BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040048
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ GN FK+ + Y + + DP N++L NRAAC +KL +F++A++DC+ + +
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
+ K +R+A C + +W + + YE + P +EE + ++
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH 330
GNE +K G++ A+ Y+ A+ DP A SN+ A L L A+ +C IR++
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79
Query: 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366
+ + + R A + + E KA + A +A QVD
Sbjct: 80 FIKGYIRKAACLVAMREWSKA----QRAYEDALQVD 111
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ GN K F YG + L+P N+V CNRAA SKLG + A++DC A+ +
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
P YSKA R + + K ++ Y+ + PD+E L+
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
+ E LK GNE K NF A+ Y AI ++P A Y N+ AA LG AV +C
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
AI I+P Y +A+ R+ L + +A+ ++K A
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP--HYHR 333
K GN+A A+ + AI IDP + AL +L + +EAV ++A+ ++P ++
Sbjct: 58 KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK 117
Query: 334 AHHRLANLYLR 344
++ ++A L LR
Sbjct: 118 SNLKIAELKLR 128
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
MDP E K +GN YK G++ +A+ Y A+ +DPN AS N A G +A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
+ ++A+ ++P+ +A +R N Y + G+ +KAI ++ A
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKA 103
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 491 VMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550
M A ++ GNA +KQ + + Y L LDP N+ N K G ++K
Sbjct: 2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
AIE AL + P +KA RR + + K ++ +++DY+ + P++ + Q L
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
+GN YK G++ +A+ Y A+ +DPN A + A G +A+ + ++A+ ++P
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 330 HYHRAHHRLAN 340
+ +A L N
Sbjct: 109 NNAKAKQNLGN 119
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 22/130 (16%)
Query: 417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ 476
A K +Q+A E + D + + ++ +GNA G ++ A+ Q
Sbjct: 18 AYYKQGDYQKAIEYYQKALELDPNNASAWYN-LGNAYY---------KQGDYQKAIEYYQ 67
Query: 477 KAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLC 536
KA + D NN A GNA +KQ + + Y L LDP N+
Sbjct: 68 KALELDPNN------------AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Query: 537 NRAACRSKLG 546
N + K G
Sbjct: 116 NLGNAKQKQG 125
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
R+A V ++ GN F F+E Y + LDP V N +AC G EK I
Sbjct: 21 RQAYAVQL-KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
E AL ++P +SKA LRRA + + +M D +L
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
LK GN + A NF EA+ Y AI +DPN+ + SN +A I+ G L + + +A+
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIY 353
I+P + +A R A+ LG A++
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAMF 114
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
R+A V ++ GN F F+E Y + LDP V N +AC G EK I
Sbjct: 17 RQAYAVQL-KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 75
Query: 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
E AL ++P +SKA LRRA + + +M D +L
Sbjct: 76 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
LK GN + A NF EA+ Y AI +DPN+ + SN +A I+ G L + + +A+
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIY 353
I+P + +A R A+ LG A++
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDAMF 110
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
MDP E +GN YK G++ EA+ Y A+ +DPN A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
+ ++A+ ++P+ A + L N Y + G+ ++AI +++ A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL 525
G +++A+ QKA + D NN E + GNA +KQ + E Y L
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKAL 70
Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569
LDP N+ N K G +++AIE AL + P ++A+
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 259 STRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
+ +DP E +GN YK G++ EA+ Y A+ +DPN A N A G
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 94
Query: 316 EAVFECREAIRIEPHYHRAHHRLAN 340
EA+ ++A+ ++P+ A L N
Sbjct: 95 EAIEYYQKALELDPNNAEAKQNLGN 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
GNA +KQ + E Y L LDP N+ N K G +++AIE AL + P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
++A + + K ++ +++ Y+ + P++ E Q L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLAC-----GRFEDALAAIQKAAKQDSNNKEVNMVM 492
