34   20-53      4-40  (60)
 86 d2d8ua1 g.43.1.1 (A:8-58) Ubiq  22.4      13 0.00095   21.7   0.9   26   85-110     4-30  (51)
 87 d2dq5a1 g.43.1.1 (A:168-214) M  22.0      21  0.0015   20.4   1.7   26   85-110     8-34  (47)
 88 d2djaa1 g.43.1.1 (A:8-78) Midl  21.6      16  0.0012   22.6   1.2   21   90-110    20-40  (71)
 89 d1k3xa3 g.39.1.8 (A:223-262) E  21.2      40  0.0029   18.7   2.9   26   75-100     8-39  (40)
 90 d1x3ha1 g.39.1.3 (A:8-42) Leup  21.1      15  0.0011   20.0   0.9   14   22-35      8-21  (35)
 91 d1k82a3 g.39.1.8 (A:225-268) D  21.0      29  0.0021   19.7   2.2   25  137-162    14-42  (44)
 92 d1gg2g_ a.137.3.1 (G:) Transdu  20.9      28  0.0021   20.7   2.3   24  214-237     3-31  (54)

No 1  
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.79  E-value=8e-21  Score=138.49  Aligned_cols=79  Identities=29%  Similarity=0.538  Sum_probs=72.4

Q ss_pred             CCCceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047           32 ISGSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        32 ~~g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ..|..|+|.+|++.+|+.|+++|++|+|++||+|+|+|...+     .+.|++|++.+.+++|+|..|+|+||..||.+|
T Consensus         5 ~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~-----~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P   79 (89)
T d1v5na_           5 SSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQ-----VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNE   79 (89)
T ss_dssp             CCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCS-----SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCS
T ss_pred             CCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCC-----CCEeCCCCCCcCCcEeEeccCCCEecHHHcCCC
Confidence            356789999999999999999999999999999999997653     578999999999999999999999999999999


Q ss_pred             ceee
Q 040047          112 EILI  115 (240)
Q Consensus       112 ~~i~  115 (240)
                      .+++
T Consensus        80 ~~~~   83 (89)
T d1v5na_          80 DTKE   83 (89)
T ss_dssp             SCSS
T ss_pred             cccC
Confidence            8754


No 2  
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.59  E-value=9.8e-17  Score=116.55  Aligned_cols=82  Identities=26%  Similarity=0.483  Sum_probs=72.2

Q ss_pred             CceeEEcCCCCcccccccccCCceeeeCCCc-eeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeec
Q 040047           90 SAFSFCCPLCDFDLHVQCAFLPEILIHDSHF-HSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHV  168 (240)
Q Consensus        90 ~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~  168 (240)
                      .|..|+|.+|++.+|..|+.+|..|+|+.|+ |+|+|...         ..++|++|++.+.   +|+|+|..|+|++|+
T Consensus         6 ~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~---------~~~~C~~C~~~~~---g~~Y~C~~C~f~LH~   73 (89)
T d1v5na_           6 SGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRV---------QVYTCDKCEEEGT---IWSYHCDECDFDLHA   73 (89)
T ss_dssp             CCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECC---------SSCCCTTTSCCCC---SCEEECTTTCCCCCH
T ss_pred             CchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecC---------CCCEeCCCCCCcC---CcEeEeccCCCEecH
Confidence            4677899999999999999999999999997 99999764         3478999999864   899999999999999


Q ss_pred             ccccCccccCCCCCC
Q 040047          169 SCTRNRNNSDSAKPE  183 (240)
Q Consensus       169 ~C~~~~~~~~~~~p~  183 (240)
                      .||..+...++++|.
T Consensus        74 ~CA~~P~~~~~~p~~   88 (89)
T d1v5na_          74 KCALNEDTKESGPSS   88 (89)
T ss_dssp             HHHHCSSCSSCCCCC
T ss_pred             HHcCCCcccCCCCCC
Confidence            999999886666554


No 3  
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.11  E-value=5.9e-07  Score=63.52  Aligned_cols=46  Identities=28%  Similarity=0.652  Sum_probs=36.9

Q ss_pred             Cccccccccc-CCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEeec
Q 040047           21 NEYSCSACEL-IISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVPT   72 (240)
Q Consensus        21 ~~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~   72 (240)
                      ..+.||+|+. +|.|.+|+|..| ||||+..|...      ..|+.|++.+...
T Consensus        23 ~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~------~~h~~H~f~~~~~   70 (85)
T d2dipa1          23 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------YCHLSHTFTFREK   70 (85)
T ss_dssp             CCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT------TSGGGSCEEECCS
T ss_pred             CCeECCCCCCCCcCcceEEcCCCCCccchHHHHCc------CCCCCCCcceecC
Confidence            4578999965 689999999999 99999999763      3456788876544


No 4  
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.89  E-value=4.9e-06  Score=56.33  Aligned_cols=48  Identities=21%  Similarity=0.597  Sum_probs=37.5

Q ss_pred             CcccccccccC-CCCceEeeCCC----CCcchhhhccccccccCCCC-CCcceEEe
Q 040047           21 NEYSCSACELI-ISGSAYGCWEC----KFFLHEQCGNASRAMQHTSH-PMHHLTLV   70 (240)
Q Consensus        21 ~~~~C~~C~~~-~~g~~Y~C~~C----~f~lH~~Ca~~p~~i~h~~H-p~H~L~l~   70 (240)
                      ..+.||+|+.. |.|.+|+|..|    ||||+..|.....+.  ..| +.|+|..+
T Consensus        13 ~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~--~~H~~~H~~~~I   66 (69)
T d2fc7a1          13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHET--DIHKEDHQLEPI   66 (69)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCC--SSCCSSSCEEEE
T ss_pred             CCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccC--CCCCCCCCEEEe
Confidence            45899999774 79999999999    899999998866432  234 36888765


No 5  
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.79  E-value=3.3e-06  Score=54.02  Aligned_cols=42  Identities=26%  Similarity=0.607  Sum_probs=33.3

Q ss_pred             cccccccccCCCCceEeeCCC-CCcchhhhccccccccCCCCCCcceEEee
Q 040047           22 EYSCSACELIISGSAYGCWEC-KFFLHEQCGNASRAMQHTSHPMHHLTLVP   71 (240)
Q Consensus        22 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~   71 (240)
                      .+.||+|...+ |.+|+|..| ||||+..|....      .| .|+|+...
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~~------~H-~H~m~k~~   48 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTK------SH-THKMVKWG   48 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHH------CC-CSSEEEEC
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHhcCC------Cc-CCCeEEec
Confidence            46799998876 679999999 899999998642      35 37877653


No 6  
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.74  E-value=9.5e-06  Score=54.85  Aligned_cols=47  Identities=28%  Similarity=0.554  Sum_probs=37.2

Q ss_pred             CccccccCCC-CCceeEEcCCC----CcccccccccCCceeeeCCCc--eeeEEee
Q 040047           79 NFLCNACGEP-GSAFSFCCPLC----DFDLHVQCAFLPEILIHDSHF--HSLNLSY  127 (240)
Q Consensus        79 ~~~Cd~C~~~-~~g~~Y~C~~C----~f~lH~~Ca~lP~~i~~~~H~--H~L~l~~  127 (240)
                      .+.||+|++. +.|.+|+|..|    ||||+..|.....  ....|.  |++..++
T Consensus        14 ~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~--~~~~H~~~H~~~~I~   67 (69)
T d2fc7a1          14 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH--ETDIHKEDHQLEPIY   67 (69)
T ss_dssp             SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC--CCSSCCSSSCEEEEC
T ss_pred             CeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcc--cCCCCCCCCCEEEee
Confidence            5799999997 57999999999    8999999986553  234454  8887655


No 7  
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.73  E-value=1.3e-05  Score=52.86  Aligned_cols=46  Identities=22%  Similarity=0.597  Sum_probs=39.2

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +..+|.+......  .+..|+.|.+.|+|.   +|.|..|++..|+.|.+.
T Consensus         1 ~~k~H~F~~~~~~--~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   49 (62)
T d1xa6a3           1 YEKTHNFKVHTFR--GPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKH   49 (62)
T ss_dssp             CCCCCCCCEECCS--SCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTT
T ss_pred             CCCCCEEEEeeCC--CCCCCcccCccccccccCeEEcCCCCchhhHHHHhh
Confidence            3567888887765  678999999999874   799999999999999875


No 8  
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=97.69  E-value=1.2e-05  Score=53.71  Aligned_cols=46  Identities=20%  Similarity=0.498  Sum_probs=38.9

