Query 040048
Match_columns 608
No_of_seqs 985 out of 3010
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:35:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4.2E-43 9.2E-48 351.6 22.0 370 208-607 107-497 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 5E-39 1.1E-43 322.4 20.9 351 227-607 111-463 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-30 2.6E-35 289.1 40.3 314 264-601 127-502 (615)
4 PRK15174 Vi polysaccharide exp 100.0 2.3E-30 5E-35 286.2 40.0 326 245-600 55-386 (656)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.7E-30 3.6E-35 288.0 37.8 335 220-602 132-578 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-29 6.5E-34 291.4 35.2 373 202-606 484-877 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-28 2.8E-33 286.0 37.8 386 202-606 382-810 (899)
8 PRK11447 cellulose synthase su 100.0 1E-27 2.2E-32 282.5 40.1 332 245-600 282-705 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 2E-27 4.2E-32 262.9 38.9 310 264-603 42-355 (656)
10 PRK11447 cellulose synthase su 100.0 4.7E-28 1E-32 285.3 35.2 371 201-594 287-739 (1157)
11 KOG0624 dsRNA-activated protei 100.0 2.5E-27 5.4E-32 223.7 29.4 335 261-607 35-382 (504)
12 KOG0547 Translocase of outer m 100.0 2.6E-27 5.7E-32 233.2 28.9 319 264-605 115-542 (606)
13 PRK10049 pgaA outer membrane p 100.0 4.4E-25 9.6E-30 249.2 40.4 344 252-604 69-465 (765)
14 KOG1126 DNA-binding cell divis 99.9 8.8E-26 1.9E-30 231.4 26.8 309 265-603 318-628 (638)
15 KOG0548 Molecular co-chaperone 99.9 3.8E-25 8.2E-30 221.6 30.6 335 266-607 4-467 (539)
16 PRK10049 pgaA outer membrane p 99.9 3.8E-24 8.3E-29 241.6 41.2 332 250-606 33-433 (765)
17 PRK11788 tetratricopeptide rep 99.9 2.7E-24 5.8E-29 226.1 36.8 303 263-594 34-346 (389)
18 KOG0547 Translocase of outer m 99.9 6.1E-25 1.3E-29 216.6 25.8 336 220-602 120-573 (606)
19 PRK09782 bacteriophage N4 rece 99.9 1.8E-23 3.9E-28 236.4 37.7 311 261-605 373-716 (987)
20 PRK09782 bacteriophage N4 rece 99.9 1.1E-23 2.3E-28 238.3 33.7 286 281-600 458-745 (987)
21 KOG1126 DNA-binding cell divis 99.9 3.9E-24 8.6E-29 219.4 25.1 276 262-567 351-626 (638)
22 PRK11788 tetratricopeptide rep 99.9 6.6E-23 1.4E-27 215.5 34.5 284 298-603 35-319 (389)
23 KOG1155 Anaphase-promoting com 99.9 1.9E-22 4.1E-27 198.0 34.5 323 261-607 161-548 (559)
24 KOG2003 TPR repeat-containing 99.9 2.8E-24 6.1E-29 209.5 21.2 413 145-606 174-700 (840)
25 KOG2002 TPR-containing nuclear 99.9 2.2E-23 4.7E-28 221.1 27.1 330 263-606 198-570 (1018)
26 KOG2002 TPR-containing nuclear 99.9 4.7E-23 1E-27 218.6 29.6 327 262-606 305-722 (1018)
27 KOG0550 Molecular chaperone (D 99.9 4.6E-24 9.9E-29 206.7 19.1 307 263-606 48-360 (486)
28 KOG2076 RNA polymerase III tra 99.9 3.2E-22 6.9E-27 211.1 31.7 320 263-597 138-514 (895)
29 KOG1173 Anaphase-promoting com 99.9 1.7E-21 3.7E-26 196.0 26.9 282 261-606 241-529 (611)
30 PRK14574 hmsH outer membrane p 99.9 1.2E-19 2.6E-24 201.6 39.4 342 248-604 84-522 (822)
31 PF13429 TPR_15: Tetratricopep 99.9 5.4E-23 1.2E-27 205.6 10.6 265 267-595 11-277 (280)
32 KOG1155 Anaphase-promoting com 99.9 1.5E-20 3.2E-25 184.9 27.2 272 296-595 162-495 (559)
33 TIGR00540 hemY_coli hemY prote 99.9 1.2E-19 2.7E-24 190.7 35.6 308 264-595 84-399 (409)
34 PRK12370 invasion protein regu 99.9 4.3E-20 9.4E-25 201.3 29.3 268 263-597 257-537 (553)
35 PRK14574 hmsH outer membrane p 99.9 5.2E-19 1.1E-23 196.6 36.5 359 229-606 31-490 (822)
36 KOG0624 dsRNA-activated protei 99.9 2.8E-20 6E-25 176.2 22.3 296 261-572 69-381 (504)
37 KOG1174 Anaphase-promoting com 99.9 3.2E-19 6.8E-24 173.0 28.9 307 270-607 204-512 (564)
38 PRK10747 putative protoheme IX 99.9 2.1E-18 4.6E-23 180.5 37.7 299 264-596 84-391 (398)
39 KOG2076 RNA polymerase III tra 99.9 8.8E-19 1.9E-23 185.4 34.5 346 235-593 142-553 (895)
40 KOG1129 TPR repeat-containing 99.9 2.5E-19 5.4E-24 168.8 25.1 267 273-604 188-467 (478)
41 PRK11189 lipoprotein NlpI; Pro 99.8 3E-19 6.4E-24 179.1 25.9 235 279-581 41-286 (296)
42 KOG1125 TPR repeat-containing 99.8 3.5E-20 7.5E-25 187.6 17.7 240 268-598 289-530 (579)
43 KOG0495 HAT repeat protein [RN 99.8 2.6E-17 5.5E-22 168.0 36.3 310 266-606 552-891 (913)
44 KOG0548 Molecular co-chaperone 99.8 1.3E-18 2.8E-23 175.0 26.6 359 200-591 19-485 (539)
45 KOG0495 HAT repeat protein [RN 99.8 9.2E-18 2E-22 171.2 32.1 312 264-606 516-857 (913)
46 PRK12370 invasion protein regu 99.8 1.5E-18 3.2E-23 189.4 27.8 237 301-594 261-501 (553)
47 PRK11189 lipoprotein NlpI; Pro 99.8 2.6E-18 5.6E-23 172.3 26.2 224 262-547 62-286 (296)
48 PF13429 TPR_15: Tetratricopep 99.8 3.5E-20 7.7E-25 185.3 12.2 241 301-607 11-255 (280)
49 TIGR00540 hemY_coli hemY prote 99.8 1.9E-17 4.2E-22 174.1 32.2 304 234-561 86-399 (409)
50 KOG4162 Predicted calmodulin-b 99.8 1.3E-17 2.9E-22 173.8 30.1 321 262-601 321-789 (799)
51 TIGR02521 type_IV_pilW type IV 99.8 1.3E-17 2.7E-22 161.2 27.4 203 262-560 29-231 (234)
52 TIGR02521 type_IV_pilW type IV 99.8 1.3E-17 2.8E-22 161.2 26.9 202 298-597 31-234 (234)
53 KOG1173 Anaphase-promoting com 99.8 4E-18 8.8E-23 171.9 23.4 257 261-578 275-535 (611)
54 PRK10747 putative protoheme IX 99.8 4.3E-17 9.3E-22 170.6 29.8 304 231-562 83-391 (398)
55 KOG2003 TPR repeat-containing 99.8 9.8E-17 2.1E-21 157.1 29.1 286 266-581 421-709 (840)
56 COG3063 PilF Tfp pilus assembl 99.8 4.5E-17 9.7E-22 147.6 24.4 208 264-567 35-242 (250)
57 KOG1156 N-terminal acetyltrans 99.8 1.1E-16 2.3E-21 164.0 29.6 352 234-602 9-441 (700)
58 COG2956 Predicted N-acetylgluc 99.8 1.6E-16 3.5E-21 150.1 28.2 268 270-598 41-314 (389)
59 COG3063 PilF Tfp pilus assembl 99.8 7.9E-17 1.7E-21 146.0 25.0 212 298-607 35-248 (250)
60 KOG1174 Anaphase-promoting com 99.8 4.2E-17 9E-22 158.4 24.4 289 260-579 228-518 (564)
61 PLN03218 maturation of RBCL 1; 99.8 1.7E-15 3.6E-20 173.3 41.6 301 262-595 470-783 (1060)
62 PLN03081 pentatricopeptide (PP 99.8 2.1E-16 4.7E-21 178.0 33.3 322 248-595 174-557 (697)
63 KOG1129 TPR repeat-containing 99.8 3.5E-18 7.5E-23 161.2 14.6 250 265-576 224-473 (478)
64 PLN02789 farnesyltranstransfer 99.8 1.1E-16 2.3E-21 160.2 26.2 242 264-603 37-310 (320)
65 PLN03218 maturation of RBCL 1; 99.8 3.4E-15 7.3E-20 170.8 41.0 321 248-599 422-754 (1060)
66 KOG1840 Kinesin light chain [C 99.8 8E-17 1.7E-21 167.9 24.4 251 262-594 197-478 (508)
67 KOG1156 N-terminal acetyltrans 99.8 8.1E-16 1.8E-20 157.7 28.3 314 265-603 8-408 (700)
68 COG2956 Predicted N-acetylgluc 99.7 8.5E-15 1.8E-19 138.6 31.8 300 234-593 37-345 (389)
69 KOG4162 Predicted calmodulin-b 99.7 1.1E-15 2.4E-20 159.5 26.7 283 261-566 430-788 (799)
70 cd05804 StaR_like StaR_like; a 99.7 2.3E-14 5E-19 148.7 34.3 316 260-596 2-337 (355)
71 PLN03077 Protein ECB2; Provisi 99.7 9.4E-15 2E-19 168.7 33.5 317 247-595 338-720 (857)
72 KOG1127 TPR repeat-containing 99.7 2E-15 4.4E-20 160.7 24.3 313 276-605 470-889 (1238)
73 KOG0550 Molecular chaperone (D 99.7 2.3E-16 4.9E-21 153.7 15.7 272 261-564 80-353 (486)
74 KOG1125 TPR repeat-containing 99.7 1.1E-16 2.4E-21 162.4 14.1 263 236-587 289-563 (579)
75 PLN02789 farnesyltranstransfer 99.7 1.3E-15 2.9E-20 152.4 21.0 215 278-607 34-262 (320)
76 PLN03081 pentatricopeptide (PP 99.7 1.1E-14 2.3E-19 164.3 29.1 304 261-603 155-531 (697)
77 PLN03077 Protein ECB2; Provisi 99.7 5.3E-14 1.1E-18 162.5 34.1 332 247-606 237-663 (857)
78 KOG1127 TPR repeat-containing 99.7 6E-16 1.3E-20 164.7 15.9 373 200-596 475-914 (1238)
79 COG3071 HemY Uncharacterized e 99.6 6.1E-12 1.3E-16 123.1 34.1 298 265-595 85-390 (400)
80 PRK15359 type III secretion sy 99.6 1.5E-14 3.2E-19 128.6 14.8 120 472-606 13-132 (144)
81 TIGR03302 OM_YfiO outer membra 99.6 8.9E-14 1.9E-18 135.3 21.2 191 261-483 30-234 (235)
82 KOG1130 Predicted G-alpha GTPa 99.6 1.6E-14 3.5E-19 140.4 14.9 305 266-581 19-370 (639)
83 KOG0553 TPR repeat-containing 99.6 1.1E-14 2.3E-19 137.7 12.7 111 497-607 80-190 (304)
84 cd05804 StaR_like StaR_like; a 99.6 3.9E-13 8.4E-18 139.5 25.8 276 262-562 41-337 (355)
85 TIGR03302 OM_YfiO outer membra 99.6 9.3E-14 2E-18 135.2 19.8 176 407-598 32-235 (235)
86 KOG1840 Kinesin light chain [C 99.6 1E-13 2.3E-18 144.7 20.5 140 452-595 283-438 (508)
87 PF12569 NARP1: NMDA receptor- 99.6 4.8E-12 1E-16 134.0 33.1 311 263-596 3-335 (517)
88 PRK10370 formate-dependent nit 99.6 2.1E-13 4.5E-18 127.8 19.5 128 465-604 52-182 (198)
89 PRK15359 type III secretion sy 99.6 6.3E-14 1.4E-18 124.5 14.4 127 428-579 13-139 (144)
90 KOG2376 Signal recognition par 99.6 1.3E-11 2.8E-16 126.0 32.5 344 234-592 14-402 (652)
91 KOG2376 Signal recognition par 99.6 3.3E-11 7.2E-16 123.0 35.1 360 222-606 36-498 (652)
92 PRK04841 transcriptional regul 99.6 7.6E-12 1.7E-16 146.1 35.0 328 263-601 408-766 (903)
93 KOG1130 Predicted G-alpha GTPa 99.5 3.2E-14 6.9E-19 138.4 11.9 280 305-595 24-344 (639)
94 PRK14720 transcript cleavage f 99.5 5.7E-13 1.2E-17 146.8 23.1 275 261-599 28-310 (906)
95 KOG1915 Cell cycle control pro 99.5 1.1E-10 2.4E-15 116.0 33.2 325 261-602 70-440 (677)
96 KOG3785 Uncharacterized conser 99.5 2.4E-11 5.3E-16 116.5 27.3 305 267-600 60-427 (557)
97 PRK15179 Vi polysaccharide bio 99.5 2.3E-12 4.9E-17 141.4 23.3 137 452-600 86-222 (694)
98 KOG0553 TPR repeat-containing 99.5 2.6E-13 5.7E-18 128.3 13.4 103 264-367 81-183 (304)
99 PRK14720 transcript cleavage f 99.5 3.1E-12 6.7E-17 141.1 23.4 239 292-595 25-283 (906)
100 TIGR02552 LcrH_SycD type III s 99.5 5.4E-13 1.2E-17 117.7 14.2 121 473-605 4-124 (135)
101 KOG3785 Uncharacterized conser 99.5 2.8E-11 6E-16 116.1 24.1 340 244-599 69-494 (557)
102 PRK10370 formate-dependent nit 99.5 7.3E-12 1.6E-16 117.4 19.7 156 378-567 21-179 (198)
103 KOG3060 Uncharacterized conser 99.5 7E-12 1.5E-16 115.4 18.8 173 409-603 53-228 (289)
104 COG3071 HemY Uncharacterized e 99.4 2.8E-10 6E-15 111.6 30.6 300 234-561 86-390 (400)
105 PF04733 Coatomer_E: Coatomer 99.4 4.1E-12 8.9E-17 125.8 18.3 261 273-604 10-274 (290)
106 KOG1128 Uncharacterized conser 99.4 5.8E-12 1.3E-16 131.4 19.4 220 332-596 398-617 (777)
107 COG5010 TadD Flp pilus assembl 99.4 1.9E-11 4.2E-16 113.8 20.8 178 391-592 51-228 (257)
108 KOG1915 Cell cycle control pro 99.4 9.7E-10 2.1E-14 109.4 33.3 323 262-594 105-499 (677)
109 PRK15363 pathogenicity island 99.4 4.4E-12 9.5E-17 110.5 13.8 105 499-603 36-143 (157)
110 KOG3060 Uncharacterized conser 99.4 6.5E-11 1.4E-15 109.1 21.5 182 373-577 52-236 (289)
111 PF12569 NARP1: NMDA receptor- 99.4 1.2E-10 2.6E-15 123.4 26.2 276 297-596 3-292 (517)
112 COG5010 TadD Flp pilus assembl 99.4 1.1E-10 2.3E-15 108.8 20.8 176 283-557 52-227 (257)
113 PRK15179 Vi polysaccharide bio 99.4 8.4E-11 1.8E-15 129.2 23.0 140 408-569 86-225 (694)
114 TIGR02552 LcrH_SycD type III s 99.4 2.2E-11 4.8E-16 107.3 14.8 119 429-569 4-122 (135)
115 KOG1128 Uncharacterized conser 99.4 2.3E-11 5E-16 127.0 17.0 222 261-527 395-616 (777)
116 PRK15363 pathogenicity island 99.3 2E-11 4.4E-16 106.4 13.5 100 261-360 32-131 (157)
117 PLN03088 SGT1, suppressor of 99.3 4.3E-11 9.3E-16 122.9 15.2 105 502-606 6-110 (356)
118 KOG4340 Uncharacterized conser 99.3 1.6E-09 3.5E-14 101.9 23.0 293 274-588 20-332 (459)
119 PRK04841 transcriptional regul 99.3 5.6E-09 1.2E-13 122.1 32.5 319 267-596 377-721 (903)
120 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.1E-10 6.7E-15 97.3 14.3 107 500-606 4-116 (119)
121 PLN03088 SGT1, suppressor of 99.2 3.2E-10 6.9E-15 116.5 16.2 114 455-580 5-118 (356)
122 PF04733 Coatomer_E: Coatomer 99.2 4.5E-10 9.7E-15 111.4 15.4 234 263-568 34-272 (290)
123 COG4783 Putative Zn-dependent 99.2 5.2E-09 1.1E-13 105.6 22.6 159 262-489 304-462 (484)
124 KOG4340 Uncharacterized conser 99.2 3E-09 6.6E-14 100.1 19.5 260 308-603 20-313 (459)
125 KOG2047 mRNA splicing factor [ 99.2 1.6E-07 3.6E-12 97.2 33.0 322 265-597 139-581 (835)
126 PF14938 SNAP: Soluble NSF att 99.2 1.5E-09 3.3E-14 108.1 18.3 148 452-605 114-276 (282)
127 KOG2047 mRNA splicing factor [ 99.2 7.1E-08 1.5E-12 99.8 29.9 316 265-595 249-615 (835)
128 KOG1941 Acetylcholine receptor 99.2 3.8E-09 8.2E-14 102.0 19.4 317 264-594 6-359 (518)
129 COG4783 Putative Zn-dependent 99.2 2.3E-09 4.9E-14 108.1 18.6 141 452-604 306-446 (484)
130 PRK10866 outer membrane biogen 99.1 8.7E-09 1.9E-13 99.7 22.0 186 261-478 29-238 (243)
131 KOG4648 Uncharacterized conser 99.1 1.9E-11 4.1E-16 116.7 3.4 240 267-604 100-339 (536)
132 KOG0543 FKBP-type peptidyl-pro 99.1 5.5E-10 1.2E-14 110.5 13.7 106 502-607 212-332 (397)
133 PF13414 TPR_11: TPR repeat; P 99.1 2.4E-10 5.2E-15 87.7 8.3 67 531-597 2-69 (69)
134 PF13414 TPR_11: TPR repeat; P 99.1 2.7E-10 5.8E-15 87.4 8.0 67 263-329 2-69 (69)
135 cd00189 TPR Tetratricopeptide 99.1 1.1E-09 2.3E-14 88.9 12.0 98 501-598 3-100 (100)
136 KOG1941 Acetylcholine receptor 99.1 6.3E-09 1.4E-13 100.5 18.2 289 300-596 8-321 (518)
137 KOG4234 TPR repeat-containing 99.1 1.6E-09 3.4E-14 96.3 12.9 110 498-607 95-209 (271)
138 PF13525 YfiO: Outer membrane 99.1 2E-08 4.4E-13 94.8 21.1 188 262-518 3-198 (203)
139 PF13525 YfiO: Outer membrane 99.1 5.6E-09 1.2E-13 98.6 17.2 166 405-586 2-198 (203)
140 PF14938 SNAP: Soluble NSF att 99.1 2.2E-09 4.8E-14 107.0 14.8 225 279-563 30-268 (282)
141 PRK02603 photosystem I assembl 99.1 3.2E-09 7E-14 97.6 14.5 118 262-406 33-153 (172)
142 PRK10866 outer membrane biogen 99.1 2E-08 4.4E-13 97.1 20.6 172 405-592 29-238 (243)
143 COG4235 Cytochrome c biogenesi 99.1 5.4E-09 1.2E-13 100.2 16.1 125 467-603 137-264 (287)
144 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.6E-09 7.7E-14 90.7 13.3 102 264-366 2-109 (119)
145 KOG3081 Vesicle coat complex C 99.1 1.1E-07 2.4E-12 88.8 23.6 166 409-603 109-279 (299)
146 cd00189 TPR Tetratricopeptide 99.0 2E-09 4.3E-14 87.2 11.1 98 266-364 2-99 (100)
147 PRK02603 photosystem I assembl 99.0 3.8E-09 8.3E-14 97.1 13.9 101 500-600 37-154 (172)
148 CHL00033 ycf3 photosystem I as 99.0 4.5E-09 9.8E-14 96.3 14.1 125 467-601 14-155 (168)
149 CHL00033 ycf3 photosystem I as 99.0 8.1E-09 1.8E-13 94.6 15.6 84 263-346 34-120 (168)
150 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.1E-14 82.2 8.1 64 537-600 2-65 (65)
151 PF09976 TPR_21: Tetratricopep 99.0 2.4E-08 5.2E-13 89.0 17.1 126 458-593 17-145 (145)
152 PRK15331 chaperone protein Sic 99.0 5.3E-09 1.1E-13 91.8 12.3 105 499-604 38-142 (165)
153 PF12895 Apc3: Anaphase-promot 99.0 9.4E-10 2E-14 88.0 7.1 82 276-358 1-84 (84)
154 KOG1070 rRNA processing protei 99.0 1.2E-07 2.6E-12 105.7 24.9 247 313-585 1439-1690(1710)
155 COG0457 NrfG FOG: TPR repeat [ 99.0 1.4E-06 3E-11 83.1 30.0 227 277-564 36-268 (291)
156 PRK10153 DNA-binding transcrip 99.0 2.2E-08 4.8E-13 107.1 18.4 137 452-601 339-488 (517)
157 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.3E-14 87.7 6.4 81 511-592 2-84 (84)
158 KOG0543 FKBP-type peptidyl-pro 99.0 2.8E-08 6.1E-13 98.5 17.5 145 452-597 208-357 (397)
159 PRK10803 tol-pal system protei 99.0 1.6E-08 3.5E-13 98.5 15.0 103 503-605 147-256 (263)
160 PF13432 TPR_16: Tetratricopep 99.0 2.9E-09 6.3E-14 80.5 7.8 65 268-332 1-65 (65)
161 PF09976 TPR_21: Tetratricopep 98.9 6.6E-08 1.4E-12 86.2 17.2 127 266-435 13-145 (145)
162 COG0457 NrfG FOG: TPR repeat [ 98.9 2.3E-06 5E-11 81.5 29.4 228 311-598 36-268 (291)
163 KOG4648 Uncharacterized conser 98.9 3.2E-09 6.9E-14 101.8 8.8 106 502-607 101-206 (536)
164 COG4235 Cytochrome c biogenesi 98.9 2.9E-08 6.4E-13 95.2 14.2 107 259-366 151-260 (287)
165 COG4785 NlpI Lipoprotein NlpI, 98.9 2.4E-07 5.2E-12 83.8 18.8 204 262-482 63-267 (297)
166 PRK15331 chaperone protein Sic 98.9 2.7E-08 5.9E-13 87.3 12.6 99 262-360 35-133 (165)
167 KOG1070 rRNA processing protei 98.9 5.1E-07 1.1E-11 100.9 25.2 237 279-544 1439-1682(1710)
168 KOG3081 Vesicle coat complex C 98.9 1.1E-06 2.4E-11 82.2 22.5 256 273-568 17-278 (299)
169 KOG3617 WD40 and TPR repeat-co 98.8 1.4E-06 3E-11 92.6 25.4 306 252-593 790-1172(1416)
170 PRK11906 transcriptional regul 98.8 1.3E-07 2.7E-12 96.3 16.6 136 454-601 257-407 (458)
171 COG4785 NlpI Lipoprotein NlpI, 98.8 5.7E-07 1.2E-11 81.4 18.6 195 373-596 65-267 (297)
172 KOG4234 TPR repeat-containing 98.8 1.4E-07 3.1E-12 84.1 14.3 102 264-366 95-201 (271)
173 PRK10803 tol-pal system protei 98.8 9.1E-08 2E-12 93.2 14.6 104 262-366 140-250 (263)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.6E-07 3.4E-12 96.3 16.5 133 455-602 172-304 (395)
175 PRK10153 DNA-binding transcrip 98.8 1.5E-07 3.3E-12 100.8 16.7 136 264-407 339-487 (517)
176 PRK11906 transcriptional regul 98.8 2.8E-07 6E-12 93.9 17.1 150 424-595 274-436 (458)
177 KOG2053 Mitochondrial inherita 98.8 1.2E-05 2.7E-10 86.8 29.9 293 274-593 19-335 (932)
178 COG1729 Uncharacterized protei 98.8 1.5E-07 3.4E-12 89.2 14.1 103 502-604 145-253 (262)
179 KOG3617 WD40 and TPR repeat-co 98.7 4.8E-06 1E-10 88.6 25.3 143 451-593 911-1107(1416)
180 PF12688 TPR_5: Tetratrico pep 98.7 3.1E-07 6.7E-12 77.8 13.5 97 264-360 1-103 (120)
181 COG3898 Uncharacterized membra 98.7 2.2E-05 4.7E-10 77.3 27.7 268 262-594 118-391 (531)
182 PF14559 TPR_19: Tetratricopep 98.7 3.9E-08 8.5E-13 75.0 7.2 68 274-341 1-68 (68)
183 PF13371 TPR_9: Tetratricopept 98.7 9.8E-08 2.1E-12 73.9 8.5 66 539-604 2-67 (73)
184 PF13371 TPR_9: Tetratricopept 98.7 1.4E-07 3.1E-12 73.0 8.8 71 270-340 1-71 (73)
185 COG4105 ComL DNA uptake lipopr 98.6 7.6E-06 1.7E-10 77.1 21.0 178 405-599 31-237 (254)
186 PF13512 TPR_18: Tetratricopep 98.6 1.2E-06 2.7E-11 75.3 14.4 105 501-605 13-138 (142)
187 PF14559 TPR_19: Tetratricopep 98.6 7.5E-08 1.6E-12 73.4 6.3 64 543-606 2-65 (68)
188 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 7.6E-07 1.6E-11 91.3 15.2 120 414-558 175-294 (395)
189 COG4700 Uncharacterized protei 98.6 3.7E-06 7.9E-11 74.4 17.2 151 420-594 68-221 (251)
190 PF12688 TPR_5: Tetratrico pep 98.6 1E-06 2.2E-11 74.6 12.9 95 500-594 3-103 (120)
191 KOG2796 Uncharacterized conser 98.6 3.7E-05 8E-10 71.9 23.6 232 297-565 68-319 (366)
192 COG4105 ComL DNA uptake lipopr 98.6 4.3E-05 9.3E-10 72.1 23.7 80 262-341 32-117 (254)
193 PF06552 TOM20_plant: Plant sp 98.6 4.4E-07 9.5E-12 80.4 9.7 94 514-607 7-121 (186)
194 KOG4555 TPR repeat-containing 98.5 2.4E-06 5.3E-11 70.9 12.8 97 503-599 48-148 (175)
195 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.4E-07 9.5E-12 92.4 10.1 68 528-595 71-141 (453)
196 KOG1586 Protein required for f 98.5 2E-05 4.3E-10 72.4 19.7 144 453-603 75-232 (288)
197 COG1729 Uncharacterized protei 98.5 1.4E-06 3E-11 82.8 12.2 103 263-366 140-248 (262)
198 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 7.6E-07 1.6E-11 90.6 10.3 70 259-328 70-142 (453)
199 KOG2796 Uncharacterized conser 98.4 4.3E-05 9.4E-10 71.4 20.0 234 331-600 68-320 (366)
200 PF13512 TPR_18: Tetratricopep 98.4 4.3E-06 9.2E-11 72.0 12.5 105 261-366 7-132 (142)
201 PF13424 TPR_12: Tetratricopep 98.4 3.1E-07 6.6E-12 72.2 4.6 64 532-595 5-75 (78)
202 KOG2053 Mitochondrial inherita 98.4 0.00039 8.4E-09 75.6 28.6 287 261-558 40-334 (932)
203 COG4700 Uncharacterized protei 98.4 2.9E-05 6.3E-10 68.9 16.3 153 310-525 68-220 (251)
204 KOG2471 TPR repeat-containing 98.4 9E-06 2E-10 82.0 14.8 312 267-608 20-377 (696)
205 KOG4555 TPR repeat-containing 98.4 7.8E-06 1.7E-10 68.0 11.7 95 266-360 45-143 (175)
206 KOG2300 Uncharacterized conser 98.4 0.0015 3.2E-08 66.5 29.9 326 263-596 45-475 (629)
207 KOG4642 Chaperone-dependent E3 98.3 1.3E-06 2.9E-11 80.2 7.7 94 502-595 14-107 (284)
208 KOG0376 Serine-threonine phosp 98.3 4.7E-07 1E-11 91.7 5.3 106 503-608 9-114 (476)
209 COG3898 Uncharacterized membra 98.3 0.0013 2.9E-08 65.1 27.9 268 303-601 89-364 (531)
210 KOG4642 Chaperone-dependent E3 98.3 1.5E-06 3.3E-11 79.9 7.4 97 264-360 10-106 (284)
211 KOG2471 TPR repeat-containing 98.3 0.00022 4.8E-09 72.2 23.1 314 272-594 214-683 (696)
212 KOG1914 mRNA cleavage and poly 98.3 0.0036 7.8E-08 64.7 31.3 67 259-326 15-81 (656)
213 KOG0545 Aryl-hydrocarbon recep 98.3 5.9E-06 1.3E-10 76.3 10.3 104 498-601 178-299 (329)
214 PF13424 TPR_12: Tetratricopep 98.3 1.9E-06 4.1E-11 67.6 6.0 64 264-327 5-75 (78)
215 KOG3616 Selective LIM binding 98.3 0.00032 7E-09 74.2 23.7 38 564-601 993-1030(1636)
216 KOG1585 Protein required for f 98.3 0.00023 4.9E-09 66.1 20.0 208 335-590 34-251 (308)
217 PF06552 TOM20_plant: Plant sp 98.2 4.8E-06 1E-10 74.0 8.1 86 280-366 7-113 (186)
218 KOG4507 Uncharacterized conser 98.2 0.00018 3.8E-09 74.4 19.3 104 504-607 613-717 (886)
219 KOG2300 Uncharacterized conser 98.1 0.0052 1.1E-07 62.7 28.5 207 385-601 287-520 (629)
220 PF04184 ST7: ST7 protein; In 98.1 0.00079 1.7E-08 69.1 22.2 60 410-477 261-320 (539)
221 KOG0376 Serine-threonine phosp 98.1 6.6E-06 1.4E-10 83.6 6.7 103 264-367 4-106 (476)
222 PF05843 Suf: Suppressor of fo 98.0 0.00011 2.5E-09 72.9 15.0 140 453-604 2-145 (280)
223 PF02259 FAT: FAT domain; Int 98.0 0.0059 1.3E-07 63.0 28.3 197 270-480 4-212 (352)
224 PF10345 Cohesin_load: Cohesin 98.0 0.0063 1.4E-07 67.7 29.7 321 262-584 57-467 (608)
225 KOG1585 Protein required for f 98.0 7.6E-05 1.6E-09 69.1 11.9 187 409-606 32-234 (308)
226 KOG1550 Extracellular protein 98.0 0.0017 3.6E-08 71.1 24.6 280 250-600 230-543 (552)
227 KOG0551 Hsp90 co-chaperone CNS 98.0 4.2E-05 9.2E-10 73.9 10.5 105 499-603 82-190 (390)
228 KOG1586 Protein required for f 98.0 0.0025 5.5E-08 59.0 21.2 186 264-489 34-232 (288)
229 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.7E-10 55.0 4.9 41 265-305 2-42 (44)
230 PF13428 TPR_14: Tetratricopep 98.0 1.5E-05 3.2E-10 54.6 5.1 40 534-573 3-42 (44)
231 PF10300 DUF3808: Protein of u 98.0 0.0069 1.5E-07 64.7 27.5 160 417-596 197-377 (468)
232 KOG0545 Aryl-hydrocarbon recep 97.9 6E-05 1.3E-09 69.8 9.8 103 263-366 177-297 (329)
233 PF10345 Cohesin_load: Cohesin 97.9 0.0048 1E-07 68.6 26.9 303 280-590 37-428 (608)
234 KOG1258 mRNA processing protei 97.9 0.014 3E-07 61.5 28.2 310 280-602 61-402 (577)
235 KOG2610 Uncharacterized conser 97.9 0.0022 4.8E-08 62.3 19.5 160 415-593 110-274 (491)
236 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00011 2.5E-09 71.0 10.6 103 263-366 80-186 (390)
237 PF05843 Suf: Suppressor of fo 97.8 0.00077 1.7E-08 67.0 16.8 137 266-406 3-140 (280)
238 PF13431 TPR_17: Tetratricopep 97.8 1.8E-05 3.8E-10 50.6 3.1 32 555-586 2-33 (34)
239 PF04184 ST7: ST7 protein; In 97.8 0.00087 1.9E-08 68.8 16.7 104 502-605 263-385 (539)
240 KOG3616 Selective LIM binding 97.8 0.0012 2.6E-08 70.0 17.9 144 301-479 664-818 (1636)
241 PF00515 TPR_1: Tetratricopept 97.8 4.1E-05 8.8E-10 49.1 4.6 33 567-599 2-34 (34)
242 PF13431 TPR_17: Tetratricopep 97.8 2.1E-05 4.5E-10 50.3 3.0 32 287-318 2-33 (34)
243 PF07719 TPR_2: Tetratricopept 97.8 7.1E-05 1.5E-09 47.9 5.2 33 567-599 2-34 (34)
244 PF02259 FAT: FAT domain; Int 97.7 0.0069 1.5E-07 62.5 22.5 136 451-598 145-341 (352)
245 KOG0985 Vesicle coat protein c 97.7 0.012 2.6E-07 65.0 24.0 238 270-555 1054-1335(1666)
246 PF00515 TPR_1: Tetratricopept 97.7 7.2E-05 1.6E-09 47.9 4.3 32 265-296 2-33 (34)
247 KOG0985 Vesicle coat protein c 97.7 0.01 2.2E-07 65.6 22.7 250 262-552 1102-1374(1666)
248 PF07719 TPR_2: Tetratricopept 97.7 9.9E-05 2.1E-09 47.2 4.9 34 264-297 1-34 (34)
249 KOG2610 Uncharacterized conser 97.7 0.002 4.2E-08 62.7 15.4 161 271-479 110-274 (491)
250 PF07079 DUF1347: Protein of u 97.7 0.093 2E-06 53.6 30.3 137 266-402 8-157 (549)
251 PF03704 BTAD: Bacterial trans 97.6 0.0024 5.2E-08 56.7 14.6 93 502-594 10-124 (146)