D DE ++ + A NL G +++A+ QKA + D NN E +
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLG 546
GNA +KQ + E Y L LDP N+ N + K G
Sbjct: 84 ------------GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
+S GNA + ++S+ Y L + P N + L NRAA S GQ EKA ED A V
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 562 RPGYSKARLR 571
P YSKA R
Sbjct: 75 DPKYSKAWSR 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 256 RALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
R+++ + + LK GN +++A+ LY A+SI P Y SN+ AA A G+
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 316 EAVFECREAIRIEPHYHRAHHRL 338
+A + A ++P Y +A RL
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRL 85
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%)
Query: 498 VAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557
V + GN + Y + + LDP+N VL NR+A +K G ++KA ED
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
++++P + K R+A + ++E + + YE K ++ ++ + LQ
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
LK GN+ GN +AL Y AI +DP+ SN++AA G +A + + +
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 327 IEPHYHRAHHRLA 339
++P + + + R A
Sbjct: 67 LKPDWGKGYSRKA 79
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKA 551
K K A + GN F+ K+ + Y L L DP V N +AC +G +K
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP---VFYSNLSACYVSVGDLKKV 58
Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592
+E AL ++P YSK LRRA + K+ +M D +L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326
LK GN+ ++ + +A+ Y+ A+ + + Y SN +A +++G L + V +A+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTKALE 67
Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK 379
++P Y + R A+ LG+ A++ D D + L+ +LNK
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 153/353 (43%), Gaps = 29/353 (8%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
+G + AG A+AL+ + AA+ DP+ + +A+G+ A+ + + I+++
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEAD-----QVDIAKAKSLQAHLNKCT 381
+ A + +L L+ G++++A FK + P + Q + K+ +Q ++
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
+A + D+ I + A ++ L+AE +K + ++A LK D
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
T F+ + + G E +L+ +++ K D ++K ++ K +
Sbjct: 211 TEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEKAIED 554
+ L + ++++ Y + +P + +C+ C SK + +AI
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH---CFSKDEKPVEAIRV 317
Query: 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
C+ L + P A RA+ + E ++ ++QDYE ++ +D+++ + L+
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ GN F++ + + Y + + +P ++ L NRAAC +KL +F+ A++DC + +
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYE 590
P + K R+A ++ + +M Y+
Sbjct: 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 262 MDPE---TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAV 318
M+P+ +K GNE ++ G++ +A+ Y AI +P A SN+ A L A+
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
+C E I++EP + + + R A + + KA+ ++ A
Sbjct: 71 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
MDP E +GN YK G++ EA+ Y A+ + PN A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
+ ++A+ + P+ A + L N Y + G+ ++AI +++ A
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
GNA +KQ + E Y L L P N+ N K G +++AIE AL + P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606
++A + + K ++ +++ Y+ + P++ E Q L
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
E +GN YK G++ EA+ Y A+ + PN A N A G EA+ ++A
Sbjct: 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 325 IRIEPHYHRAHHRLAN 340
+ + P+ A L N
Sbjct: 104 LELYPNNAEAKQNLGN 119
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 259 STRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
+ +DP E +GN YK G++ EA+ Y A+ +DP A N A G
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
EA+ ++A+ ++P A + L N Y + G+ ++AI +++ A
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
E +GN YK G++ EA+ Y A+ +DP A N A G EA+ ++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
+ ++P A + L N Y + G+ ++AI +++ A
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLA-----CGRFEDALAAIQKAAKQDSNNKEVNMVM 492
D DE ++ + A NL G +++A+ QKA + D + E +
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 493 RKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552
GNA +KQ + E Y L LDP ++ N K G +++AI
Sbjct: 76 ------------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Query: 553 EDCNAALNVRP 563