Q ss_pred             CCCCCCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047            6 FSHPHNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         6 ~~H~H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |..+|.+......  .+..|+.|...|+|.   +|+|..|++..|+.|+..
T Consensus         5 p~~~H~F~~~~~~--~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~   53 (66)
T d1tbna_           5 PRNKHKFRLHSYS--SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRS   53 (66)
T ss_dssp             CCCSCCEEECCSS--SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTT
T ss_pred             CCCCCceEEEeCC--CCcCCcCCCCcccCcccCccccCcccCeEChHHhcc
Confidence            4567888877654  678999999999874   699999999999999985


No 9  
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.53  E-value=3e-05  Score=49.29  Aligned_cols=43  Identities=21%  Similarity=0.568  Sum_probs=36.9

Q ss_pred             CCCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047            8 HPHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         8 H~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ..|.+......  .+..|+.|++.|+ .+|+|..|++.+|++|.+.
T Consensus         2 ~~H~F~~~~f~--~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~   44 (52)
T d1faqa_           2 TTHNFARKTFL--KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCCEEECCS--SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             CceEEEEeeCC--CCcCCccCCCccc-cCCCcCCCCChhhhhhhcc
Confidence            35777777765  7899999999997 4799999999999999985


No 10 
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.49  E-value=2.9e-05  Score=48.85  Aligned_cols=42  Identities=21%  Similarity=0.649  Sum_probs=34.3

Q ss_pred             CCCeeeeecCCCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047           10 HNLRIYQVQHGNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        10 H~L~l~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      |.+......  .+..|+.|.+.|+|.   +|+|..|++..|+.|.+.
T Consensus         1 H~F~~~~~~--~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCS--SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEecCC--CCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            445555543  678999999999873   799999999999999884


No 11 
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.37  E-value=1.3e-05  Score=51.22  Aligned_cols=40  Identities=30%  Similarity=0.709  Sum_probs=32.3

Q ss_pred             CccccccCCCCCceeEEcCCC-CcccccccccCCceeeeCCCceeeEE
Q 040047           79 NFLCNACGEPGSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHFHSLNL  125 (240)
Q Consensus        79 ~~~Cd~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~H~L~l  125 (240)
                      .+.||.|.+.+ +.+|+|.+| ||||+..|...      ..|+|+|.-
T Consensus         6 ~~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~~~------~~H~H~m~k   46 (52)
T d1tota1           6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNT------KSHTHKMVK   46 (52)
T ss_dssp             CEEETTTTEEE-SSEEEESSSSSCEECHHHHHH------HCCCSSEEE
T ss_pred             EEECcCCCCcC-CCceECCCCCCcccHHHHhcC------CCcCCCeEE
Confidence            46899999876 679999999 99999999753      356787753


No 12 
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.22  E-value=6.5e-05  Score=52.63  Aligned_cols=43  Identities=21%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             CccccccCCC-CCceeEEcCCC-CcccccccccCCceeeeCCCc-eeeEEee
Q 040047           79 NFLCNACGEP-GSAFSFCCPLC-DFDLHVQCAFLPEILIHDSHF-HSLNLSY  127 (240)
Q Consensus        79 ~~~Cd~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~lP~~i~~~~H~-H~L~l~~  127 (240)
                      ...|++|++. +.|.+|+|..| ||||+..|....      .|. |++.+..
T Consensus        24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~------~h~~H~f~~~~   69 (85)
T d2dipa1          24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY------CHLSHTFTFRE   69 (85)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT------SGGGSCEEECC
T ss_pred             CeECCCCCCCCcCcceEEcCCCCCccchHHHHCcC------CCCCCCcceec
Confidence            5689999875 68999999999 999999997532      233 6665543


No 13 
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.22  E-value=8.5e-05  Score=46.63  Aligned_cols=41  Identities=17%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCCeeeeecCCCcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047            9 PHNLRIYQVQHGNEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         9 ~H~L~l~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +|.+......  .+. |+.|.+.|+ .+|+|.+|++..|+.|++.
T Consensus         4 ~H~F~~~~~~--~~t-C~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_           4 THRFSTKSWL--SQV-CNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCCEEEECCS--SCC-CSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             ccEEeecCcC--CCC-chhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            4666543332  344 999999997 5799999999999999985


No 14 
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}
Probab=96.80  E-value=0.00078  Score=44.44  Aligned_cols=49  Identities=24%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             CceeeEEeecCCccCCCCccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          119 HFHSLNLSYALPAAHHYESSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       119 H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      .+|.+......        ...+|++|++.+.+-...+|+|.+|++.+|.+|+....
T Consensus         7 ~~H~F~~~~~~--------~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   55 (66)
T d1tbna_           7 NKHKFRLHSYS--------SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVP   55 (66)
T ss_dssp             CSCCEEECCSS--------SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSC
T ss_pred             CCCceEEEeCC--------CCcCCcCCCCcccCcccCccccCcccCeEChHHhcccc
Confidence            34766554322        34689999998753113589999999999999987654


No 15 
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.76  E-value=0.00049  Score=43.38  Aligned_cols=42  Identities=19%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             CcceEEeeccCCCCCCccccccCCCCCceeEEcCCCCcccccccccC
Q 040047           64 MHHLTLVPTTTYSAGNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        64 ~H~L~l~~~~~~~~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|.|...+..    ....|+.|++.+. ..|+|..|++.+|.+|+..
T Consensus         3 ~H~F~~~~f~----~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~   44 (52)
T d1faqa_           3 THNFARKTFL----KLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTK   44 (52)
T ss_dssp             CCCCEEECCS----SCEECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred             ceEEEEeeCC----CCcCCccCCCccc-cCCCcCCCCChhhhhhhcc
Confidence            4777776543    4789999999874 4699999999999999964


No 16 
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.65  E-value=0.0004  Score=48.25  Aligned_cols=44  Identities=20%  Similarity=0.520  Sum_probs=35.2

Q ss_pred             CCCCCeeeeecCCCcccccccccCCCCc----eEeeCCCCCcchhhhccc
Q 040047            8 HPHNLRIYQVQHGNEYSCSACELIISGS----AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus         8 H~H~L~l~~~~~~~~~~C~~C~~~~~g~----~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .+|.+...+..  ....|+.|.+.|+|.    .|+|..|++.+|+.|.+.
T Consensus        26 ~~H~w~~~n~~--~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~   73 (84)
T d1r79a_          26 MPHQWLEGNLP--VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             BCCCEEESCCC--TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             CCceEEeCCCC--CCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence            35766554433  788999999998763    599999999999999984


No 17 
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.51  E-value=0.00089  Score=41.66  Aligned_cols=42  Identities=19%  Similarity=0.466  Sum_probs=32.8

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCc---eeEEcCCCCcccccccccC
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSA---FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |.|+..+..    ....|+.|++.+.|   ..|+|.+|++..|..|...
T Consensus         1 H~F~~~~~~----~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~   45 (50)
T d1ptqa_           1 HRFKVYNYM----SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK   45 (50)
T ss_dssp             CCEEEECCS----SCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred             CceEEecCC----CCcCCcccCCcccCcccCcEECCCCCCeeChhHccc
Confidence            456555432    46799999998754   4699999999999999863


No 18 
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.22  E-value=0.0018  Score=42.02  Aligned_cols=37  Identities=16%  Similarity=0.434  Sum_probs=29.3

Q ss_pred             ceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          139 SYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       139 ~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ..+|++|++.+.+-....|+|..|++..|.+|.....
T Consensus        15 pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~   51 (62)
T d1xa6a3          15 PHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVP   51 (62)
T ss_dssp             CCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTSC
T ss_pred             CCCCcccCccccccccCeEEcCCCCchhhHHHHhhCC
Confidence            4689999998753214689999999999999976543


No 19 
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.06  E-value=0.0031  Score=39.11  Aligned_cols=29  Identities=28%  Similarity=0.703  Sum_probs=25.6

Q ss_pred             cccccCCCCCceeEEcCCCCcccccccccC
Q 040047           81 LCNACGEPGSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        81 ~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .|+.|++.+. ..|+|.+|++.+|..|+..
T Consensus        16 tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_          16 VCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             CCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             Cchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            4999999885 5699999999999999864


No 20 
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.87  E-value=0.0056  Score=42.16  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             cceEEeeccCCCCCCccccccCCCCCc----eeEEcCCCCccccccccc
Q 040047           65 HHLTLVPTTTYSAGNFLCNACGEPGSA----FSFCCPLCDFDLHVQCAF  109 (240)
Q Consensus        65 H~L~l~~~~~~~~~~~~Cd~C~~~~~g----~~Y~C~~C~f~lH~~Ca~  109 (240)
                      |.|+....+    ...+|+.|++.+.+    ..|+|..|++.+|..|..
T Consensus        28 H~w~~~n~~----~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~   72 (84)
T d1r79a_          28 HQWLEGNLP----VSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE   72 (84)
T ss_dssp             CCEEESCCC----TTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred             ceEEeCCCC----CCCCCcccCcccCCccccCcEecCcCCchhhhhhcC
Confidence            677654432    36799999998743    359999999999999985