252 KOG1308 Hsp70-interacting prot 97.6 5.5E-05 1.2E-09 73.6 4.0 95 503-597 119-213 (377)
253 PF13281 DUF4071: Domain of un 97.6 0.0064 1.4E-07 61.7 18.8 179 262-441 139-338 (374)
254 COG2909 MalT ATP-dependent tra 97.6 0.05 1.1E-06 60.0 26.4 253 262-525 413-686 (894)
255 KOG1308 Hsp70-interacting prot 97.5 5.3E-05 1.2E-09 73.7 3.2 97 267-364 117-213 (377)
256 PF13281 DUF4071: Domain of un 97.5 0.017 3.8E-07 58.6 21.3 175 408-601 141-340 (374)
257 PF10300 DUF3808: Protein of u 97.5 0.006 1.3E-07 65.2 19.0 167 269-438 193-377 (468)
258 COG2976 Uncharacterized protei 97.4 0.011 2.3E-07 53.6 16.1 97 502-600 93-193 (207)
259 PF03704 BTAD: Bacterial trans 97.4 0.0032 7E-08 55.9 13.3 94 267-360 9-124 (146)
260 KOG2041 WD40 repeat protein [G 97.4 0.11 2.3E-06 55.6 24.9 180 260-477 688-877 (1189)
261 COG2909 MalT ATP-dependent tra 97.4 0.098 2.1E-06 57.8 25.2 208 378-596 420-648 (894)
262 PF13181 TPR_8: Tetratricopept 97.3 0.00048 1E-08 44.0 4.3 32 567-598 2-33 (34)
263 KOG1914 mRNA cleavage and poly 97.3 0.049 1.1E-06 56.7 20.6 220 316-563 263-503 (656)
264 COG3118 Thioredoxin domain-con 97.2 0.011 2.3E-07 57.2 14.6 141 453-606 135-278 (304)
265 KOG0530 Protein farnesyltransf 97.1 0.21 4.5E-06 47.5 21.4 87 274-360 53-141 (318)
266 COG0790 FOG: TPR repeat, SEL1 97.1 0.14 3E-06 51.3 22.7 184 385-600 53-271 (292)
267 KOG1258 mRNA processing protei 97.1 0.51 1.1E-05 50.2 33.8 316 251-587 64-421 (577)
268 COG3118 Thioredoxin domain-con 97.1 0.027 5.9E-07 54.4 15.7 136 263-440 133-268 (304)
269 KOG1550 Extracellular protein 97.1 0.063 1.4E-06 58.9 20.8 244 279-596 227-505 (552)
270 PF08631 SPO22: Meiosis protei 97.0 0.15 3.3E-06 50.6 21.1 122 275-403 4-151 (278)
271 KOG2041 WD40 repeat protein [G 97.0 0.092 2E-06 56.1 19.7 130 331-478 691-822 (1189)
272 PF13181 TPR_8: Tetratricopept 97.0 0.0013 2.7E-08 42.0 4.0 31 265-295 2-32 (34)
273 COG2976 Uncharacterized protei 96.9 0.21 4.6E-06 45.4 18.6 104 452-565 89-192 (207)
274 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.18 4E-06 51.3 20.0 71 286-359 290-360 (660)
275 PF13174 TPR_6: Tetratricopept 96.9 0.0022 4.7E-08 40.4 4.4 32 568-599 2-33 (33)
276 COG0790 FOG: TPR repeat, SEL1 96.8 0.66 1.4E-05 46.4 24.2 194 272-564 49-269 (292)
277 PF04781 DUF627: Protein of un 96.8 0.014 3E-07 47.9 9.4 91 270-360 2-106 (111)
278 KOG3824 Huntingtin interacting 96.8 0.01 2.2E-07 57.1 9.8 74 503-576 121-194 (472)
279 PF04910 Tcf25: Transcriptiona 96.7 0.075 1.6E-06 54.7 16.8 155 326-485 34-226 (360)
280 PF04910 Tcf25: Transcriptiona 96.7 0.18 3.8E-06 51.9 19.1 138 452-598 40-225 (360)
281 KOG0890 Protein kinase of the 96.7 1.2 2.6E-05 54.7 27.8 102 498-601 1670-1790(2382)
282 PF12968 DUF3856: Domain of Un 96.7 0.079 1.7E-06 43.8 12.8 93 503-595 14-129 (144)
283 PRK10941 hypothetical protein; 96.6 0.013 2.9E-07 57.2 9.9 71 502-572 185-255 (269)
284 PF13176 TPR_7: Tetratricopept 96.6 0.0044 9.5E-08 40.1 4.2 25 569-593 2-26 (36)
285 PF13174 TPR_6: Tetratricopept 96.6 0.0041 8.8E-08 39.1 4.1 31 266-296 2-32 (33)
286 KOG1310 WD40 repeat protein [G 96.4 0.013 2.8E-07 60.5 8.7 100 503-602 379-481 (758)
287 PF08631 SPO22: Meiosis protei 96.4 1.1 2.4E-05 44.4 25.5 227 343-593 4-273 (278)
288 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.5 3.2E-05 45.1 31.7 68 260-327 38-105 (660)
289 PF08424 NRDE-2: NRDE-2, neces 96.3 0.16 3.5E-06 51.5 16.3 145 259-403 14-184 (321)
290 KOG1463 26S proteasome regulat 96.3 0.76 1.6E-05 45.4 19.6 283 268-563 8-318 (411)
291 KOG1538 Uncharacterized conser 96.3 0.34 7.4E-06 51.5 18.4 53 503-558 778-830 (1081)
292 KOG4507 Uncharacterized conser 96.3 0.01 2.2E-07 61.9 7.4 102 463-575 618-719 (886)
293 KOG3783 Uncharacterized conser 96.3 1.8 3.9E-05 45.6 28.5 151 263-418 189-348 (546)
294 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.013 2.9E-07 41.4 5.8 36 534-569 3-38 (53)
295 KOG3824 Huntingtin interacting 96.3 0.013 2.9E-07 56.4 7.4 68 537-604 121-188 (472)
296 KOG0530 Protein farnesyltransf 96.3 0.18 3.9E-06 47.9 14.4 132 461-603 52-184 (318)
297 PF07079 DUF1347: Protein of u 96.3 1.7 3.7E-05 44.7 32.3 125 452-591 379-520 (549)
298 KOG1464 COP9 signalosome, subu 96.2 0.46 9.9E-06 45.3 16.9 124 457-580 150-286 (440)
299 KOG3783 Uncharacterized conser 96.2 1 2.2E-05 47.4 20.7 246 281-565 250-524 (546)
300 PF13176 TPR_7: Tetratricopept 96.2 0.0083 1.8E-07 38.8 3.8 25 267-291 2-26 (36)
301 PF09613 HrpB1_HrpK: Bacterial 96.1 0.1 2.2E-06 46.2 11.5 85 265-349 11-95 (160)
302 PRK10941 hypothetical protein; 96.1 0.048 1E-06 53.4 10.6 71 533-603 182-252 (269)
303 KOG0890 Protein kinase of the 96.1 4.2 9.1E-05 50.3 27.8 292 269-596 1388-1732(2382)
304 COG5159 RPN6 26S proteasome re 96.1 0.57 1.2E-05 45.1 16.9 283 268-563 7-316 (421)
305 PF12968 DUF3856: Domain of Un 96.1 0.28 6.1E-06 40.6 12.8 109 453-561 8-129 (144)
306 PF14561 TPR_20: Tetratricopep 96.0 0.059 1.3E-06 43.2 8.9 75 283-357 7-83 (90)
307 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.031 6.7E-07 39.6 6.2 36 266-301 3-38 (53)
308 PF09613 HrpB1_HrpK: Bacterial 96.0 0.14 3E-06 45.3 11.6 83 501-583 13-95 (160)
309 KOG1464 COP9 signalosome, subu 96.0 0.22 4.8E-06 47.4 13.5 203 276-483 39-262 (440)
310 PF08424 NRDE-2: NRDE-2, neces 95.9 0.2 4.2E-06 50.9 14.6 153 285-438 6-184 (321)
311 smart00028 TPR Tetratricopepti 95.9 0.012 2.6E-07 36.1 3.8 31 568-598 3-33 (34)
312 COG4976 Predicted methyltransf 95.9 0.011 2.5E-07 54.6 4.8 57 509-565 6-62 (287)
313 PF10602 RPN7: 26S proteasome 95.9 0.29 6.2E-06 44.9 13.9 97 264-360 36-141 (177)
314 KOG2396 HAT (Half-A-TPR) repea 95.9 0.075 1.6E-06 54.9 10.8 91 516-606 89-180 (568)
315 KOG1310 WD40 repeat protein [G 95.8 0.032 6.8E-07 57.7 8.0 107 261-368 371-480 (758)
316 PF04781 DUF627: Protein of un 95.8 0.082 1.8E-06 43.5 8.9 92 504-595 2-107 (111)
317 COG3914 Spy Predicted O-linked 95.8 0.24 5.3E-06 52.3 14.4 132 465-606 44-182 (620)
318 smart00028 TPR Tetratricopepti 95.6 0.019 4.1E-07 35.1 3.8 31 266-296 3-33 (34)
319 KOG4814 Uncharacterized conser 95.6 0.32 7E-06 51.7 14.2 95 502-596 358-458 (872)
320 PF14561 TPR_20: Tetratricopep 95.5 0.12 2.7E-06 41.3 8.7 75 517-591 7-83 (90)
321 COG4649 Uncharacterized protei 95.4 1.5 3.4E-05 39.1 15.8 146 415-577 65-211 (221)
322 PRK11619 lytic murein transgly 95.3 6.3 0.00014 44.0 28.2 128 458-594 247-374 (644)
323 KOG2422 Uncharacterized conser 95.2 1.4 3.1E-05 46.6 17.5 101 373-484 342-451 (665)
324 TIGR02561 HrpB1_HrpK type III 95.1 1.2 2.7E-05 38.8 14.1 85 452-548 10-94 (153)
325 COG4649 Uncharacterized protei 95.0 2.2 4.9E-05 38.1 15.6 127 458-594 64-195 (221)
326 PF09986 DUF2225: Uncharacteri 95.0 0.16 3.5E-06 48.0 9.5 90 511-600 90-199 (214)
327 PF10602 RPN7: 26S proteasome 95.0 0.37 7.9E-06 44.2 11.5 97 500-596 38-143 (177)
328 COG4976 Predicted methyltransf 94.9 0.038 8.2E-07 51.3 4.7 61 272-332 3-63 (287)
329 PF04053 Coatomer_WDAD: Coatom 94.8 1.5 3.3E-05 46.3 16.9 130 273-479 270-400 (443)
330 TIGR02561 HrpB1_HrpK type III 94.8 0.43 9.4E-06 41.5 10.4 84 266-349 12-95 (153)
331 PRK13184 pknD serine/threonine 94.5 5.2 0.00011 46.3 21.2 84 250-334 493-588 (932)
332 KOG3807 Predicted membrane pro 94.4 5.8 0.00013 39.2 19.2 30 410-439 277-306 (556)
333 PF09986 DUF2225: Uncharacteri 94.4 0.66 1.4E-05 43.9 11.9 91 466-564 91-197 (214)
334 PRK15180 Vi polysaccharide bio 94.2 0.32 7E-06 50.0 9.7 126 463-600 300-425 (831)
335 KOG1463 26S proteasome regulat 94.2 4 8.7E-05 40.5 16.6 280 302-597 8-318 (411)
336 KOG3364 Membrane protein invol 94.1 0.73 1.6E-05 39.3 10.1 72 532-603 32-108 (149)
337 KOG4814 Uncharacterized conser 94.1 0.41 8.8E-06 51.0 10.4 95 266-360 356-456 (872)
338 KOG3364 Membrane protein invol 93.8 0.69 1.5E-05 39.5 9.4 76 502-577 36-116 (149)
339 KOG1538 Uncharacterized conser 93.7 8.5 0.00018 41.5 19.2 45 545-592 786-830 (1081)
340 KOG2422 Uncharacterized conser 93.7 4.3 9.4E-05 43.2 16.9 138 451-598 283-451 (665)
341 PF15015 NYD-SP12_N: Spermatog 93.5 0.51 1.1E-05 47.8 9.6 89 505-593 183-289 (569)
342 PF13374 TPR_10: Tetratricopep 93.5 0.16 3.6E-06 33.5 4.5 29 533-561 3-31 (42)
343 PF13374 TPR_10: Tetratricopep 93.5 0.16 3.5E-06 33.5 4.4 29 265-293 3-31 (42)
344 KOG2581 26S proteasome regulat 93.4 8.9 0.00019 39.1 17.7 203 268-486 130-354 (493)
345 PRK15180 Vi polysaccharide bio 93.3 12 0.00026 39.1 23.2 103 261-364 320-422 (831)
346 COG3914 Spy Predicted O-linked 93.2 3.2 7E-05 44.2 15.2 133 424-578 47-188 (620)
347 KOG2114 Vacuolar assembly/sort 93.2 3 6.5E-05 46.2 15.4 119 303-435 339-458 (933)
348 PF15015 NYD-SP12_N: Spermatog 92.9 0.58 1.3E-05 47.4 9.0 89 270-358 182-288 (569)
349 COG5191 Uncharacterized conser 92.6 0.2 4.4E-06 48.6 5.1 85 521-605 96-181 (435)
350 COG1747 Uncharacterized N-term 92.3 17 0.00037 38.3 21.5 216 266-531 68-292 (711)
351 PF04053 Coatomer_WDAD: Coatom 92.2 7.9 0.00017 41.1 17.0 135 264-435 295-429 (443)
352 COG2912 Uncharacterized conser 92.0 0.68 1.5E-05 44.7 7.9 71 503-573 186-256 (269)
353 KOG0546 HSP90 co-chaperone CPR 92.0 0.19 4.2E-06 49.8 4.3 105 503-607 227-350 (372)
354 PF07720 TPR_3: Tetratricopept 91.9 0.51 1.1E-05 30.3 4.8 32 265-296 2-35 (36)
355 COG5191 Uncharacterized conser 91.9 0.55 1.2E-05 45.8 7.1 79 261-339 104-183 (435)
356 KOG0128 RNA-binding protein SA 91.5 27 0.00059 39.1 23.0 72 500-571 314-386 (881)
357 PF07720 TPR_3: Tetratricopept 91.5 0.69 1.5E-05 29.7 5.1 33 567-599 2-36 (36)
358 KOG1839 Uncharacterized protei 91.4 1.1 2.4E-05 52.0 10.0 173 262-437 930-1128(1236)
359 COG1747 Uncharacterized N-term 91.1 23 0.00049 37.5 19.2 60 505-564 212-291 (711)
360 PRK13184 pknD serine/threonine 91.1 2.6 5.7E-05 48.6 12.7 135 457-601 480-626 (932)
361 PF12862 Apc5: Anaphase-promot 91.1 0.98 2.1E-05 36.5 7.0 54 274-327 8-70 (94)
362 PF04190 DUF410: Protein of un 90.9 12 0.00025 36.8 15.6 94 265-358 11-116 (260)
363 COG2912 Uncharacterized conser 90.9 1.5 3.3E-05 42.4 9.0 70 533-602 182-251 (269)
364 KOG1839 Uncharacterized protei 90.9 1.2 2.6E-05 51.7 9.7 173 411-595 935-1128(1236)
365 PF12862 Apc5: Anaphase-promot 90.8 1.2 2.6E-05 36.0 7.3 54 543-596 9-71 (94)
366 COG5159 RPN6 26S proteasome re 90.8 6.6 0.00014 38.1 12.9 209 377-596 7-236 (421)
367 KOG2581 26S proteasome regulat 90.6 22 0.00048 36.4 19.9 73 408-486 209-281 (493)
368 PRK11619 lytic murein transgly 90.6 33 0.00072 38.4 33.2 183 385-592 253-465 (644)
369 KOG2396 HAT (Half-A-TPR) repea 90.4 26 0.00056 37.0 32.4 87 252-338 91-180 (568)
370 PF11207 DUF2989: Protein of u 90.3 6.7 0.00014 36.3 12.2 76 511-587 119-199 (203)
371 PF10516 SHNi-TPR: SHNi-TPR; 90.2 0.54 1.2E-05 30.7 3.7 29 567-595 2-30 (38)
372 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2.5 5.4E-05 32.5 7.6 60 267-326 9-71 (80)
373 COG3629 DnrI DNA-binding trans 89.8 1.9 4.1E-05 42.3 8.9 64 498-561 153-216 (280)
374 COG3629 DnrI DNA-binding trans 89.8 2.3 4.9E-05 41.7 9.4 78 280-359 137-214 (280)
375 PF04190 DUF410: Protein of un 89.8 21 0.00046 34.9 19.7 139 404-581 86-243 (260)
376 PF10516 SHNi-TPR: SHNi-TPR; 89.6 0.55 1.2E-05 30.6 3.4 29 265-293 2-30 (38)
377 KOG0529 Protein geranylgeranyl 89.4 15 0.00033 37.7 14.9 169 385-571 40-234 (421)
378 PF07721 TPR_4: Tetratricopept 89.1 0.51 1.1E-05 27.8 2.8 23 568-590 3-25 (26)
379 PF07721 TPR_4: Tetratricopept 88.5 0.58 1.3E-05 27.5 2.8 22 266-287 3-24 (26)
380 COG4455 ImpE Protein of avirul 88.4 8.4 0.00018 36.0 11.3 103 505-607 8-128 (273)
381 PF10579 Rapsyn_N: Rapsyn N-te 87.9 4.7 0.0001 31.0 7.9 67 452-527 6-72 (80)
382 KOG1920 IkappaB kinase complex 87.8 57 0.0012 38.3 19.5 49 503-558 1004-1052(1265)
383 KOG1920 IkappaB kinase complex 86.7 55 0.0012 38.4 18.6 113 452-591 939-1051(1265)
384 KOG0128 RNA-binding protein SA 86.3 63 0.0014 36.4 33.5 142 261-403 110-261 (881)
385 KOG0529 Protein geranylgeranyl 86.1 15 0.00033 37.6 12.7 137 468-604 45-187 (421)
386 PF10373 EST1_DNA_bind: Est1 D 85.8 3.1 6.7E-05 41.1 8.0 62 283-344 1-62 (278)
387 PF10373 EST1_DNA_bind: Est1 D 85.7 2.2 4.8E-05 42.1 6.9 62 517-578 1-62 (278)
388 PF10255 Paf67: RNA polymerase 85.5 7.5 0.00016 40.4 10.6 27 533-559 165-191 (404)
389 COG4941 Predicted RNA polymera 85.4 29 0.00063 34.7 13.8 95 467-574 311-407 (415)
390 COG3947 Response regulator con 85.0 4.1 8.9E-05 39.6 7.8 57 536-592 283-339 (361)
391 PF12739 TRAPPC-Trs85: ER-Golg 84.8 31 0.00066 36.5 15.2 31 266-296 210-240 (414)
392 smart00299 CLH Clathrin heavy 84.5 26 0.00056 30.3 13.8 122 416-577 15-136 (140)
393 PF09670 Cas_Cas02710: CRISPR- 84.1 21 0.00046 37.1 13.4 66 454-527 133-198 (379)
394 PF12739 TRAPPC-Trs85: ER-Golg 83.7 18 0.00039 38.2 12.9 88 503-597 305-401 (414)
395 PF10255 Paf67: RNA polymerase 83.6 3.6 7.8E-05 42.6 7.3 29 498-526 164-192 (404)
396 PF09670 Cas_Cas02710: CRISPR- 83.2 36 0.00079 35.4 14.7 131 266-402 133-270 (379)
397 COG3947 Response regulator con 82.9 4.4 9.6E-05 39.4 7.0 60 300-359 281-340 (361)
398 KOG2063 Vacuolar assembly/sort 82.8 98 0.0021 35.7 21.2 176 301-480 507-712 (877)
399 KOG0276 Vesicle coat complex C 82.6 22 0.00047 38.4 12.4 79 334-436 616-694 (794)
400 COG4941 Predicted RNA polymera 82.3 38 0.00082 33.9 13.1 191 281-490 213-403 (415)
401 KOG0687 26S proteasome regulat 82.1 29 0.00063 34.5 12.3 107 332-439 104-212 (393)
402 KOG0276 Vesicle coat complex C 82.0 21 0.00046 38.4 12.1 134 266-436 616-749 (794)
403 COG4455 ImpE Protein of avirul 81.9 11 0.00025 35.2 9.0 62 271-332 8-69 (273)
404 KOG0686 COP9 signalosome, subu 81.8 21 0.00045 36.6 11.5 142 452-602 150-311 (466)
405 TIGR03504 FimV_Cterm FimV C-te 81.7 4.1 9E-05 27.5 4.7 24 570-593 3-26 (44)
406 KOG4014 Uncharacterized conser 81.6 42 0.0009 30.6 16.1 160 407-595 33-233 (248)
407 KOG0686 COP9 signalosome, subu 80.3 75 0.0016 32.8 17.2 101 333-437 151-258 (466)
408 KOG4151 Myosin assembly protei 80.0 6.1 0.00013 43.7 7.8 101 503-603 58-164 (748)
409 PF00244 14-3-3: 14-3-3 protei 79.8 60 0.0013 31.2 14.0 62 265-326 2-65 (236)
410 KOG0546 HSP90 co-chaperone CPR 79.6 2.3 5.1E-05 42.4 4.1 124 458-581 228-358 (372)
411 KOG4014 Uncharacterized conser 79.2 51 0.0011 30.1 15.3 81 261-344 31-117 (248)
412 KOG4279 Serine/threonine prote 78.9 6.8 0.00015 43.0 7.5 123 332-467 201-335 (1226)
413 smart00386 HAT HAT (Half-A-TPR 78.5 5.4 0.00012 24.1 4.3 29 278-306 1-29 (33)
414 PF04097 Nic96: Nup93/Nic96; 77.9 1.2E+02 0.0027 33.8 19.9 161 303-478 263-440 (613)
415 PF11817 Foie-gras_1: Foie gra 77.8 15 0.00033 35.6 9.3 79 280-358 154-244 (247)
416 PF14863 Alkyl_sulf_dimr: Alky 77.5 6.9 0.00015 34.2 6.0 53 262-314 68-120 (141)
417 PF11817 Foie-gras_1: Foie gra 77.3 73 0.0016 30.9 16.0 55 503-557 183-243 (247)
418 PF12854 PPR_1: PPR repeat 77.0 6.2 0.00013 24.8 4.2 28 262-289 5-32 (34)
419 PF04097 Nic96: Nup93/Nic96; 77.0 1.3E+02 0.0027 33.7 17.3 156 271-436 265-442 (613)
420 smart00386 HAT HAT (Half-A-TPR 76.9 4.2 9.1E-05 24.6 3.5 25 581-605 2-26 (33)
421 PF11207 DUF2989: Protein of u 76.6 65 0.0014 30.0 14.9 49 503-552 146-198 (203)
422 PF12854 PPR_1: PPR repeat 76.3 6.8 0.00015 24.6 4.2 27 531-557 6-32 (34)
423 TIGR03504 FimV_Cterm FimV C-te 76.3 4.9 0.00011 27.2 3.7 25 536-560 3-27 (44)
424 PF00244 14-3-3: 14-3-3 protei 75.8 33 0.00072 33.0 10.9 175 376-560 4-197 (236)
425 smart00299 CLH Clathrin heavy 75.7 52 0.0011 28.4 14.6 48 274-322 17-64 (140)
426 COG5187 RPN7 26S proteasome re 75.3 87 0.0019 30.8 13.1 104 452-562 115-222 (412)
427 KOG3807 Predicted membrane pro 73.8 1E+02 0.0022 30.9 20.3 85 274-360 194-303 (556)
428 KOG2114 Vacuolar assembly/sort 73.0 1.7E+02 0.0038 33.2 24.8 54 538-594 711-764 (933)
429 COG3014 Uncharacterized protei 71.0 1.2E+02 0.0026 30.5 13.3 37 452-488 213-249 (449)
430 COG5187 RPN7 26S proteasome re 67.9 1.3E+02 0.0028 29.7 14.2 127 311-438 88-222 (412)
431 PF04348 LppC: LppC putative l 67.7 1.7 3.7E-05 47.3 0.0 102 407-526 23-126 (536)
432 PF13041 PPR_2: PPR repeat fam 67.7 26 0.00056 24.0 6.1 30 532-561 3-32 (50)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 35 0.00076 29.2 8.0 44 550-593 81-126 (126)
434 cd02682 MIT_AAA_Arch MIT: doma 66.5 22 0.00047 27.3 5.7 28 265-292 7-34 (75)
435 PF11846 DUF3366: Domain of un 65.2 22 0.00047 33.0 6.9 45 552-597 131-175 (193)
436 KOG2561 Adaptor protein NUB1, 63.6 46 0.001 34.5 9.0 95 500-594 165-295 (568)
437 PF13041 PPR_2: PPR repeat fam 63.4 19 0.0004 24.7 4.7 28 265-292 4-31 (50)
438 cd02682 MIT_AAA_Arch MIT: doma 63.3 37 0.0008 26.0 6.4 22 539-560 13-34 (75)
439 PF14863 Alkyl_sulf_dimr: Alky 63.2 26 0.00057 30.6 6.5 45 536-580 74-118 (141)
440 PRK15490 Vi polysaccharide bio 62.9 63 0.0014 35.3 10.5 81 508-590 18-98 (578)
441 KOG2063 Vacuolar assembly/sort 62.9 2.9E+02 0.0064 32.0 17.7 182 374-560 505-712 (877)
442 cd02680 MIT_calpain7_2 MIT: do 62.5 15 0.00032 28.2 4.2 17 310-326 18-34 (75)
443 PF14929 TAF1_subA: TAF RNA Po 61.6 2.4E+02 0.0053 30.8 14.7 136 417-579 318-468 (547)
444 PF01535 PPR: PPR repeat; Int 61.5 13 0.00028 22.1 3.2 22 537-558 5-26 (31)
445 KOG0889 Histone acetyltransfer 60.5 5.7E+02 0.012 34.6 21.4 327 269-605 2487-2851(3550)
446 PF10952 DUF2753: Protein of u 60.1 38 0.00081 28.6 6.3 58 266-323 3-75 (140)
447 KOG0687 26S proteasome regulat 59.8 96 0.0021 31.1 10.1 98 498-595 104-210 (393)
448 cd02680 MIT_calpain7_2 MIT: do 59.6 20 0.00042 27.5 4.4 22 540-561 14-35 (75)
449 TIGR02710 CRISPR-associated pr 58.5 1.8E+02 0.004 30.1 12.5 55 269-323 135-196 (380)
450 PHA02537 M terminase endonucle 58.5 10 0.00023 36.0 3.4 94 506-599 91-211 (230)
451 KOG4279 Serine/threonine prote 57.6 1.1E+02 0.0024 34.2 11.0 105 262-368 199-322 (1226)
452 PF01535 PPR: PPR repeat; Int 57.3 16 0.00036 21.6 3.2 28 568-595 2-29 (31)
453 PRK12798 chemotaxis protein; R 57.2 2.5E+02 0.0054 29.3 18.0 232 237-478 85-321 (421)
454 TIGR03362 VI_chp_7 type VI sec 56.7 2.2E+02 0.0047 28.5 16.7 167 260-436 96-278 (301)
455 KOG4151 Myosin assembly protei 56.2 39 0.00085 37.7 7.6 100 266-366 55-160 (748)
456 PF08626 TRAPPC9-Trs120: Trans 55.3 2.5E+02 0.0053 34.4 15.0 144 451-595 241-474 (1185)
457 TIGR00756 PPR pentatricopeptid 55.2 26 0.00057 21.1 4.0 25 535-559 3-27 (35)
458 PF09205 DUF1955: Domain of un 54.3 78 0.0017 27.3 7.4 55 507-561 95-149 (161)
459 KOG1497 COP9 signalosome, subu 52.6 2.6E+02 0.0056 28.1 12.0 93 501-594 106-212 (399)
460 PHA02537 M terminase endonucle 52.4 57 0.0012 31.1 7.2 106 460-565 91-211 (230)
461 cd02679 MIT_spastin MIT: domai 51.6 27 0.00059 27.0 4.1 15 312-326 22-36 (79)
462 KOG2066 Vacuolar assembly/sort 50.9 4.2E+02 0.0091 30.1 24.1 73 273-348 365-439 (846)
463 KOG1497 COP9 signalosome, subu 49.9 2.8E+02 0.0061 27.8 18.0 104 409-524 104-210 (399)
464 TIGR02710 CRISPR-associated pr 49.7 3.2E+02 0.0069 28.4 13.7 60 457-523 135-196 (380)
465 TIGR00756 PPR pentatricopeptid 49.6 35 0.00076 20.6 3.9 28 568-595 2-29 (35)
466 PF12921 ATP13: Mitochondrial 49.4 1.7E+02 0.0036 25.0 9.8 62 502-563 6-83 (126)
467 PF10938 YfdX: YfdX protein; 49.4 1.5E+02 0.0032 26.4 9.0 106 455-560 5-145 (155)
468 PF07163 Pex26: Pex26 protein; 49.2 2.7E+02 0.0059 27.4 12.1 90 382-476 92-182 (309)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 48.7 1.7E+02 0.0037 24.9 9.8 85 466-559 40-126 (126)
470 COG5536 BET4 Protein prenyltra 47.8 1.6E+02 0.0034 29.0 9.2 160 426-607 50-234 (328)
471 PRK15490 Vi polysaccharide bio 47.7 1.2E+02 0.0025 33.3 9.5 56 299-356 43-98 (578)
472 PF07219 HemY_N: HemY protein 47.2 1.2E+02 0.0027 24.9 7.8 52 496-547 57-108 (108)
473 PF05053 Menin: Menin; InterP 47.1 92 0.002 33.6 8.3 58 549-606 296-364 (618)
474 PF10952 DUF2753: Protein of u 47.1 1.2E+02 0.0027 25.7 7.4 69 455-525 4-77 (140)
475 PF13812 PPR_3: Pentatricopept 47.0 48 0.001 20.0 4.2 23 536-558 5-27 (34)
476 PF11846 DUF3366: Domain of un 46.5 58 0.0013 30.0 6.4 50 514-564 127-176 (193)
477 PF06957 COPI_C: Coatomer (COP 46.4 2.3E+02 0.005 29.8 11.1 146 458-603 124-337 (422)
478 PF04348 LppC: LppC putative l 46.1 6.7 0.00015 42.8 0.0 100 373-481 24-127 (536)
479 smart00101 14_3_3 14-3-3 homol 46.1 2.9E+02 0.0062 26.8 15.9 174 376-560 4-199 (244)
480 KOG1938 Protein with predicted 45.7 95 0.0021 35.7 8.6 182 270-481 182-384 (960)
481 PF13812 PPR_3: Pentatricopept 45.6 55 0.0012 19.7 4.3 28 568-595 3-30 (34)
482 PF04212 MIT: MIT (microtubule 44.9 48 0.001 24.7 4.5 23 269-291 10-32 (69)
483 PF04840 Vps16_C: Vps16, C-ter 44.5 3.5E+02 0.0076 27.4 21.3 267 267-588 3-284 (319)
484 PF04212 MIT: MIT (microtubule 44.5 55 0.0012 24.3 4.8 23 537-559 10-32 (69)
485 cd02681 MIT_calpain7_1 MIT: do 44.0 47 0.001 25.5 4.3 26 267-292 9-34 (76)
486 KOG4521 Nuclear pore complex, 43.8 6.4E+02 0.014 30.2 16.0 160 262-429 918-1123(1480)
487 cd02684 MIT_2 MIT: domain cont 42.0 47 0.001 25.4 4.1 34 279-327 2-35 (75)
488 cd02683 MIT_1 MIT: domain cont 41.3 51 0.0011 25.4 4.2 24 268-291 10-33 (77)
489 COG4259 Uncharacterized protei 41.2 1.2E+02 0.0026 24.7 6.2 41 566-606 72-112 (121)
490 PF08626 TRAPPC9-Trs120: Trans 41.2 3.7E+02 0.0081 32.8 13.6 33 262-294 240-272 (1185)
491 PF13226 DUF4034: Domain of un 41.1 2.8E+02 0.0062 27.3 10.3 113 459-581 7-148 (277)
492 cd00280 TRFH Telomeric Repeat 40.5 3E+02 0.0064 25.3 10.4 46 503-549 116-161 (200)
493 PF07219 HemY_N: HemY protein 40.5 1.3E+02 0.0028 24.8 6.9 27 267-293 62-88 (108)
494 PF09205 DUF1955: Domain of un 40.4 2.5E+02 0.0054 24.4 14.1 132 459-595 9-149 (161)
495 cd02681 MIT_calpain7_1 MIT: do 40.4 65 0.0014 24.8 4.6 28 533-560 7-34 (76)
496 cd02677 MIT_SNX15 MIT: domain 40.3 40 0.00087 25.8 3.5 33 548-595 3-35 (75)
497 PF05053 Menin: Menin; InterP 39.3 2.7E+02 0.0059 30.2 10.3 82 453-561 258-347 (618)
498 PF12921 ATP13: Mitochondrial 39.3 2.4E+02 0.0053 24.0 9.4 74 410-483 4-83 (126)
499 PF08238 Sel1: Sel1 repeat; I 38.0 75 0.0016 20.0 4.2 13 280-292 24-36 (39)
500 COG3107 LppC Putative lipoprot 37.8 5.6E+02 0.012 27.8 16.5 159 304-490 69-241 (604)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-43 Score=351.63 Aligned_cols=370 Identities=18% Similarity=0.156 Sum_probs=338.3
Q ss_pred CccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCC---------------CCCcchhHHHHhh--hCCCCHHH
Q 040048 208 NTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPAS---------------SSSAEPTSLCRAL--STRMDPET 266 (608)
Q Consensus 208 ~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~---------------~~~~~a~~~~~~~--~~~~~~~~ 266 (608)
.++..+|++.++ ++|++++.. .+.|...|+.++.+.+. +..+.+...+... +.|....+
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 456677777777 688887766 56777777777777763 2333455555443 23666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 346 (608)
...+|+.+-..|+..+|..+|.+|++.+|..+.+|.++|.++...|+...|+..|+++++++|+..++|++||.+|...+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e 426 (608)
.+++|+.+|.+++. +.|++ ..++-+++.+|..+|+.+-||..|+++++..|.. +++|.++|.++...|+..+
T Consensus 267 ~~d~Avs~Y~rAl~-lrpn~------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 267 IFDRAVSCYLRALN-LRPNH------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKDKGSVTE 338 (966)
T ss_pred cchHHHHHHHHHHh-cCCcc------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHhccchHH
Confidence 99999999999999 88988 7889999999999999999999999999999988 6899999999999999999
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN 506 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~ 506 (608)
|..+|.+++.+.|.. +.++.++|.+|..+|.+++|..+|.++++..|....+.. ++|.