E AL + P
Sbjct: 124 EYYQKALELDP 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL 525
G +++A+ QKA + D + E + GNA +KQ + E Y L
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEYYQKAL 62
Query: 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578
LDP ++ N K G +++AIE AL + P ++A + + K
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
GNA +KQ + E Y L LDP ++ N K G +++AIE AL + P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 565 YSKARLRRADCFAK 578
++A + + K
Sbjct: 68 SAEAWYNLGNAYYK 81
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 259 STRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
+ +DP E +GN YK G++ EA+ Y A+ +DP A N A G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 316 EAVFECREAIRIEP 329
EA+ ++A+ ++P
Sbjct: 121 EAIEYYQKALELDP 134
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
++L + N + GN EA+ LY A+ + P A+ SN + L G+L EA+ +EA
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
IRI P + A+ + N + +V+ A+ + A Q++ A A AH N + K
Sbjct: 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYT----RAIQINPAFA---DAHSNLASIHK 122
Query: 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK 432
+ + I R A+ D P Y A L + + DE +K
Sbjct: 123 DSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMK 169
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 147/357 (41%), Gaps = 37/357 (10%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
+G + AG A+AL+ + AA+ DP+ + +A G+ A+ + + I+++
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKX 91
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEADQVDIAKAKSLQAHLNKCTDAKRT 386
+ A + +L L+ G++++A FK + P ++ K Q+ L K + +R
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE-----EKEAQSQLIKSDEXQRL 146
Query: 387 RD--WNTLIQETRAAIAGGADSAPQIYA-------LQAEALLKLHKHQEADETLKNGPNF 437
R N A D ++ L+AE +K + ++A LK
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497
D T F+ + + G E +L+ +++ K D ++K ++ K
Sbjct: 207 KNDNTEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256
Query: 498 VAAARSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEK 550
+ + L + ++++ Y +P + +C+ C SK + +
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH---CFSKDEKPVE 313
Query: 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
AI C+ L P A RA+ + E ++ ++QDYE ++ +D+++ + L+
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLE 370
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFE 320
R+ + L G+ DY A A+A D + + A R + I G +A+ +
Sbjct: 145 RLRSQALNAFGSGDYTA-----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 321 CREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
+ A +++ A ++++ LY +LG+ E ++
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
+ GN LF K+ E YG + +P +V NRA C K+ Q E+A+ DC AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 562 RPGYSKARLRRADCFAKIEKWEASM 586
KA C ++E ++ ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAI 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
+ LK GN + + EA A Y AI+ +P A Y +N+ + + + +A+ +CR A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
+ ++ +AH L L + ++AI + + A A + + + + L AK
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AK 121
Query: 385 RTRDWNTLIQETR 397
+ R WN+ I+E R
Sbjct: 122 KKR-WNS-IEERR 132
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 489 NMVMRKAKGVAAARS-NGNALFKQAKFSEXXXXY-------GDGLGLDPYNSV------- 533
+M + + G A R +GN+LFK+ K E Y GD Y
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228
Query: 534 ---LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
N AAC KL ++++AI CN L KA RR A++ + +++ D+
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFR 288
Query: 591 ILKKEAPDDEEVDQALQ 607
+K APDD+ + + L+
Sbjct: 289 KAQKYAPDDKAIRRELR 305
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ N FK + Y + L+P N++ NR+ + + A+ D A+ +
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
Y K RRA + K+ A+++DYE + K P D++ QE
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 131
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582
DG L P + N AC+ K+ ++ A++ C AL + P +KA RRA + ++++
Sbjct: 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 323
Query: 583 EASMQDYEILKKEAPDDEEVDQAL 606
+ ++ D + ++ AP+D+ + L
Sbjct: 324 DQALADLKKAQEIAPEDKAIQAEL 347
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 21/131 (16%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAI----------------SIDPNKASYRSNKTAAL 308