No 21 
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=88.72  E-value=0.25  Score=31.31  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             ccceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      .....|.+|++..+.. ...-.|..|+.-+|..|+..+.
T Consensus         4 ~~~~~C~~C~~~~~~~-~~~I~Cd~C~~w~H~~C~~~~~   41 (64)
T d1we9a_           4 GSSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITP   41 (64)
T ss_dssp             SSCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCT
T ss_pred             CCCCcCcCcCCCCCCC-CCEEEcCCCCccCCcccCCcCh
Confidence            3567999999976544 3345999999999999997544


No 22 
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.22  E-value=0.2  Score=30.32  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      +|.+|++..+.  ...-.|..|+-.+|..|+..+..
T Consensus         2 ~C~vC~~~~~~--~~~i~Cd~C~~~~H~~C~~p~~~   35 (51)
T d1f62a_           2 RCKVCRKKGED--DKLILCDECNKAFHLFCLRPALY   35 (51)
T ss_dssp             CCTTTCCSSCC--SCCEECTTTCCEECHHHHCTTCC
T ss_pred             CCcCcCCCCCC--CCEEEcCCCCCCCCCCCCCCCCC
Confidence            68999987653  34678999999999999976643


No 23 
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.53  E-value=0.29  Score=29.48  Aligned_cols=31  Identities=23%  Similarity=0.563  Sum_probs=25.9

Q ss_pred             cccccCCCCC-ceeEEcCCCCcccccccccCC
Q 040047           81 LCNACGEPGS-AFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        81 ~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      .|.+|++... +....|..|+-.+|..|...|
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~   33 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPA   33 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTT
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCC
Confidence            6889988764 566789999999999998765


No 24 
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.93  E-value=0.39  Score=30.30  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=27.7

Q ss_pred             CCcccccccccCCCC-ceEeeCCCCCcchhhhccc
Q 040047           20 GNEYSCSACELIISG-SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        20 ~~~~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +....|.||..++.. .+|.|..|..+++..|--.
T Consensus        13 ~~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~f   47 (59)
T d1z60a1          13 NGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF   47 (59)
T ss_dssp             CSCCEETTTTEECTTSEEECCTTTTCCBCHHHHHT
T ss_pred             CCCCCccCCCCcCCCCceEECcCCCCccccccchh
Confidence            356889999888754 4799999999999988764


No 25 
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=78.68  E-value=0.93  Score=28.38  Aligned_cols=34  Identities=35%  Similarity=0.852  Sum_probs=27.5

Q ss_pred             CCccccccCCCCC--ceeEEcCCCCcccccccccCC
Q 040047           78 GNFLCNACGEPGS--AFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        78 ~~~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ....|.+|++...  .....|..|+..+|..|..++
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~   40 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKIT   40 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCC
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcC
Confidence            4678999998653  345689999999999998764


No 26 
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.93  E-value=0.99  Score=30.11  Aligned_cols=38  Identities=16%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ...+|.+|++.........-.|..|+..+|..|+..+.
T Consensus        15 ~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~   52 (88)
T d1weva_          15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV   52 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCC
T ss_pred             CcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcc
Confidence            46789999986442213467799999999999987544


No 27 
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.21  E-value=0.49  Score=30.09  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             CcccccccccCCCC--ceEeeCCCCCcchhhhccc
Q 040047           21 NEYSCSACELIISG--SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        21 ~~~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      +...|..|..++.-  ..++|..|+..++..|...
T Consensus         7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~   41 (64)
T d1joca1           7 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK   41 (64)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred             cCCcCcCcCCcccCCccccchhhhCCeecccccCC
Confidence            55679999887533  3699999999999999864


No 28 
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=73.13  E-value=2.3  Score=27.10  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=27.2

Q ss_pred             ceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          139 SYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       139 ~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ...| +|++..+.+ ...-.|..|+.-+|..|+..+.
T Consensus        16 ~~~C-~C~~~~~~~-~~mv~Cd~C~~w~H~~C~g~~~   50 (72)
T d1weea_          16 KVDC-KCGTKDDDG-ERMLACDGCGVWHHTRCIGINN   50 (72)
T ss_dssp             EECC-TTCCCSCCS-SCEEECSSSCEEEETTTTTCCT
T ss_pred             eEEe-eCCCCcCCC-CeEEEeCCCCCcCchhhcCCcc
Confidence            3567 898866544 5577999999999999987654


No 29 
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.15  E-value=1.2  Score=27.62  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=26.1

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ...+|.+|+..     +....|..|+..+|..|+..+.
T Consensus         8 ~~~~C~~C~~~-----g~lv~Cd~C~~~~H~~C~~~~~   40 (61)
T d1mm2a_           8 HMEFCRVCKDG-----GELLCCDTCPSSYHIHCLNPPL   40 (61)
T ss_dssp             SCSSCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCC
T ss_pred             CcCCCcCCCCC-----CeEEEeCCCCccCchhhcCCCc
Confidence            45579999864     4478999999999999986544


No 30 
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.10  E-value=1.7  Score=27.77  Aligned_cols=33  Identities=27%  Similarity=0.561  Sum_probs=25.9

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ....|.+|++.     +-.-.|..|+..+|..|+..+.
T Consensus         6 ~c~~C~~C~~~-----~~ll~Cd~C~~~~H~~C~~p~l   38 (70)
T d1fp0a1           6 SATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPAL   38 (70)
T ss_dssp             SSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTC
T ss_pred             CCCCCCCCCCc-----CEEEECCCCChhhccccCCCCc
Confidence            45678888764     3478999999999999997543


No 31 
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.36  E-value=1.1  Score=28.14  Aligned_cols=33  Identities=21%  Similarity=0.646  Sum_probs=27.2

Q ss_pred             CCccccccCCCCC-ceeEEcCCCCcccccccccC
Q 040047           78 GNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        78 ~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      +...|.+|...+. ..+|+|..|.-.++..|-..
T Consensus        14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~f   47 (59)
T d1z60a1          14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF   47 (59)
T ss_dssp             SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHT
T ss_pred             CCCCccCCCCcCCCCceEECcCCCCccccccchh
Confidence            4688999998875 67899999998888888643


No 32 
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=66.16  E-value=1.2  Score=30.04  Aligned_cols=34  Identities=21%  Similarity=0.523  Sum_probs=27.4

Q ss_pred             CCCccccccCCCC----Cc-eeEEcCCCCcccccccccC
Q 040047           77 AGNFLCNACGEPG----SA-FSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        77 ~~~~~Cd~C~~~~----~g-~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      .....|.+||..+    .| .+..|.+|+|-++..|...
T Consensus        14 ~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEY   52 (93)
T d1weoa_          14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY   52 (93)
T ss_dssp             CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH
T ss_pred             cccchhhhcccccccCCCCCEEEEecccCCccchHHHHH
Confidence            3467999999976    23 5678999999999999753


No 33 
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.96  E-value=1.9  Score=27.67  Aligned_cols=34  Identities=29%  Similarity=0.805  Sum_probs=27.4

Q ss_pred             CCccccccCCCCC-ceeEEcCCCCcccccccccCCc
Q 040047           78 GNFLCNACGEPGS-AFSFCCPLCDFDLHVQCAFLPE  112 (240)
Q Consensus        78 ~~~~Cd~C~~~~~-g~~Y~C~~C~f~lH~~Ca~lP~  112 (240)
                      ....| +|++... +....|..|+..+|..|..++.
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~   49 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISE   49 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCH
T ss_pred             CcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCc
Confidence            35668 8998764 5678999999999999997653


No 34 
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=63.34  E-value=1.9  Score=27.67  Aligned_cols=35  Identities=20%  Similarity=0.484  Sum_probs=27.4

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ...+| +|++..+.  ...-.|..|+.-+|..|+..+.
T Consensus        15 ~~~~C-iC~~~~~~--~~mi~Cd~C~~w~H~~Cvg~~~   49 (76)
T d1wema_          15 NALYC-ICRQPHNN--RFMICCDRCEEWFHGDCVGISE   49 (76)
T ss_dssp             TCCCS-TTCCCCCS--SCEEECSSSCCEEEHHHHSCCH
T ss_pred             CcCEE-ECCCccCC--CeEEEECCCCCcCCccccCCCc
Confidence            45678 89987553  4578999999999999996544


No 35 
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.71  E-value=3.2  Score=26.33  Aligned_cols=32  Identities=25%  Similarity=0.764  Sum_probs=25.5