T Consensus 339 a~~cYnkaL~l~p~h----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n------------NLa~ 396 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNH----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN------------NLAS 396 (966)
T ss_pred HHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh------------hHHH
Confidence 999999999999984 999999999999999999999999999999999888876 9999
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586 (608)
Q Consensus 507 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 586 (608)
+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+||.++|..++++.+||.+|...|+..+|+
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHhh
Q 040048 587 QDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 587 ~~~~~al~l~P~~~~~~~~L~ 607 (608)
..|+.++++.|+.+++...|.
T Consensus 477 ~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHHccCCCCchhhhHHH
Confidence 999999999999999877653
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5e-39 Score=322.44 Aligned_cols=351 Identities=20% Similarity=0.160 Sum_probs=304.3
Q ss_pred ccCCCcccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 040048 227 KQNDHPQNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNK 304 (608)
Q Consensus 227 ~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l 304 (608)
+.++.++.+-..+-.+...+...++...++... .|...++|.++|.++...|+.+.|..+|.++|+++|+...++..+
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 335555555545555555556666777776653 367788888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHH
Q 040048 305 TAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384 (608)
Q Consensus 305 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (608)
|.++..+|+..+|..+|.++++..|..+.+|.+||.++...|+...|+..|++++. ++|.. +.+|+++|.++.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-ldP~f------~dAYiNLGnV~k 263 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-LDPNF------LDAYINLGNVYK 263 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc-CCCcc------hHHHhhHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888 88887 788889999999
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA 464 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~ 464 (608)
..+.++.|+..|.+++...|.. ..++.++|.+|.++|..+-|+..|++++++.|.. ..++.++|..+-.
T Consensus 264 e~~~~d~Avs~Y~rAl~lrpn~-A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F----------~~Ay~NlanALkd 332 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLRPNH-AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF----------PDAYNNLANALKD 332 (966)
T ss_pred HHhcchHHHHHHHHHHhcCCcc-hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc----------hHHHhHHHHHHHh
Confidence 9999999999999998888877 4678888888889999999999999999988886 7888889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK 544 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 544 (608)
.|+..+|+.+|.+++.+.|++.+... ++|.++.++|.+++|..+|.++++..|..+.++.+||.+|.+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~------------NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMN------------NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 99999999999999999998888875 999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|++++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|...++...|.
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999887764
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-30 Score=289.13 Aligned_cols=314 Identities=20% Similarity=0.283 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
+..+..+|+.++..|+|++|+.+|+++|.+.|+ +..|.++|.||..+|++++|+..++++++++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 557889999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHH-H-----------------------------HHHHH-----------------
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKA-K-----------------------------SLQAH----------------- 376 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~-~-----------------------------~~~~~----------------- 376 (608)
.+|++++|+..|..+.. +++...... . ....+
T Consensus 206 ~lg~~~eA~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCI-IDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHH-hCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999999988876643 332111000 0 00000
Q ss_pred ----------HHHhHHH---HHhhcHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048 377 ----------LNKCTDA---KRTRDWNTLIQETRAAIAGGA--DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441 (608)
Q Consensus 377 ----------~~~~~~~---~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 441 (608)
..++... ...+.|++|+..|+++++.+. .....++..+|.++..+|++++|+..|++++.++|..
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 1111111 123579999999999998752 2335678999999999999999999999999999975
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY 521 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 521 (608)
...++.+|.++...|++++|+..|+++++.+|++..++. .+|.++...|++++|+.+|
T Consensus 365 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 365 ----------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY------------HRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHH
Confidence 889999999999999999999999999999999998876 8999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 522 GDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 522 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++..+|++++|++.|+++++++|++..
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997643
No 4
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.3e-30 Score=286.19 Aligned_cols=326 Identities=12% Similarity=0.008 Sum_probs=296.0
Q ss_pred CCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 245 SSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322 (608)
Q Consensus 245 ~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 322 (608)
.+...++..+++.++. |.++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455666666643 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
+++.++|++..++..++.++...|++++|+..+.+++. ..|+... .+... ..+...|++++|+..+++++..
T Consensus 135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~-~~P~~~~------a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ-EVPPRGD------MIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCCCCHH------HHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998887 7777632 22222 3467889999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHH
Q 040048 403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED----ALAAIQKA 478 (608)
Q Consensus 403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a 478 (608)
.|.........++.++...|++++|+..|++++...|++ ..++..+|.++...|++++ |+..|+++
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 765545566777899999999999999999999999985 8899999999999999986 89999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 479 AKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 479 l~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
+.++|++..++. .+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 277 l~l~P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 277 LQFNSDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999988876 88999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 559 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
+...|++..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999988888889999999999999999999999999864
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.7e-30 Score=287.99 Aligned_cols=335 Identities=16% Similarity=0.177 Sum_probs=236.9
Q ss_pred ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK 297 (608)
Q Consensus 220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 297 (608)
.+|+.+.+. ++.|...|..++...+ ++..|.++|.++...|++++|+..++++++++|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p------------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP------------------DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC------------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Confidence 556666555 6666666665554432 45678888889999999999999999999999988
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------------
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRI-------------------------------------------------- 327 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------------------------------------------- 327 (608)
..+|+.+|.+|..+|++++|+..|..++.+
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP 273 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence 888888888888888888887654333211
Q ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 328 -----------------------------------------------------EPHYHRAHHRLANLYLRLGEVEKAIYH 354 (608)
Q Consensus 328 -----------------------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~ 354 (608)
.|+...++..+|.++..+|++++|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233344566666666667777777777
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcC
Q 040048 355 FKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434 (608)
Q Consensus 355 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~a 434 (608)
|++++. ++|.. ...++.++.++...|++++|+..++++++.+|++ +.++..+|.++...|++++|+..|+++
T Consensus 354 ~~kal~-l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 354 LSKSIE-LDPRV------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSED-PDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHH-cCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766 66655 4556666666777777777777777777776665 456666777777777777777777777
Q ss_pred CCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048 435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF 514 (608)
Q Consensus 435 l~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~ 514 (608)
+.++|++ ..++..+|.++..+|++++|+..|++++...|+++.++. .+|.++...|++
T Consensus 426 l~l~P~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~------------~lg~~~~~~g~~ 483 (615)
T TIGR00990 426 IDLDPDF----------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN------------YYGELLLDQNKF 483 (615)
T ss_pred HHcCccC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHccCH
Confidence 7776653 566666777777777777777777777777777666654 677888888888
Q ss_pred HHHHHHHHHhhcCCCCCHHH------HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 515 SEAAAAYGDGLGLDPYNSVL------LCNRAACR-SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 515 ~eA~~~~~~al~~~p~~~~~------~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
++|+..|++++.+.|..... +...+.++ ...|++++|+.+|++++.++|++..++..+|.++..+|++++|+.
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 88888888888877754222 22223333 336788888888888888888887788888888888888888888
Q ss_pred HHHHHHHhCCCCHHH
Q 040048 588 DYEILKKEAPDDEEV 602 (608)
Q Consensus 588 ~~~~al~l~P~~~~~ 602 (608)
+|++++++.+...+.
T Consensus 564 ~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 564 LFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHhccHHHH
Confidence 888888887765554
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3e-29 Score=291.38 Aligned_cols=373 Identities=14% Similarity=0.127 Sum_probs=266.7
Q ss_pred ccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCC---------------CCcchhHHHHhh--hC
Q 040048 202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASS---------------SSAEPTSLCRAL--ST 260 (608)
Q Consensus 202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~---------------~~~~a~~~~~~~--~~ 260 (608)
|+..|.+++...|.+... .++.++... +++|...|+.++...+.+ ..+++...+... ..
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555566666666655544 444444333 445555555554443321 222333333333 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.+...++.++..+...|++++|+.++++++...|.++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 643 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++...|++++|+..|++++. ..|++ ...+..++.++...|++++|+..++.+....|.. +..+..+|.++..
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 715 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALE-LKPDN------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLR 715 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-hHHHHHHHHHHHH
Confidence 66666666666666666666 56655 3455556666666666666666666666665554 3556667777777
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.|++++|+..|++++...|+ ...+..++.++...|++++|+..+++++...|++..++.
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---------- 774 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPS-----------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT---------- 774 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCC-----------chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH----------
Confidence 77777777777777776665 245566777777777777777777777777777766554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
.+|.++...|++++|+.+|+++++..|+++.++..+|.++...|+ .+|+.++++++.+.|+++..+..+|.++...|
T Consensus 775 --~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 --ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred --HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999999 88999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 581 KWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
++++|+.+|+++++++|.+++++..|
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 99999999999999999999887655
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.3e-28 Score=286.04 Aligned_cols=386 Identities=17% Similarity=0.222 Sum_probs=307.5
Q ss_pred ccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCC---------------CCcchhHHHHhhh--C
Q 040048 202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASS---------------SSAEPTSLCRALS--T 260 (608)
Q Consensus 202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~---------------~~~~a~~~~~~~~--~ 260 (608)
|...|.++....|..... .+|.++... +++|...|..++...+.. ..+++...+..+. .
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 555566666666665444 455544443 566677777666655432 2223444444443 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++..+..+|.++...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|++++...|.+..++..++.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++...|++++|+..+++++. .+|.+ ...++.++..+...|++++|+..+++++...|.+ +..+..+|.++..
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 613 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAE-LNPQE------IEPALALAQYYLGKGQLKKALAILNEAADAAPDS-PEAWLMLGRAQLA 613 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCccc------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 99999999999999999988 77776 4566777888888888999998888888887766 4678888888888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH----
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK---- 496 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~---- 496 (608)
.|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..|++++...|++...+..+..+.
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDS----------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 899999999888888887764 677888888888888888888888888888888776654432220
Q ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 497 ------------------GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 497 ------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.++++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 13345677888888888888888888888887776 66777888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 559 LNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 559 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
++..|++..+++.+|.+|..+|++++|+.+|+++++.+|+++.++..|
T Consensus 763 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888888888888888888888888888888888887776654
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-27 Score=282.48 Aligned_cols=332 Identities=15% Similarity=0.142 Sum_probs=282.1
Q ss_pred CCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHH
Q 040048 245 SSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS--------------YRSNKTAAL 308 (608)
Q Consensus 245 ~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~la~~~ 308 (608)
.+..++|...++..+. |.+++++..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 3445566666666543 788999999999999999999999999999999998643 123558889
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH---------------
Q 040048 309 IALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL--------------- 373 (608)
Q Consensus 309 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~--------------- 373 (608)
...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++++. ++|.+......+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR-MDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 888764322111
Q ss_pred ---------------------HHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048 374 ---------------------QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK 432 (608)
Q Consensus 374 ---------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~ 432 (608)
..+..++..+...|++++|+..|+++++.+|++ +.++..+|.+|...|++++|+..++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 122345667778899999999999999999987 5688999999999999999999999
Q ss_pred cCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------
Q 040048 433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK-------------------------------- 480 (608)
Q Consensus 433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------------------------------- 480 (608)
+++...|++ +..++.++.++...+++++|+..++++..
T Consensus 520 ~al~~~P~~----------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 520 RLAQQKPND----------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHcCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999875 66666677777777777777776665432
Q ss_pred --------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 481 --------QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 481 --------~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
..|.+.. .+..+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+
T Consensus 590 ~eA~~~l~~~p~~~~------------~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 590 AEAEALLRQQPPSTR------------IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHHhCCCCch------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2233333 33589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
+.|+++++..|+++.++..+|.++..+|++++|+++|++++...|+++
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999999999999999999999999999887654
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=2e-27 Score=262.93 Aligned_cols=310 Identities=14% Similarity=0.089 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
..-+...+..+...|++++|+..++.++...|+++.+++.+|.+....|++++|+..|++++.++|+++.++..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33466678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
..|++++|+..|++++. ++|++ ...+..++.++...|++++|+..+.+++...|+... .+..++ .+...|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~-l~P~~------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~~-~l~~~g~ 192 (656)
T PRK15174 122 KSKQYATVADLAEQAWL-AFSGN------SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATCL-SFLNKSR 192 (656)
T ss_pred HcCCHHHHHHHHHHHHH-hCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHHH-HHHHcCC
Confidence 99999999999999999 89988 667888899999999999999999999999888754 444443 4889999
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
+++|+..+++++...|.. .......++.++...|++++|+..|++++...|++..++. .
T Consensus 193 ~~eA~~~~~~~l~~~~~~---------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~ 251 (656)
T PRK15174 193 LPEDHDLARALLPFFALE---------RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR------------S 251 (656)
T ss_pred HHHHHHHHHHHHhcCCCc---------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH------------H
Confidence 999999999998887532 1344566788999999999999999999999999988775 8
Q ss_pred HHHHHHHcCCHHH----HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 504 NGNALFKQAKFSE----AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 504 lg~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 9999999999996 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 580 EKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
|++++|+..|+++++.+|++..+.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHH
Confidence 999999999999999999987644
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.7e-28 Score=285.30 Aligned_cols=371 Identities=14% Similarity=0.071 Sum_probs=300.4
Q ss_pred cccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHH
Q 040048 201 SGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYK 276 (608)
Q Consensus 201 ~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~ 276 (608)
.|+..|.+++..+|+...+ .+|.++... +++|+..|+.++...+..... .....+........+..+|.++..
T Consensus 287 ~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~---~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 287 KAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR---DKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch---hHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3777788888888887766 788877666 777888888887776653311 011111111122334566889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH----------------
Q 040048 277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN---------------- 340 (608)
Q Consensus 277 ~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~---------------- 340 (608)
.|++++|+.+|++++.++|++..++..+|.++...|++++|+..|+++++++|++..++..++.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998776655544
Q ss_pred --------------------------HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHH
Q 040048 341 --------------------------LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQ 394 (608)
Q Consensus 341 --------------------------~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 394 (608)
++...|++++|+..|++++. ++|++ ...++.++.++...|++++|+.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~-~~P~~------~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA-LDPGS------VWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 44567999999999999999 99988 5678899999999999999999
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccccc------------------------------
Q 040048 395 ETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTR------------------------------ 444 (608)
Q Consensus 395 ~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~------------------------------ 444 (608)
.+++++...|++. ..++.++..+...+++++|+..++++..........
T Consensus 517 ~l~~al~~~P~~~-~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKPNDP-EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999988774 556666777777777777777776654321110000
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524 (608)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 524 (608)
+.....+..++..+|.++...|++++|+..|+++++.+|++..++. .+|.++...|++++|+..|+++
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~------------~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL------------GLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHH
Confidence 0001123677889999999999999999999999999999998876 8999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS------KARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 525 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+...|+++.++..+|.++...|++++|+++|++++...|+++ .++..+|.++...|++++|+..|++++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876543 4667789999999999999999999986
No 11
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=2.5e-27 Score=223.65 Aligned_cols=335 Identities=19% Similarity=0.252 Sum_probs=302.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+.+.+-.+.+|..++..|++..|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+....|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHH---------HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAK---------AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY 411 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 411 (608)
+++.+|++++|...|+.++. -+|++... ......+......+...||+..++.....++++.|-+ ..++
T Consensus 115 vllK~Gele~A~~DF~~vl~-~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-a~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQ-HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-ASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHh-cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-hHHH
Confidence 99999999999999999998 77754221 1112223334445666789999999999999998877 4788
Q ss_pred HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
...+.+|...|+...|+..++.+-++..++ .+.++.++.+++..|+.+.++...+++++++|++...+..
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn----------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDN----------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccc----------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 999999999999999999999999887764 8899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV----LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
+..++.+.....-+......++|.++++..++.++.+|..+. .+..+..|+..-|++.+|+..+.++|.++|++..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 888888777777788889999999999999999999998544 3446788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
++..+|.+|.....|+.|+..|++|.+++++|..++.+|.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-27 Score=233.19 Aligned_cols=319 Identities=20% Similarity=0.248 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
+..+...|+-++..|+|++||.+|.+||+++|+.+..|.+++.||...|+|++.++.+.++++++|++..++++.+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 55788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHH------------------h------------CCC-C---Cchh-----------------------
Q 040048 344 RLGEVEKAIYHFKH------------------A------------GPE-A---DQVD----------------------- 366 (608)
Q Consensus 344 ~~g~~~~A~~~~~~------------------a------------l~~-~---~p~~----------------------- 366 (608)
.+|++.+|+....- . +.. . -|..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 99999998754321 0 000 0 0000
Q ss_pred ---H------------------------------------------HHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048 367 ---I------------------------------------------AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA 401 (608)
Q Consensus 367 ---~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 401 (608)
. .......++...|..+.-.|+...|...++++|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 0011133444455556666888888888888888
Q ss_pred cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 402 GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481 (608)
Q Consensus 402 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (608)
++|... ..|+.++.+|....+.++-...|.++..++|.+ +.+|+.+|.+++-++++++|+..|++++.+
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n----------~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN----------PDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC----------CchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888763 458888888888888888888888888888875 778888888888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
+|++.-.+. .++.+.+++++++++...|+.++...|..++++...|.++..+++|++|++.|++|+++
T Consensus 424 ~pe~~~~~i------------Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 424 DPENAYAYI------------QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred ChhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 888876654 45555555555555555555555555555555555555555555555555555555555
Q ss_pred CCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 562 RPG------YSKARLRRADCFA-KIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 562 ~p~------~~~a~~~la~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
.|. ++..+.+.|.+.. -.+++..|+..+++|++++|....++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 544 2222222222211 1244444555555555555544444433
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=4.4e-25 Score=249.21 Aligned_cols=344 Identities=14% Similarity=0.061 Sum_probs=279.4
Q ss_pred hHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040048 252 TSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP 329 (608)
Q Consensus 252 ~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 329 (608)
..+++.. ..|.+++++..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++++++.|
T Consensus 69 ~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 69 LTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4444443 23778999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh--------------------------H---HH-H---------
Q 040048 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD--------------------------I---AK-A--------- 370 (608)
Q Consensus 330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~--------------------------~---~~-~--------- 370 (608)
++..++..++.++...|..++|+..++++.. .|+. . .. .
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988888876543 1111 0 00 0
Q ss_pred ---------HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048 371 ---------KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441 (608)
Q Consensus 371 ---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 441 (608)
....+.+.....+...+++++|+..|++++...+.........+|.+|...|++++|+..|++++...|..
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 00111111122345678999999999999988654444455557999999999999999999999877653
Q ss_pred cccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHH
Q 040048 442 TTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA---KGVAAARSNGNALFKQAKFSEAA 518 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~---~~~~~~~~lg~~~~~~g~~~eA~ 518 (608)
.. ........++.++...|++++|+..++++....|.....+...... .....+..+|.++...|++++|+
T Consensus 306 ~~------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 306 AD------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred CC------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 11 0135667778888999999999999999999887532211000000 00122347899999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
..+++++...|.+..++..+|.++...|++++|++.+++++.++|++..+++.+|.++...|++++|+..++++++..|+
T Consensus 380 ~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 380 MRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHH
Q 040048 599 DEEVDQ 604 (608)
Q Consensus 599 ~~~~~~ 604 (608)
++.+..
T Consensus 460 ~~~~~~ 465 (765)
T PRK10049 460 DPGVQR 465 (765)
T ss_pred CHHHHH
Confidence 998764
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.8e-26 Score=231.43 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=273.5
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDY--KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 265 ~~~~~lg~~~~--~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+.+..+|..+. .+-+..+|+..|.+.-...++-..++..+|.+|+.+++|++|..+|+.+-++.|-..+..-.+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44555555554 4566789999999977778888888999999999999999999999999999998777766677777
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
+.+.+--+--...+..+. .+|+. .+.|-..|.++.-+++++.|++.+++++.++|.+ ..+|.++|.-+....
T Consensus 398 WHLq~~v~Ls~Laq~Li~-~~~~s------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDEVALSYLAQDLID-TDPNS------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATE 469 (638)
T ss_pred HHHHhhHHHHHHHHHHHh-hCCCC------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhH
Confidence 777654333333444555 77776 6788888999999999999999999999999987 478999999999999
Q ss_pred ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048 423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR 502 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 502 (608)
++|.|..+|+.++..+|.+ ..+|+.+|.+|.++++++.|.-+|++|++++|.+.....
T Consensus 470 e~d~a~~~fr~Al~~~~rh----------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~------------ 527 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH----------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC------------ 527 (638)
T ss_pred HHHhHHHHHHhhhcCCchh----------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh------------
Confidence 9999999999999999985 889999999999999999999999999999999988876
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 582 (608)
.+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 040048 583 EASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 583 ~~A~~~~~~al~l~P~~~~~~ 603 (608)
+.|+..|--|++++|.-.++.
T Consensus 608 ~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred hHHHHhhHHHhcCCCccchhh
Confidence 999999999999999866543
No 15
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-25 Score=221.59 Aligned_cols=335 Identities=22% Similarity=0.353 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
-+...|+..+..|+|+.|+.+|..+|.++|.+...|.++..+|..+|+|++|+..-.+.++++|+.+.+|..+|..+..+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHH-----------------------------------------------------
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKS----------------------------------------------------- 372 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~----------------------------------------------------- 372 (608)
|+|++|+..|.+.|+ .+|++......
T Consensus 84 g~~~eA~~ay~~GL~-~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLE-KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhh-cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999999999998 88776321110
Q ss_pred -------------------------------------------------------------HHHHHHHhHHHHHhhcHHH
Q 040048 373 -------------------------------------------------------------LQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 373 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 391 (608)
......+|.......++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0111122333344456666
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHH
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA 471 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (608)
++..|..+++++ .....+...+-+|+..|.+.+.+.....+++...+....+. -.+..+..+|..|...++++.|
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k---lIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK---LIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH---HHHHHHHHhhhhhhhHHhHHHH
Confidence 677777777666 22355666677777777777766666655544322111000 0144555677788899999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048 472 LAAIQKAAKQDSNNKEVNMVMRKA---------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC 536 (608)
Q Consensus 472 ~~~~~~al~~~p~~~~~~~~l~~~---------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 536 (608)
+.+|++++..... ++....+... ..+......|..++..|+|..|+..|.++|..+|+++.+|.
T Consensus 318 i~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred HHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 9999999986655 2222211111 11344567799999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
++|.||.++|.+..|+..++++++++|++..+|++.|.++..+.+|++|.+.|+++++++|++.++...+.
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR 467 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=3.8e-24 Score=241.60 Aligned_cols=332 Identities=12% Similarity=0.075 Sum_probs=268.0
Q ss_pred chhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 250 EPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 250 ~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
++...+.... .+..+.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++.
T Consensus 33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~ 112 (765)
T PRK10049 33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555543 46778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh---------------------
Q 040048 328 EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT--------------------- 386 (608)
Q Consensus 328 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~--------------------- 386 (608)
.|++.. +..+|.++...|++++|+..|++++. ..|++...... ++..+...
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~-~~P~~~~~~~~------la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALP-RAPQTQQYPTE------YVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHH------HHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 999999 99999999999999999999999999 99988543222 22221111
Q ss_pred ----------------------hcH---HHHHHHHHHHHHc---CCCChHH---HHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048 387 ----------------------RDW---NTLIQETRAAIAG---GADSAPQ---IYALQAEALLKLHKHQEADETLKNGP 435 (608)
Q Consensus 387 ----------------------~~~---~~A~~~~~~al~~---~~~~~~~---~~~~la~~~~~~g~~~eA~~~l~~al 435 (608)
+.+ ++|+..++.++.. +|+..+. +.......+...|++++|+..|++++
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 123 5677777777754 3333221 22221234567899999999999999
Q ss_pred CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515 (608)
Q Consensus 436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~ 515 (608)
+..+... ..+...+|.+|+..|++++|+.+|++++..+|.+..... .....++.++...|+++
T Consensus 265 ~~~~~~P---------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~--------~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 265 AEGQIIP---------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD--------EELADLFYSLLESENYP 327 (765)
T ss_pred ccCCCCC---------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh--------HHHHHHHHHHHhcccHH
Confidence 8754321 234444699999999999999999999998877621100 01126777889999999
Q ss_pred HHHHHHHHhhcCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 516 EAAAAYGDGLGLDPY---------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 516 eA~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
+|+..++++....|. ...++..+|.++...|++++|++.+++++...|++..+++.+|.++...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 999999999988762 24577889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 581 KWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
++++|++.++++++++|++..++..+
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 99999999999999999997765543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.7e-24 Score=226.07 Aligned_cols=303 Identities=16% Similarity=0.078 Sum_probs=261.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRL 338 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~l 338 (608)
.....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345677789999999999999999999999999999999999999999999999999999998854332 3578899
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHH
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----PQIYALQ 414 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~l 414 (608)
|.+|...|++++|+..|++++. ..|.+ ...+..++.++...|++++|+..+++++...|... ...+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~-~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVD-EGDFA------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHc-CCcch------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999999999988 66655 56778889999999999999999999998877642 2356678
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
|.++...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..|++++..+|.+....
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----- 251 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC----------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV----- 251 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH-----
Confidence 999999999999999999999988874 77889999999999999999999999999888753321
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
+..++.++...|++++|+..+++++...|+... +..+|.++...|++++|+..|+++++..|++......++.
T Consensus 252 ------~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 252 ------LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 237889999999999999999999999998754 4889999999999999999999999999998766545544
Q ss_pred HHHH--cCCHHHHHHHHHHHHH
Q 040048 575 CFAK--IEKWEASMQDYEILKK 594 (608)
Q Consensus 575 ~~~~--~g~~~~A~~~~~~al~ 594 (608)
.+.. .|+.++|+..+++.++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 4422 4588888888887764
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.1e-25 Score=216.62 Aligned_cols=336 Identities=16% Similarity=0.173 Sum_probs=286.9
Q ss_pred ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK 297 (608)
Q Consensus 220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 297 (608)
+.||=+.+. |++|+.+|..++.+.+. .|-.|.+++-||...|+|++-++...++++++|+.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~-----------------epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y 182 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPD-----------------EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY 182 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCC-----------------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence 344433333 78888888766666543 37788899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHH------------------HHHhh--------------------------------
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECR------------------EAIRI-------------------------------- 327 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~------------------~al~~-------------------------------- 327 (608)
..+++.++.++..+|++.+|+.... +.|..