E LK +GN +K+ N+ A+ Y + + P S N A
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA 368
+ + AV C EA+ I+P +A +R A + L E ++A+ K A Q
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA-----QEIAP 338
Query: 369 KAKSLQAHLNK 379
+ K++QA L K
Sbjct: 339 EDKAIQAELLK 349
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
+ GN LF K+ E YG + +P +V NRA C K+ Q E+A+ DC AL +
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 562 RPGYSKARLRRADCFAKIEKWEASM 586
KA C ++E ++ ++
Sbjct: 73 DGQSVKAHFFLGQCQLEMESYDEAI 97
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
+ LK GN + + EA A Y AI+ +P A Y +N+ + + + +A+ +CR A
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 69
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384
+ ++ +AH L L + ++AI + + A A + + + + L AK
Sbjct: 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAK 126
Query: 385 RTRDWNTLIQETR 397
+ R WN+ I+E R
Sbjct: 127 KKR-WNS-IEERR 137
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ N FK + Y + L+P N++ NR+ + + A+ D A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
Y K RRA + K+ A+++DYE + K P D++ QE
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 146/353 (41%), Gaps = 29/353 (8%)
Query: 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329
+G + AG A+AL+ + AA+ DP+ + +A G+ A+ + + I ++
Sbjct: 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKX 68
Query: 330 HYHRAHHRLANLYLRLGEVEKAIYHFK---HAGPEAD-----QVDIAKAKSLQAHLNKCT 381
+ A + +L L+ G++++A FK + P + + KA Q ++
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQAL 128
Query: 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441
DA D+ I + A ++ L+AE +K + ++A LK D
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Query: 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501
T F+ + + G E +L+ +++ K D ++K ++ K +
Sbjct: 188 TEAFYKI----------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPY-------NSVLLCNRAACRSKLGQFEKAIED 554
+ L + ++++ Y +P + +C+ C SK + +AI
Sbjct: 238 IESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH---CFSKDEKPVEAIRI 294
Query: 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
C+ L P A RA+ + E ++ ++QDYE ++ +D+++ + L+
Sbjct: 295 CSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLE 347
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 255 CRALSTRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311
C + R+ P ++L + N + GN EA+ LY A+ + P A+ SN + L
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352
Query: 312 GRLLEAVFECREAIRIEPHYHRAHHRLAN 340
G+L EA+ +EAIRI P + A+ + N
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336
AG+ A+ Y +A+ +P+ RS+ L ALGRL EA +AI +P++ A
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 337 RLANLYLRLGEVEKAIYHFKHA 358
L ++ GE+ AI+HF+ A
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKA 195
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 259 STRMDPETLKI---MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLL 315
+ +DP L +GN +A F A+A Y A+S+ PN A N G +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254
Query: 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA 351
A+ R AI ++PH+ A+ LAN G V +A
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECRE 323
P+ + N + G+ AEA Y+ A+ + P A +N G + EAV R+
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
A+ + P + AH LA++ + G++++A+ H+K A
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 55/273 (20%)
Query: 314 LLEAV-FECRE----------AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA 362
LL ++ F+CR AI+ P A+ L N+Y G++++AI H++HA
Sbjct: 38 LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR-- 95
Query: 363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA--LLK 420
K + ++N D +Q +A+ P +Y ++++ LLK
Sbjct: 96 -----LKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL----QYNPDLYCVRSDLGNLLK 146
Query: 421 -LHKHQEAD----ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI 475
L + +EA + ++ PNF V + G + NA + ++ LA FE
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSN--LGCVFNA-----QGEIWLAIHHFE------ 193
Query: 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLL 535
KA D N + + + GN L + F Y L L P ++V+
Sbjct: 194 -KAVTLDPNFLDAYINL------------GNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568
N A + G + AI+ A+ ++P + A
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 130/351 (37%), Gaps = 63/351 (17%)
Query: 258 LSTRMDP---ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL 314