Q ss_pred             CCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047           78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      .-..|.+|++.  +....|..|+..+|..|...|
T Consensus         6 ~c~~C~~C~~~--~~ll~Cd~C~~~~H~~C~~p~   37 (70)
T d1fp0a1           6 SATICRVCQKP--GDLVMCNQCEFCFHLDCHLPA   37 (70)
T ss_dssp             SSSCCSSSCSS--SCCEECTTSSCEECTTSSSTT
T ss_pred             CCCCCCCCCCc--CEEEECCCCChhhccccCCCC
Confidence            45678888865  457889999999999998744


No 36 
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.78  E-value=2.9  Score=27.62  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             CccccccCCCCC---ceeEEcCCCCcccccccccCC
Q 040047           79 NFLCNACGEPGS---AFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        79 ~~~Cd~C~~~~~---g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ...|.+|+....   +....|..|+..+|..|+..|
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~   51 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQ   51 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSC
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCc
Confidence            567999997542   467789999999999997654


No 37 
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.24  E-value=1.9  Score=28.14  Aligned_cols=35  Identities=20%  Similarity=0.508  Sum_probs=26.7

Q ss_pred             ceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          139 SYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       139 ~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      ...| +|++..+.. ...-.|..|+.-+|..|+....
T Consensus        12 pv~C-iC~~~~~~~-~~mI~Cd~C~~W~H~~C~g~~~   46 (79)
T d1wepa_          12 PVYC-LCRQPYNVN-HFMIECGLCQDWFHGSCVGIEE   46 (79)
T ss_dssp             CCCS-TTSCSCCSS-SCEEEBTTTCCEEEHHHHTCCH
T ss_pred             CeEe-ECCCccCCC-CcEEECCCCCCcEeccccCcch
Confidence            3566 999875544 4567999999999999986553


No 38 
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=58.62  E-value=1.7  Score=29.27  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             CcccccccccCC----CCc-eEeeCCCCCcchhhhcccccc
Q 040047           21 NEYSCSACELII----SGS-AYGCWECKFFLHEQCGNASRA   56 (240)
Q Consensus        21 ~~~~C~~C~~~~----~g~-~Y~C~~C~f~lH~~Ca~~p~~   56 (240)
                      ..-.|..|+..+    .|. +-.|.+|+|-+++.|.+.-++
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk   55 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR   55 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHh
Confidence            467899998876    233 688999999999999987543


No 39 
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.93  E-value=3.1  Score=25.58  Aligned_cols=32  Identities=25%  Similarity=0.695  Sum_probs=25.4

Q ss_pred             CCccccccCCCCCceeEEcCCCCcccccccccCC
Q 040047           78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ..-.|.+|++.  +....|..|+..+|..|+..+
T Consensus         8 ~~~~C~~C~~~--g~lv~Cd~C~~~~H~~C~~~~   39 (61)
T d1mm2a_           8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPP   39 (61)
T ss_dssp             SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSC
T ss_pred             CcCCCcCCCCC--CeEEEeCCCCccCchhhcCCC
Confidence            34579999864  557889999999999998643


No 40 
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.61  E-value=3.2  Score=24.89  Aligned_cols=32  Identities=16%  Similarity=0.563  Sum_probs=26.5

Q ss_pred             ecccccccccCCcceeEEeCCCCeeeecccccC
Q 040047          141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRN  173 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~  173 (240)
                      .|.+|+.....- .+.+.|..||-.++..|...
T Consensus         2 ~C~~C~~~F~~~-~rkhhCr~CG~~fC~~Cs~~   33 (51)
T d1y02a2           2 SCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQ   33 (51)
T ss_dssp             CCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC
T ss_pred             CccccCCcccCC-ccCcccccCCcccCccccCC
Confidence            488899887644 67899999999999999754


No 41 
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.55  E-value=4.1  Score=24.39  Aligned_cols=29  Identities=24%  Similarity=0.628  Sum_probs=23.5

Q ss_pred             cccccccCCCC--ceEeeCCCCCcchhhhcc
Q 040047           24 SCSACELIISG--SAYGCWECKFFLHEQCGN   52 (240)
Q Consensus        24 ~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~   52 (240)
                      .|.+|+.++.-  ..++|..|+..++..|..
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~   32 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSS   32 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEE
T ss_pred             CccccCCcccCCccCcccccCCcccCccccC
Confidence            48889877543  269999999999999975


No 42 
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=49.99  E-value=6.3  Score=27.70  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=27.8

Q ss_pred             cceecccccccccC-CcceeEEeCCCCeeeecccccC
Q 040047          138 SSYVCDICHKQLDQ-KCFWSYNCFACNFHAHVSCTRN  173 (240)
Q Consensus       138 ~~~~C~vC~~~~~~-~~~~~Y~C~~C~~~lH~~C~~~  173 (240)
                      +...|..|++.... . ...+.|..|+..+|..|...
T Consensus        47 ~~~~C~~C~~~f~~~~-~~~~~C~~C~~~~C~~C~~~   82 (124)
T d1zbdb_          47 GVNRCILCGEQLGMLG-SASVVCEDCKKNVCTKCGVE   82 (124)
T ss_dssp             SSSBCSSSCCBCSTTS-CCEEECTTTCCEEETTSEEE
T ss_pred             CCCcCcccCCcccCCC-CCCCcCccCCcccccCCCCC
Confidence            45679999998652 2 46789999999999999643


No 43 
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.84  E-value=6.6  Score=26.11  Aligned_cols=39  Identities=15%  Similarity=0.194  Sum_probs=31.6

Q ss_pred             ccceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          137 SSSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       137 ~~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      +....|..|++....- ...+.|..||..++..|......
T Consensus         7 ~~~s~C~~C~~~Fs~~-~rrhhCr~CG~vfC~~Cs~~~~~   45 (88)
T d1wfka_           7 GMESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSAL   45 (88)
T ss_dssp             CCCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEE
T ss_pred             cccCcCcccCchhccc-cccccccccChhhChHHhCCccc
Confidence            3567899999987543 56899999999999999876554


No 44 
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.70  E-value=4.3  Score=26.29  Aligned_cols=32  Identities=28%  Similarity=0.617  Sum_probs=25.7

Q ss_pred             CccccccCCCC--CceeEEcCCCCcccccccccCC
Q 040047           79 NFLCNACGEPG--SAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        79 ~~~Cd~C~~~~--~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ...| +|++..  .++...|..|+.-+|..|+.++
T Consensus        12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~   45 (79)
T d1wepa_          12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIE   45 (79)
T ss_dssp             CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCC
T ss_pred             CeEe-ECCCccCCCCcEEECCCCCCcEeccccCcc
Confidence            4566 899864  3567899999999999998764


No 45 
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.56  E-value=5.2  Score=21.40  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=16.6

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhh
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQ   49 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~   49 (240)
                      ....|.||+.+|.. +|-=..=|-.-|..
T Consensus         2 ~~~~CaGC~~~I~D-RflL~a~Dr~WH~~   29 (30)
T d1j2oa1           2 SLLTCGGCQQNIGD-RYFLKAIDQYWHED   29 (30)
T ss_dssp             CCBCBSSSCSCBCS-SEEEECSSSEECTT
T ss_pred             CCcccCCCCCcchH-HHHHHHHHHHHhcC
Confidence            45689999999976 34333333333333


No 46 
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=48.93  E-value=5.5  Score=25.45  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             eecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ..|.+|++..+.- ...+.|..||..++.+|......
T Consensus        14 ~~C~~C~~~F~~~-~rrhhCr~CG~~~C~~C~~~~~~   49 (72)
T d1dvpa2          14 RVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQCP   49 (72)
T ss_dssp             SBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEEEE
T ss_pred             CccccCCCcccCc-cccccccccCCeeChhhhCCceE
Confidence            4699999987643 56899999999999999866544


No 47 
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.79  E-value=8.8  Score=20.60  Aligned_cols=29  Identities=14%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             eecccccccccCCcceeEEeCCCCeeeecccc
Q 040047          140 YVCDICHKQLDQKCFWSYNCFACNFHAHVSCT  171 (240)
Q Consensus       140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~  171 (240)
                      ..|..|++.+..+ .|+.+-.  +..+|+.|.
T Consensus         3 g~Ca~C~~~I~~~-e~VmRA~--~~VyHl~CF   31 (31)
T d1rutx3           3 GACSACGQSIPAS-ELVMRAQ--GNVYHLKCF   31 (31)
T ss_dssp             EECTTTCCEECTT-SEEEEET--TEEECGGGC
T ss_pred             cccccccCcCChh-Hhheecc--cceeeeccC
Confidence            4799999999877 8888866  467788773