T Consensus 183 ~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 183 VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 9999999999999999888775432 11110
Q ss_pred -CC-------------------------------------------------CC---------HHHHHHHHHHHHHcCCH
Q 040048 328 -EP-------------------------------------------------HY---------HRAHHRLANLYLRLGEV 348 (608)
Q Consensus 328 -~p-------------------------------------------------~~---------~~~~~~la~~~~~~g~~ 348 (608)
+| .+ +.++...|..++..|++
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 00 00 23455667777788999
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD 428 (608)
Q Consensus 349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~ 428 (608)
..|...|..+|. ++|.. ...|+.++..|....+-.+....|.++..++|.+ +.+|+.+|.+++-++++++|+
T Consensus 343 ~~a~~d~~~~I~-l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 343 LGAQEDFDAAIK-LDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-PDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhhhhHHHHHh-cCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-CchhHhHHHHHHHHHHHHHHH
Confidence 999999999999 88887 4458899999999999999999999999999998 578999999999999999999
Q ss_pred HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508 (608)
Q Consensus 429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~ 508 (608)
..|++++.++|++ +..+..++.+.++++++++++..|+++.+..|+.++++. ..|.++
T Consensus 415 aDF~Kai~L~pe~----------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~------------~fAeiL 472 (606)
T KOG0547|consen 415 ADFQKAISLDPEN----------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN------------LFAEIL 472 (606)
T ss_pred HHHHHHhhcChhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH------------HHHHHH
Confidence 9999999999985 889999999999999999999999999999999999987 779999
Q ss_pred HHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACRSK-LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
..+++|++|++.|.+++++.|. ++..+.+.|.+..+ .+++..|+..+++|++++|....++..||.+..++|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 66666666655443 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHH
Q 040048 582 WEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~~ 602 (608)
.++|+++|+++..+.-.-.+.
T Consensus 553 i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999876554443
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.8e-23 Score=236.45 Aligned_cols=311 Identities=13% Similarity=0.061 Sum_probs=263.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC------------------------
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGR------------------------ 313 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~------------------------ 313 (608)
|.+++.+..++......|++++|..+|++++...++. ......++.+|...+.
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 6799999999999999999999999999999863332 2234477777766544
Q ss_pred -H---HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048 314 -L---LEAVFECREAIRIEPH--YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR 387 (608)
Q Consensus 314 -~---~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (608)
+ ..+...+.+++...|. ++.+|+.+|.++.. +++++|+..|.+++. ..|++. ..+.++..+...|
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~-~~Pd~~-------~~L~lA~al~~~G 523 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ-RQPDAW-------QHRAVAYQAYQVE 523 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH-hCCchH-------HHHHHHHHHHHCC
Confidence 2 2234455566666777 89999999999987 899999999999988 777642 3666677778899
Q ss_pred cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048 388 DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467 (608)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (608)
++++|+..+++++...|.. ..+..+|.++...|++++|+.+|+++++..|+. ...+..++......|+
T Consensus 524 r~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~----------~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 524 DYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD----------NALYWWLHAQRYIPGQ 591 (987)
T ss_pred CHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHhCCC
Confidence 9999999999988775554 346788999999999999999999999988874 5556666666677799
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 547 (608)
+++|+..|+++++.+|+ ...+. .+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|+
T Consensus 592 ~~eAl~~~~~AL~l~P~-~~a~~------------~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 592 PELALNDLTRSLNIAPS-ANAYV------------ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999996 66554 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 548 FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 548 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+++|+..|++++++.|+++.+++++|.++..+|++++|+.+|+++++++|++..+...
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~ 716 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPL 716 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhh
Confidence 9999999999999999999999999999999999999999999999999999877643
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.1e-23 Score=238.27 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 281 AEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 281 ~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 358 (608)
..+...+.+++...|. ++.+|+.+|.|+.. +++.+|+..+.+++...|++. .+..+|.++...|++++|+..|+++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666677777788 89999999999987 899999999999999999864 4667788888999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCC
Q 040048 359 GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD 438 (608)
Q Consensus 359 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 438 (608)
+. ..|.+ ..++.++..+...|+++.|+..+++++...|+.. ..+..++..+...|++++|+..|+++++.+
T Consensus 536 ~~-~~p~~-------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 536 SL-HDMSN-------EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred hc-cCCCc-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 76 55544 2356778899999999999999999999988773 455556666667799999999999999999
Q ss_pred CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAA 518 (608)
Q Consensus 439 p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~ 518 (608)
|+ ..++..+|.++...|++++|+..|++++.++|++..++. .+|.++...|++++|+
T Consensus 607 P~-----------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~------------nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 607 PS-----------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA------------ALGYALWDSGDIAQSR 663 (987)
T ss_pred CC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCCHHHHH
Confidence 95 788999999999999999999999999999999998876 8999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
..|+++++.+|+++.+++++|.++..+|++++|+.+|++++++.|+...+....|.+.....+++.|.+.|.++..++|+
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CH
Q 040048 599 DE 600 (608)
Q Consensus 599 ~~ 600 (608)
..
T Consensus 744 ~~ 745 (987)
T PRK09782 744 SS 745 (987)
T ss_pred ch
Confidence 65
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.9e-24 Score=219.38 Aligned_cols=276 Identities=17% Similarity=0.173 Sum_probs=260.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.-...+..+|..|+..++|++|..+|+.+-+..|-.....-.+..+++.+.+--+--...+..+..+|+.++.|..+|+|
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 44578889999999999999999999999999999888888888889988887776777788889999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|..+++++.|+++|++++. ++|.. ..+|..+|..+....+++.|...|++++..+|.+ -.+|+-+|.+|.++
T Consensus 431 fSLQkdh~~Aik~f~RAiQ-ldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh-YnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQ-LDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH-YNAWYGLGTVYLKQ 502 (638)
T ss_pred hhhhhHHHHHHHHHHHhhc-cCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-hHHHHhhhhheecc
Confidence 9999999999999999999 99988 7899999999999999999999999999999988 47899999999999
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
++++.|+-.|++|++++|.+ ..+...+|.++.+.|+.++|+.+|++|+.++|.++-..+
T Consensus 503 ek~e~Ae~~fqkA~~INP~n----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~----------- 561 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSN----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY----------- 561 (638)
T ss_pred chhhHHHHHHHhhhcCCccc----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH-----------
Confidence 99999999999999999985 888999999999999999999999999999999998876
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
..|.+++..+++++|+..+++.-++-|++..+++.+|.+|.++|+.+.|+..|.-|+.++|.-..
T Consensus 562 -~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 -HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 89999999999999999999999999999999999999999999999999999999999998554
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=6.6e-23 Score=215.48 Aligned_cols=284 Identities=20% Similarity=0.132 Sum_probs=248.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. ..+... ......+.
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~--~~~~~~~~ 111 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTR--EQRLLALQ 111 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCH--HHHHHHHH
Confidence 455677899999999999999999999999999999999999999999999999999999886 332221 12345778
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
.++..+...|++++|+..+.++++..|.. ..++..++.++...|++++|+..++++++..|...... ....+..
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~~ 185 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-----IAHFYCE 185 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----HHHHHHH
Confidence 89999999999999999999999987765 57888999999999999999999999988776532110 1345678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLC 536 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~ 536 (608)
+|.++...|++++|+..|+++++..|+....+. .+|.++...|++++|+..|++++..+|.+ ..++.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASI------------LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 999999999999999999999999998877665 88999999999999999999999988876 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
.++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..|+++++.+|++..+.
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 9999999999999999999999999998754 48999999999999999999999999999988665
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-22 Score=198.04 Aligned_cols=323 Identities=15% Similarity=0.107 Sum_probs=272.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-----------------------------HHHHc
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA-----------------------------ALIAL 311 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~ 311 (608)
..|+-.++..|.++...|....|+..|..++...|-+..+|..|+. ++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999988888777655444 34445
Q ss_pred CCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHH-HH---H--------
Q 040048 312 GRLLEAVFECREAIRI-EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQA-HL---N-------- 378 (608)
Q Consensus 312 g~~~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~-~~---~-------- 378 (608)
.+.++++.-++..+.. .|.....-...|.+.....++++|+..|+...+ .+|-.....+...- ++ .
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k-nDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK-NDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-cCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 5677888888887777 788888888999999999999999999999998 67765433222110 00 0
Q ss_pred ----------------HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccc
Q 040048 379 ----------------KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET 442 (608)
Q Consensus 379 ----------------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 442 (608)
.|.-|.-.++.++|+.+|+++++++|... .+|.++|.-|..+++...|++.|+++++++|.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D- 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD- 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-
Confidence 12224556788999999999999999874 789999999999999999999999999999987
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG 522 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 522 (608)
..+|+.+|+.|..++.+.=|+-+|++|++.-|.+...|. .+|.+|.+.++.++|+++|.
T Consensus 398 ---------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~------------aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 398 ---------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV------------ALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred ---------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH------------HHHHHHHHhccHHHHHHHHH
Confidence 788888999999999999999999999999999999987 88999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+++.....+..++..||.+|.+++++.+|..+|++.++ ..|....+...||.-+.+.+++++|..+...++.-
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 99999888889999999999999999999999999988 34556777888999999999999999999999888
Q ss_pred CCCCHHHHHHhh
Q 040048 596 APDDEEVDQALQ 607 (608)
Q Consensus 596 ~P~~~~~~~~L~ 607 (608)
++.-.++...|+
T Consensus 537 ~~e~eeak~LlR 548 (559)
T KOG1155|consen 537 ETECEEAKALLR 548 (559)
T ss_pred CchHHHHHHHHH
Confidence 887777766654
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=209.47 Aligned_cols=413 Identities=19% Similarity=0.193 Sum_probs=325.0
Q ss_pred chhhhhhhhhccccccCCCcceeccccchhhhcccccccCCCCCCCCCCCCCcccccccccccCccCCCCCCCCc-----
Q 040048 145 ISGELESMIADHQKTRGSSNLVRASSSNMMLFGNLGNIRQGGGGGNVNPYNHVNESSGVRGNNNTNKNNNRYPNS----- 219 (608)
Q Consensus 145 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~a----- 219 (608)
.+|.-++.+..|....|...|+...+.+.++|+ |+.....+ .+ + .-|.+- ++.+..+.-|+++
T Consensus 174 dagrker~lvk~req~~~~e~inldltfsvl~n-laqqy~~n---dm--~-----~ealnt-yeiivknkmf~nag~lkm 241 (840)
T KOG2003|consen 174 DAGRKERALVKHREQQGLPEMINLDLTFSVLFN-LAQQYEAN---DM--T-----AEALNT-YEIIVKNKMFPNAGILKM 241 (840)
T ss_pred hcchhHHHHHHHHHhccchhhccccchHHHHHH-HHHHhhhh---HH--H-----HHHhhh-hhhhhcccccCCCceeee
Confidence 456667777788888888888877766665554 44433222 22 0 112222 3567778888887
Q ss_pred ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK 297 (608)
Q Consensus 220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 297 (608)
++|+|+.++ +..|..+|++++..-|.-. ......++.++|..+.+.|.|+.|+..|+.+++..|+.
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsin------------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~ 309 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN------------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF 309 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccc------------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH
Confidence 999999888 8899999999988876522 23445678888999999999999999999999999986
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCC--------------------------------
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRI--------------EPHY-------------------------------- 331 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------------~p~~-------------------------------- 331 (608)
.. -+++..|++..|+-++-.+.|.+.+.+ +|++
T Consensus 310 ~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 310 IA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred Hh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 54 457778888888888888888888764 1111
Q ss_pred ----------H--------------------HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHH-HHH---------
Q 040048 332 ----------H--------------------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA-KAK--------- 371 (608)
Q Consensus 332 ----------~--------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~-~~~--------- 371 (608)
+ +.-...+.-|++.|+++.|++.++-.-. .+..... ...
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhhhhHHHHHHh
Confidence 0 0012335678999999999988765433 2221110 000
Q ss_pred ---------------------HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 372 ---------------------SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 372 ---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
...++.+.+.+....|++++|.+.|++++..+... .++++++|..+..+|+.++|+++
T Consensus 468 ggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred cccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHH
Confidence 01223344555566799999999999999877665 47888899999999999999999
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~ 510 (608)
|-+.-.+-.+ ++++++.++.+|..+.+..+|++++.++..+-|+++.++. .+|.+|-+
T Consensus 547 f~klh~il~n----------n~evl~qianiye~led~aqaie~~~q~~slip~dp~ils------------kl~dlydq 604 (840)
T KOG2003|consen 547 FLKLHAILLN----------NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS------------KLADLYDQ 604 (840)
T ss_pred HHHHHHHHHh----------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH------------HHHHHhhc
Confidence 9876544333 4899999999999999999999999999999999999886 89999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 590 (608)
.|+-.+|.+++-......|-+.+...+||..|....-+++|+.+|+++--+.|+.....+.++.|+.+.|+|.+|.+.|+
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHh
Q 040048 591 ILKKEAPDDEEVDQAL 606 (608)
Q Consensus 591 ~al~l~P~~~~~~~~L 606 (608)
...+..|.+.+..+.|
T Consensus 685 ~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 685 DIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHhCccchHHHHHH
Confidence 9999999999987765
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.2e-23 Score=221.09 Aligned_cols=330 Identities=14% Similarity=0.081 Sum_probs=284.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG---RLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
-++....+|.|+.+.|+.+.|+..|.++++++|.++.++..||.+-.... .+..++..+.++...++.+|.++..|+
T Consensus 198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LA 277 (1018)
T KOG2002|consen 198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLA 277 (1018)
T ss_pred CCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 35566677888888888889999999999999988888888887766644 467788888888888999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
.-|+..|+|+.+......++. .. .........++.+|..+..+|++++|..+|.+++..++++..-.++.+|..+.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~-~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIK-NT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHH-hh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 999999999999998888875 22 23344567899999999999999999999999999999886677888999999
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG----RFEDALAAIQKAAKQDSNNKEVNMVMRKA 495 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 495 (608)
..|+++.|+.+|++.++..|+. .+....+|.+|...+ ..++|..++.++++..|.+.++|..+..+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~----------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNN----------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcch----------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999999999999999985 888899999998876 67899999999999999999988877654
Q ss_pred HH--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC-----HHHHHHHH
Q 040048 496 KG--------------------------VAAARSNGNALFKQAKFSEAAAAYGDGLGL-----DPYN-----SVLLCNRA 539 (608)
Q Consensus 496 ~~--------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~-----~~~~~~la 539 (608)
.. ++.++++|..++..|++.+|...|.+|+.. +++. ...-+++|
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 21 556789999999999999999999999876 2222 33589999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 540 ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.++..+++++.|.+.|..+++..|.+.++|.++|......++..+|...+..++..+..|++++..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 9999999999999999999999999999999999888888999999999999999999999998765
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.7e-23 Score=218.57 Aligned_cols=327 Identities=18% Similarity=0.209 Sum_probs=206.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
.-++.+|.+|.++..+|+|++|..+|.+++..+|++ .-.++.+|.+|+..|+++.|+.+|+++++..|++.+....||.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 345667778888888888888888888888877777 5567777888888888888888888888888888777777887
Q ss_pred HHHHcC----CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----CCCChHHHHH
Q 040048 341 LYLRLG----EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----GADSAPQIYA 412 (608)
Q Consensus 341 ~~~~~g----~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~ 412 (608)
+|...+ ..++|..+..+++. ..|.+ ..+|+.++.++....-|.. +..|..++.. .....+++++
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~-~~~~d------~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLE-QTPVD------SEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHh-ccccc------HHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777765 55677777777776 55555 3344444444333333332 4444443321 1113344444
Q ss_pred HHHHHHHHcCChHHHHHHh--------------------------------------------hcCCCCCCcccccccCC
Q 040048 413 LQAEALLKLHKHQEADETL--------------------------------------------KNGPNFDVDETTRFFGP 448 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l--------------------------------------------~~al~~~p~~~~~~~~~ 448 (608)
++|..++.+|++.+|...| ..+++..|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-------- 528 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-------- 528 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--------
Confidence 5555555555555555544 444444443
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH------------------------HHHHHHHH
Q 040048 449 IGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK------------------------GVAAARSN 504 (608)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------------------------~~~~~~~l 504 (608)
....+..+|.+....+...+|..++..++..+..++.++..++... .+-++..|
T Consensus 529 --YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 529 --YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred --hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 2555555555555556666666666666666666666665554210 02234567
Q ss_pred HHHHHH------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 505 GNALFK------------QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 505 g~~~~~------------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
|++++. .+.+++|+++|.++|..+|.+..+-..+|.|+...|++.+|+..|.++.+-..++.++|.++
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 776653 45678899999999999998877777777777777777777777777766655666677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHh
Q 040048 573 ADCFAKIEKWEASMQDYEILKKEAP--DDEEVDQAL 606 (608)
Q Consensus 573 a~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~L 606 (608)
|.||..+|+|..|++.|+.+++..- ++.++...|
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 7777777777777777777766432 344444433
No 27
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-24 Score=206.73 Aligned_cols=307 Identities=29% Similarity=0.425 Sum_probs=270.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+++-....|..++...+|.+|+..|..||+++|+++..|.+.+.++...|+|++|+-.+++.++++|.....+...+.|+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS--APQIYALQAEALLK 420 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~la~~~~~ 420 (608)
..+++..+|...++..- + .....++..+++.+...... -..+..+.+.++..
T Consensus 128 ~a~~~~i~A~~~~~~~~----~----------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~ 181 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ----A----------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF 181 (486)
T ss_pred hhhHHHHHHHHHhhhhh----h----------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence 99999999988876321 1 01223334444444333221 13456667899999
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.+++++|...--..+++++.. .++++..|.++...++.+.|+.+|++++.++|++.........++.++.
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n----------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN----------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred cccchhHHHHHHHHHhcccch----------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHH
Confidence 999999999999999998874 8999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+...|+-.++.|+|.+|.++|..+|.++|++ +.+|.++|.+...+|+..+|+..++.++.+++....++...|.|+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 678999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 577 AKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
..+++|++|++.|+++++...+ .++++.|
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 9999999999999999998877 5554444
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=3.2e-22 Score=211.14 Aligned_cols=320 Identities=18% Similarity=0.209 Sum_probs=269.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
....++..|+.++..|++++|..++.++|..+|.++.+|+.+|.+|..+|+.++++..+-.|-.++|.+.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----PQIYALQAEAL 418 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~la~~~ 418 (608)
..+|++.+|.-+|.++++ .+|.+ ....+.++.++.++|+...|...+.+++...|... ...-...+..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~-~~p~n------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQ-ANPSN------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHh-cCCcc------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999 99988 78888999999999999999999999999988432 23344457778
Q ss_pred HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh----------
Q 040048 419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNK---------- 486 (608)
Q Consensus 419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~---------- 486 (608)
...++.+.|++.++.++....+. . ....+..++.+++....++.|......-.. ..+++.
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~----~----~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDE----A----SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhcccc----c----cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 88888899999999998833221 1 145566788999999999999887765544 111111
Q ss_pred ----------------HH-HHHHHH-----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 487 ----------------EV-NMVMRK-----------------------AKGVAAARSNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 487 ----------------~~-~~~l~~-----------------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
.+ ...+.. ......+..++.++...|++.+|+.+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 01 100000 01255678999999999999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 527 LDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 527 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
..+ .+..+|+.+|.||..+|.+++|+++|++++.+.|++.++...|+.++.++|+.++|.+.++....-++
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 866 44789999999999999999999999999999999999999999999999999999999998774443
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-21 Score=196.02 Aligned_cols=282 Identities=15% Similarity=0.147 Sum_probs=239.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
..+++.+...+..++..++|.+-.+.++..++.+|-+...+-..-.|+..+|+..+=...-.+.++..|+.+..|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 35678888999999999999999999999999999988876665559999999999888888999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
.|...|++.+|..+|.++.. ++|.. ...|...|..+..
T Consensus 321 YYl~i~k~seARry~SKat~-lD~~f-----------------------------------------gpaWl~fghsfa~ 358 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT-LDPTF-----------------------------------------GPAWLAFGHSFAG 358 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh-cCccc-----------------------------------------cHHHHHHhHHhhh
Confidence 99999999999999999988 88876 3567777888888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.+..++|+.+|..+-++.|.. ....+.+|.-|...++++.|..+|.+|+.+.|.++-+..
T Consensus 359 e~EhdQAmaaY~tAarl~~G~----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~---------- 418 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGC----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH---------- 418 (611)
T ss_pred cchHHHHHHHHHHHHHhccCC----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh----------
Confidence 888888888888887777654 455566888888889999999999999999998888776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLD----P---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
.+|.+.+..+.|.+|..+|+.++..- + .-...+.+||.++.+++.+++|+.+|+++|.+.|.++.++..+|
T Consensus 419 --Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 419 --ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred --hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 78888888889999999998888431 1 12356788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 574 DCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.+|..+|+++.|+++|.+++-+.|+|.-+...|
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999999886665544
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.2e-19 Score=201.61 Aligned_cols=342 Identities=15% Similarity=0.071 Sum_probs=264.3
Q ss_pred CcchhHHHHhhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 248 SAEPTSLCRALSTRMD--PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAI 325 (608)
Q Consensus 248 ~~~a~~~~~~~~~~~~--~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 325 (608)
..+|...++....+.+ ...+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 3345555555554433 44455557799999999999999999999999999999988999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH---------------------------------
Q 040048 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS--------------------------------- 372 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~--------------------------------- 372 (608)
..+|..... ..++.++...++..+|+..|++++. .+|++......
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~-~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR-LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 999985554 5566666667788779999999988 77776321100
Q ss_pred --------------------------------------------------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 373 --------------------------------------------------LQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 373 --------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
..+.......+...+++.+++..|+.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 001111112233345566666666665554
Q ss_pred CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD 482 (608)
Q Consensus 403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (608)
.......+....|..|+..++.++|+.+|+.++...++. +...........|...|+..+++++|..++++..+..
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~----~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT----FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc----cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 444445677788999999999999999999987765421 0000123445678888999999999999999998855
Q ss_pred CC------------ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 483 SN------------NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 483 p~------------~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
|- +++. .+....++.++...|++.+|++.+++.+...|.+..++..+|.++...|.+.+
T Consensus 398 p~~~~~~~~~~~~pn~d~---------~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDW---------IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred CcEEeccCCCCCCCCccH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 51 1111 12335788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
|+..++.++.++|++..+...+|.++..+|++.+|....+++++..|+++.+.+
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999999999999999999999999999999999999999999998765
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=5.4e-23 Score=205.61 Aligned_cols=265 Identities=20% Similarity=0.222 Sum_probs=115.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISI--DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
.+.+|.+++..|++++|++++++.+.. .|+++.+|..+|.+...++++++|+..|++++..++..+..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 346799999999999999999766544 488899999999999999999999999999999998888888888888 78
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
.+++++|+..++++.+ ..++ +..+.....++...+++
T Consensus 90 ~~~~~~A~~~~~~~~~-~~~~------------------------------------------~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYE-RDGD------------------------------------------PRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccc-cccc------------------------------------------cchhhHHHHHHHHHhHH
Confidence 8999999998887765 2221 23334445556666777
Q ss_pred HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048 425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504 (608)
Q Consensus 425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l 504 (608)
+++...++++....+.. .++..|..+|.++...|++++|+..|+++++.+|++..+.. .+
T Consensus 127 ~~~~~~l~~~~~~~~~~--------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l 186 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAP--------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------AL 186 (280)
T ss_dssp HHHHHHHHHHHH-T-----------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HH
T ss_pred HHHHHHHHHHHhccCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HH
Confidence 77777666644322100 13888999999999999999999999999999999999876 78
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 584 (608)
+.++...|+++++...+.......|.++.++..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999988888888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040048 585 SMQDYEILKKE 595 (608)
Q Consensus 585 A~~~~~~al~l 595 (608)
|..+++++++.
T Consensus 267 A~~~~~~~~~~ 277 (280)
T PF13429_consen 267 ALRLRRQALRL 277 (280)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99999998764
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-20 Score=184.89 Aligned_cols=272 Identities=16% Similarity=0.138 Sum_probs=230.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-----------------------------HHHcC
Q 040048 296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL-----------------------------YLRLG 346 (608)
Q Consensus 296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~~g 346 (608)
.++..++..|.++...|....|+..|..++...|-+-.+|..|+.+ +..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999888877777666543 33333
Q ss_pred CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh-------------------
Q 040048 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA------------------- 407 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------------- 407 (608)
+.++++.-++......-|.. ...-...+.+.....|+++|+..|+.+...+|-..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNS------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHhccCCcc------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 44455544444443112222 23334556677888999999999999999877321
Q ss_pred --------------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048 408 --------------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA 473 (608)
Q Consensus 408 --------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (608)
++....+|..|...+++++|+.+|+++++++|.. ..+|..+|.-|+.+++...|++
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~----------~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY----------LSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch----------hHHHHHhhHHHHHhcccHHHHH
Confidence 2223345777888899999999999999999985 8999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE 553 (608)
Q Consensus 474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 553 (608)
.|++|++++|.+..+|. .+|.+|.-++...=|+-+|++|+...|.+...|..||.||.++++.++|++
T Consensus 386 sYRrAvdi~p~DyRAWY------------GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWY------------GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHHHHhcCchhHHHHh------------hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 554 DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 554 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+|.+++........++..||.+|.++++..+|..+|++.++.
T Consensus 454 Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 454 CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999888999999999999999999999999999983
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=1.2e-19 Score=190.71 Aligned_cols=308 Identities=12% Similarity=0.014 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH-RAHHRLANLY 342 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~ 342 (608)
.......|...+..|+++.|...+.++.+..|+....+...|.++..+|++++|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445577888999999999999999999999999888888999999999999999999999999999875 5666679999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA---LQAEALL 419 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---~la~~~~ 419 (608)
...|++++|+..++++++ ..|++ ..++..++..+...|+|+.++..+.+..+........... .....+.
T Consensus 164 l~~~~~~~Al~~l~~l~~-~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLE-MAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999 88988 5778888999999999999999999999875554333322 2222224
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 499 (608)
..+..+++...+..+....|+... .+..++..++..+...|++++|+..++++++..|++.......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~------~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~------- 303 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRR------HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL------- 303 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHh------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH-------
Confidence 444455555566666665553100 1389999999999999999999999999999999987532100
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS--VLLCNRAACRSKLGQFEKAIEDCN--AALNVRPGYSKARLRRADC 575 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~la~~ 575 (608)
.........++.+.+++.++++++..|+++ .++..+|.++++.|++++|.++|+ .+++..|+... +..+|.+
T Consensus 304 ---l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l 379 (409)
T TIGR00540 304 ---CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADA 379 (409)
T ss_pred ---HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence 233444556889999999999999999999 889999999999999999999999 68888887765 5699999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 040048 576 FAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l 595 (608)
+.++|+.++|.++|++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=4.3e-20 Score=201.34 Aligned_cols=268 Identities=13% Similarity=0.057 Sum_probs=215.4
Q ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 040048 263 DPETLKIMGNEDYKA---GNFAEALALYDAAISIDPNKASYRSNKTAALIAL---------GRLLEAVFECREAIRIEPH 330 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~p~ 330 (608)
++..++..|..++.. +++++|+.+|+++++++|+++.+|..+|.++... +++++|+..++++++++|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 344566677655443 4578999999999999999999999999887744 3478999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI 410 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 410 (608)
++.++..+|.++...|++++|+..|++++. ++|++ +.+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P~~-----------------------------------------~~a 374 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANL-LSPIS-----------------------------------------ADI 374 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC-----------------------------------------HHH
Confidence 999999999999999999999999999988 77777 456
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD-SNNKEVN 489 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 489 (608)
+..+|.++...|++++|+..++++++++|.+ ...+..++.+++..|++++|+..+++++... |+++..+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~----------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTR----------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 7777888888888888888888888888874 4445556667778899999999999998875 6676665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
. .+|.++...|++++|+..+.++....|....++..++..|...| ++|...+++.++..-....-.
T Consensus 445 ~------------~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 445 S------------MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNP 510 (553)
T ss_pred H------------HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCc
Confidence 4 78999999999999999999998888888888889999988888 477777777666443333233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
..++.+|.-.|+.+.+..+ +++.+.+.
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 3478888888888888776 76665543
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=5.2e-19 Score=196.59 Aligned_cols=359 Identities=11% Similarity=0.005 Sum_probs=265.4
Q ss_pred CCCcccccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 040048 229 NDHPQNHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA 306 (608)
Q Consensus 229 ~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~ 306 (608)
+..+...|..++.....+....|...++.++. |.++.....+..++...|++++|+.++++++.-.|.....+..+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 44555667777777777777788888877754 5554344478888888899999999999998333333444444477
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh
Q 040048 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT 386 (608)
Q Consensus 307 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (608)
++..+|++++|++.|+++++.+|+++.++..++.+|...++.++|+..+++++. .+|... .+..++.++...
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-~dp~~~-------~~l~layL~~~~ 182 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE-RDPTVQ-------NYMTLSYLNRAT 182 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-cCcchH-------HHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988 787742 123345555556
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC-------------------------------
Q 040048 387 RDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP------------------------------- 435 (608)
Q Consensus 387 ~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al------------------------------- 435 (608)
++..+|+..++++++.+|++. .++..+..++...|-...|.+...+-.
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~-e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSE-EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 777779999999999999884 555555566665555544444443322
Q ss_pred -----------------C---CCCcccccccC-----------------------------CCCcHHHHHHHHHHHHHcC
Q 040048 436 -----------------N---FDVDETTRFFG-----------------------------PIGNANLLVVRAQVNLACG 466 (608)
Q Consensus 436 -----------------~---~~p~~~~~~~~-----------------------------~~~~~~~~~~la~~~~~~g 466 (608)
. ..|.....+.. ..--..+....|..|+..+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 2 11211000000 0001345556667777777
Q ss_pred CHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-------------
Q 040048 467 RFEDALAAIQKAAKQDSN----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------------- 529 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------------- 529 (608)
++++|+.+|+.++.-.+. ..+.. ....|..++...+++++|..++++..+..|
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 777777777777665431 11111 113677889999999999999999987433
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 530 --YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 530 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+...+...++.++...|++.+|++.+++.+...|.+...+..+|.++...|.+.+|+..++.+..++|++..+...+
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 33567888999999999999999999999999999999999999999999999999999999999999998877654
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=2.8e-20 Score=176.22 Aligned_cols=296 Identities=16% Similarity=0.176 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH--
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RAH-- 335 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~-- 335 (608)
|.+-.+++..|.+|+..|+-.-|+..+.++|++.|+...+...+|.+++.+|.+++|+..|+.++..+|.+. ++.
T Consensus 69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 455568899999999999999999999999999999999999999999999999999999999999999652 222
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 336 ----------HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 336 ----------~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
......++..|++..|++....+++ +.|-+ +..+..++.+|...|+...||..++.+-++..+
T Consensus 149 l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE-i~~Wd------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 149 LALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE-IQPWD------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred HHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh-cCcch------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 2233445567999999999999998 88876 677888999999999999999999999988777
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccc--cccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETT--RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
+. +.++.++.+++..|+.+.++...+++++++|+... .++.......-.+.-+......++|.++++..++.++.+|
T Consensus 222 nT-e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 222 NT-EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred ch-HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 74 78888999999999999999999999999998532 2221111122223334456678999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
....+... .+..+..|+...+++.+|++.+.+++.++|++..+++..|.+|+....|+.|+..|++|.+.++
T Consensus 301 ~~~~ir~~--------~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 301 EETMIRYN--------GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred cccceeee--------eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 86655431 2235778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHH
Q 040048 564 GYSKARLRR 572 (608)
Q Consensus 564 ~~~~a~~~l 572 (608)
++..+.-.+
T Consensus 373 sn~~~reGl 381 (504)
T KOG0624|consen 373 SNTRAREGL 381 (504)
T ss_pred ccHHHHHHH
Confidence 987766544
No 37
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.2e-19 Score=172.96 Aligned_cols=307 Identities=13% Similarity=0.028 Sum_probs=267.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 349 (608)
.|.++....-+.-+..++-+-...-|++...+..+|.|++..|++++|+..|+++..++|....+.-.+|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 44455455555666677777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHH
Q 040048 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE 429 (608)
Q Consensus 350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 429 (608)
.-.......+. ++... ..-|+--+......+++..|+...+++|..++.+. ..+.+.|.++..+++.++|+-
T Consensus 284 ~~~~L~~~Lf~-~~~~t------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 284 QDSALMDYLFA-KVKYT------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hHHHHHHHHHh-hhhcc------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHHH
Confidence 87777776655 33222 34556666777788999999999999999999885 678899999999999999999
Q ss_pred HhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH-HHH
Q 040048 430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG-NAL 508 (608)
Q Consensus 430 ~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg-~~~ 508 (608)
.|+.+..+.|.+ .+.|..+-..|...|++.+|....+.++..-|.+..... .+| .++
T Consensus 356 aFR~Aq~Lap~r----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt------------L~g~~V~ 413 (564)
T KOG1174|consen 356 AFRTAQMLAPYR----------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT------------LFGTLVL 413 (564)
T ss_pred HHHHHHhcchhh----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh------------hhcceee
Confidence 999999999975 788888999999999999999999999999999888765 444 333
Q ss_pred -HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 509 -FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 509 -~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
..-.--++|..++++++.+.|....+...+|.++...|.+++++..+++.+...|+. ..+..||+++...+.+++|.+
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence 333445889999999999999999999999999999999999999999999998875 578999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHhh
Q 040048 588 DYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 588 ~~~~al~l~P~~~~~~~~L~ 607 (608)
+|..|+.++|++....++|.