L+ + +P E +GN + G EA+ Y A+ + P+ N AAL+A G +
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ 374
AV A++ P + L NL LG +E+ AKA L+
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE-----------------AKACYLK 160
Query: 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434
A ET+ A + ++ Q E L +H H E TL
Sbjct: 161 A------------------IETQPNFAVAWSNLGCVFNAQGEIWLAIH-HFEKAVTLD-- 199
Query: 435 PNF--------DVDETTRFFGPIGNANLLVVR-------AQVNLACGRFEDALAAIQKAA 479
PNF +V + R F A L + NLAC +E L +
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI-- 257
Query: 480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRA 539
D+ + + + + A + NAL ++ +E Y L L P ++ L N A
Sbjct: 258 --DTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 540 ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590
+ + G E+A+ AL V P ++ A A + K + ++ Y+
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561
++ N FK + Y + L+P N++ NR+ + + A+ D A+ +
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608
Y K RRA + K+ A+++DYE + K P D++ QE
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 495 AKGVAAARSNGNALFKQAKFSEXXXXYGDGLGLDPY---NSVLLCNRAACRSKLGQFEKA 551
A V R GN LFK + Y LGLD +VL NRAAC KL ++KA
Sbjct: 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607
+ + A+ G KA RR+ K+ + + ++ D + P ++ +AL+
Sbjct: 85 ETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDP---NKASYRSNKTAALIALGRLLEAVFEC 321
E L+ GNE +K G++ ALA Y A+ +D ++A N+ A + L +A E
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356
+AI + +A +R + +LG +++A+ +
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQ 123
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 262 MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317
MDP E +GN YK G++ EA+ Y A+ +DPN A N A G EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 318 VFECREAIRIEPHYHRAHHRLAN 340
+ ++A+ ++P+ A L N
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGN 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564
GNA +KQ + E Y L LDP N+ N K G +++AIE AL + P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 565 YSKAR 569
++A+
Sbjct: 76 NAEAK 80
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL 525
G +++A+ QKA + D NN E + GNA +KQ + E Y L
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKAL 70
Query: 526 GLDPYNSVLLCNRAACRSKLG 546
LDP N+ N + K G
Sbjct: 71 ELDPNNAEAKQNLGNAKQKQG 91
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 292 SIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350
++DP N A N A G EA+ ++A+ ++P+ A + L N Y + G+ ++
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 351 AIYHFKHA 358
AI +++ A
Sbjct: 62 AIEYYQKA 69
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 438 DVDETTRFFGPIGNA-------NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490
D ++ F IGNA + Q +L R D L ++ A K+
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE--------- 124
Query: 491 VMRKAKGVA--------AARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACR 542
++KA+ A AR G F ++ + Y + + P ++ NRAA
Sbjct: 125 -LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587
+KL F +AI DCN A+ P + +A +R+A ++++ ++++
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
E ++ G E + ++ A+ Y I P A SN+ AAL L EA+ +C +A
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
Query: 325 IRIEPHYHRAHHRLANLYLRLGEVEKAI 352
I +P++ RA+ R A + + E A+
Sbjct: 200 IEKDPNFVRAYIRKATAQIAVKEYASAL 227
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 52/264 (19%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL-------IALGRLLEAVFE 320
K GN+ YKA F EA+ Y+ A + + +Y +N+ AA A+ L +AV +
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 321 CREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDI----------AKA 370
RE ++ R+ N Y +LG+++K I +++ + E DI K
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127
Query: 371 KSLQAHLN--KCTDAK-------RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421
+A++N K +A+ DW ++ I + A + Y+ +A AL KL
Sbjct: 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-RGYSNRAAALAKL 186
Query: 422 HKHQEA----DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK 477
EA ++ ++ PNF + +A +A + AL +
Sbjct: 187 MSFPEAIADCNKAIEKDPNF--------------VRAYIRKATAQIAVKEYASALETLDA 232
Query: 478 AAKQD------SNNKEVNMVMRKA 495
A +D S+ +E++ + KA
Sbjct: 233 ARTKDAEVNNGSSAREIDQLYYKA 256
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL-- 559