No 48 
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.60  E-value=6.3  Score=24.45  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      ....|..|++....- ...+.|..||..++..|......
T Consensus         7 ~~~~C~~C~~~F~~~-~rrHHCR~CG~v~C~~Cs~~~~~   44 (64)
T d1joca1           7 EVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNAL   44 (64)
T ss_dssp             GCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEC
T ss_pred             cCCcCcCcCCcccCC-ccccchhhhCCeecccccCCcee
Confidence            446799999987643 56899999999999999876544


No 49 
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.14  E-value=3.8  Score=25.25  Aligned_cols=7  Identities=29%  Similarity=1.156  Sum_probs=3.1

Q ss_pred             EEcCCCC
Q 040047           94 FCCPLCD  100 (240)
Q Consensus        94 Y~C~~C~  100 (240)
                      |+|..|+
T Consensus        18 yHC~~Cg   24 (56)
T d2dkta2          18 YHCESCG   24 (56)
T ss_dssp             EEETTTT
T ss_pred             ccCCCCC
Confidence            4444443


No 50 
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=47.94  E-value=6.2  Score=27.74  Aligned_cols=60  Identities=23%  Similarity=0.547  Sum_probs=41.7

Q ss_pred             CCCccccccCCCCC---ceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccccc---
Q 040047           77 AGNFLCNACGEPGS---AFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQLD---  150 (240)
Q Consensus        77 ~~~~~Cd~C~~~~~---g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~~~---  150 (240)
                      .+...|..|+..+.   ...++|..|+..+|..|...+.              ...      ....+.|++|.+...   
T Consensus        46 ~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~--------------~~~------~~~~w~C~~C~k~re~~~  105 (124)
T d1zbdb_          46 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS--------------NNR------PHPVWLCKICLEQREVWK  105 (124)
T ss_dssp             CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC--------------CSS------SSCCEEEHHHHHHHHHHH
T ss_pred             cCCCcCcccCCcccCCCCCCCcCccCCcccccCCCCCcc--------------CCC------CCCCEECccCcchHHHHH
Confidence            34678999998753   4568899999999999964210              000      024699999999642   


Q ss_pred             -CCcceeE
Q 040047          151 -QKCFWSY  157 (240)
Q Consensus       151 -~~~~~~Y  157 (240)
                       ++ .|+|
T Consensus       106 ~sg-~Wf~  112 (124)
T d1zbdb_         106 RSG-AWFF  112 (124)
T ss_dssp             HTS-HHHH
T ss_pred             Hcc-Chhh
Confidence             33 6877


No 51 
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=46.27  E-value=6.6  Score=24.68  Aligned_cols=31  Identities=23%  Similarity=0.528  Sum_probs=24.3

Q ss_pred             ccccccCCCCC--ceeEEcCCCCcccccccccCC
Q 040047           80 FLCNACGEPGS--AFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        80 ~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      ..| +|+....  .....|..|+.-+|..|..++
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~   49 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGIN   49 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCC
T ss_pred             EEe-eCCCCcCCCCeEEEeCCCCCcCchhhcCCc
Confidence            457 6887542  457899999999999998765


No 52 
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.88  E-value=5.7  Score=24.90  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             cccccccCCC--CceEeeCCCCCcchhhhccc
Q 040047           24 SCSACELIIS--GSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        24 ~C~~C~~~~~--g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      .|..|..++.  ...++|..|+..++..|...
T Consensus         7 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~   38 (67)
T d1vfya_           7 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   38 (67)
T ss_dssp             BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             ccccCCCcccCcccccccccCCCEecccccCC
Confidence            6999988653  23699999999999999864


No 53 
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.88  E-value=6.5  Score=24.61  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             ecccccccccCCcceeEEeCCCCeeeecccccCccc
Q 040047          141 VCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRNN  176 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~~  176 (240)
                      .|.+|++..+.- ...+.|..||..++..|......
T Consensus         7 ~C~~C~~~F~~~-~rkhhCr~CG~~fC~~Cs~~~~~   41 (67)
T d1vfya_           7 ACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNSIP   41 (67)
T ss_dssp             BCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEEEE
T ss_pred             ccccCCCcccCc-ccccccccCCCEecccccCCcEE
Confidence            699999987644 56899999999999999876554


No 54 
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.26  E-value=5.4  Score=25.46  Aligned_cols=31  Identities=19%  Similarity=0.463  Sum_probs=25.3

Q ss_pred             ccccccccCCCC--ceEeeCCCCCcchhhhccc
Q 040047           23 YSCSACELIISG--SAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        23 ~~C~~C~~~~~g--~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ..|.+|..++.-  ..++|..|+..++..|...
T Consensus        14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~   46 (72)
T d1dvpa2          14 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK   46 (72)
T ss_dssp             SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred             CccccCCCcccCccccccccccCCeeChhhhCC
Confidence            469999887532  3699999999999999763


No 55 
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.71  E-value=8.3  Score=24.67  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=25.8

Q ss_pred             CCccccccCCCCC-ceeEEcC--CCCcccccccccCC
Q 040047           78 GNFLCNACGEPGS-AFSFCCP--LCDFDLHVQCAFLP  111 (240)
Q Consensus        78 ~~~~Cd~C~~~~~-g~~Y~C~--~C~f~lH~~Ca~lP  111 (240)
                      ....| +|+.... +....|.  .|+.-+|..|+.++
T Consensus        15 ~~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~   50 (78)
T d1wewa_          15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILP   50 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCC
T ss_pred             CccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCcc
Confidence            35678 8998764 5566676  79999999999775


No 56 
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.86  E-value=11  Score=24.99  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=27.7

Q ss_pred             CCCccccccCCCCC--ceeEEcCCCCccccccccc
Q 040047           77 AGNFLCNACGEPGS--AFSFCCPLCDFDLHVQCAF  109 (240)
Q Consensus        77 ~~~~~Cd~C~~~~~--g~~Y~C~~C~f~lH~~Ca~  109 (240)
                      +....|..|+..+.  ...++|..|+..++..|..
T Consensus         7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~   41 (88)
T d1wfka_           7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS   41 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred             cccCcCcccCchhccccccccccccChhhChHHhC
Confidence            34678999999874  4479999999999999985


No 57 
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=42.69  E-value=4.2  Score=26.18  Aligned_cols=21  Identities=33%  Similarity=0.672  Sum_probs=10.0

Q ss_pred             ecccccccccCCcceeEEeCCC
Q 040047          141 VCDICHKQLDQKCFWSYNCFAC  162 (240)
Q Consensus       141 ~C~vC~~~~~~~~~~~Y~C~~C  162 (240)
                      .|-.|...++.. +..|.|..|
T Consensus         4 ~CP~C~~eL~~~-~~~~~C~~C   24 (71)
T d2jnea1           4 HCPQCQHVLDQD-NGHARCRSC   24 (71)
T ss_dssp             BCSSSCSBEEEE-TTEEEETTT
T ss_pred             cCCCccCccccc-CCCEehhhh
Confidence            444555544432 335555555


No 58 
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.23  E-value=8  Score=20.52  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             CCCccccccCCCCCceeEEcCCCCcccccccc
Q 040047           77 AGNFLCNACGEPGSAFSFCCPLCDFDLHVQCA  108 (240)
Q Consensus        77 ~~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca  108 (240)
                      .+..-|+.|.+.+.|.+..  .=+-..|+.||
T Consensus         3 sgssgC~~C~~~ItGkVLE--AG~khYHP~CA   32 (32)
T d1wiga1           3 SGSSGCDSCEKYITGRVLE--AGEKHYHPSCA   32 (32)
T ss_dssp             CSCCSCSSSCCCCSSCCBC--CSSCCBCTTTS
T ss_pred             Cccchhhhhhhhhhhhhhh--ccccccCCCCC
Confidence            3567799999988775542  11344566664


No 59 
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.60  E-value=5.3  Score=26.57  Aligned_cols=33  Identities=27%  Similarity=0.675  Sum_probs=27.4

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhhhccc
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ....|..|+-.-...-|-|..|.-.+|..|...
T Consensus        14 ~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r   46 (89)
T d1wila_          14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR   46 (89)
T ss_dssp             CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred             cCccccccCcccccceecceeecchhhHHHHHH
Confidence            568899996655555799999999999999873


No 60 
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2,  ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.35  E-value=6  Score=23.28  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=19.9

Q ss_pred             eecccccccccCCcceeEEeCCCCeeeec-ccc
Q 040047          140 YVCDICHKQLDQKCFWSYNCFACNFHAHV-SCT  171 (240)
Q Consensus       140 ~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~-~C~  171 (240)
                      ..|.+|.+.     ...|+|..|+...+. .|.
T Consensus         8 ~lC~vC~~~-----~~KY~CP~C~~~yCSL~Cy   35 (46)
T d1x4sa1           8 GFCPAGEVQ-----PARYTCPRCNAPYCSLRCY   35 (46)
T ss_dssp             CSSCTTCCE-----EECEECTTTCCEESSHHHH
T ss_pred             ccChhhhCc-----cccccCCCCCCceechHHH
Confidence            368888876     569999999877654 444