T Consensus 493 ~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 493 YYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHhcCccchHHHHHHH
Confidence 99999999999999888774
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=2.1e-18 Score=180.46 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNK-TAALIALGRLLEAVFECREAIRIEPHYHRA-HHRLANL 341 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~la~~ 341 (608)
....+..|...+..|+|++|...+.++-+..+. +..++.+ +.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 445677888888899999999888776665433 4444444 556689999999999999999998887543 3455899
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH-------HHH
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY-------ALQ 414 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------~~l 414 (608)
+...|++++|+..++++.+ ..|++ ...+..++..+...|+|++++..+.+..+....+....- ..+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~-~~P~~------~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLE-VAPRH------PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 88888 567777788889999999999999888887665443322 222
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
........+.+.....++......|++ +.+...++..+...|+.++|...++++++..+ ++....
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~----------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~---- 300 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQ----------VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVL---- 300 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHH----
Confidence 222223344455566666666555553 88999999999999999999999999999544 444322
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
. ......++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.
T Consensus 301 --------l--~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~ 369 (398)
T PRK10747 301 --------L--IPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLAD 369 (398)
T ss_pred --------H--HhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHH
Confidence 2 2333559999999999999999999999999999999999999999999999999999864 4678999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 040048 575 CFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al~l~ 596 (608)
++.++|+.++|.++|++++.+.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999998864
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=8.8e-19 Score=185.40 Aligned_cols=346 Identities=16% Similarity=0.158 Sum_probs=273.1
Q ss_pred ccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 040048 235 HYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG 312 (608)
Q Consensus 235 ~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 312 (608)
.+..+.-+...|..++|..++.++.. |.++.+|+.||.+|..+|+.++++.++-.|-.++|++...|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 33334444455667778888888754 7889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048 313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL 392 (608)
Q Consensus 313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 392 (608)
++.+|.-+|.+||+.+|.+....+..+.+|.++|+...|+..|.+++. +.|.. ............+..+...++-+.|
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LDPPV-DIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hCCch-hHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999 77722 1122233334446666777777899
Q ss_pred HHHHHHHHHcCCC-ChHHHHHHHHHHHHHcCChHHHHHHhhcCCC--CCCccccc------------cc-----------
Q 040048 393 IQETRAAIAGGAD-SAPQIYALQAEALLKLHKHQEADETLKNGPN--FDVDETTR------------FF----------- 446 (608)
Q Consensus 393 ~~~~~~al~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~------------~~----------- 446 (608)
++.++.++....+ .....+..++.+++....++.|......... ..+++... +.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 9999988874222 1234566788889999999888876644333 11111000 00
Q ss_pred -----------------------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048 447 -----------------------------GPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497 (608)
Q Consensus 447 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 497 (608)
.+......++.++..+...|++.+|+.+|..+....+......
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v-------- 451 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV-------- 451 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh--------
Confidence 0114578889999999999999999999999988766554221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---------SKA 568 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a 568 (608)
|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|++.++..+.-++.+ ...
T Consensus 452 ---w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 452 ---WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred ---hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 24999999999999999999999999999999999999999999999999999999877433222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
...+..++...|+.++=+..-...+
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6788999999999998555444443
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2.5e-19 Score=168.81 Aligned_cols=267 Identities=15% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC---C-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 273 EDYKAGNFAEALALYDAAISIDP---N-------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~p---~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+++...+...|-......++.+- . +...-..+|.||+++|.+.+|.+.++.+++..| .++.+..|+.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 45666777777666665555431 1 223345789999999999999999999998776 478899999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
.+..+.+.|+..|.+.++ ..|.+ ...+..++.++..++
T Consensus 267 ~ridQP~~AL~~~~~gld-~fP~~-----------------------------------------VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLD-SFPFD-----------------------------------------VTYLLGQARIHEAME 304 (478)
T ss_pred HHhccHHHHHHHHhhhhh-cCCch-----------------------------------------hhhhhhhHHHHHHHH
Confidence 999999999999999888 66666 245556678888888
Q ss_pred ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048 423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR 502 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 502 (608)
++++|.++|+.+++.+|.+ .++.-.+|.-|+.-++++-|+.+|++++++.-.+++.+.
T Consensus 305 ~~~~a~~lYk~vlk~~~~n----------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~------------ 362 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPIN----------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC------------ 362 (478)
T ss_pred hHHHHHHHHHHHHhcCCcc----------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh------------
Confidence 8888888888888888764 666667888889999999999999999999999998876
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDP---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
++|.|++..++++-++..|++++.... .-+++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 899999999999999999999998643 33689999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 580 EKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
|+.++|..++..+-.+.|+-.++.-
T Consensus 443 G~i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred CchHHHHHHHHHhhhhCcccccccc
Confidence 9999999999999999998666543
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=3e-19 Score=179.12 Aligned_cols=235 Identities=14% Similarity=0.040 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcC---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 279 NFAEALALYDAAISID---PN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYH 354 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 354 (608)
..+.++..+.++|... |. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445555555555422 22 2344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcC
Q 040048 355 FKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNG 434 (608)
Q Consensus 355 ~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~a 434 (608)
|+++++ ++|++ ..++..+|.++...|++++|+..|+++
T Consensus 121 ~~~Al~-l~P~~-----------------------------------------~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 121 FDSVLE-LDPTY-----------------------------------------NYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred HHHHHH-hCCCC-----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555 44444 223333444444444444444444444
Q ss_pred CCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048 435 PNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF 514 (608)
Q Consensus 435 l~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~ 514 (608)
++.+|++ +.. .....+....+++++|+..|.+++...+... | ..+.++...|++
T Consensus 159 l~~~P~~----------~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~-------------~~~~~~~~lg~~ 212 (296)
T PRK11189 159 YQDDPND----------PYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--W-------------GWNIVEFYLGKI 212 (296)
T ss_pred HHhCCCC----------HHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccc--c-------------HHHHHHHHccCC
Confidence 4444443 211 1111233456788888888877665433222 2 123444445554
Q ss_pred HHH--HHHHHH----hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Q 040048 515 SEA--AAAYGD----GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYSKARLRRADCFAKIEK 581 (608)
Q Consensus 515 ~eA--~~~~~~----al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~ 581 (608)
.++ +..+.+ .+++.|...++|+++|.++...|++++|+.+|+++++.+| ++.+..+.+..+....+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 332 333332 2344556678888888888888888888888888888886 666666666555544433
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=187.64 Aligned_cols=240 Identities=19% Similarity=0.205 Sum_probs=183.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE 347 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 347 (608)
+..|..+++.|+..+|.-+|+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHH
Q 040048 348 VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEA 427 (608)
Q Consensus 348 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA 427 (608)
-.+|+.++.+.+. ..|... +...+ +
T Consensus 369 q~~Al~~L~~Wi~-~~p~y~-------------------------------------------~l~~a------~----- 393 (579)
T KOG1125|consen 369 QNQALKMLDKWIR-NKPKYV-------------------------------------------HLVSA------G----- 393 (579)
T ss_pred HHHHHHHHHHHHH-hCccch-------------------------------------------hcccc------C-----
Confidence 9999999888876 333321 00000 0
Q ss_pred HHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHH
Q 040048 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS--NNKEVNMVMRKAKGVAAARSNG 505 (608)
Q Consensus 428 ~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~lg 505 (608)
....+.....+ .+.. .+..-.+.|..+....| .++++.. .||
T Consensus 394 -------~~~~~~~~~s~----~~~~-------------~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LG 437 (579)
T KOG1125|consen 394 -------ENEDFENTKSF----LDSS-------------HLAHIQELFLEAARQLPTKIDPDVQS------------GLG 437 (579)
T ss_pred -------ccccccCCcCC----CCHH-------------HHHHHHHHHHHHHHhCCCCCChhHHh------------hhH
Confidence 00000000000 0011 12233445555555666 4566654 778
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS 585 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 585 (608)
.+|...|+|++|+.+|+.||...|++..+|+.||..+..-.+.++|+..|.+|+++.|.+..++++||.+++.+|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCCC
Q 040048 586 MQDYEILKKEAPD 598 (608)
Q Consensus 586 ~~~~~~al~l~P~ 598 (608)
.++|-.||.+.+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887665
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=2.6e-17 Score=167.97 Aligned_cols=310 Identities=14% Similarity=0.066 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.|...+..--..|..++-..+|++++...|.....|.+.+.-+...|+...|...+..+++.+|++.+.|+.--.+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc
Confidence 33333333333444444444444444444444444455555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ 425 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~ 425 (608)
.+++.|...|.++.. ..+.. ..|+..+.....++..++|+..++++++..|+. ..+|..+|.++..+++.+
T Consensus 632 ~e~eraR~llakar~-~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 632 DELERARDLLAKARS-ISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQIEEQMENIE 702 (913)
T ss_pred ccHHHHHHHHHHHhc-cCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHHHHHHHHHH
Confidence 555555555555544 33332 345555555666778888888888888888876 477888888888888888
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG 505 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg 505 (608)
.|...|...++..|.. ..+|+.++.+-...|..-.|...++++.-.+|.+...|. ..-
T Consensus 703 ~aR~aY~~G~k~cP~~----------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl------------e~I 760 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNS----------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL------------ESI 760 (913)
T ss_pred HHHHHHHhccccCCCC----------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH------------HHH
Confidence 8888888888888864 778888888888888888888888888888888887775 556
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPY------------------------------NSVLLCNRAACRSKLGQFEKAIEDC 555 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~ 555 (608)
.+-.+.|..++|.....+|++..|. ++.++...|.++....++++|.++|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999998888888876554 4667888899999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 556 NAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 556 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.++++.+|++.++|..+-..+...|.-++-.+.|.++..-.|.+.+.|...
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 999999999999999999999999999999999999999999998888764
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-18 Score=174.97 Aligned_cols=359 Identities=14% Similarity=0.106 Sum_probs=239.2
Q ss_pred ccccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhh-hCCCCHHHHHHHHHHH
Q 040048 200 SSGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRAL-STRMDPETLKIMGNED 274 (608)
Q Consensus 200 ~~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~lg~~~ 274 (608)
.-|+..|.++|.++|...-- +....+... +++|.. ...+.+ +.|.=+..|..+|..+
T Consensus 19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~------------------da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALK------------------DATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHH------------------HHHHHHhcCCchhhHHHHhHHHH
Confidence 34788888999999873211 333333222 333332 111111 3466688999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC---------------------HHHHHHHHHHHHh---h---
Q 040048 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR---------------------LLEAVFECREAIR---I--- 327 (608)
Q Consensus 275 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---------------------~~eA~~~~~~al~---~--- 327 (608)
+-.|+|++|+..|.+.|+.+|++...+..++.++..... +--.-..|...++ .
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 999999999999999999999998888777776622200 0000001111100 0
Q ss_pred --------------------------------------CCCC---------------------HHHHHHHHHHHHHcCCH
Q 040048 328 --------------------------------------EPHY---------------------HRAHHRLANLYLRLGEV 348 (608)
Q Consensus 328 --------------------------------------~p~~---------------------~~~~~~la~~~~~~g~~ 348 (608)
.|.. ......+|...+...++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 1100 12345677777777788
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD 428 (608)
Q Consensus 349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~ 428 (608)
..|+.+|..++. ++.+-.........++.++......+..++|++.-........ ........+|..|...++++.|+
T Consensus 241 ~~a~q~y~~a~e-l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k-lIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 241 ETAIQHYAKALE-LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK-LIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHHh-HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH-HHHHHHHHhhhhhhhHHhHHHHH
Confidence 888888888877 6632223333344455555555555555555444333221100 01233334555666666666666
Q ss_pred HHhhcCCCCCCc--ccc---------------cccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 429 ETLKNGPNFDVD--ETT---------------RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 429 ~~l~~al~~~p~--~~~---------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
.+|.+++..... ... .+.++ ..+.-....|..++..|+|..|+.+|.++++.+|++...+.
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~p-e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs- 396 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINP-EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS- 396 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhCh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH-
Confidence 666665543322 000 00000 11444556799999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
++|.+|.++|.+..|+..++.+++++|+....|...|.++..+.+|++|++.|.++++.+|++.++.-.
T Consensus 397 -----------NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 397 -----------NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 040048 572 RADCFAKIEKWEASMQDYEI 591 (608)
Q Consensus 572 la~~~~~~g~~~~A~~~~~~ 591 (608)
+.+|+..+.......+.+++
T Consensus 466 ~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 466 YRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHhhcCCCHHHHHHh
Confidence 99998876544445555555
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=9.2e-18 Score=171.16 Aligned_cols=312 Identities=17% Similarity=0.052 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
-..|..-+..+.+.+-++-|+..|..+|+.+|.....|...+..-..-|..++-..++++++..-|.....|...+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
..|+...|...+.++++ ..|+. ...++....+......++.|...+.++....+. ..+|..-+.+...++.
T Consensus 596 ~agdv~~ar~il~~af~-~~pns------eeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFE-ANPNS------EEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANLERYLDN 666 (913)
T ss_pred hcCCcHHHHHHHHHHHH-hCCCc------HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHHHHHhhh
Confidence 99999999999999998 88887 677888888888899999999999999987766 4788888999999999
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
.++|+.+++++++..|+. ..+|+.+|+++..+++.+.|...|...++..|.....|. .
T Consensus 667 ~eeA~rllEe~lk~fp~f----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl------------l 724 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDF----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL------------L 724 (913)
T ss_pred HHHHHHHHHHHHHhCCch----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH------------H
Confidence 999999999999999986 899999999999999999999999999999999999987 7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------------
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------------------ 565 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------ 565 (608)
++.+-.+.|....|...++++.-.+|.+..+|.....+-.+.|+.+.|.....+||+-.|++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 88999999999999999999999999999999999999999999999999999998876654
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 566 ------------SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 566 ------------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+.+++..|.++....++++|.++|+++++++|++.++|-.+
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 45567789999999999999999999999999999988654
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=1.5e-18 Score=189.39 Aligned_cols=237 Identities=13% Similarity=0.038 Sum_probs=193.9
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 301 RSNKTAALIAL---GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 301 ~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
++..|..+... +.+++|+.+|+++++++|+++.+|..+|.+|...+.... ..
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-----------~~-------------- 315 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-----------FD-------------- 315 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-----------cc--------------
Confidence 45556544433 457899999999999999999999999998875533100 00
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
..+++.+|+..++++++.+|++ +.++..+|.++...|++++|+..|+++++++|++ +.+++.
T Consensus 316 -------~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~----------~~a~~~ 377 (553)
T PRK12370 316 -------KQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS----------ADIKYY 377 (553)
T ss_pred -------cchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------HHHHHH
Confidence 0133445555555555555555 4778889999999999999999999999999985 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLC 536 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 536 (608)
+|.++...|++++|+..++++++++|.+..... .++.+++..|++++|+..+++++... |+++.++.
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~------------~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~ 445 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRAAAGI------------TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS 445 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH------------HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH
Confidence 999999999999999999999999999876643 45566778999999999999999875 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
.+|.++..+|++++|+..+.+++...|....++..++.+|...|+ +|...++++++
T Consensus 446 ~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 446 MQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999885 77776776655
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=2.6e-18 Score=172.35 Aligned_cols=224 Identities=15% Similarity=0.011 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
+...|++++|+..|++++. .+|++.. ......+....
T Consensus 142 l~~~g~~~eA~~~~~~al~-~~P~~~~------------------------------------------~~~~~~l~~~~ 178 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ-DDPNDPY------------------------------------------RALWLYLAESK 178 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH-hCCCCHH------------------------------------------HHHHHHHHHcc
Confidence 9999999999999999998 8887731 00111223345
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
+++++|+..|.+.....+.+ .|. .+.++...|++.++ ..++.+.+......... ....++|
T Consensus 179 ~~~~~A~~~l~~~~~~~~~~------------~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-----~~~~ea~ 239 (296)
T PRK11189 179 LDPKQAKENLKQRYEKLDKE------------QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-----ERLCETY 239 (296)
T ss_pred CCHHHHHHHHHHHHhhCCcc------------ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-----HHHHHHH
Confidence 67788888886655432211 111 34555666766544 24444443222222211 0123345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 547 (608)
+.+|.++...|++++|+.+|++++..+| +..+..+.+..+....++
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999999997 556666666555544433
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=3.5e-20 Score=185.25 Aligned_cols=241 Identities=20% Similarity=0.201 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 040048 301 RSNKTAALIALGRLLEAVFECREAIR-I-EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN 378 (608)
Q Consensus 301 ~~~la~~~~~~g~~~eA~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~ 378 (608)
.+.+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...++++++|+..|++++. .++..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~~~~~------------ 77 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-SDKAN------------ 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc------------
Confidence 34668888888999999998866554 4 477888888888888888888888888888876 44443
Q ss_pred HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048 379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR 458 (608)
Q Consensus 379 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 458 (608)
+..+..++.+ ...+++++|+.+++++.+..++ +..+...
T Consensus 78 -----------------------------~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----------~~~l~~~ 116 (280)
T PF13429_consen 78 -----------------------------PQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-----------PRYLLSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------cccccccccc-cccccccccccccccccccccc-----------cchhhHH
Confidence 3344555555 6889999999999988876654 5667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQD--SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLC 536 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 536 (608)
..++...++++++...++++.... +.+..++. .+|.++.+.|++++|+.+|+++++.+|++..++.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~ 184 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL------------ALAEIYEQLGDPDKALRDYRKALELDPDDPDARN 184 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH------------HHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 888999999999999999987655 44555554 8899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
.++.++...|+++++.+.++......|+++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...+.
T Consensus 185 ~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 185 ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 99999999999999999999998888899999999999999999999999999999999999999887654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=1.9e-17 Score=174.09 Aligned_cols=304 Identities=17% Similarity=0.096 Sum_probs=235.5
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHH
Q 040048 234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-SYRSNKTAALIA 310 (608)
Q Consensus 234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~ 310 (608)
.....++.....+.+..|......... |.....+...|..+..+|++++|..+|.++.+..|+.. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 333444444455555555555554433 33455667789999999999999999999999999885 466667999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHH
Q 040048 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN 390 (608)
Q Consensus 311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (608)
.|++++|+..+++.++..|+++.++..++.++...|++++|++.+.+.++ ....+......+.. .........+..+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~--~a~~~~l~~~~~~ 242 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQ--KAEIGLLDEAMAD 242 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999886 32222111111111 1122223444555
Q ss_pred HHHHHHHHHHHcCCC---ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048 391 TLIQETRAAIAGGAD---SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467 (608)
Q Consensus 391 ~A~~~~~~al~~~~~---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (608)
.....+..+....|. ..+.++..++..+...|++++|+..++++++..|++.. ..............++
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~--------~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA--------ISLPLCLPIPRLKPED 314 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc--------chhHHHHHhhhcCCCC
Confidence 566677777777774 35789999999999999999999999999999998521 1111333344455688
Q ss_pred HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHH
Q 040048 468 FEDALAAIQKAAKQDSNNK--EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG--DGLGLDPYNSVLLCNRAACRS 543 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~--~al~~~p~~~~~~~~la~~~~ 543 (608)
.+.++..++++++..|+++ .... .+|.+++..|+|++|.++|+ .+++..|+... +..+|.++.
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~------------sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~ 381 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINR------------ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD 381 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHH------------HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence 9999999999999999999 5554 89999999999999999999 68888887655 669999999
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 040048 544 KLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 544 ~~g~~~~A~~~~~~al~~ 561 (608)
++|+.++|.++|++++..
T Consensus 382 ~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-17 Score=173.80 Aligned_cols=321 Identities=17% Similarity=0.117 Sum_probs=246.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc------------------------------
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL------------------------------ 311 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------------------------------ 311 (608)
.++.+|-.+...+...|+|+.+.++|++++...-...+.|+.++.+|...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 46667777777777778888888888777765444444444444444444
Q ss_pred -------CCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhCCCCCchhHH
Q 040048 312 -------GRLLEAVFECREAIRIEP-----HYHRAHHRLANLYLRL-----------GEVEKAIYHFKHAGPEADQVDIA 368 (608)
Q Consensus 312 -------g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~p~~~~ 368 (608)
+.+++++.+..+++.... -.+.++..+|.+|..+ ....+++..++++++ ++|.|
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-~d~~d-- 477 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-FDPTD-- 477 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-cCCCC--
Confidence 455555555555554210 1133455555555432 123456666667766 66666
Q ss_pred HHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC-
Q 040048 369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG- 447 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~- 447 (608)
..+.+.++..+...++...|.....++++.++.+....|..++.++...+++.+|+.+.+.++.-.|++..-...
T Consensus 478 ----p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 478 ----PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred ----chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 467778888899999999999999999999998889999999999999999999999887777665551100000
Q ss_pred --------------------------------------------------------------------------------
Q 040048 448 -------------------------------------------------------------------------------- 447 (608)
Q Consensus 448 -------------------------------------------------------------------------------- 447 (608)
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence
Q ss_pred C-----C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048 448 P-----I-------GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515 (608)
Q Consensus 448 ~-----~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~ 515 (608)
+ . .....|...+..+...++.++|..++.++-.++|.....+. ..|.++...|++.
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~------------~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY------------LRGLLLEVKGQLE 701 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH------------HhhHHHHHHHhhH
Confidence 0 0 01345667778888888888888888888888877766664 8899999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE--DCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
+|.+.|..++.++|+++.....+|.++.+.|+-.-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..++
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888 9999999999999999999999999999999999999999
Q ss_pred HhCCCCHH
Q 040048 594 KEAPDDEE 601 (608)
Q Consensus 594 ~l~P~~~~ 601 (608)
++.+.+|.
T Consensus 782 qLe~S~PV 789 (799)
T KOG4162|consen 782 QLEESNPV 789 (799)
T ss_pred hhccCCCc
Confidence 99998874
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.3e-17 Score=161.25 Aligned_cols=203 Identities=16% Similarity=0.128 Sum_probs=146.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
+...|++++|+..|++++. ..+.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~-~~~~-------------------------------------------------------- 131 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIE-DPLY-------------------------------------------------------- 131 (234)
T ss_pred HHHcccHHHHHHHHHHHHh-cccc--------------------------------------------------------
Confidence 9999999999988888764 1100
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
+. ....+..+|.++...|++++|...+.+++...|++...+.
T Consensus 132 -----------------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 173 (234)
T TIGR02521 132 -----------------PQ----------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL----------- 173 (234)
T ss_pred -----------------cc----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH-----------
Confidence 00 1344445566666666666666666666666665544433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
.+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 174 -~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 174 -ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555666666666666666665555555555555555555555555555555554443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.3e-17 Score=161.15 Aligned_cols=202 Identities=20% Similarity=0.165 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
+..++.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++. ..|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~----------- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT-LNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC-----------
Confidence 567888888888888888888888888888888888888888888888888888888888766 33332
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
..++..
T Consensus 99 --------------------------------------------------------------------------~~~~~~ 104 (234)
T TIGR02521 99 --------------------------------------------------------------------------GDVLNN 104 (234)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDS--NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL 535 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 535 (608)
+|.++...|++++|+..+++++...+ .....+ ..+|.++...|++++|+..|.+++..+|.+...+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL------------ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence 88888888999999999998887532 222333 3789999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999998887755
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4e-18 Score=171.92 Aligned_cols=257 Identities=17% Similarity=0.145 Sum_probs=220.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++..+-..--+++..|+..+=..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|....+|...|.
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 56665554433399999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
.|...|+.++|+.+|..|-+ +-+.. ..-...+|.-|..
T Consensus 355 sfa~e~EhdQAmaaY~tAar-l~~G~-----------------------------------------hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAAR-LMPGC-----------------------------------------HLPSLYLGMEYMR 392 (611)
T ss_pred HhhhcchHHHHHHHHHHHHH-hccCC-----------------------------------------cchHHHHHHHHHH
Confidence 99999999999999998876 33332 1223456778888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN----NKEVNMVMRKAK 496 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~ 496 (608)
.++++-|..+|.+++.+.|.+ +-++..+|.+.+..+.|.+|..+|+.++..-+. .. .|.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~D----------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~------ 455 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSD----------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWE------ 455 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCc----------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chh------
Confidence 899999999999999999986 888999999999999999999999999843222 11 121
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
-.+.++|.++.+.+++++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.++|.+.|++..+--.|+.+.
T Consensus 456 --p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 --PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred --HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 224599999999999999999999999999999999999999999999999999999999999999977766666554
Q ss_pred HH
Q 040048 577 AK 578 (608)
Q Consensus 577 ~~ 578 (608)
..
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 43
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=4.3e-17 Score=170.60 Aligned_cols=304 Identities=15% Similarity=0.126 Sum_probs=229.7
Q ss_pred CcccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCChhH-HHHHHHH
Q 040048 231 HPQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIM-GNEDYKAGNFAEALALYDAAISIDPNKASY-RSNKTAA 307 (608)
Q Consensus 231 ~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-g~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~la~~ 307 (608)
.+...+..++.....|.+..++........ ...|..++.+ +......|+++.|..+|.++.+.+|+...+ ....+.+
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 444455555555555666666655554322 2345666665 555599999999999999999999998544 3455899
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH--HHHHHHhHHHHH
Q 040048 308 LIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL--QAHLNKCTDAKR 385 (608)
Q Consensus 308 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~--~~~~~~~~~~~~ 385 (608)
+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+.+..+ ....+......+ ..+..+......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888765 333222111111 222222222223
Q ss_pred hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc
Q 040048 386 TRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC 465 (608)
Q Consensus 386 ~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~ 465 (608)
..+.+.....++..-...+++ +.+...++..+...|+.++|...++++++..++ ..+....+.+ ..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-----------~~l~~l~~~l--~~ 307 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-----------ERLVLLIPRL--KT 307 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHhhc--cC
Confidence 333344444444333333433 678899999999999999999999999986554 4444444443 45
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL 545 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 545 (608)
+++++++..+++.++..|+++.... .+|.++...++|++|..+|+++++..|++ ..+..++.++.++
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l------------~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~ 374 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWS------------TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRL 374 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Confidence 9999999999999999999999876 88999999999999999999999999985 4466899999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 040048 546 GQFEKAIEDCNAALNVR 562 (608)
Q Consensus 546 g~~~~A~~~~~~al~~~ 562 (608)
|+.++|..+|++++.+.
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998764
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=9.8e-17 Score=157.14 Aligned_cols=286 Identities=15% Similarity=0.048 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-SYRSNKTAALIAL--GRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
.-...+..++++|+++.|++.++-.-..+.... .+-.++..+++.+ .++..|..+...++.++..++.++.+.|.+-
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 345567788999999999999876555544432 3456666666663 4789999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
+..|++++|.+.|++++. .+... .+++++.+..+..+|+.++|+.+|-+.-.+--++ .+++..++.+|..+.
T Consensus 501 f~ngd~dka~~~ykeal~-ndasc------~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qianiye~le 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN-NDASC------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANIYELLE 572 (840)
T ss_pred eecCcHHHHHHHHHHHHc-CchHH------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhh
Confidence 999999999999999987 44443 7899999999999999999999998876554333 578899999999999
Q ss_pred ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048 423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR 502 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 502 (608)
+..+|+++|.++..+-|.+ +.++..+|.+|-+.|+-.+|..++-......|.+.+...
T Consensus 573 d~aqaie~~~q~~slip~d----------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie------------ 630 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPND----------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE------------ 630 (840)
T ss_pred CHHHHHHHHHHhcccCCCC----------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH------------
Confidence 9999999999999999986 899999999999999999999999999999999988876
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
.+|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-|.++.-.+|-
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 7788999999999999999999999999988889999999999999999999999999999999998888888777663
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=4.5e-17 Score=147.57 Aligned_cols=208 Identities=15% Similarity=0.108 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
..+...+|..|+..|++..|..-+++||+.||++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788888888888999889888999998888888888888888888888888888899888888888888888888888
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
.+|++++|...|++++. +|..
T Consensus 115 ~qg~~~eA~q~F~~Al~--~P~Y--------------------------------------------------------- 135 (250)
T COG3063 115 AQGRPEEAMQQFERALA--DPAY--------------------------------------------------------- 135 (250)
T ss_pred hCCChHHHHHHHHHHHh--CCCC---------------------------------------------------------
Confidence 88888888888888874 2322
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
+ ..+..+.++|.|.++.|+++.|.+.|+++++++|+.+.... .
T Consensus 136 ---------------~----------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l------------~ 178 (250)
T COG3063 136 ---------------G----------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL------------E 178 (250)
T ss_pred ---------------C----------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH------------H
Confidence 0 12667777888888888888888888888888877777665 6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
++..+++.|+|..|..++++.....+-.+..+.....+-...|+-+.|-++=.+.....|...+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7777777777777777777777666666666666666667777777766666666666666543
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.79 E-value=1.1e-16 Score=164.01 Aligned_cols=352 Identities=15% Similarity=0.117 Sum_probs=263.8
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 040048 234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311 (608)
Q Consensus 234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 311 (608)
..|+.+++.+....+.....+++.++. |.+++.+-..|..+...|+-++|..+.+.++..++.+...|+.+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 445555555555445555666677765 678999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 312 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
.+|++|+++|+.|+.++|++...|..++.+..++++++.....-.+.++ +.|.. ...|+..+..+.-.|++..
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq-l~~~~------ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ-LRPSQ------RASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhhh------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888888 77776 5677888888888999999
Q ss_pred HHHHHHHHHHcC---CCCh----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048 392 LIQETRAAIAGG---ADSA----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA 464 (608)
Q Consensus 392 A~~~~~~al~~~---~~~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~ 464 (608)
|+..++...... |+.. .........++.+.|.+++|++.+..--...-+ ........|.+++.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D----------kla~~e~ka~l~~k 231 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD----------KLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH----------HHHHhhhHHHHHHH
Confidence 998888776654 2211 234445567778889999998887665432222 25566678999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--------HHHH--------------HHHHHHHHHcCCHHHHH----
Q 040048 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG--------VAAA--------------RSNGNALFKQAKFSEAA---- 518 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------~~~~--------------~~lg~~~~~~g~~~eA~---- 518 (608)
++++++|+..|...+..+|++...+..+..+.- +..+ ..++.....-.++.+.+
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999999999999999877654433220 0000 00000000000111110
Q ss_pred -------------------------HHHHHhh-------cC----C--------CCC--HHHHHHHHHHHHHcCCHHHHH
Q 040048 519 -------------------------AAYGDGL-------GL----D--------PYN--SVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 519 -------------------------~~~~~al-------~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~ 552 (608)
.+.++.+ .- + |.. .+.++.++.-+...|+++.|.