++ GN +K +F E Y L + L NRAA + G++E AI N A+
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 560 --NVRPGY---SKARLRRADCFAKIEKWEASMQDYE 590
+R Y SK+ R + + K+ + +++ Y+
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
E K GN +K G + EA+ YD I+ P SNK ALI LG +A+ C++
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 325 IR 326
+R
Sbjct: 65 LR 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 502 RSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
+ GN+LFKQ + E Y + P N V N+A KLG++ +AI+ C L
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 501 ARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560
AR G F ++ + Y + + P ++ NRAA +KL F +AI DCN A+
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 561 VRPGYSKARLRRADCFAKIEKWEASMQ 587
P + +A +R+A ++++ ++++
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALE 93
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
M E ++ G E + ++ A+ Y I P A SN+ AAL L EA+ +C
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352
+AI +P++ RA+ R A + + E A+
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
K +GN+ YK +F AL YD A +DP +Y +N+ A G + C +AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 328 EPHYHRAHHRLANLYLRLG 346
+ ++A Y R+G
Sbjct: 68 GRENREDYRQIAKAYARIG 86
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--- 561
GN +K+ F Y LDP N + N+AA + G + K E C A+ V
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 562 -RPGY---SKARLRRADCFAKIEKWEASMQDY 589
R Y +KA R + + K EK++ ++ Y
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
K +GN+ YK +F AL YD A +DP +Y +N+ A G + C +AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 328 EPHYHRAHHRLANLYLRLG 346
+ ++A Y R+G
Sbjct: 68 GRENREDYRQIAKAYARIG 86
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--- 561
GN +K+ F Y LDP N + N+AA + G + K E C A+ V
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 562 -RPGY---SKARLRRADCFAKIEKWEASMQDY 589
R Y +KA R + + K EK++ ++ Y
Sbjct: 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322
+PE + G Y AGN+ E++ L++ AI +DP ++ Y K AL L R EAV +C
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV-DCY 63
Query: 323 EAI--RIEPHYHR 333
+ IE Y++
Sbjct: 64 NYVINVIEDEYNK 76
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
K +GN YK +F +A YD AI +DP+ ++ +NK A + E V C +A+ +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 500 AARSNGNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559
A + GNA +KQ F + Y + LDP N N+AA + +F + ++ C A+
Sbjct: 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Query: 560 NV----RPGY---SKARLRRADCFAK 578
V R Y +KA R + F K
Sbjct: 70 EVGRETRADYKLIAKAMSRAGNAFQK 95
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAV 318
T +DP+ +G +G + +A+ + AA+S+ PN NK A +A G + EAV
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAV 231
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
R A+ ++P Y R+ + L + LG +A+ HF A
Sbjct: 232 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 271
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAV 318
T +DP+ +G +G + +A+ + AA+S+ PN NK A +A G + EAV
Sbjct: 150 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAV 208
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
R A+ ++P Y R+ + L + LG +A+ HF A
Sbjct: 209 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 248
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAV 318
T +DP+ +G +G + +A+ + AA+S+ PN NK A +A G + EAV
Sbjct: 173 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAV 231
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
R A+ ++P Y R+ + L + LG +A+ HF A
Sbjct: 232 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 271
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAV 318
T +DP+ +G +G + +A+ + AA+S+ PN NK A +A G + EAV
Sbjct: 164 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAV 222
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
R A+ ++P Y R+ + L + LG +A+ HF A
Sbjct: 223 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 262
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAV 318
T +DP+ +G +G + +A+ + AA+S+ PN NK A +A G + EAV
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAV 271
Query: 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
R A+ ++P Y R+ + L + LG +A+ HF A
Sbjct: 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327
K +GN+ YK +F AL YD A +DP +Y N+ A G + C +AI +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 328 EPHYHRAHHRLANLYLRLG 346
+ +A Y R+G