No 61 
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.87  E-value=4.8  Score=20.98  Aligned_cols=12  Identities=33%  Similarity=0.863  Sum_probs=9.5

Q ss_pred             eEeeCCCCCcch
Q 040047           36 AYGCWECKFFLH   47 (240)
Q Consensus        36 ~Y~C~~C~f~lH   47 (240)
                      .|.|..|+|.+-
T Consensus         1 py~C~~CnF~FK   12 (29)
T d1bboa2           1 PYHCTYCNFSFK   12 (29)
T ss_dssp             CEECSSSSCEES
T ss_pred             CcccceeeeeEe
Confidence            389999998763


No 62 
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.99  E-value=7.3  Score=21.88  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             ccCCCCCceeEEcCCCCcccccccccCC
Q 040047           84 ACGEPGSAFSFCCPLCDFDLHVQCAFLP  111 (240)
Q Consensus        84 ~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP  111 (240)
                      .|.+-...+.|.|.+|+--++..|+...
T Consensus         3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~   30 (40)
T d2dida1           3 LCPQHHEALSLFCYEDQEAVCLICAISH   30 (40)
T ss_dssp             BCTTTCCBCCEEESSSCSEECHHHHTSS
T ss_pred             cchhhCccceEEcccCCcEeeccCcCCC
Confidence            4666666778999999999999997654


No 63 
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.89  E-value=1.9  Score=23.68  Aligned_cols=13  Identities=23%  Similarity=0.631  Sum_probs=8.8

Q ss_pred             CcccccccccCCC
Q 040047           21 NEYSCSACELIIS   33 (240)
Q Consensus        21 ~~~~C~~C~~~~~   33 (240)
                      .-|.|++|++.+.
T Consensus         9 VfFtCn~CGEs~K   21 (35)
T d1wjva1           9 VFFTCNACGESVK   21 (35)
T ss_dssp             CEEEESSSCCEEE
T ss_pred             EEEEcchhHHHHh
Confidence            3467888877663


No 64 
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=36.90  E-value=9  Score=21.33  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             ccCCCCCceeEEcCCCCcccccccccCCceeeeCCC
Q 040047           84 ACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSH  119 (240)
Q Consensus        84 ~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H  119 (240)
                      .|.+-.....|.|..|+--++..|+...   .|.+|
T Consensus         2 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~---~H~~H   34 (39)
T d1frea_           2 KCSEHDERLKLYCKDDGTLSCVICRDSL---KHASH   34 (39)
T ss_dssp             CCCSSCSSCCCCCCSSSSSSCCTTSSCS---SCTTC
T ss_pred             CCcccCcceeEEcccCCcEeeccCcCCC---CcCCC
Confidence            3555555667889999988999997643   35554


No 65 
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=36.86  E-value=9.7  Score=22.66  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             cceecccccccccCCcceeEEeCCCCeeeecccccCcc
Q 040047          138 SSYVCDICHKQLDQKCFWSYNCFACNFHAHVSCTRNRN  175 (240)
Q Consensus       138 ~~~~C~vC~~~~~~~~~~~Y~C~~C~~~lH~~C~~~~~  175 (240)
                      .+..|.+|-.....+ .-..+...|+-.+|..|+..=.
T Consensus         4 d~~~C~ICl~~~~~~-~~~~~l~~C~H~Fh~~Ci~~Wl   40 (55)
T d1iyma_           4 DGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWL   40 (55)
T ss_dssp             CSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTT
T ss_pred             CCCCCeEECccccCC-CEEEEeCCCCCcccHHHHHHHH
Confidence            345799999887654 4566778899999999986543


No 66 
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=36.73  E-value=10  Score=22.81  Aligned_cols=44  Identities=18%  Similarity=0.555  Sum_probs=27.3

Q ss_pred             eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047           36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG   89 (240)
Q Consensus        36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~   89 (240)
                      .|.|..|+|.+.+.=.+....|.    |.=+|.-  .|    ..+.|-.|+..-
T Consensus         3 ky~C~~CgyiYd~~~Gd~~~gi~----pGT~F~~--LP----~dw~CP~C~a~K   46 (53)
T d1iroa_           3 KYTCTVCGYIYNPEDGDPDNGVN----PGTDFKD--IP----DDWVCPLCGVGK   46 (53)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBC----TTCCGGG--SC----TTCBCTTTCCBG
T ss_pred             CeEcCCCCcEECcccCCcccCCC----CCCCHHH--CC----CCCCCcCCCCcH
Confidence            59999999998877665433332    2212211  12    478999998753


No 67 
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.81  E-value=7.9  Score=20.65  Aligned_cols=28  Identities=18%  Similarity=0.465  Sum_probs=16.7

Q ss_pred             cccccccccCCCCceEeeCCCCCcchhhh
Q 040047           22 EYSCSACELIISGSAYGCWECKFFLHEQC   50 (240)
Q Consensus        22 ~~~C~~C~~~~~g~~Y~C~~C~f~lH~~C   50 (240)
                      ...|.||+.+|.. +|-=..=|-.-|..|
T Consensus         2 ~~~CaGC~~~I~D-RflL~v~dr~WH~~C   29 (30)
T d1rutx1           2 WKRCAGCGGKIAD-RFLLYAMDSYWHSRC   29 (30)
T ss_dssp             CCBBTTTCCBCCC-SEEEEETTEEECGGG
T ss_pred             ccccCCCCCccch-hhhhccchhhhhhhh
Confidence            3579999999976 343333344444444


No 68 
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.85  E-value=5  Score=20.93  Aligned_cols=11  Identities=36%  Similarity=0.923  Sum_probs=9.1

Q ss_pred             CccccccCCCC
Q 040047           79 NFLCNACGEPG   89 (240)
Q Consensus        79 ~~~Cd~C~~~~   89 (240)
                      ++.|++||+.+
T Consensus         3 Pf~C~~CgrkF   13 (28)
T d1a1ia3           3 PFACDICGRKF   13 (28)
T ss_dssp             CEECTTTCCEE
T ss_pred             Ccccchhhhhh
Confidence            68899999865


No 69 
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.68  E-value=11  Score=23.94  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=20.9

Q ss_pred             ceecccccccccCCcceeEE--eCCCCe-eeecccccCcc
Q 040047          139 SYVCDICHKQLDQKCFWSYN--CFACNF-HAHVSCTRNRN  175 (240)
Q Consensus       139 ~~~C~vC~~~~~~~~~~~Y~--C~~C~~-~lH~~C~~~~~  175 (240)
                      ..+| +|++.-+.  . ...  |..|.. -+|..|+....
T Consensus        16 ~~~C-iC~~~~~~--~-~i~c~~~~C~~~wfH~~Cvgl~~   51 (71)
T d1wesa_          16 PTYC-LCNQVSYG--E-MIGCDNEQCPIEWFHFSCVSLTY   51 (71)
T ss_dssp             CCCS-TTCCCCCS--S-EECCSCTTCSCCCEETTTTTCSS
T ss_pred             CCEE-EeCCCCCC--C-EEEEECCCCCCcCccCccCCCCc
Confidence            4567 99986442  2 333  456754 59999986543


No 70 
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.98  E-value=8.1  Score=25.02  Aligned_cols=28  Identities=14%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhh
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQ   49 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~   49 (240)
                      ..-+|..|.+.+.-..|.|. |+..++..
T Consensus        24 k~~RC~~C~KKl~l~~~~Cr-Cg~~FC~~   51 (74)
T d1wfla_          24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL   51 (74)
T ss_dssp             CTTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred             CCCcChhhCCcccceeeEcc-CCCEehhh
Confidence            45689999888754569995 98776543


No 71 
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=30.99  E-value=16  Score=21.97  Aligned_cols=44  Identities=20%  Similarity=0.645  Sum_probs=26.2

Q ss_pred             eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047           36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG   89 (240)
Q Consensus        36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~   89 (240)
                      .|.|..|+|.+...=.+....|.    |.=+|.-  .|    ..+.|-.|+..-
T Consensus         2 ky~C~~CgyiYd~~~Gd~~~gi~----pGT~f~d--LP----~dw~CP~C~a~K   45 (53)
T d1brfa_           2 KWVCKICGYIYDEDAGDPDNGIS----PGTKFEE--LP----DDWVCPICGAPK   45 (53)
T ss_dssp             EEEETTTCCEEETTTCBGGGTBC----TTCCGGG--SC----TTCBCTTTCCBG
T ss_pred             ceECCCCCcEECcccCCcccCCC----CCCCHHH--CC----CCCCCcCCCCcH
Confidence            69999999988765444332222    2212211  12    479999998753