T Consensus 312 ~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 312 RPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred HHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 0112211 10 0 111 356677888899999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
.+++.|+...|..++.|...|+++...|++++|..+++.+.++|-.|.-+
T Consensus 392 ~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 392 EYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999999999999999999999999998776644
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.6e-16 Score=150.14 Aligned_cols=268 Identities=18% Similarity=0.163 Sum_probs=126.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-----HRAHHRLANLYLR 344 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~ 344 (608)
.|.-++...+.++|+..|-.+++.+|...+++..+|..+...|..+.|+..-+..+. .|+. ..+...||.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555444333 2322 2244555555555
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
.|-++.|...|..... . +. ....+.-.+..+|-...+|++||+..++..+.++
T Consensus 120 aGl~DRAE~~f~~L~d-e-~e-----fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-------------------- 172 (389)
T COG2956 120 AGLLDRAEDIFNQLVD-E-GE-----FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-------------------- 172 (389)
T ss_pred hhhhhHHHHHHHHHhc-c-hh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--------------------
Confidence 5555555555555432 0 11 1133334444444455555555555555544443
Q ss_pred HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048 425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504 (608)
Q Consensus 425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l 504 (608)
...... .+..+..+|..+....+++.|+..+.++++.+|+...+.. .+
T Consensus 173 ---------------q~~~~e-----IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi------------~l 220 (389)
T COG2956 173 ---------------QTYRVE-----IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI------------IL 220 (389)
T ss_pred ---------------ccchhH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh------------hh
Confidence 322111 1344444444444555555555555555555555444433 44
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE 583 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 583 (608)
|.++...|+|+.|++.++.+++.+|+. +++...|..||.++|+.++.+..+.++.+..+.. .+-..++.+-....-.+
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGID 299 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChH
Confidence 555555555555555555555554443 3344444555555555555555555555444332 23333333333333344
Q ss_pred HHHHHHHHHHHhCCC
Q 040048 584 ASMQDYEILKKEAPD 598 (608)
Q Consensus 584 ~A~~~~~~al~l~P~ 598 (608)
.|..++.+-+...|+
T Consensus 300 ~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 300 AAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHhhCCc
Confidence 444444444444443
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=7.9e-17 Score=145.98 Aligned_cols=212 Identities=20% Similarity=0.181 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
..+...+|.-|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++++. ++|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-l~p~~----------- 102 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS-LAPNN----------- 102 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh-cCCCc-----------
Confidence 456888999999999999999999999999999999999999999999999999999999998 77665
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
.+++.+
T Consensus 103 --------------------------------------------------------------------------GdVLNN 108 (250)
T COG3063 103 --------------------------------------------------------------------------GDVLNN 108 (250)
T ss_pred --------------------------------------------------------------------------cchhhh
Confidence 678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQ--DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL 535 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 535 (608)
.|..++.+|++++|...|++++.. .+.....+. ++|.|..+.|+++.|..+|+++++++|+.+...
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~e------------N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLE------------NLGLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhh------------hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 999999999999999999999863 233344444 999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
..++..+++.|+|-.|..++++.....+-..+.+.....+-...|+-+.|-++=.+.-...|..++....+.
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f~~ 248 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTFLA 248 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhHhc
Confidence 999999999999999999999999988888888888889999999999999999999999999998765543
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.2e-17 Score=158.39 Aligned_cols=289 Identities=13% Similarity=0.003 Sum_probs=259.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
.+.+...+..+|.+++..|++.+|+..|+++.-++|......-..|..+...|+++.-.......+.++.....-|+--+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 37889999999999999999999999999999999999999999999999999999998888888888877888899999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
.+++...++..|+.+-++++. .+|.+ ...++.+|..+...++.++|+-.|+.++.+.|.. -+.|..+..+|+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~-~~~r~------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-L~~Y~GL~hsYL 379 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCID-SEPRN------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-LEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhc-cCccc------chHHHhccHHHHhccchHHHHHHHHHHHhcchhh-HHHHHHHHHHHH
Confidence 999999999999999999999 99988 7899999999999999999999999999998766 478999999999
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA-QVNL-ACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 497 (608)
..|++.||...-+.++...|.. +..+..+| .++. .-.--++|..++++++.+.|....+..
T Consensus 380 A~~~~kEA~~~An~~~~~~~~s----------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------- 442 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNS----------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------- 442 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcc----------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH-------
Confidence 9999999999998888877764 77777775 4443 333468999999999999999988876
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
.++.++...|.+.+++.++++.+...|+ ...+..||.++...+.+.+|+++|..|+.++|++..+...+-.+-.
T Consensus 443 -----~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 443 -----LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred -----HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 8899999999999999999999999886 5788899999999999999999999999999999888777655544
Q ss_pred Hc
Q 040048 578 KI 579 (608)
Q Consensus 578 ~~ 579 (608)
.+
T Consensus 517 ~~ 518 (564)
T KOG1174|consen 517 SD 518 (564)
T ss_pred cc
Confidence 43
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=1.7e-15 Score=173.27 Aligned_cols=301 Identities=11% Similarity=0.058 Sum_probs=194.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHHRL 338 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l 338 (608)
.+...|..+-..|.+.|++++|..+|+++.+.... +...|..+...|.+.|++++|+..|+++... .|+ ...|..+
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsL 548 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNAL 548 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 45555555666666666666666666665544321 3455566666666666666666666665442 232 4556666
Q ss_pred HHHHHHcCCHHHHHHHHHHhCC---CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGP---EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQA 415 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la 415 (608)
...|.+.|++++|.+.|.+... .+.|+ ...+..+...+.+.|++++|.+.|+.+.+.+.......|..+.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 6666666666666666665532 02333 2344445555666677777777777777666555556677777
Q ss_pred HHHHHcCChHHHHHHhhcCCCC--CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Q 040048 416 EALLKLHKHQEADETLKNGPNF--DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVM 492 (608)
Q Consensus 416 ~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 492 (608)
..|.+.|++++|+.+|+++... .|+ ...|..+...+...|++++|..+++++.+.... +...
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD-----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t---- 686 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPD-----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS---- 686 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----
Confidence 7777777777777777666543 232 556666777777777777777777776654321 1222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHH
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--RPGYSKA 568 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a 568 (608)
+..+...|.+.|++++|+.+|+++... .| +...|..+...|.+.|++++|++.|++.... .| +...
T Consensus 687 --------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~T 756 (1060)
T PLN03218 687 --------YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTIT 756 (1060)
T ss_pred --------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHH
Confidence 246778888888888888888887653 33 4677888888888888888888888887654 34 3556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
|..+...+.+.|++++|.++|.++++.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777778888888888888888888774
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=2.1e-16 Score=178.03 Aligned_cols=322 Identities=11% Similarity=0.026 Sum_probs=250.7
Q ss_pred CcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C-----------------------------
Q 040048 248 SAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDP--N----------------------------- 296 (608)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p--~----------------------------- 296 (608)
.++|..++..+.. .+...|..+...|.+.|++++|+.+|++.++..+ +
T Consensus 174 ~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 174 LIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3445556666533 4677888899999999999999999999876432 1
Q ss_pred -----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC-CCchhHHHH
Q 040048 297 -----KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE-ADQVDIAKA 370 (608)
Q Consensus 297 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~ 370 (608)
+..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.... +.|+.
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---- 325 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---- 325 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----
Confidence 22345667788999999999999998764 456789999999999999999999999887541 34443
Q ss_pred HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG 450 (608)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~ 450 (608)
..+..+...+.+.|+++.|...+..+++.+......++..+...|.+.|++++|...|++..+ |+
T Consensus 326 ---~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d---------- 390 (697)
T PLN03081 326 ---FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN---------- 390 (697)
T ss_pred ---HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC----------
Confidence 356667777888899999999999999887666667888999999999999999999998865 22
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH----------------H-------HHHHHHHHH
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQ--DSNNKEVNMVMRKA----------------K-------GVAAARSNG 505 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~----------------~-------~~~~~~~lg 505 (608)
...|..+...|...|+.++|++.|++.... .|+......++... . ....|..+.
T Consensus 391 -~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 -LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred -eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 567888999999999999999999998763 34443333222110 0 023456677
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS 585 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 585 (608)
..+.+.|++++|.+.+++.- ..| +..+|..+...+...|+++.|...+++++++.|++...|..++.+|.+.|++++|
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 88888888888888887652 334 4667888888888999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHh
Q 040048 586 MQDYEILKKE 595 (608)
Q Consensus 586 ~~~~~~al~l 595 (608)
.+.++...+.
T Consensus 548 ~~v~~~m~~~ 557 (697)
T PLN03081 548 AKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHc
Confidence 9999887754
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.5e-18 Score=161.17 Aligned_cols=250 Identities=14% Similarity=0.046 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
.--..+|.||++.|-+.+|...++.+++..| .++.+..++.+|.+..+...|+..|.+.++..|.+...+..++.++..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3345699999999999999999999999887 478889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
++++++|+++|+.+++ .+|.+. +...-+|.-|+..++.
T Consensus 303 m~~~~~a~~lYk~vlk-~~~~nv-----------------------------------------EaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLK-LHPINV-----------------------------------------EAIACIAVGYFYDNNP 340 (478)
T ss_pred HHhHHHHHHHHHHHHh-cCCccc-----------------------------------------eeeeeeeeccccCCCh
Confidence 9999999999999998 888772 2222334555566666
Q ss_pred HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048 425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504 (608)
Q Consensus 425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l 504 (608)
+-|+.+|++++++... +++++.++|.+.+..++++-++..|++++....+.... ++.|+++
T Consensus 341 E~AlryYRRiLqmG~~----------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a---------aDvWYNl 401 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQ----------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA---------ADVWYNL 401 (478)
T ss_pred HHHHHHHHHHHHhcCC----------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh---------hhhhhcc
Confidence 6666666666665443 37888888888888888888888888888766543322 2345588
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..|-...|+-.+..++++.+-
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 988889999999999999999999999999999999999999999999999999888888877777766543
No 64
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=1.1e-16 Score=160.24 Aligned_cols=242 Identities=15% Similarity=0.047 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
.+++-.+-.++...+.+++|+..+.++|.++|++..+|..++.++..+| ++++++..++++++.+|++..+|+..+.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3455445556677889999999999999999999999999999999998 679999999999999999999999999888
Q ss_pred HHcCCH--HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 343 LRLGEV--EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 343 ~~~g~~--~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
..+|+. ++++.++++++. .+|.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~-~dpkN------------------------------------------------------ 141 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS-LDAKN------------------------------------------------------ 141 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH-hCccc------------------------------------------------------
Confidence 777763 445555555544 33332
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
..+|..++.++...|+++++++.+.++++.+|.+..+|.
T Consensus 142 -------------------------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~---------- 180 (320)
T PLN02789 142 -------------------------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN---------- 180 (320)
T ss_pred -------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH----------
Confidence 788888999999999999999999999999999998886
Q ss_pred HHHHHHHHHHc---CCH----HHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 501 ARSNGNALFKQ---AKF----SEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 501 ~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
.++.++... |.+ ++++.+..++|..+|++..+|..++.++.. +++..+|+..+.+++...|.++.++
T Consensus 181 --~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 181 --QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred --HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 666666554 323 578889999999999999999999999988 4567889999999999999999999
Q ss_pred HHHHHHHHHcC------------------CHHHHHHHHHHHHHhCCCCHHHH
Q 040048 570 LRRADCFAKIE------------------KWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 570 ~~la~~~~~~g------------------~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
-.|+.+|.... ..++|...++..-+.||=-...|
T Consensus 259 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 259 SDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 99999998642 34778888888877777444433
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=3.4e-15 Score=170.78 Aligned_cols=321 Identities=10% Similarity=0.067 Sum_probs=260.8
Q ss_pred CcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 248 SAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
..++..+++.+.. .+...|..+-..+...|++++|..+|+++.+.... +...|..+..+|.+.|+.++|...|+++.+
T Consensus 422 ~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 422 VKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3345555555543 67788888888999999999999999998876433 467788899999999999999999999987
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc--
Q 040048 327 IEP-HYHRAHHRLANLYLRLGEVEKAIYHFKHAGP-EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG-- 402 (608)
Q Consensus 327 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 402 (608)
... .+...|..+...|.+.|++++|+..|.+... .+.|+ ...|..+...+.+.|++++|...+.++...
T Consensus 501 ~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 501 AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-------RVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 543 2578899999999999999999999988753 13454 356777778888899999999999999763
Q ss_pred CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 040048 403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ- 481 (608)
Q Consensus 403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 481 (608)
........|..+...|.+.|++++|.++|+.+.+.... .+...|..+...|.+.|++++|+.+|.+..+.
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~---------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK---------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22222467888899999999999999999988776432 13788999999999999999999999998875
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 482 -DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 482 -~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
.|+. ..+ ..+...+.+.|++++|.++++++.+.. +.+...|..+...|.+.|++++|++.|++..
T Consensus 645 v~PD~-~Ty------------nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 645 VKPDE-VFF------------SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred CCCCH-HHH------------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3442 222 367789999999999999999999864 3467899999999999999999999999987
Q ss_pred hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 040048 560 NV--RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE--APDD 599 (608)
Q Consensus 560 ~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~ 599 (608)
+. .| +...|..+...|.+.|++++|++.|++..+. .|+.
T Consensus 712 ~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 712 SIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 64 44 4678999999999999999999999988764 4553
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=8e-17 Score=167.89 Aligned_cols=251 Identities=20% Similarity=0.150 Sum_probs=197.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------ 327 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------ 327 (608)
.-..+...+|..|..+|+|++|+..+++++++ .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 33456777999999999999999999999998 5555556667999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 328 --EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 328 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
+|..+.++.+||.+|...|++++|..++++++. ++++...
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------I~~~~~~---- 318 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------IYEKLLG---- 318 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------------HHHHhhc----
Confidence 344466899999999999999999999998865 1111000
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN 485 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 485 (608)
...|+ ....+..++.++..++++++|+.++++++++..+-
T Consensus 319 ------------------------------~~~~~----------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 319 ------------------------------ASHPE----------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred ------------------------------cChHH----------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 00111 15667778888888999999999999888754311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--------PYNSVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
+.... ...+..+.++|.+|..+|+|++|.++|++|+.+. +.....++++|..|.+++++.+|...|.+
T Consensus 359 ~g~~~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 359 PGEDN----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred ccccc----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 11100 0113345699999999999999999999999863 33467889999999999999999999999
Q ss_pred HHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 558 ALNV-------RPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 558 al~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
++.+ .|+....|.+||.+|..+|++++|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9876 344567889999999999999999999999984
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=8.1e-16 Score=157.66 Aligned_cols=314 Identities=17% Similarity=0.158 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
..++..+.-++..++|...+...+.+++..|++++.+...|..+..+|+-++|..+...++..++.....|+.+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
..+|++|+++|..|+. ++|++ ...+..++....++++++.....-...++..|.. ...|...+..+...|++
T Consensus 88 dK~Y~eaiKcy~nAl~-~~~dN------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALK-IEKDN------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-RASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhHHHHHHHHHHHHh-cCCCc------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999 8899999999999999999999999999998876 36788899999999999
Q ss_pred HHHHHHhhcCCCCC---CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 425 QEADETLKNGPNFD---VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 425 ~eA~~~l~~al~~~---p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
..|...++...+.. |+... ....+.......++...|.+++|++.+..--...-+.....
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~-----~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~------------ 222 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKED-----YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE------------ 222 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHH-----HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh------------
Confidence 99998876655433 22111 12367777888889999999999888765433222222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH----------------------
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI-EDCNAA---------------------- 558 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a---------------------- 558 (608)
...|.++.+.+++++|+..|...+..+|++...+..+-.++.+-.+--+++ ..|...
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 277899999999999999999999999999877766655553111111111 111111
Q ss_pred ----------------------------------------Hh-----cC--------------CCC--HHHHHHHHHHHH
Q 040048 559 ----------------------------------------LN-----VR--------------PGY--SKARLRRADCFA 577 (608)
Q Consensus 559 ----------------------------------------l~-----~~--------------p~~--~~a~~~la~~~~ 577 (608)
+. +. |-. ...++.++.-+.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 00 00 111 234577889999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 578 KIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
..|+++.|..++..|+...|.-.+..
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999887765
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=8.5e-15 Score=138.61 Aligned_cols=300 Identities=15% Similarity=0.068 Sum_probs=226.4
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHH
Q 040048 234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-----ASYRSNKTA 306 (608)
Q Consensus 234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~ 306 (608)
..|-.++.+-.++..+.|..++..++. +...++.+.+|+.+...|+.+.||.+-+..++ .|+- ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 345566666667777788888888865 45678999999999999999999998877554 4554 357889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHh
Q 040048 307 ALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRT 386 (608)
Q Consensus 307 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~ 386 (608)
=|+..|-++.|...|...++...--..+...|..+|....+|++|++.-++... +.+... ....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~-~~eI-------------- 179 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTY-RVEI-------------- 179 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccc-hhHH--------------
Confidence 999999999999999999876666678999999999999999999999998887 666552 1111
Q ss_pred hcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC
Q 040048 387 RDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG 466 (608)
Q Consensus 387 ~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g 466 (608)
...|..++..+....+++.|+..+.++++.+|+. ..+-+.+|.++...|
T Consensus 180 ---------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----------vRAsi~lG~v~~~~g 228 (389)
T COG2956 180 ---------------------AQFYCELAQQALASSDVDRARELLKKALQADKKC----------VRASIILGRVELAKG 228 (389)
T ss_pred ---------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc----------eehhhhhhHHHHhcc
Confidence 3456667777777778888888888888888875 677778888999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 546 (608)
+|+.|++.++.+++.+|+...... -.+-.+|...|+.++.+..+.++++..+. +.+...++..-....
T Consensus 229 ~y~~AV~~~e~v~eQn~~yl~evl-----------~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~ 296 (389)
T COG2956 229 DYQKAVEALERVLEQNPEYLSEVL-----------EMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQE 296 (389)
T ss_pred chHHHHHHHHHHHHhChHHHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhh
Confidence 999999999988888887643322 36778888899999999988888888765 445556666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 040048 547 QFEKAIEDCNAALNVRPGYSKARLRRADCFA--KIEKWEASMQDYEILK 593 (608)
Q Consensus 547 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~g~~~~A~~~~~~al 593 (608)
-.+.|..++.+-+...|+.-..+..+..-.. ..|...+....++..+
T Consensus 297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 297 GIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 6788888888888888875433332222221 2344555555555554
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-15 Score=159.54 Aligned_cols=283 Identities=19% Similarity=0.146 Sum_probs=226.1
Q ss_pred CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C
Q 040048 261 RMDPETLKIMGNEDYKA-----------GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-E 328 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~ 328 (608)
...+..+..+|.+|-.+ -...++++.++++++.+|.|+.+.++++.-|...++.+.|....++++++ .
T Consensus 430 ~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~ 509 (799)
T KOG4162|consen 430 HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR 509 (799)
T ss_pred hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 35677888888877633 34568999999999999999999999999999999999999999999999 4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH--------------HHH-------HHHHH----------
Q 040048 329 PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK--------------AKS-------LQAHL---------- 377 (608)
Q Consensus 329 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~--------------~~~-------~~~~~---------- 377 (608)
.+++.+|..++.++...+++.+|+...+.++. -.+++... ... +..|-
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 56689999999999999999999999998877 33332100 000 00000
Q ss_pred ------HHhHHHHHhhcHHHHHHHHHHHHHc--------C-------------CCC----hHHHHHHHHHHHHHcCChHH
Q 040048 378 ------NKCTDAKRTRDWNTLIQETRAAIAG--------G-------------ADS----APQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 378 ------~~~~~~~~~~~~~~A~~~~~~al~~--------~-------------~~~----~~~~~~~la~~~~~~g~~~e 426 (608)
..+.......+..+++..+.++... + |+. ...+|...+..+...+..++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 0000111112333333333333211 1 111 13467788999999999999
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN 506 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~ 506 (608)
|..++.++-.++|.. +..|+..|.++...|++++|.+.|..++.++|++..... .+|.
T Consensus 669 a~~CL~Ea~~~~~l~----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~------------Ala~ 726 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLS----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT------------ALAE 726 (799)
T ss_pred HHHHHHHHHhcchhh----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH------------HHHH
Confidence 999999999998864 899999999999999999999999999999999999876 8999
Q ss_pred HHHHcCCHHHHHH--HHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 507 ALFKQAKFSEAAA--AYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 507 ~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.+.|+.++|.++|..|+++.+.+|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999888888 99999999999999999999999999999999999999999988765
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=2.3e-14 Score=148.66 Aligned_cols=316 Identities=11% Similarity=-0.090 Sum_probs=231.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 336 (608)
.|..+.++..+|..+...|+.++|...+.++....|.+ ....+..+.++...|++++|+..++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46778899999999999999999999999999888765 445778899999999999999999999999999988777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCC---CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPE---ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (608)
. +..+...|++..+.....+++.. ..|.. ...+..++.++...|++++|+..++++++..|++ ...+..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence 5 55555555544444444443321 34443 5566678889999999999999999999999988 467888
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
+|.++...|++++|+.++++++...|.... .....+..+|.++...|++++|+..|++++...|..........
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcc------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 999999999999999999999998775211 11456778999999999999999999999876663222211000
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHhhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAA---YGDGLGLD--PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG---- 564 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~---~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 564 (608)
. ..+...+...|....+..+ ........ +.........+.++...|+.++|...++.+......
T Consensus 228 ~-------~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 300 (355)
T cd05804 228 A-------ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDN 300 (355)
T ss_pred H-------HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCch
Confidence 0 0111222333322222222 11111111 122233346888889999999999999887664322
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 565 -----YSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 565 -----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
........|.++...|++++|.+.+..++.+.
T Consensus 301 ~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 301 KQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24566788999999999999999999999764
No 71
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=9.4e-15 Score=168.69 Aligned_cols=317 Identities=11% Similarity=0.017 Sum_probs=188.0
Q ss_pred CCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh--------------------------
Q 040048 247 SSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISI--DPNKA-------------------------- 298 (608)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~-------------------------- 298 (608)
..++|..++..+. ..+...|..+...|.+.|++++|+.+|++.... .|+..
T Consensus 338 ~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 338 SWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3345555555543 345566777777777777777777777766443 24332
Q ss_pred --------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048 299 --------SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370 (608)
Q Consensus 299 --------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 370 (608)
.++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.+..+.|+.....
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 1223344445555555555555554432 23345555666666666666666666665543444432211
Q ss_pred HHHHHHH----------------------------HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 371 KSLQAHL----------------------------NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 371 ~~~~~~~----------------------------~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
..+.++. .+...|.+.|++++|...|+.. .+ ....|..+...|...|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~--d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EK--DVVSWNILLTGYVAHG 568 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CC--ChhhHHHHHHHHHHcC
Confidence 1111111 1123444555555555555543 11 1345555555666666
Q ss_pred ChHHHHHHhhcCCC--CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 423 KHQEADETLKNGPN--FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 423 ~~~eA~~~l~~al~--~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
+.++|+.+|++..+ ..|+ ...+..+-..+...|++++|..+|+...+..+-.+.. ..
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd-----------~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~----------~~ 627 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPD-----------EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL----------KH 627 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCC-----------cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch----------HH
Confidence 66666666655443 2232 3334444445555566666666666555332222221 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.|....++++++.|++...|..++.+|...|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 347788888889999998888875 34454 6677777777788888888888888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 040048 581 KWEASMQDYEILKKE 595 (608)
Q Consensus 581 ~~~~A~~~~~~al~l 595 (608)
+|++|.+..+...+.
T Consensus 706 ~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 706 KWDEVARVRKTMREN 720 (857)
T ss_pred ChHHHHHHHHHHHHc
Confidence 999999888877653
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.71 E-value=2e-15 Score=160.75 Aligned_cols=313 Identities=13% Similarity=0.008 Sum_probs=248.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHF 355 (608)
Q Consensus 276 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 355 (608)
.+.+...|+..|-+++++++..+.+|..+|.+|...-+...|..+|.+|.++++.+..++-..+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34558889999999999999999999999999998889999999999999999999999999999999999999998886
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048 356 KHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435 (608)
Q Consensus 356 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al 435 (608)
-.+-+ ..|... ....|..+|..+...++..+++..++.++..+|.+ ...|..+|.+|...|++..|+..|.++.
T Consensus 550 l~~~q-ka~a~~----~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 550 LRAAQ-KAPAFA----CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHhh-hchHHH----HHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 55544 444332 23344458888888899999999999999998887 4788889999999999999999999999
Q ss_pred CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---------------------------
Q 040048 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV--------------------------- 488 (608)
Q Consensus 436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------------- 488 (608)
.++|.+ ....+..+.+....|+|.+|+..+...+.........
T Consensus 624 ~LrP~s----------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 624 LLRPLS----------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred hcCcHh----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 998875 5556667777777777777777766655432211110
Q ss_pred ----------------------HHHHHHH--------------------------------------------------H
Q 040048 489 ----------------------NMVMRKA--------------------------------------------------K 496 (608)
Q Consensus 489 ----------------------~~~l~~~--------------------------------------------------~ 496 (608)
|.++... .
T Consensus 694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHH--------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048 497 GVAAARSNGNALFK--------QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568 (608)
Q Consensus 497 ~~~~~~~lg~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 568 (608)
....|+++|.-|+. +.+...|+.++.++++++.++...|..||.+ ...|++.-|..+|-+.+...|.....
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~ 852 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQ 852 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhh
Confidence 02235777777665 2334579999999999999999999999988 66689999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
|.++|.++.+..+++-|...|.++..++|.|...|.+
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 9999999999999999999999999999999887754
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.3e-16 Score=153.68 Aligned_cols=272 Identities=17% Similarity=0.176 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++..|...+..++..|+|++|+-.+++.++++|.....+...+.|+..+++..+|...++ +..++
T Consensus 80 pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~----- 146 (486)
T KOG0550|consen 80 PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY----- 146 (486)
T ss_pred ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh-----
Confidence 56688999999999999999999999999999999999999999999999999999988887 11111
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
....|+..+++.+. .+...+....+.+..+.++...++++.|+...-..+++++.+. ..+...|.++..
T Consensus 147 ------~~anal~~~~~~~~----s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-~al~vrg~~~yy 215 (486)
T KOG0550|consen 147 ------KAANALPTLEKLAP----SHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA-EALYVRGLCLYY 215 (486)
T ss_pred ------HHhhhhhhhhcccc----cccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh-HHHHhccccccc
Confidence 22334444444332 2222244456677788888889999999999988888888874 667777999999
Q ss_pred cCChHHHHHHhhcCCCCCCcccccc--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRF--FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 498 (608)
..+.+.|+..|++++.++|+....- +........+...|.-.++.|++.+|.+.|.++|.++|++.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na-------- 287 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA-------- 287 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH--------
Confidence 9999999999999999999854321 112234677788999999999999999999999999999877653
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
..|.++|.+...+|+..+|+..++.++++++....++...|.|+..+++|++|+++|+++++...+
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 335699999999999999999999999999999999999999999999999999999999998765
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=162.40 Aligned_cols=263 Identities=16% Similarity=0.134 Sum_probs=195.1
Q ss_pred cccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 040048 236 YNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313 (608)
Q Consensus 236 y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 313 (608)
|..+..+...|...+|.-++.+.. .|.++++|..||.+....++-..|+..++++++++|++..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 344444444455555555555543 378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH
Q 040048 314 LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI 393 (608)
Q Consensus 314 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 393 (608)
-.+|+.++.+-|...|.+... ..+. ..+++..- ... .++..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l--~~a~---~~~~~~~~----~s~---~~~~~--------------------------- 409 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHL--VSAG---ENEDFENT----KSF---LDSSH--------------------------- 409 (579)
T ss_pred HHHHHHHHHHHHHhCccchhc--cccC---ccccccCC----cCC---CCHHH---------------------------
Confidence 999999999999988865221 0000 00010000 000 11111
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048 394 QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA 473 (608)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (608)
+..+...|+ .+....|.. .++++...||.+|...|+|++|+.
T Consensus 410 -----------------l~~i~~~fL-------------eaa~~~~~~--------~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 410 -----------------LAHIQELFL-------------EAARQLPTK--------IDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred -----------------HHHHHHHHH-------------HHHHhCCCC--------CChhHHhhhHHHHhcchHHHHHHH
Confidence 011111111 111111210 127888899999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIE 553 (608)
Q Consensus 474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 553 (608)
+|+.||...|++...|. .||-.+....+.++|+..|++|+++.|....++++||.++..+|.|++|++
T Consensus 452 cf~~AL~v~Pnd~~lWN------------RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWN------------RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHhcCCchHHHHH------------HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC----------CHHHHHHHHHHHHHcCCHHHHHH
Q 040048 554 DCNAALNVRPG----------YSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 554 ~~~~al~~~p~----------~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
+|-.||.+.+. +..+|-.|=.++..+++.+-+..
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99999998654 12467666677777777764443
No 75
>PLN02789 farnesyltranstransferase
Probab=99.70 E-value=1.3e-15 Score=152.42 Aligned_cols=215 Identities=13% Similarity=0.050 Sum_probs=181.7
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 040048 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG-EVEKAIYHFK 356 (608)
Q Consensus 278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 356 (608)
++|.+|..+|+.++. ..+++++|+..+.++|+++|++..+|...+.++..+| ++++++..+.
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 567777777776554 4567889999999999999999999999999999888 5788888887
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
+++. .+|.+
T Consensus 97 ~~i~-~npkn---------------------------------------------------------------------- 105 (320)
T PLN02789 97 DVAE-DNPKN---------------------------------------------------------------------- 105 (320)
T ss_pred HHHH-HCCcc----------------------------------------------------------------------
Confidence 7766 44444
Q ss_pred CCCcccccccCCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048 437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRF--EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF 514 (608)
Q Consensus 437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~ 514 (608)
..+|..++.++...|+. ++++.+++++++.+|.+..+|. .+|.++...|++
T Consensus 106 ---------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~------------~R~w~l~~l~~~ 158 (320)
T PLN02789 106 ---------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS------------HRQWVLRTLGGW 158 (320)
T ss_pred ---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHhhhH
Confidence 55666666666666653 6789999999999999999987 889999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHH
Q 040048 515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKL---GQF----EKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWE 583 (608)
Q Consensus 515 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~ 583 (608)
++|++++.++|+.+|.+..+|+.++.++..+ |.+ ++++.+..++|.++|++..+|..++.++.. +++..
T Consensus 159 ~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 159 EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 9999999999999999999999999998876 333 578999999999999999999999999988 45677
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 584 ASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 584 ~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|++.+.++++..|.+..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLL 262 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHH
Confidence 899999999999999888776654
No 76
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=1.1e-14 Score=164.29 Aligned_cols=304 Identities=13% Similarity=0.039 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC--------
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIE--PH-------- 330 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~-------- 330 (608)
..+...+..+...|.+.|++++|..+|++..+ | +...|..+...|.+.|++++|+..|+++++.. |+
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 45788899999999999999999999998754 3 56789999999999999999999999987643 22
Q ss_pred --------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHH
Q 040048 331 --------------------------YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384 (608)
Q Consensus 331 --------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (608)
+..++..+...|.+.|++++|...|++... .+ ...|..+...+.
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~------~vt~n~li~~y~ 301 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KT------TVAWNSMLAGYA 301 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CC------hhHHHHHHHHHH
Confidence 122455677889999999999999988643 23 456778888899
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA 464 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~ 464 (608)
+.|++++|+..|+++...+.......+..+...+...|++++|...+..+++.... .+..++..+...|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~---------~d~~~~~~Li~~y~k 372 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP---------LDIVANTALVDLYSK 372 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC---------CCeeehHHHHHHHHH
Confidence 99999999999999988765555678999999999999999999999888765422 136778889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCC------------
Q 040048 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPY------------ 530 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~------------ 530 (608)
.|++++|...|++..+ | +...|. .+...|.+.|+.++|+++|++.... .|+
T Consensus 373 ~G~~~~A~~vf~~m~~--~-d~~t~n------------~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 373 WGRMEDARNVFDRMPR--K-NLISWN------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred CCCHHHHHHHHHhCCC--C-CeeeHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 9999999999998754 2 222332 4445555555555555555554432 221
Q ss_pred -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 531 -----------------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 531 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHH
Confidence 1234444555555555555555555432 1122 23456666666666666666666
Q ss_pred HHHHHHHhCCCCHHHH
Q 040048 588 DYEILKKEAPDDEEVD 603 (608)
Q Consensus 588 ~~~~al~l~P~~~~~~ 603 (608)
.+++++++.|++...+
T Consensus 516 ~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 516 AAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHHHhCCCCCCCcch
Confidence 6666666666654433
No 77
>PLN03077 Protein ECB2; Provisional
Probab=99.68 E-value=5.3e-14 Score=162.50 Aligned_cols=332 Identities=16% Similarity=0.078 Sum_probs=209.1
Q ss_pred CCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------
Q 040048 247 SSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISI--DPN---------------------------- 296 (608)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~---------------------------- 296 (608)
..++|..++..+. ..|...|..+-..|.+.|++++|+.+|.+.... .|+
T Consensus 237 ~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 237 DVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred CHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3445555665553 346667888888888888888888888887653 333
Q ss_pred ------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-CCCchhHHH
Q 040048 297 ------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP-EADQVDIAK 369 (608)
Q Consensus 297 ------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~p~~~~~ 369 (608)
+...+..+...|.+.|++++|...|+++.. .+...|..+...|.+.|++++|++.|++... .+.|+.