Sbjct: 68 GRENREDYRMIAYAYARIG 86
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 505 GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--- 561
GN +K+ F Y LDP N + N+AA + G + K E C A+ V
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 562 -RPGY---SKARLRRADCFAKIEKWEASMQDY 589
R Y + A R + + K EK++ ++ Y
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEKYKDAIHFY 102
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 497 GVAAARSN-GNALFKQAKFSEXXXXYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDC 555
G A A N GNA +KQ + E Y L LDP ++ N K G +++AIE
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 556 NAALNVRP 563
AL + P
Sbjct: 61 QKALELDP 68
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA 324
E +GN YK G++ EA+ Y A+ +DP A N A G EA+ ++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 325 IRIEP 329
+ ++P
Sbjct: 64 LELDP 68
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLG------------------LDPYNSVLL 535
K K V A R GN LF Q + E Y D L LD N L
Sbjct: 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW--EASMQDYEILK 593
N + C +G +A E + L KA RRA A+I W + + +D ++L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK--ARIAAWKLDEAEEDLKLLL 124
Query: 594 KEAP 597
+ P
Sbjct: 125 RNHP 128
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFEC 321
+DP+ +G + +G F A+ ++AA+++ P S + A L R EAV
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 322 REAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358
A+ I+P + R+ + L + LG +A+ +F A
Sbjct: 271 TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLG 526
++E L + +KA + N E K + + G FK+ K+ + Y +
Sbjct: 121 KYELHLKSFEKAKESWEMNSE-----EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS 175
Query: 527 LDPYNSVLL---------------CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571
Y S N A C KL F AIE CN AL + K R
Sbjct: 176 WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFR 235
Query: 572 RADCFAKIEKWEASMQDYEILKKEAPDD 599
R + + +E + D++ + + P++
Sbjct: 236 RGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 417 ALLKLHKHQEADETLKNGPNFDVDETTR-FFGPIGNANLLVVRAQVNLACGRFEDALAAI 475
AL K+ + ++ L GP + E + FG NA L+ +E L +
Sbjct: 205 ALEKMQREEQC--ILHLGPRYGFGEAGKPKFGIEPNAELI------------YEVTLKSF 250
Query: 476 QKAAKQ-DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL-------GL 527
+KA + + + KE K + A + G FK K+ + YG + GL
Sbjct: 251 EKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL 304
Query: 528 DPYNS--------VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579
S N A C KL ++ KA+E C+ AL + K RR + +
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 580 EKWEASMQDYE 590
++E++ D+E
Sbjct: 365 NEFESAKGDFE 375
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 417 ALLKLHKHQEADETLKNGPNFDVDETTR-FFGPIGNANLLVVRAQVNLACGRFEDALAAI 475
AL K+ + ++ L GP + E + FG NA L+ +E L +
Sbjct: 205 ALEKMQREEQC--ILYLGPRYGFGEAGKPKFGIEPNAELI------------YEVTLKSF 250
Query: 476 QKAAKQ-DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGL-------GL 527
+KA + + + KE K + A + G FK K+ + YG + GL
Sbjct: 251 EKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 528 DPYNS--------VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579
S N A C KL ++ KA+E C+ AL + K RR + +
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 580 EKWEASMQDYE 590
++E++ D+E
Sbjct: 365 NEFESAKGDFE 375
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575
LGLD N L R + + +FE A D L V P ARL+ + C
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEXXXXYGDGLG 526
++E L + +KA + N E K + + G FK+ K+ + Y +
Sbjct: 121 KYELHLKSFEKAKESWEXNSE-----EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS 175
Query: 527 LDPYNSVLL---------------CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571
Y S N A C KL F AIE CN AL + K R
Sbjct: 176 WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235
Query: 572 RADCFAKIEKWEASMQDYEILKKEAPDD 599
R + + +E + D++ + + P++
Sbjct: 236 RGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 287 YDAAISI-------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339
YD A+ + +P + R AL LGR EA+ + A+ + P+ + H +A
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 340 NLYLRLGEVEKAIYHFKHA 358
Y ++G E+A+ HFK A
Sbjct: 152 FSYEQMGRHEEALPHFKKA 170
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 287 YDAAISI-------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339
YD A+ + +P + R AL LGR EA+ + A+ + P+ + H +A