No 72 
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.40  E-value=12  Score=23.48  Aligned_cols=29  Identities=14%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhhh
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQC   50 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~C   50 (240)
                      .+-+|..|.+.+.-..|.|. |+..++...
T Consensus        14 k~~RC~~C~KKl~l~~~~Cr-Cg~~FC~~H   42 (64)
T d1wfha_          14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSH   42 (64)
T ss_dssp             SCCCCTTTCCCCCTTCEECS-SSCEECTTT
T ss_pred             CCCcChhhCCCccceeeecc-CCCEehhhc
Confidence            56799999988754569996 987765443


No 73 
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=28.10  E-value=21  Score=20.71  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=23.1

Q ss_pred             ccccccCCCCCceeEEcCC--C-CcccccccccCC
Q 040047           80 FLCNACGEPGSAFSFCCPL--C-DFDLHVQCAFLP  111 (240)
Q Consensus        80 ~~Cd~C~~~~~g~~Y~C~~--C-~f~lH~~Ca~lP  111 (240)
                      ..| .|++...+....|..  | .--+|..|+.++
T Consensus         3 ~yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cvgl~   36 (51)
T d2pnxa1           3 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLT   36 (51)
T ss_dssp             EET-TTTEECCSEEEECSCTTCSSCEEEGGGGTCS
T ss_pred             cEE-EcCCCCCCCEEEEecCCCCCCCEeCCccCCC
Confidence            468 698877777788875  4 456899998764


No 74 
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.54  E-value=17  Score=20.96  Aligned_cols=25  Identities=28%  Similarity=0.716  Sum_probs=15.1

Q ss_pred             ceeccccccccc------------CCcceeEEeCCCCee
Q 040047          139 SYVCDICHKQLD------------QKCFWSYNCFACNFH  165 (240)
Q Consensus       139 ~~~C~vC~~~~~------------~~~~~~Y~C~~C~~~  165 (240)
                      .+.|+ |++...            .+ .-.|.|..||..
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~~Ht~-ekpy~C~~C~k~   39 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKK   39 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHHHHSC-CCSEECTTTSCE
T ss_pred             CCCCC-CCCeECCHHHhHHHhhcccc-ccCCcCCCcCCE
Confidence            46776 877422            22 346888888654


No 75 
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=27.21  E-value=21  Score=22.60  Aligned_cols=45  Identities=22%  Similarity=0.586  Sum_probs=26.4

Q ss_pred             CceEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCC
Q 040047           34 GSAYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEP   88 (240)
Q Consensus        34 g~~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~   88 (240)
                      ...|.|..|++.+.+.=.+.-..|.    |.=+|.-  .    ...+.|-.|+..
T Consensus         5 ~~ky~C~~CgyiYDp~~GD~~~gI~----pGT~F~d--L----P~dW~CP~Cga~   49 (70)
T d1dx8a_           5 EGKYECEACGYIYEPEKGDKFAGIP----PGTPFVD--L----SDSFMCPACRSP   49 (70)
T ss_dssp             SSCEEETTTCCEECTTTCCTTTTCC----SSCCGGG--S----CTTCBCTTTCCB
T ss_pred             CCeEEcCCCCeEECcccCCcccCCC----CCCChHH--C----CCCCCCcCCCCc
Confidence            3479999999988766444322221    2212211  1    247889999865


No 76 
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.31  E-value=8.9  Score=25.41  Aligned_cols=63  Identities=14%  Similarity=0.326  Sum_probs=40.0

Q ss_pred             CCccccccCCCCCceeEEcCCCCcccccccccCCceeeeCCCceeeEEeecCCccCCCCccceeccccccc
Q 040047           78 GNFLCNACGEPGSAFSFCCPLCDFDLHVQCAFLPEILIHDSHFHSLNLSYALPAAHHYESSSYVCDICHKQ  148 (240)
Q Consensus        78 ~~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~Ca~lP~~i~~~~H~H~L~l~~~~~~~~~~~~~~~~C~vC~~~  148 (240)
                      .+..|.+|+.......|.|..|.-..|..|..--..+.   ..+.+.......     ...+|.|--|+..
T Consensus        14 ~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~---~e~a~e~~e~A~-----T~~GWSC~~C~nl   76 (89)
T d1wila_          14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQ---GDSAAEVTEMAH-----TETGWSCHYCDNI   76 (89)
T ss_dssp             CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCC---CCCCCSCSCCCS-----SSSSCCCTTTCCC
T ss_pred             cCccccccCcccccceecceeecchhhHHHHHHhcccc---cHHHHHHHHhhc-----CCCCcchhhhcch
Confidence            46799999766556778999999999999985322111   122222222110     1367888888774


No 77 
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.44  E-value=21  Score=20.24  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=17.8

Q ss_pred             CccccccCCCCCceeEEcCCCCccccccc
Q 040047           79 NFLCNACGEPGSAFSFCCPLCDFDLHVQC  107 (240)
Q Consensus        79 ~~~Cd~C~~~~~g~~Y~C~~C~f~lH~~C  107 (240)
                      ..+|+.|++.+.|.+...-.  ...|+.|
T Consensus        15 G~~C~~C~~~ItG~V~~Ag~--~~yHP~C   41 (41)
T d1v6ga1          15 GTRCFSCDQFIEGEVVSALG--KTYHPDC   41 (41)
T ss_dssp             CCBCTTTCCBCCSCCEEETT--EEECTTT
T ss_pred             CcccccccCEeeeeeeEecC--cccCCCC
Confidence            57899999998876654332  3455554


No 78 
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.81  E-value=16  Score=18.28  Aligned_cols=11  Identities=27%  Similarity=0.779  Sum_probs=8.1

Q ss_pred             ccccccCCCCc
Q 040047           25 CSACELIISGS   35 (240)
Q Consensus        25 C~~C~~~~~g~   35 (240)
                      |.+|++.+.|.
T Consensus         1 cggcgedvvgd   11 (27)
T d1x61a1           1 CGGCGEDVVGD   11 (27)
T ss_dssp             CSSSCSCCCSS
T ss_pred             CCCcccccccC
Confidence            77888887654


No 79 
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.70  E-value=23  Score=23.36  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=21.6

Q ss_pred             CcccccccccCCCC-ceEeeCCCCCcchhhhc
Q 040047           21 NEYSCSACELIISG-SAYGCWECKFFLHEQCG   51 (240)
Q Consensus        21 ~~~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca   51 (240)
                      ..-.|..|...+.- ..|.|. |+..|+...-
T Consensus        24 ~~~RC~~C~KKl~l~~~~~Cr-Cg~~FC~~HR   54 (85)
T d1wffa_          24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHR   54 (85)
T ss_dssp             CCCBCSSSCCBCSSSSCEECT-TCCEECTTTC
T ss_pred             cCCcChhcCCeecCCcCeecC-CCCEehhhcC
Confidence            34589999888743 369996 9877665543


No 80 
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=23.64  E-value=24  Score=21.01  Aligned_cols=44  Identities=18%  Similarity=0.503  Sum_probs=26.3

Q ss_pred             eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047           36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG   89 (240)
Q Consensus        36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~   89 (240)
                      .|.|..|+|.+...=.+....|.    |.=+|.-  .    ...+.|-.|+..-
T Consensus         3 ~y~C~~CgyiYdp~~Gd~~~gi~----pGT~F~~--L----P~~w~CP~C~a~K   46 (52)
T d2dsxa1           3 IYVCTVCGYEYDPAKGDPDSGIK----PGTKFED--L----PDDWACPVCGASK   46 (52)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBC----TTCCGGG--S----CTTCBCTTTCCBG
T ss_pred             eEEeCCCCeEECcccCCcccCCC----CCCCHHH--C----CCCCCCcCCCCcH
Confidence            59999999988766554333222    2212211  1    2479999998753


No 81 
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=23.54  E-value=19  Score=21.79  Aligned_cols=44  Identities=18%  Similarity=0.519  Sum_probs=25.7