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~--- 389 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE--- 389 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc---
Confidence 334455666667777777777777776532 2345677777777777777777777776532 133443
Q ss_pred HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048 370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
..+..+...+...|+++.+...+..+++.+......++..+...|.+.|++++|.+.|++..+. +
T Consensus 390 ----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d--------- 454 (857)
T PLN03077 390 ----ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--D--------- 454 (857)
T ss_pred ----eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--C---------
Confidence 2233333455667788888888888887776666778888999999999999999999987652 2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHH---------------------------------
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMRKA--------------------------------- 495 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~--------------------------------- 495 (608)
...|..+...|...|++++|+..|++.+.. .|+.......+.-.
T Consensus 455 --~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 --VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred --eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 557788888999999999999999998753 33333222222100
Q ss_pred -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 496 -------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIED 554 (608)
Q Consensus 496 -------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 554 (608)
....+|..+...|...|+.++|+.+|++..+. .|+ ...+..+-..+.+.|++++|.++
T Consensus 533 ~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence 01223445555555666666666666655542 233 33344444455566666666666
Q ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 555 CNAALNV---RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 555 ~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
|+...+. .| +...|..+..++.+.|++++|.+.+++. .+.|+ ..+|..|
T Consensus 612 f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aL 663 (857)
T PLN03077 612 FHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGAL 663 (857)
T ss_pred HHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHH
Confidence 6665532 22 2355666666666777777776666654 23443 4444443
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=6e-16 Score=164.72 Aligned_cols=373 Identities=12% Similarity=0.029 Sum_probs=284.1
Q ss_pred ccccccccCccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCc---------------chhHHHHhhhC
Q 040048 200 SSGVRGNNNTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSA---------------EPTSLCRALST 260 (608)
Q Consensus 200 ~~A~~~~~~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~---------------~a~~~~~~~~~ 260 (608)
..|-.++-+++.+++.++.+ .||.+|..- -..|...|+++..+++.+... ++...+-....
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 33555577888899988877 899999887 456778899999888876533 22222211111
Q ss_pred C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048 261 R----MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336 (608)
Q Consensus 261 ~----~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 336 (608)
. ..-+.|..+|..|...+++..|+..|+.++..+|++...|..+|.+|...|++..|++.|.++..++|.+..+.+
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 1 223467889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc-------CCCChHH
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG-------GADSAPQ 409 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~ 409 (608)
..+.+....|+|.+|+..+...+................++..+..+...|-+.++...+++.++. .-.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999999998876222222334445566666666676677777777777666543 1111122
Q ss_pred HHHHHHHHHHHc---C--------------------Ch---H---HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048 410 IYALQAEALLKL---H--------------------KH---Q---EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ 460 (608)
Q Consensus 410 ~~~~la~~~~~~---g--------------------~~---~---eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~ 460 (608)
.|..++.+..-. . .. + -+.+++-..+++ ..++..|+++|.
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-----------~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-----------AIHMYPWYNLGI 783 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-----------hhccchHHHHhH
Confidence 233333222111 1 00 0 112222222221 123567788887
Q ss_pred HHHH--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048 461 VNLA--------CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532 (608)
Q Consensus 461 ~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 532 (608)
-|+. +.+-..|+.++.+++++..++...|. .+|.+ ...|++.-|..+|-+.+...|...
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~Wn------------aLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWN------------ALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHH------------HHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 7765 23345899999999999999999997 67766 667999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
..|.++|.++.+..+++-|...|.++..++|.+...|...+.+....|+.-++...|....++.
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 9999999999999999999999999999999999999999999999999999999998855543
No 79
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=6.1e-12 Score=123.14 Aligned_cols=298 Identities=17% Similarity=0.076 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-HRAHHRLANLYL 343 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~ 343 (608)
.....-|..-+..|+|.+|.....++-+..+.....+..-+.+--++|+++.|-.++.++-+..+++ ..+...++.+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3445567777888999999999999888777777777777888889999999999999999885443 567788899999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH----HH
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA----LL 419 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~----~~ 419 (608)
..|+++.|.....+++. ..|.+ .........+|...|+|.....++.+.-+..--+.++.-..--.. +.
T Consensus 165 ~~~d~~aA~~~v~~ll~-~~pr~------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 165 NRRDYPAARENVDQLLE-MTPRH------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred hCCCchhHHHHHHHHHH-hCcCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999988 88877 566666778888999999999998888776544433332221111 11
Q ss_pred HcCChHHHH---HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048 420 KLHKHQEAD---ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK 496 (608)
Q Consensus 420 ~~g~~~eA~---~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 496 (608)
...+-..+. .+.+.....-.. ++.+...++.-+..+|++++|.+..+++++..-+..-..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~----------~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~------- 300 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRN----------DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR------- 300 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhc----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-------
Confidence 222222222 233333322221 377888899999999999999999999999877655221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
. .-...-++...=++..++.++..|+++.++..||.++++.+.|.+|..+|+.+++..|+ ...|..+|.++
T Consensus 301 ------~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~ 371 (400)
T COG3071 301 ------L--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL 371 (400)
T ss_pred ------H--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence 1 33456788999999999999999999999999999999999999999999999999876 56788999999
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 040048 577 AKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~al~l 595 (608)
.++|+..+|.+.++.++-+
T Consensus 372 ~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 372 DQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 9999999999999999864
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=1.5e-14 Score=128.56 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=112.4
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551 (608)
Q Consensus 472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 551 (608)
..+|+++++++|++ +. .+|.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++|
T Consensus 13 ~~~~~~al~~~p~~---~~------------~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 77 (144)
T PRK15359 13 EDILKQLLSVDPET---VY------------ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTA 77 (144)
T ss_pred HHHHHHHHHcCHHH---HH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 46788999999885 22 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|++++.+..+
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887543
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=8.9e-14 Score=135.28 Aligned_cols=191 Identities=15% Similarity=0.027 Sum_probs=155.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---H
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---A 334 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~ 334 (608)
+..++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 56788999999999999999999999999999999876 57899999999999999999999999999998765 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048 335 HHRLANLYLRL--------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406 (608)
Q Consensus 335 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 406 (608)
++.+|.++... |++++|+..|++++. ..|++....... ..+.... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~---~~~~~~~-------~~~------------- 165 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAK---KRMDYLR-------NRL------------- 165 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHH---HHHHHHH-------HHH-------------
Confidence 99999999886 889999999999988 788773322111 1111100 000
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
......+|.++...|++++|+..+++++...|+... ...+++.+|.++...|++++|..+++.+....|
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA-------TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 122346788999999999999999999998776411 278999999999999999999999888776655
No 82
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-14 Score=140.44 Aligned_cols=305 Identities=12% Similarity=0.048 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHRAH 335 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~ 335 (608)
-+..-|.-+++.|++...+.+|+.|++.-.++. .+|..+|.+|+.+++|++|+++-..-+.+ .-..+.+.
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 345578899999999999999999999887764 46889999999999999999876544332 12235567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh--------------------cHHHHHHH
Q 040048 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR--------------------DWNTLIQE 395 (608)
Q Consensus 336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~A~~~ 395 (608)
-+||..+..+|.|++|+.+..+-+. +...-........++++++.+|...| .++.|++.
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 7899999999999999999988876 66655566777888999999987654 34556666
Q ss_pred HHHHHHcCCCC-----hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048 396 TRAAIAGGADS-----APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED 470 (608)
Q Consensus 396 ~~~al~~~~~~-----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (608)
|..-+++.... ...++-.+|..|+-+|+|+.|+...+.-+.+.....+.- ..-.++.++|.++...|+++.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA----aeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA----AERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH----HHHHhhcccchhhhhhcccHh
Confidence 66555542211 124566778888888899998887776665543321111 125677888899999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHH
Q 040048 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------YNSVLLCNRAACRSK 544 (608)
Q Consensus 471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~ 544 (608)
|+++|++.+.+.-. +-.+...+.+.+.+|+.|.-..++++||.++.+-+.+.. ....+++.||..+-.
T Consensus 254 A~ehYK~tl~LAie------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIE------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred HHHHHHHHHHHHHH------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99998887654221 111222344556888999888999999998888776522 345678888999999
Q ss_pred cCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCC
Q 040048 545 LGQFEKAIEDCNAALNVR-----PG-YSKARLRRADCFAKIEK 581 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~~-----p~-~~~a~~~la~~~~~~g~ 581 (608)
+|..++|+.+.++.+++. +. ...+..++...-..+|.
T Consensus 328 lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 999999888888877652 22 23445566655555554
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.1e-14 Score=137.71 Aligned_cols=111 Identities=36% Similarity=0.636 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.++.+..-|.-+.+.++|.+|+..|.+||+++|.++.+|+++|.+|.++|+++.|++.++.+|.++|.+.++|.+||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 577 AKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
..+|++++|++.|+++++++|+|+..+..|.
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999999999999999999888764
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.59 E-value=3.9e-13 Score=139.46 Aligned_cols=276 Identities=13% Similarity=-0.040 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLE----AVFECREAIRIEPHYHRAHHR 337 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~~~~~ 337 (608)
...+..+..|..++..|++++|+..++++++.+|++..++.. +..+...|++.. +...+......+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 346778889999999999999999999999999999877775 656655555444 444444433567777888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC---hHHHHHHH
Q 040048 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS---APQIYALQ 414 (608)
Q Consensus 338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~l 414 (608)
+|.++...|++++|+..+++++. +.|++ ...+..++.++...|++++|+..+++++...|.. ....+..+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~-~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALE-LNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-hCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 99999999999999999999999 88888 5678889999999999999999999999987642 22456689
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH--HHHHHHHHHHcCCHHHHHHH--H-HHHHHhCCCChHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL--LVVRAQVNLACGRFEDALAA--I-QKAAKQDSNNKEVN 489 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~--~-~~al~~~p~~~~~~ 489 (608)
+.++...|++++|+..|++++...|.... .... ...+...+...|....+..+ + .......+......
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~ 265 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDP-------ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAF 265 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCCh-------HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchH
Confidence 99999999999999999998765552100 0111 00222333344433333332 1 11111112211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY---------NSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
.. ...+.++...|+.++|...++.+...... ........|.++...|++++|+..+..++.
T Consensus 266 ~~----------~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 266 ND----------LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HH----------HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 25778889999999999999887654322 245667889999999999999999999987
Q ss_pred cC
Q 040048 561 VR 562 (608)
Q Consensus 561 ~~ 562 (608)
+.
T Consensus 336 ~a 337 (355)
T cd05804 336 DL 337 (355)
T ss_pred HH
Confidence 63
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=9.3e-14 Score=135.16 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
....++.+|..+...|++++|+..|++++...|++.. ...+++.+|.++...|++++|+..|+++++..|+++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 4577888999999999999999999999998887421 146889999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCCHHHH-----------------HHHHHH
Q 040048 487 EVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAAYGDGLGLDPYNSVLL-----------------CNRAAC 541 (608)
Q Consensus 487 ~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~~~~-----------------~~la~~ 541 (608)
.... +++.+|.++... |++++|+..|++++..+|++...+ ..+|.+
T Consensus 105 ~~~~---------a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 105 DADY---------AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred chHH---------HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7422 224778888776 889999999999999999875432 467889
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 542 RSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 542 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|..+++.+....|+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999997764 689999999999999999999999988877764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.58 E-value=1e-13 Score=144.75 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL---- 527 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---- 527 (608)
+.++.+||.+|...|++++|..++++++++...... ....+....+..++.++..++++++|+.++.+++++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG----ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 677888899999999999999999988876543100 011122344568999999999999999999999876
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 528 ----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR--------PGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 528 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
++.-+..+.++|.+|..+|+|++|.++|++|+.+. +.....+..+|..|.+++++.+|...|..++.+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22346789999999999999999999999999874 334567889999999999999999999998875
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=4.8e-12 Score=133.99 Aligned_cols=311 Identities=18% Similarity=0.124 Sum_probs=222.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+.+.+.....++...|++++|++.++.....-.+...++-.+|.++..+|++++|...|...|..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35677888899999999999999999998888888999999999999999999999999999999999999999888887
Q ss_pred HHcC-----CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH-HHHHHHHHHHcCCCChHHHHHHHHH
Q 040048 343 LRLG-----EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT-LIQETRAAIAGGADSAPQIYALQAE 416 (608)
Q Consensus 343 ~~~g-----~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~la~ 416 (608)
.... ..+.-...|++... ..|...... .+...+..-..+.. +..++...+..+- |.++..+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~-~yp~s~~~~-------rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~ 151 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAE-KYPRSDAPR-------RLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKP 151 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHH-hCccccchh-------HhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHH
Confidence 4333 45666777776654 334321000 00000111122322 2233344444432 334444444
Q ss_pred HHHHcCChHHHHHHhhc---CCCC----CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048 417 ALLKLHKHQEADETLKN---GPNF----DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489 (608)
Q Consensus 417 ~~~~~g~~~eA~~~l~~---al~~----~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 489 (608)
+|....+.+-...++.. .++. ...+......+.....+++.+|..|...|++++|+.++++++...|..++.+
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44433222222222221 1111 1100000000111245778899999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C--
Q 040048 490 MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--Y-- 565 (608)
Q Consensus 490 ~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-- 565 (608)
. ..|.++...|++.+|..+++.|-.++..+-.+....+..+++.|+.++|.+.+..-...+-+ .
T Consensus 232 ~------------~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 232 M------------TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred H------------HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 6 89999999999999999999999999998888888999999999999999998877654421 1
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 566 -----SKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 566 -----~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
.......|.+|.+.|++..|++.|..+.+..
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1223467999999999999999999988764
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=2.1e-13 Score=127.79 Aligned_cols=128 Identities=18% Similarity=0.124 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-H
Q 040048 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR-S 543 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~-~ 543 (608)
.++.++++..++++++.+|++.+.|. .+|.++...|++++|+..|++++.++|+++.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~------------~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987 8999999999999999999999999999999999999975 6
Q ss_pred HcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 544 KLGQ--FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 544 ~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
..|+ +++|+..++++++.+|+++.+++.+|.+++..|++++|+.+|++++++.|.+.+-..
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 7787 599999999999999999999999999999999999999999999999988765443
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=6.3e-14 Score=124.47 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=116.6
Q ss_pred HHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048 428 DETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA 507 (608)
Q Consensus 428 ~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~ 507 (608)
...|+++++++|+ .+..+|.++...|++++|+..|++++..+|.+..++. .+|.+
T Consensus 13 ~~~~~~al~~~p~-------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~------------~lg~~ 67 (144)
T PRK15359 13 EDILKQLLSVDPE-------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI------------ALAGT 67 (144)
T ss_pred HHHHHHHHHcCHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHH
Confidence 3567777777764 2556899999999999999999999999999999886 89999
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 508 LFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 508 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
+...|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+..+|.+...+
T Consensus 68 ~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 68 WMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887654
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.3e-11 Score=125.98 Aligned_cols=344 Identities=14% Similarity=0.061 Sum_probs=207.9
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 040048 234 NHYNYNPPKPASSSSAEPTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL 311 (608)
Q Consensus 234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 311 (608)
..|..+-....++.++++...+..++. |.++.++...-.++.+.++|++|+...+.-....-. ....+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHc
Confidence 444444455555555555555555543 466666666666666666776666333321111111 11225666666777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 312 GRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 312 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
+..++|+.+++ ..++.+..+....|.+++++|+|++|++.|+..++ .+.++.......... +......+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~---a~~a~l~~---- 161 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLL---AVAAALQV---- 161 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHH---HHHHhhhH----
Confidence 77777776666 33445555666666777777777777777766655 222221111000000 00000000
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCC-----CcccccccCCCCcHHHHHHHHHHHHHcC
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFD-----VDETTRFFGPIGNANLLVVRAQVNLACG 466 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~~~~~~~~~~~~~~~~la~~~~~~g 466 (608)
. ..+.+...|++.-+.+++.|.++...|+|.+|++.+++++.+. .++.....-......+...++.++..+|
T Consensus 162 --~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 162 --Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred --H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 0 2233334456667889999999999999999999999993221 1110000000112567788999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHH-H------------------------------------HHHHHHHHHHHHHH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRK-A------------------------------------KGVAAARSNGNALF 509 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~-~------------------------------------~~~~~~~~lg~~~~ 509 (608)
+.++|...|...++.++.+.....+... + +.-..+.+.+.+.+
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877643322200 0 11223456666666
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 040048 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-SKARLRRADCFAKIEKWEASMQD 588 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~ 588 (608)
..+.-+.+.+...+.-...|....-.........+...+.+|++.+...-+..|.. ..+.+.++.+...+|+++.|++.
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 66766666666655555555543333334444444447999999999999999987 67889999999999999999999
Q ss_pred HHHH
Q 040048 589 YEIL 592 (608)
Q Consensus 589 ~~~a 592 (608)
+...
T Consensus 399 l~~~ 402 (652)
T KOG2376|consen 399 LSLF 402 (652)
T ss_pred HHHH
Confidence 9933
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-11 Score=122.99 Aligned_cols=360 Identities=13% Similarity=0.023 Sum_probs=248.3
Q ss_pred cccccccCCCcccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 040048 222 GNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY 300 (608)
Q Consensus 222 g~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 300 (608)
+.|+...++..-+++..++.+...+.+++|..+.+.-.. .......+..+.|+|+.+..++|+.+++ ..++.+..+
T Consensus 36 ~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~l 112 (652)
T KOG2376|consen 36 NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKL 112 (652)
T ss_pred HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHH
Confidence 333334456666777777777777666666544433221 1222233789999999999999999998 556667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------------------------C-CHHHHHHHHHHHHHcCCHH
Q 040048 301 RSNKTAALIALGRLLEAVFECREAIRIEP------------------------------H-YHRAHHRLANLYLRLGEVE 349 (608)
Q Consensus 301 ~~~la~~~~~~g~~~eA~~~~~~al~~~p------------------------------~-~~~~~~~la~~~~~~g~~~ 349 (608)
....|.+++++|+|++|+..|+..++-+. . ..+.+|+.|.++...|+|.
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~ 192 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYN 192 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHH
Confidence 89999999999999999999988755322 1 3456889999999999999
Q ss_pred HHHHHHHHhCC----C---CCch-hHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-------------
Q 040048 350 KAIYHFKHAGP----E---ADQV-DIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP------------- 408 (608)
Q Consensus 350 ~A~~~~~~al~----~---~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------- 408 (608)
+|++.+++++. . -+.. +........+...++.++..+|+..+|...|...+..++.+.+
T Consensus 193 qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 193 QAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALS 272 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhc
Confidence 99999999922 1 1111 2233445566788899999999999999999998887654321
Q ss_pred -----------------------------------HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 040048 409 -----------------------------------QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN 453 (608)
Q Consensus 409 -----------------------------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~ 453 (608)
.++.+.+.+.+..+.-+.+.+.........|.. ...
T Consensus 273 ~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~---------~~~ 343 (652)
T KOG2376|consen 273 KDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPES---------LFP 343 (652)
T ss_pred cccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchH---------HHH
Confidence 223334444445555566666655555555542 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------hh
Q 040048 454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD--------GL 525 (608)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~--------al 525 (608)
++...+...... .+.+|.+.+....+.+|.+..... ..++.+.+.+|+++.|+..+.. ..
T Consensus 344 ~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~-----------L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 344 ILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVL-----------LLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 333333333333 788899999998888888743322 2678899999999999999983 33
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 526 GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 526 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+. -..+.+...+-..+++.++-+.|...+.+|+. -.+.....+..++..-.+-|+-++|...+++.++.+|+
T Consensus 412 ~~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 412 EA-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred hh-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 32 22345555566667777776666666666654 23333445666777778889999999999999999999
Q ss_pred CHHHHHHh
Q 040048 599 DEEVDQAL 606 (608)
Q Consensus 599 ~~~~~~~L 606 (608)
+.++.-.|
T Consensus 491 d~~~l~~l 498 (652)
T KOG2376|consen 491 DTDLLVQL 498 (652)
T ss_pred hHHHHHHH
Confidence 99886554
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=7.6e-12 Score=146.11 Aligned_cols=328 Identities=13% Similarity=0.035 Sum_probs=241.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPN---------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-- 331 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-- 331 (608)
++......+.+++..|++++|..++..+....+. .......+|.++...|++++|...+++++...+..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 4555677788889999999999999998765322 12345667888899999999999999999855443
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC---
Q 040048 332 ---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD--- 405 (608)
Q Consensus 332 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--- 405 (608)
..++..+|.++...|++++|...+.+++. ..............+..++.++...|+++.|...+++++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~-~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQ-MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 23567789999999999999999999876 33322222233456678899999999999999999998875211
Q ss_pred --C--hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 406 --S--APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481 (608)
Q Consensus 406 --~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (608)
. ...++..+|.++...|++++|...+.+++......... .....+..+|.++...|++++|...+.++..+
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-----QQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 12345678899999999999999999988764321110 12566778999999999999999999999876
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
........... ..........+...|+.+.|..++.......+... ..+..+|.++...|++++|+..+++
T Consensus 642 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 642 LGNGRYHSDWI-----ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HhcccccHhHh-----hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44321100000 00000123445568999999999888765433222 2256789999999999999999999
Q ss_pred HHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 558 ALNVRP------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 558 al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
++.... ....++..+|.++...|+.++|...+.+++++.....-
T Consensus 717 al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 717 LNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 988632 23467889999999999999999999999998765443
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-14 Score=138.40 Aligned_cols=280 Identities=14% Similarity=0.069 Sum_probs=208.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048 305 TAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380 (608)
Q Consensus 305 a~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 380 (608)
|.-++++|+....+.+|+.+++...++ ..+|..||.+|+.+++|++|+++...-+. +...-.........--+++
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-lar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-LARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-HHHHhcchhcccccccccc
Confidence 677889999999999999999998777 34788999999999999999987654332 2111112233345566788
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHcCCh--------------------HHHHHHhhcCC
Q 040048 381 TDAKRTRDWNTLIQETRAAIAGG-----ADSAPQIYALQAEALLKLHKH--------------------QEADETLKNGP 435 (608)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~~al 435 (608)
..+.-+|.|++|+.+..+-+... .-....+++++|.+|...|+. +.|.++|..-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 88999999999998887766542 122346789999999987752 34455555544
Q ss_pred CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515 (608)
Q Consensus 436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~ 515 (608)
++..+..+.. ....++-++|..|+.+|+|+.|+...+.-+.+.....+- +..-.++.++|+++.-.|+++
T Consensus 183 ~l~~~lgDr~----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr------AaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 183 ELSEKLGDRL----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR------AAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHhhhHH----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH------HHHHHhhcccchhhhhhcccH
Confidence 4332211111 125667789999999999999999998877765443321 112235569999999999999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHH
Q 040048 516 EAAAAYGDGLGLD------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP------GYSKARLRRADCFAKIEKWE 583 (608)
Q Consensus 516 eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~ 583 (608)
.|+++|++.+.+. ...+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||..+-.+|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 9999999877542 22356778999999999999999999999887642 34678999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040048 584 ASMQDYEILKKE 595 (608)
Q Consensus 584 ~A~~~~~~al~l 595 (608)
+|+.+.++.+++
T Consensus 333 kAl~fae~hl~~ 344 (639)
T KOG1130|consen 333 KALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=5.7e-13 Score=146.79 Aligned_cols=275 Identities=10% Similarity=-0.035 Sum_probs=188.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.+.++|..+...+...+++++|+..++.+++..|+...+|+.+|.++.+.+++.+|... .++.+.+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------- 97 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--------
Confidence 677889999999999999999999999999999999999999999999999998877666 6666555443
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++ .+++++-..+. ..+.+ -.+++.+|.+|.++|+++++...|+++++.+|++ +.+...+|..|..
T Consensus 98 ------~~-~~ve~~~~~i~-~~~~~------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~ae 162 (906)
T PRK14720 98 ------KW-AIVEHICDKIL-LYGEN------KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSYEE 162 (906)
T ss_pred ------ch-hHHHHHHHHHH-hhhhh------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHHHH
Confidence 11 11112211111 01111 2244555555555555555555555555555544 5677778888888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA----- 495 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~----- 495 (608)
. +.++|+.++.+++. .++..+++.++.+++.+.+..+|++.+....+.+.
T Consensus 163 ~-dL~KA~~m~~KAV~------------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 163 E-DKEKAITYLKKAIY------------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred h-hHHHHHHHHHHHHH------------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 8 88888888877753 25666788888888888888888887764433221
Q ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 496 ---KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 496 ---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
+.+..+.-+=..|...++|++++.+++.+++++|.+..+...++.||. +.|.. ...|+..+++.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s---------- 284 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS---------- 284 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh----------
Confidence 223444555678888889999999999999999999999999998887 44443 44555554432
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 573 ADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 573 a~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.+--.-..+..|+..|++.+..++.+
T Consensus 285 -~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 285 -DIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred -ccccCCccHHHHHHHHHHHeeecCCC
Confidence 11111135677888888888777765
No 95
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.1e-10 Score=116.01 Aligned_cols=325 Identities=12% Similarity=0.021 Sum_probs=248.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+.+...|...|.--..++++..|...|++||..+..+...|...+.+-++......|...+++++.+-|.-...|+....
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
+-..+|+...|...|++-+. ..|+. .+|......-.+.+.++.|..+|++.+-..|+- ..|...+..-.+
T Consensus 150 mEE~LgNi~gaRqiferW~~-w~P~e-------qaW~sfI~fElRykeieraR~IYerfV~~HP~v--~~wikyarFE~k 219 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-WEPDE-------QAWLSFIKFELRYKEIERARSIYERFVLVHPKV--SNWIKYARFEEK 219 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-CCCcH-------HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH--HHHHHHHHHHHh
Confidence 99999999999999999998 88875 556666666677788888999998888777763 567777888888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHH---
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK--EVNMVMRKA--- 495 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~--- 495 (608)
.|...-|...|+.+++...++.. ...++...|..-..++.++.|...|+-++..-|.+. +.+..+...
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~-------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEE-------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 88888888888888876555321 244555666666777888888888888888777662 221111000
Q ss_pred ---------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHH
Q 040048 496 ---------------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-------LLCNRAAC 541 (608)
Q Consensus 496 ---------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~ 541 (608)
...++|+..-.+....|+.+.-.+.|++|+..-|.... +|..+-.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 01445566667777778889999999999887664321 22222222
Q ss_pred H---HHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 542 R---SKLGQFEKAIEDCNAALNVRPG----YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 542 ~---~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
+ ....+.+.+.+.|+.+|++-|. .+..|+..|....++.+...|.+.+-.|+-..|.+.-.
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF 440 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF 440 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence 2 3467888888888888888776 35667777777677766666666666666666665543
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.4e-11 Score=116.46 Aligned_cols=305 Identities=16% Similarity=0.115 Sum_probs=178.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 346 (608)
-..+|.|++..|+|++|+..|.-+...+.-+...+.++|.|++-+|.|.+|.....++ |+.+-....+-.+-.+++
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 3445666666666666666666665555445556666666666666666665544443 444444444444444455
Q ss_pred CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e 426 (608)
+-++-+. |...+. +..+-.+.++.+......|++||+.|.+.+..+|+.. .+...+|.+|.++.-++-
T Consensus 136 dEk~~~~-fh~~Lq----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~-alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 136 DEKRILT-FHSSLQ----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI-ALNVYMALCYYKLDYYDV 203 (557)
T ss_pred cHHHHHH-HHHHHh----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh-hhHHHHHHHHHhcchhhh
Confidence 4333332 222221 1234455666666677788999999999988877653 456677889999999999
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHH-----------
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMRK----------- 494 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~----------- 494 (608)
+.+.+.-.+...|+. .-+....+..+++.=+-..|.......... +...+.....++.
T Consensus 204 sqevl~vYL~q~pdS----------tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgA 273 (557)
T KOG3785|consen 204 SQEVLKVYLRQFPDS----------TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGA 273 (557)
T ss_pred HHHHHHHHHHhCCCc----------HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccH
Confidence 988888888888874 556666666665543333333333322221 1111111111110
Q ss_pred ------H--HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC-------------------
Q 040048 495 ------A--KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ------------------- 547 (608)
Q Consensus 495 ------~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------- 547 (608)
+ ...++..++...|..+++..+|+.++.. ++|..+.-+...|.++..+|+
T Consensus 274 LqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 274 LQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 0 1144556788888899999999887764 456666656666666655554
Q ss_pred ------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 548 ------------------------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 548 ------------------------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
|++.+.++...-...-++....+++|+++...|++.+|.+.|-+.-..+-.|.
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~ 427 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK 427 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh
Confidence 33333333333333344455667888888888888888888776654443333
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=2.3e-12 Score=141.41 Aligned_cols=137 Identities=12% Similarity=0.028 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+.++..+|.+....|++++|..+++.++++.|++..++. .++.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~------------~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI------------LMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 677777888888888888888888888888888777765 77777888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
+.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 888888888888888888888888888877777778888888888888888888888888877665443
No 98
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=128.35 Aligned_cols=103 Identities=40% Similarity=0.586 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
++.+...|+-++..++|.+|+..|.+||+++|.++.+|.+++.+|.++|.++.|++.++.+|.++|.+..+|.+||.+|+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhH
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDI 367 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~ 367 (608)
.+|++++|++.|+++|+ ++|++.
T Consensus 161 ~~gk~~~A~~aykKaLe-ldP~Ne 183 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE-LDPDNE 183 (304)
T ss_pred ccCcHHHHHHHHHhhhc-cCCCcH
Confidence 99999999999999999 999983
No 99
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=3.1e-12 Score=141.08 Aligned_cols=239 Identities=15% Similarity=0.065 Sum_probs=193.1
Q ss_pred hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048 292 SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371 (608)
Q Consensus 292 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 371 (608)
..+|.+..++..+...+...+++++|+..++.+++..|+...+|+.+|.++...+++.++... .++. ..+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-~~~~~----- 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID-SFSQN----- 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-hcccc-----
Confidence 457889999999999999999999999999999999999999999999999999998888766 6655 33333
Q ss_pred HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCc
Q 040048 372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGN 451 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~ 451 (608)
.+| .++.++...+...+.+ ..++..+|.||-++|++++|...|+++++.+|++
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~-k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------- 149 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGEN-KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------- 149 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhh-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc----------
Confidence 345 4444444444333443 3588999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+.++.++|..|... +.++|+.++.+|+.. +...++|.++..++.+.+..+|++
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 99999999999999 999999999998764 334457777777777777777765
Q ss_pred HHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 532 SVL--------------------LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI 591 (608)
Q Consensus 532 ~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 591 (608)
... +.-+=.+|...++|++++..++.+++.+|++..+...++.||. +.|.. ...|+.
T Consensus 203 ~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee 279 (906)
T PRK14720 203 FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLED 279 (906)
T ss_pred chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHH
Confidence 433 3334478888999999999999999999999999999999998 44443 455555
Q ss_pred HHHh
Q 040048 592 LKKE 595 (608)
Q Consensus 592 al~l 595 (608)
++++
T Consensus 280 ~l~~ 283 (906)
T PRK14720 280 YLKM 283 (906)
T ss_pred HHHH
Confidence 5553
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=5.4e-13 Score=117.65 Aligned_cols=121 Identities=21% Similarity=0.340 Sum_probs=113.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
+.|++++..+|++..... .+|..+...|++++|+..|++++..+|.++.++..+|.++..+|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIY------------ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999877654 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
.+|++++..+|+++..++.+|.++...|++++|+..|+++++++|++......