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 340 NLYLRLGEVEKAIYHFKHA 358
Y ++G E+A+ HFK A
Sbjct: 152 FSYEQMGRHEEALPHFKKA 170
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 287 YDAAISI-------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339
YD A+ + +P + R AL LGR EA+ + A+ + P+ + H +A
Sbjct: 92 YDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 340 NLYLRLGEVEKAIYHFKHA 358
Y ++G E+A+ HFK A
Sbjct: 152 YSYEQMGSHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 287 YDAAISI-------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339
YD A+ + +P + R AL LGR EA+ + A+ + P+ + H +A
Sbjct: 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151
Query: 340 NLYLRLGEVEKAIYHFKHA 358
Y ++G E+A+ HFK A
Sbjct: 152 FSYEQMGRHEEALPHFKKA 170
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 254 LCRALSTRMD-PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG 312
+AL+ R D PE +G +AGNF A +D+ + +DP N+ AL G
Sbjct: 66 FSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125
Query: 313 R 313
R
Sbjct: 126 R 126
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLG------------------LDPYNSVLL 535
KAK V GN L+++ E Y D + LD + LL
Sbjct: 10 KAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL 69
Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
N C+ + ++ + ++ C++ LN KA +R A + W A
Sbjct: 70 LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAV--WNA 116
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 494 KAKGVAAARSNGNALFKQAKFSEXXXXYGDGLG------------------LDPYNSVLL 535
KAK V GN L+++ E Y D + LD + LL
Sbjct: 4 KAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL 63
Query: 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584
N C+ + ++ + ++ C++ LN KA +R A + W A
Sbjct: 64 LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAV--WNA 110
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 317 AVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH 376
A+FE E + +P Y ++ L LY RL + AI + A +++A+ + Q
Sbjct: 28 ALFE--ELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY------AQGIEVAREEGTQKD 79
Query: 377 LNKCTDAK 384
L++ DAK
Sbjct: 80 LSELQDAK 87
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 317 AVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH 376
A+FE E + +P Y ++ L LY RL + AI + A +++A+ + Q
Sbjct: 27 ALFE--ELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY------AQGIEVAREEGTQKD 78
Query: 377 LNKCTDAK 384
L++ DAK
Sbjct: 79 LSELQDAK 86
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 353 YHFKH-AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405
YH+K A D+V + +K + C RT W IQET+ GGAD
Sbjct: 51 YHYKEEAEIICDKVQVKLSKECFHPYSTCITDVRTSHWEEAIQETK----GGAD 100
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 353 YHFKH-AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA 401
YH+K A D+V + +K N C RT W IQET+ A
Sbjct: 61 YHYKEEAEIICDKVQVKLSKECFHPYNTCITDLRTSHWEEAIQETKGGAA 110
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT 386
+EP Y RLA L +G+V + AG EA+ AK SL+ L + + KR
Sbjct: 279 LEPFYP---ERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKELSLEDFLKQMQNLKRL 335
Query: 387 RDWNTLI 393
++ ++
Sbjct: 336 GPFSEIL 342
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413
H + D K + W+TLI +T A +A G DS IY +
Sbjct: 42 HCDATEDLKIIKTWSTLIYDTNAMVARG-DSEKTIYIV 78
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413
H + D K + W+TLI +T A +A G DS IY +
Sbjct: 42 HCDATEDLKIIKTWSTLIYDTNAMVARG-DSEKTIYIV 78
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 342 YLRLGEVEKAIYHFKHAGPEADQVDIAK-----AKSLQAHLNK-CTDAKRTRDWNTLIQE 395
Y+R G+V+ + +F A+ VD A A + + NK TD + +D L+ +
Sbjct: 112 YVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTLLVNK 171
Query: 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434
A A S P++ LLK ++ E + LK+G
Sbjct: 172 GTTADAFFTKSHPEV------KLLKFDQNTETFDALKDG 204
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413
H + D K + W+TLI +T A +A G DS IY +
Sbjct: 42 HCDATEDLKIIKTWSTLIYDTNAMVARG-DSEKTIYIV 78
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413
H + D K + W+TLI +T A +A G DS IY +
Sbjct: 42 HCDATEDLKIIKTWSTLIYDTNAMVARG-DSEKTIYIV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,341,653
Number of Sequences: 62578
Number of extensions: 474429
Number of successful extensions: 1208
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 183
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)