Q ss_pred             eEeeCCCCCcchhhhccccccccCCCCCCcceEEeeccCCCCCCccccccCCCC
Q 040047           36 AYGCWECKFFLHEQCGNASRAMQHTSHPMHHLTLVPTTTYSAGNFLCNACGEPG   89 (240)
Q Consensus        36 ~Y~C~~C~f~lH~~Ca~~p~~i~h~~Hp~H~L~l~~~~~~~~~~~~Cd~C~~~~   89 (240)
                      .|.|..|+|.+.+.=.+....|.    |.=+|.-  .|    ..+.|-.|+..-
T Consensus         4 ky~C~~CgyiYdp~~Gd~~~gi~----pGT~F~~--LP----~dw~CP~C~a~K   47 (56)
T d1s24a_           4 KWICITCGHIYDEALGDEAEGFT----PGTRFED--IP----DDWCCPDCGATK   47 (56)
T ss_dssp             EEEETTTTEEEETTSCCTTTTCC----SCCCGGG--CC----TTCCCSSSCCCG
T ss_pred             cEECCCCCcEECcccCCcccCcC----CCCChhh--CC----CCCCCcCCCCcH
Confidence            69999999887765444322222    2212211  12    478999998753


No 82 
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.53  E-value=16  Score=19.48  Aligned_cols=17  Identities=18%  Similarity=0.683  Sum_probs=12.6

Q ss_pred             cccccccCCCCceEeeC
Q 040047           24 SCSACELIISGSAYGCW   40 (240)
Q Consensus        24 ~C~~C~~~~~g~~Y~C~   40 (240)
                      .|.+|+.+++|.+|.-.
T Consensus         1 vCt~Ck~~LaGqrFTSr   17 (32)
T d2cuqa1           1 VCTGCQTPLAGQQFTSR   17 (32)
T ss_dssp             BCSSSCCBCTTCCEEEC
T ss_pred             CccccCccccCCccccC
Confidence            37889998888776543


No 83 
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.44  E-value=7.6  Score=22.78  Aligned_cols=25  Identities=16%  Similarity=0.571  Sum_probs=16.4

Q ss_pred             CccccccCCCC---CceeEEcCCCCccc
Q 040047           79 NFLCNACGEPG---SAFSFCCPLCDFDL  103 (240)
Q Consensus        79 ~~~Cd~C~~~~---~g~~Y~C~~C~f~l  103 (240)
                      .+.|..|+..+   .+...+|.+|++.+
T Consensus         4 ~YiCgeCg~~~~l~~~d~irCreCG~RI   31 (46)
T d1twfl_           4 KYICAECSSKLSLSRTDAVRCKDCGHRI   31 (46)
T ss_dssp             CEECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred             EEEcccCCCceEeCCCCcEEeccCCcEE
Confidence            46777777754   25667777777543


No 84 
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.30  E-value=19  Score=23.09  Aligned_cols=29  Identities=14%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CcccccccccCCCCceEeeCCCCCcchhhh
Q 040047           21 NEYSCSACELIISGSAYGCWECKFFLHEQC   50 (240)
Q Consensus        21 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~C   50 (240)
                      .+-+|..|.+.+.-..|.|. |+..++...
T Consensus        24 kk~RC~~C~KKl~l~~~~Cr-Cg~~FC~~H   52 (74)
T d1wfpa_          24 TATRCLSCNKKVGVTGFKCR-CGSTFCGTH   52 (74)
T ss_dssp             CCCBCSSSCCBCTTTCEECT-TSCEECTTT
T ss_pred             CCCcChhcCCccCCCceecC-CCChhhhcc
Confidence            46789999988755568885 987665443


No 85 
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=23.28  E-value=9  Score=22.99  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=24.8

Q ss_pred             CCcccccccccCCCCc---eEeeCCCCCcchhhhccc
Q 040047           20 GNEYSCSACELIISGS---AYGCWECKFFLHEQCGNA   53 (240)
Q Consensus        20 ~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~   53 (240)
                      ++...|..|.+...+.   .-.|..|.-.+|..|...
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~   40 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLST   40 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHH
Confidence            3667899997765432   346777888999999883


No 86 
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40  E-value=13  Score=21.72  Aligned_cols=26  Identities=19%  Similarity=0.581  Sum_probs=19.2

Q ss_pred             cCCC-CCceeEEcCCCCcccccccccC
Q 040047           85 CGEP-GSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        85 C~~~-~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |... .....|.|..|+.-++..|+..
T Consensus         4 C~~H~~e~l~~yC~~c~~~iC~~C~~~   30 (51)
T d2d8ua1           4 CKEHEDEKINIYCLTCEVPTCSMCKVF   30 (51)
T ss_dssp             CSSCTTCCCCSEESSSCCCCCSHHHHS
T ss_pred             CcccCcCcceEEcCCCCceECccccCc
Confidence            4443 2356788999999999999764


No 87 
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.98  E-value=21  Score=20.44  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             cCCC-CCceeEEcCCCCcccccccccC
Q 040047           85 CGEP-GSAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        85 C~~~-~~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      |..- .....|.|..|+.-++..|+..
T Consensus         8 C~~H~~e~l~~yC~~C~~~iC~~C~~~   34 (47)
T d2dq5a1           8 CLEHEDEKVNMYCVTDDQLICALCKLV   34 (47)
T ss_dssp             CSSCTTSBEEEEETTTTEEEEHHHHHT
T ss_pred             chhhCCCcceEEcCCCCccCCccCcCc
Confidence            5554 3467899999999999999754


No 88 
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.64  E-value=16  Score=22.59  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=17.4

Q ss_pred             CceeEEcCCCCcccccccccC
Q 040047           90 SAFSFCCPLCDFDLHVQCAFL  110 (240)
Q Consensus        90 ~g~~Y~C~~C~f~lH~~Ca~l  110 (240)
                      ....|.|..|+.-++..|+..
T Consensus        20 e~l~~fC~~C~~~iC~~C~~~   40 (71)
T d2djaa1          20 EKVNMYCVSDDQLICALCKLV   40 (71)
T ss_dssp             SCCCEEETTTTEEECHHHHHT
T ss_pred             ccceeEcCCCCceeccccccC
Confidence            345688999999999999864


No 89 
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=21.17  E-value=40  Score=18.67  Aligned_cols=26  Identities=23%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             CCCCCccccccCCCCC------ceeEEcCCCC
Q 040047           75 YSAGNFLCNACGEPGS------AFSFCCPLCD  100 (240)
Q Consensus        75 ~~~~~~~Cd~C~~~~~------g~~Y~C~~C~  100 (240)
                      |....-.|..|+..+.      ...|.|+.|.
T Consensus         8 YgR~g~pC~~C~~~I~~~~~~gR~t~~Cp~CQ   39 (40)
T d1k3xa3           8 FHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQ   39 (40)
T ss_dssp             TTCTTSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred             eCCCCCccCcCCCEEEEEEECCCCCEEChhhC
Confidence            3445678999999862      3568999884


No 90 
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.13  E-value=15  Score=20.00  Aligned_cols=14  Identities=14%  Similarity=0.437  Sum_probs=11.7

Q ss_pred             cccccccccCCCCc
Q 040047           22 EYSCSACELIISGS   35 (240)
Q Consensus        22 ~~~C~~C~~~~~g~   35 (240)
                      .-+|.+|+++|.|.
T Consensus         8 apkC~~C~~~I~g~   21 (35)
T d1x3ha1           8 SPKCGGCNRPVLEN   21 (35)
T ss_dssp             SCBCTTTCCBCCSS
T ss_pred             ChhhhhcCCcccch
Confidence            46899999999875


No 91 
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=21.01  E-value=29  Score=19.70  Aligned_cols=25  Identities=16%  Similarity=0.525  Sum_probs=18.5

Q ss_pred             ccceeccccccccc----CCcceeEEeCCC
Q 040047          137 SSSYVCDICHKQLD----QKCFWSYNCFAC  162 (240)
Q Consensus       137 ~~~~~C~vC~~~~~----~~~~~~Y~C~~C  162 (240)
                      ..+..|..|+..+.    .+ -+.|.|..|
T Consensus        14 R~g~~C~~C~~~I~~~~~~~-R~t~~Cp~C   42 (44)
T d1k82a3          14 RKGEPCRVCGTPIVATKHAQ-RATFYCRQC   42 (44)
T ss_dssp             CTTSBCTTTCCBCEEEEETT-EEEEECTTT
T ss_pred             CCCCCcCCCCCEEEEEEECC-cccEEChhh
Confidence            45678999999754    22 478999887


No 92 
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.92  E-value=28  Score=20.74  Aligned_cols=24  Identities=21%  Similarity=0.410  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHH-----HHHHHHHhh
Q 040047          214 LEAQLELQRLQLEMQ-----MAQELAKMM  237 (240)
Q Consensus       214 ~~~~~~~~~~~~~~~-----~~~~~~~~~  237 (240)
                      -.++++++.|+.|+.     +++.+|.+|
T Consensus         3 ~q~rk~VeqLr~e~~~~RikvS~aa~~l~   31 (54)
T d1gg2g_           3 AQARKLVEQLKMEANIDRIKVSKAAADLM   31 (54)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence            357788888888854     456666655


Done!