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999885543
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.8e-11 Score=116.09 Aligned_cols=340 Identities=12% Similarity=0.033 Sum_probs=214.3
Q ss_pred CCCCCcchhHHHHhhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CC------------
Q 040048 244 ASSSSAEPTSLCRALSTR--MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------------DP------------ 295 (608)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------------~p------------ 295 (608)
..+.+++|...+..+... .+++.+.++|.+++-.|.|.+|...-.++-+. +.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 345556777777777554 45788999999999999999999988776321 10
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH-HH
Q 040048 296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS-LQ 374 (608)
Q Consensus 296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~-~~ 374 (608)
+..+-...+|.+.+..-.|++|++.|.+++.-+|+.......+|.||+++.-|+-+.+.+.-.++ .-|+....... +-
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-q~pdStiA~NLkac 227 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-QFPDSTIAKNLKAC 227 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-hCCCcHHHHHHHHH
Confidence 01122355666677777899999999999999999999999999999999999999888888777 55555322111 11
Q ss_pred HHHHH----hHHHHH-----hhc--HHHHHHHHH----------HHHHcCC---CChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 375 AHLNK----CTDAKR-----TRD--WNTLIQETR----------AAIAGGA---DSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 375 ~~~~~----~~~~~~-----~~~--~~~A~~~~~----------~al~~~~---~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
.++.+ ...... .++ |..+....+ -++..-| +..|++..+++..|+..++.++|+..
T Consensus 228 n~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 228 NLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred HHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHH
Confidence 11111 000000 000 111111111 0111111 23467888899999999999999998
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCh-------------HHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA---AKQDSNNK-------------EVNMVMRK 494 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~-------------~~~~~l~~ 494 (608)
.+.. +|.. +.-+...|.++...|+--...++++-+ +.+-.... .......+
T Consensus 308 ~Kdl---~Ptt----------P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 308 CKDL---DPTT----------PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred Hhhc---CCCC----------hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHH
Confidence 8765 4442 666777888888888754444444333 22221111 11111111
Q ss_pred H-------HHHHHH--------HHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 495 A-------KGVAAA--------RSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 495 ~-------~~~~~~--------~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
. ..+.+| ++++.++...|+|.+|.+.|-+.-..+- +.......||.||...|..+-|...+-+.
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 1 112222 5678888888888888888877655442 33445557888888888888887776543
Q ss_pred HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 559 LNVRPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 559 l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
- .|.. ...+..+|..+++.+++--|.+.|...-.++|+-
T Consensus 455 ~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 455 N--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred C--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 1 2222 2334456777788888888888888888888753
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=7.3e-12 Score=117.38 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=130.9
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
.-...|...|+|+......++... +. .-+...++.++++..+++++..+|++ ...|..
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~--~~----------~~~~~~~~~~~~i~~l~~~L~~~P~~----------~~~w~~ 78 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD--PL----------HQFASQQTPEAQLQALQDKIRANPQN----------SEQWAL 78 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC--cc----------ccccCchhHHHHHHHHHHHHHHCCCC----------HHHHHH
Confidence 345567788888876544432221 11 01123677899999999999999986 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHhhcCCCCCHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL-FKQAK--FSEAAAAYGDGLGLDPYNSVL 534 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~-~~~g~--~~eA~~~~~~al~~~p~~~~~ 534 (608)
+|.+|...|++++|+..|++++.+.|++..++. .+|.++ ...|+ +++|...++++++.+|++..+
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 999999999999999999999999999999986 888875 67777 599999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
++.+|.++...|++++|+.+|++++++.|.+..
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999887643
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=7e-12 Score=115.41 Aligned_cols=173 Identities=17% Similarity=0.083 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
.++.....+.+..++.+-|..++++.....|.. ..+....|..+...|++++|+++|+..++-+|.+..+
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S----------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS----------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC----------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 344444555555566666666665555544542 4555555666666666666666666666666665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 568 (608)
+. ..-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-|+++++-+.|-++..
T Consensus 123 ~K------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~ 190 (289)
T KOG3060|consen 123 RK------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY 190 (289)
T ss_pred HH------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH
Confidence 43 233344445555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 040048 569 RLRRADCFAKIE---KWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 569 ~~~la~~~~~~g---~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
+..+|.+++-+| +++-|.++|.++++++|.+-..+
T Consensus 191 f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 191 FQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 666666655554 44556666666666666544443
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=2.8e-10 Score=111.64 Aligned_cols=300 Identities=17% Similarity=0.146 Sum_probs=219.9
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHH
Q 040048 234 NHYNYNPPKPASSSSAEPTSLCRALST-RMDPE-TLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIA 310 (608)
Q Consensus 234 ~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~ 310 (608)
..-..++.....|++..|+.+...... ...|. .+..-+...-.+|+++.|-.++.++-+..+++ ......++.++..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 333344444456666667776666533 23344 45555677788999999999999999985554 4567888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC--CCchhHHHHHHHHHHHHHhHHHHHhhc
Q 040048 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE--ADQVDIAKAKSLQAHLNKCTDAKRTRD 388 (608)
Q Consensus 311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (608)
.|+++.|.....++++..|.++.+......+|...|++.+....+.+.-+. +.+... ....-.++..+-.....-+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-ARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-HHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999888776441 122221 11111222222222222222
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH
Q 040048 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF 468 (608)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 468 (608)
-+......+.. ...-...+.+...++.-+..+|++++|.++.+++++..-+ ..+...++ ...-+++
T Consensus 245 ~~gL~~~W~~~-pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----------~~L~~~~~--~l~~~d~ 310 (400)
T COG3071 245 SEGLKTWWKNQ-PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----------PRLCRLIP--RLRPGDP 310 (400)
T ss_pred chHHHHHHHhc-cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----------hhHHHHHh--hcCCCCc
Confidence 22211122211 1111233567788899999999999999999999987655 34222222 2467889
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH
Q 040048 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548 (608)
Q Consensus 469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 548 (608)
..=++..++.++..|+++..+. .+|..+++.+.|.+|..+|+.+++..|. ...+..+|.++.++|+.
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~------------tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLS------------TLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP 377 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHH------------HHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence 9999999999999999997775 8999999999999999999999999775 77888999999999999
Q ss_pred HHHHHHHHHHHhc
Q 040048 549 EKAIEDCNAALNV 561 (608)
Q Consensus 549 ~~A~~~~~~al~~ 561 (608)
.+|.+++++++.+
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999854
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.45 E-value=4.1e-12 Score=125.80 Aligned_cols=261 Identities=21% Similarity=0.228 Sum_probs=177.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 273 EDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA 351 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 351 (608)
.++-.|+|..++.-++ ....++. .......+.++++.+|+++..+......- .| ...+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHHHhCccchHHH
Confidence 3455677777776555 2222222 23445666777777777766554443321 22 234445555555444455555
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048 352 IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL 431 (608)
Q Consensus 352 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l 431 (608)
+..++..+.... ....+.+....|.++...|++++|+..+
T Consensus 86 l~~l~~~~~~~~----------------------------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~l 125 (290)
T PF04733_consen 86 LEELKELLADQA----------------------------------------GESNEIVQLLAATILFHEGDYEEALKLL 125 (290)
T ss_dssp HHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_pred HHHHHHHHHhcc----------------------------------------ccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555443111 1112345566678888889999999988
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ 511 (608)
Q Consensus 432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 511 (608)
.+.- +.+.......+++..++++.|.+.++.+.+.+.+..-... ..+++.+..
T Consensus 126 ~~~~---------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~ 178 (290)
T PF04733_consen 126 HKGG---------------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLAT 178 (290)
T ss_dssp TTTT---------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHH
T ss_pred HccC---------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHh
Confidence 7751 2777788889999999999999999998877666443322 334444444
Q ss_pred C--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 040048 512 A--KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW-EASMQD 588 (608)
Q Consensus 512 g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A~~~ 588 (608)
| ++.+|..+|++..+..+..+..++.+|.++..+|+|++|.+.+++++..+|++++++.+++.+...+|+. +.+.++
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4 6899999999988888888999999999999999999999999999999999999999999999999998 667788
Q ss_pred HHHHHHhCCCCHHHHH
Q 040048 589 YEILKKEAPDDEEVDQ 604 (608)
Q Consensus 589 ~~~al~l~P~~~~~~~ 604 (608)
+.++...+|+++-+..
T Consensus 259 l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 259 LSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHCHHHTTTSHHHHH
T ss_pred HHHHHHhCCCChHHHH
Confidence 8888889999886543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=5.8e-12 Score=131.45 Aligned_cols=220 Identities=17% Similarity=0.134 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY 411 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 411 (608)
......++.++...|-...|+..|++ +..+-....+|...|+..+|.....+-++.+|+ +.+|
T Consensus 398 Wq~q~~laell~slGitksAl~I~Er---------------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~~ly 460 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFER---------------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD--PRLY 460 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHh---------------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--chhH
Confidence 44567899999999999999999998 455677788899999999999999998885554 4678
Q ss_pred HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
..+|++.....-|++|.++.+..- +.+...+|......++|+++..+++..++++|-....|+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~s----------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf- 523 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYIS----------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF- 523 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhh----------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH-
Confidence 888888877777788877766543 556677777788899999999999999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
.+|.+..+.++++.|.++|.+++.++|++.++|++++..|.++|+-.+|...+++|++.+-++...|.+
T Consensus 524 -----------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 524 -----------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred -----------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence 899999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 572 RADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 572 la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
.-.+....|.+++|++.|.+.+.+.
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.9e-11 Score=113.77 Aligned_cols=178 Identities=20% Similarity=0.148 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048 391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED 470 (608)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (608)
.+...+-.....+|++. .+ ..++..+...|+-+.+..+..++....|.+ ..++..+|...+..|++.+
T Consensus 51 ~a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d----------~~ll~~~gk~~~~~g~~~~ 118 (257)
T COG5010 51 GAAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYPKD----------RELLAAQGKNQIRNGNFGE 118 (257)
T ss_pred HHHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCccc----------HHHHHHHHHHHHHhcchHH
Confidence 35555666666777764 44 888999999999999999999988888875 7777779999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
|+..++++..+.|++.++|. .+|.+|.+.|++++|...|.+++++.|.++.+..|+|..|.-.|+++.
T Consensus 119 A~~~~rkA~~l~p~d~~~~~------------~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 119 AVSVLRKAARLAPTDWEAWN------------LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HHHHHHHHhccCCCChhhhh------------HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 99999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
|..++..+....+.+..+..+|+.+...+|++++|...-.+-
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999999989999999999999999999998876543
No 108
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=9.7e-10 Score=109.45 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.+...|...+.+-++......|..++++|+.+-|.-...|+....+-..+|+...|.+.|++-++..|+ ..+|......
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~f 183 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKF 183 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 456789999999999999999999999999999999899999998889999999999999999999886 4788888888
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHHHHHHHHHHH
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA--PQIYALQAEALL 419 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~la~~~~ 419 (608)
-.+..+.+.|...|++.+- ..|. +..++..+..-.+.|....+...|+++++.-.++. ..++...|..-.
T Consensus 184 ElRykeieraR~IYerfV~-~HP~-------v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVL-VHPK-------VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHhhHHHHHHHHHHHHhe-eccc-------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 8888888889999988876 5554 45566666666666777777777777776543332 233444455555
Q ss_pred HcCChHHHHHHhhcCCCCCCccccc-----------ccC-----------------------CCCcHHHHHHHHHHHHHc
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTR-----------FFG-----------------------PIGNANLLVVRAQVNLAC 465 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~-----------~~~-----------------------~~~~~~~~~~la~~~~~~ 465 (608)
.++.++.|..+|+-++..-|.+... -++ ..-+..+|+..-.+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 5666666666666666655553110 000 113467777788888888
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------------------------------HHHHHHHHHHHHHH
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKA------------------------------------KGVAAARSNGNALF 509 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~------------------------------------~~~~~~~~lg~~~~ 509 (608)
|+.+.-.+.|++|+...|...+-...-+.+ .-+..|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 999999999999988777643221111100 00222333333444
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 589 (608)
++.+...|.+.+..|+..+|.+ .++-....+-.++++++.....|++-|+..|.+..+|...|.+-..+|+.+.|...|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444444444444444432 222223333344455555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 040048 590 EILKK 594 (608)
Q Consensus 590 ~~al~ 594 (608)
+-|+.
T Consensus 495 elAi~ 499 (677)
T KOG1915|consen 495 ELAIS 499 (677)
T ss_pred HHHhc
Confidence 54443
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.41 E-value=4.4e-12 Score=110.54 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
+..+.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC---CCCHHHH
Q 040048 579 IEKWEASMQDYEILKKEA---PDDEEVD 603 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~---P~~~~~~ 603 (608)
.|+.+.|++.|+.++... |.+..++
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 999999999999999987 4444443
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=6.5e-11 Score=109.09 Aligned_cols=182 Identities=16% Similarity=0.075 Sum_probs=159.5
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA 452 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~ 452 (608)
...+-.........+..+.|..++.......|.+ ..+..+.|..+...|.+++|+++|+..++-+|.+ .
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----------~ 120 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD----------T 120 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch----------h
Confidence 3444455666777888999999999988888776 5788888999999999999999999999999985 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 532 (608)
.++...--+.-.+|+.-+|++.+...++..+.+.++|. .++.+|...|+|++|.-+|++.+-+.|.++
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 66777777788899999999999999999999999997 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 533 VLLCNRAACRSKLG---QFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 533 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+..
T Consensus 189 l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999999998877 5678999999999999988888877655543
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.2e-10 Score=123.42 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=196.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 040048 297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH 376 (608)
Q Consensus 297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 376 (608)
+.+++.....++...|++++|++++++....-.+...+.-..|.++..+|++++|...|...+. .+|++......+...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-RNPDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHHH
Confidence 3567788889999999999999999999888888899999999999999999999999999999 999984333332222
Q ss_pred HHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH-HHHHhhcCCCCCCcccccccCCCCcHHHH
Q 040048 377 LNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE-ADETLKNGPNFDVDETTRFFGPIGNANLL 455 (608)
Q Consensus 377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e-A~~~l~~al~~~p~~~~~~~~~~~~~~~~ 455 (608)
...-. -....+.......|+......|..... ..+...+..-..+.. +..++...+... .+.++
T Consensus 82 ~g~~~-~~~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------------vPslF 146 (517)
T PF12569_consen 82 LGLQL-QLSDEDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKG------------VPSLF 146 (517)
T ss_pred Hhhhc-ccccccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcC------------CchHH
Confidence 21111 011224566677777777777654321 111111111122322 233334444321 25566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---C----------CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 456 VVRAQVNLACGRFEDALAAIQKAAKQ---D----------SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG 522 (608)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~---~----------p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 522 (608)
..+-.+|....+..-....+...... . ...+... +.+++.++..|...|++++|+.+.+
T Consensus 147 ~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~--------lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 147 SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL--------LWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH--------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66666665444333333333332221 1 1112221 2345689999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
++|+..|..++.|...|.++-..|++.+|.++++.|-.+++.+-......+..+.+.|+.++|.+.+....+.+
T Consensus 219 ~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 219 KAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999998888899999999999999999888776554
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.37 E-value=1.1e-10 Score=108.82 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCC
Q 040048 283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA 362 (608)
Q Consensus 283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 362 (608)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..+.++.. +
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-L 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-c
Confidence 445555555666666666 66666666666666666666666666666666666666666666666666666666665 5
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccc
Q 040048 363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDET 442 (608)
Q Consensus 363 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 442 (608)
.|++
T Consensus 130 ~p~d---------------------------------------------------------------------------- 133 (257)
T COG5010 130 APTD---------------------------------------------------------------------------- 133 (257)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5544
Q ss_pred ccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 443 TRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG 522 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 522 (608)
.++|..+|.+|.+.|++++|...|.+++++.|.++.+.. ++|..+.-.|+++.|..++.
T Consensus 134 ---------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n------------Nlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 134 ---------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN------------NLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred ---------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh------------hHHHHHHHcCCHHHHHHHHH
Confidence 566666777777777777777777777777777766665 66777777777777777777
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 523 DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 523 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
++....+.+..+..+++.+....|++++|.....+
T Consensus 193 ~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 193 PAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 77666666667777777777777777776665544
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=8.4e-11 Score=129.15 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
..++.++|.+....|++++|...++.++++.|++ ..++..++.++.+.+++++|+..+++++..+|++..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----------SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 4566667777777777777777777777777764 788888999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
... .+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus 156 ~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 156 EIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 876 88899999999999999999999888888999999999999999999999999999988766555
Q ss_pred HH
Q 040048 568 AR 569 (608)
Q Consensus 568 a~ 569 (608)
.|
T Consensus 224 ~~ 225 (694)
T PRK15179 224 KL 225 (694)
T ss_pred HH
Confidence 54
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2.2e-11 Score=107.30 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=109.8
Q ss_pred HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508 (608)
Q Consensus 429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~ 508 (608)
..|++++..+|++ ..+.+.+|..+...|++++|+..+++++..+|.+..++. .+|.++
T Consensus 4 ~~~~~~l~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------~la~~~ 61 (135)
T TIGR02552 4 ATLKDLLGLDSEQ----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWL------------GLAACC 61 (135)
T ss_pred hhHHHHHcCChhh----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHH
Confidence 3566777778774 788999999999999999999999999999999988886 899999
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
...|++++|+.+|++++..+|+++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999999999999999999999999886643
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=2.3e-11 Score=127.04 Aligned_cols=222 Identities=14% Similarity=0.055 Sum_probs=147.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|+.+..-..+|..++..|-...|+..|++ ...|-....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 55566677889999999999999999987 36677788899999999999999999888 6777888888888
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
+....--|++|.+..+..-. .+...++......++|.++.++++..++++|-. ...|+.+|.+..+
T Consensus 466 v~~d~s~yEkawElsn~~sa-------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA-------------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQ 531 (777)
T ss_pred hccChHHHHHHHHHhhhhhH-------------HHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHH
Confidence 88877778888877765422 233334444444566666666666666665544 3455555555555
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
+++++.|...|..++.++|+. .++|.+++..|+..++-.+|...+.++++.+-++..+|.
T Consensus 532 lek~q~av~aF~rcvtL~Pd~----------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE---------- 591 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDN----------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE---------- 591 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCc----------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee----------
Confidence 566666666665555555553 555555555555555555565555555555555555554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
+.-.+..+.|.+++|+..|.+.+.+
T Consensus 592 --Nymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 592 --NYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred --chhhhhhhcccHHHHHHHHHHHHHh
Confidence 3344555555556665555555544
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=2e-11 Score=106.44 Aligned_cols=100 Identities=21% Similarity=0.110 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+.+-+.++.+|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCC
Q 040048 341 LYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~ 360 (608)
|++..|+.+.|++.|+.++.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999987
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=4.3e-11 Score=122.91 Aligned_cols=105 Identities=29% Similarity=0.487 Sum_probs=101.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
...|..++..|+|++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.++++++.++|+++.+|+.+|.+|..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 582 WEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+++|+..|+++++++|++..+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999987655
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.6e-09 Score=101.92 Aligned_cols=293 Identities=12% Similarity=0.012 Sum_probs=213.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY 353 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 353 (608)
+.+..+|++|++++..-.+..|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..+..++..+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048 354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-DSAPQIYALQAEALLKLHKHQEADETLK 432 (608)
Q Consensus 354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~la~~~~~~g~~~eA~~~l~ 432 (608)
....... . +.-. -...-..+.+....+|+..+.... +.-| ..........|.+..+.|++++|..-|+
T Consensus 100 V~~~~~D-~-~~L~-----~~~lqLqaAIkYse~Dl~g~rsLv----eQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 100 VAFLLLD-N-PALH-----SRVLQLQAAIKYSEGDLPGSRSLV----EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHhcC-C-HHHH-----HHHHHHHHHHhcccccCcchHHHH----HhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 9887654 1 2111 111122223333445555444333 3334 3556788889999999999999999999
Q ss_pred cCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--------hHHH-----HHHHHH
Q 040048 433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD----SNN--------KEVN-----MVMRKA 495 (608)
Q Consensus 433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--------~~~~-----~~l~~~ 495 (608)
.+++...- ++.+-++++.+++..++++.|+++..++++.. |.- +++. ..+...
T Consensus 169 aAlqvsGy----------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 169 AALQVSGY----------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHhhcCC----------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 99987553 26778889999999999999999988887632 221 1111 111222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
..+++++..+-++++.++++.|.+.+...--... -++..+.+++..- ..+++.+...-+.-.+.++|--.+.+-++-
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 3466778889999999999999887654432211 2456667776543 345666667777777777776566777777
Q ss_pred HHHHHcCCHHHHHHH
Q 040048 574 DCFAKIEKWEASMQD 588 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~ 588 (608)
.+|.+..-|+-|.+.
T Consensus 318 llyCKNeyf~lAADv 332 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADV 332 (459)
T ss_pred HHHhhhHHHhHHHHH
Confidence 777776666655543
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=5.6e-09 Score=122.13 Aligned_cols=319 Identities=13% Similarity=-0.029 Sum_probs=218.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAI-SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH---------YHRAHH 336 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------~~~~~~ 336 (608)
+...|..+...|++..+..++..+- .....++.....++.++...|++++|...+..+....+. ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 3334555555666665555544320 111223445567788888999999999999988764321 133556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----ChHHHH
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD-----SAPQIY 411 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~ 411 (608)
.++.++...|++++|...+++++. ..+... ..........++..+...|+++.|...+.+++..... .....+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~-~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALA-ELPLTW-YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-cCCCcc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 678899999999999999999986 333321 1223345567888889999999999999999865321 123456
Q ss_pred HHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 412 ALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 412 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
..+|.++...|++++|...+++++......... .......++..+|.++...|++++|...+.+++..........
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-- 610 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE--QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ-- 610 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--
Confidence 778999999999999999999887653221000 0000134466789999999999999999999988654321111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLC----NRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
.+..+..+|.++...|++++|...+.++..+.... ..... .....+...|+.+.|..++.......+.
T Consensus 611 -----~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 685 (903)
T PRK04841 611 -----QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA 685 (903)
T ss_pred -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence 11234478999999999999999999997653221 11111 1234556689999999998876653322
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 565 YS----KARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 565 ~~----~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
.. ..+..+|.++...|++++|...+++++...
T Consensus 686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 225688999999999999999999999863
No 120
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.22 E-value=3.1e-10 Score=97.33 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRA 573 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la 573 (608)
.++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++...|++ +.+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45689999999999999999999999998876 5789999999999999999999999999998885 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 574 DCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.++..+|++++|+.+|+++++..|++..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999999999999999999999999999887664
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=3.2e-10 Score=116.48 Aligned_cols=114 Identities=24% Similarity=0.283 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL 534 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 534 (608)
+...|..++..|++++|+..|.+++.++|++..++. .+|.++...|++++|+..+++++.++|.++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~------------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA------------DRAQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 566789999999999999999999999999988876 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
|+.+|.++..+|++++|+..|++++.++|++..+...++.|..++.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876663
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=4.5e-10 Score=111.36 Aligned_cols=234 Identities=19% Similarity=0.194 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP--HYHRAHHRLAN 340 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~ 340 (608)
+.+..+.+.+++..+|+++..+.-... ..+....+...++..+...++.+.++..++..+.... .++......|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 355678889999999999877654433 2222344556666666555677778877776654332 34456667778
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++...|++++|++.+.+.-. .+.......+++.
T Consensus 111 i~~~~~~~~~AL~~l~~~~~-----------------------------------------------lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGGS-----------------------------------------------LELLALAVQILLK 143 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTTC-----------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHccCc-----------------------------------------------ccHHHHHHHHHHH
Confidence 88888999999987765422 2445556778888
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 498 (608)
+++++.|.+.++.+.+.+.+. .-+.+..+++.+..| ++.+|.-.|++.....+..+....
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln-------- 205 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDS----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLN-------- 205 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCH----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH--------
T ss_pred cCCHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHH--------
Confidence 888888888888877776653 444445555665555 589999999998777766665554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF-EKAIEDCNAALNVRPGYSKA 568 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a 568 (608)
.++.++..+|+|++|...+.+++..+|.++.++.+++.+...+|+. +.+.+++.+....+|+++..
T Consensus 206 ----g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 206 ----GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp ----HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred ----HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 8899999999999999999999999999999999999999999998 66778888888889998754
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=5.2e-09 Score=105.56 Aligned_cols=159 Identities=25% Similarity=0.270 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.-+.++|..+..++..|++++|+..++..+...|+++.++...+.++...++..+|++.+++++.++|+....+..+|..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|...|++.+|+..++..+. -+|++ +..|..++..|..+
T Consensus 384 ll~~g~~~eai~~L~~~~~-~~p~d-----------------------------------------p~~w~~LAqay~~~ 421 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF-NDPED-----------------------------------------PNGWDLLAQAYAEL 421 (484)
T ss_pred HHhcCChHHHHHHHHHHhh-cCCCC-----------------------------------------chHHHHHHHHHHHh
Confidence 5555555555555555554 44444 57888888888888
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 489 (608)
|+..+| ....+..|...|++++|+..+..+.+...-+...|
T Consensus 422 g~~~~a---------------------------~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 422 GNRAEA---------------------------LLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred CchHHH---------------------------HHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 875444 44467778888999999999999888774444333
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3e-09 Score=100.12 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=202.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048 308 LIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR 387 (608)
Q Consensus 308 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (608)
+++..+|..|++++..-.+..|.+..++..||.||+...+|..|..+|++.-. +.|.. ....+..+....+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q-l~P~~------~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ-LHPEL------EQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hChHH------HHHHHHHHHHHHHhc
Confidence 36778999999999999999999999999999999999999999999999877 66765 455555667777788
Q ss_pred cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048 388 DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467 (608)
Q Consensus 388 ~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (608)
.+.+|+.....+... +........+.+-+....+++..+....++....+ .+....+.|.+.++.|+
T Consensus 93 i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en------------~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN------------EADGQINLGCLLYKEGQ 159 (459)
T ss_pred ccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC------------ccchhccchheeecccc
Confidence 888888877665543 43344566677778888889988888888776322 37788889999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCC------------
Q 040048 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----DPYN------------ 531 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~------------ 531 (608)
++.|++-|+.+++...-++..-. +++.++++.++++.|+++..+.++. .|..
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAY------------niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr 227 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAY------------NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR 227 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHH------------HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence 99999999999998877776654 8999999999999999988777653 3321
Q ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 532 -------------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG-----YSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 532 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
.++++..+.++++.|+++.|.+.+.. +-|. ++..+.+++..-. .+++.+..+-+.-.+
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL 303 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence 35677788899999999998876643 3332 4566777765433 466777777788888
Q ss_pred HhCCCCHHHH
Q 040048 594 KEAPDDEEVD 603 (608)
Q Consensus 594 ~l~P~~~~~~ 603 (608)
+++|--++..
T Consensus 304 ~~nPfP~ETF 313 (459)
T KOG4340|consen 304 QQNPFPPETF 313 (459)
T ss_pred hcCCCChHHH
Confidence 8888555543
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=1.6e-07 Score=97.18 Aligned_cols=322 Identities=15% Similarity=0.119 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI----------------- 327 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------------- 327 (608)
.+|-..-......|-.+-++..|++.|+.+|... ......+...+++++|.+.+...+..
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 3444444444445555566666666666665542 33344556677777777776665432
Q ss_pred -------CCCC---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc-hhHHHHHHH-----
Q 040048 328 -------EPHY---------------------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ-VDIAKAKSL----- 373 (608)
Q Consensus 328 -------~p~~---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p-~~~~~~~~~----- 373 (608)
+|+. ...|..||..|.+.|.+++|...|++++...-. .+.......
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence 2211 336889999999999999999999998762211 111110000
Q ss_pred -------------------------------HHHHHHhHHH---------------------HHhhcHHHHHHHHHHHHH
Q 040048 374 -------------------------------QAHLNKCTDA---------------------KRTRDWNTLIQETRAAIA 401 (608)
Q Consensus 374 -------------------------------~~~~~~~~~~---------------------~~~~~~~~A~~~~~~al~ 401 (608)
+.+.++..++ ...++..+-+..|.+++.
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH
Confidence 0011111110 112445555666666664
Q ss_pred c-CC----CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 402 G-GA----DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ 476 (608)
Q Consensus 402 ~-~~----~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (608)
. +| .....+|..+|..|...|+.+.|...|+++.+..-...+ ..+.+|...|..-++..+++.|+.+++
T Consensus 376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~------dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE------DLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH------HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3 33 344578999999999999999999999999987533221 237899999999999999999999999
Q ss_pred HHHHhCCCCh--------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH
Q 040048 477 KAAKQDSNNK--------EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF 548 (608)
Q Consensus 477 ~al~~~p~~~--------~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 548 (608)
++...-.... .+.. +..+.+..|...+......|-++.-...|++.+++.--.|....+.|..+....-+
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~--rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQA--RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF 527 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHH--HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH
Confidence 9876432211 1111 11234555667777888888888888888888888777788888888888888888
Q ss_pred HHHHHHHHHHHhcC--CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 549 EKAIEDCNAALNVR--PGYSKARLR---RADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 549 ~~A~~~~~~al~~~--p~~~~a~~~---la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
++|.+.|++.+.+. |...+.|.. ....-+.--+.+.|...|++|++..|
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 88888888888874 444455532 22223333467888888888888877
No 126
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.16 E-value=1.5e-09 Score=108.10 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 452 ANLLVVRAQVNLAC-GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 452 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
+..+..+|.+|... |++++|+++|++++.+......... ....+..+|.++...|+|++|+..|++.....-+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 56667789999998 9999999999999987544332221 2334568999999999999999999999875322
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Q 040048 531 N-------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-----KARLRRADCFAK--IEKWEASMQDYEILKKEA 596 (608)
Q Consensus 531 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~--~g~~~~A~~~~~~al~l~ 596 (608)
+ ...++..+.|++..|++..|...|++....+|... .....|-.++.. ...+.+|+..|....+++
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 1 24567788899999999999999999999998653 333444444433 457889999998888887
Q ss_pred CCCHHHHHH
Q 040048 597 PDDEEVDQA 605 (608)
Q Consensus 597 P~~~~~~~~ 605 (608)
|--..+...
T Consensus 268 ~w~~~~l~~ 276 (282)
T PF14938_consen 268 NWKTKMLLK 276 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 755544433
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=7.1e-08 Score=99.78 Aligned_cols=316 Identities=14% Similarity=0.109 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhHH-----HHHHHHHHHcC-------------CHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDP---NKASYR-----SNKTAALIALG-------------RLLEAVFECRE 323 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~-----~~la~~~~~~g-------------~~~eA~~~~~~ 323 (608)
-.|..||..|.+.|.|++|...|++++..-- +...++ +.-..+-..++ +.+-....|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 4688999999999999999999999997532 222111 11111111111 23334445555
Q ss_pred HHh------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 324 AIR------------IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 324 al~------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
.+. .+|++..-|.....+ ..|+..+-+..|.+++..++|... ....-..+...+..|...|+.+.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka-~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKA-VGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccC-CCChhhHHHHHHHHHHhcCcHHH
Confidence 443 467777777665554 468899999999999887887653 33345677888999999999999
Q ss_pred HHHHHHHHHHcCCC---ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCC--------CCcHHHHHHHHH
Q 040048 392 LIQETRAAIAGGAD---SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP--------IGNANLLVVRAQ 460 (608)
Q Consensus 392 A~~~~~~al~~~~~---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~--------~~~~~~~~~la~ 460 (608)
|...++++....-. +...+|..-|..-+...+++.|+.+++.+...-......+++. .....+|..++.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 99999999987543 3467889999999999999999999999886533312122221 134678888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CCCHHHHHHH
Q 040048 461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--PYNSVLLCNR 538 (608)
Q Consensus 461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l 538 (608)
+....|-++.....|++++.+.--.+.... +.|..+....-++++.+.|++.+.+. |...++|...
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~------------NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIII------------NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHH------------HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 999999999999999999998777777665 77888888888999999999999874 3444555432
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 539 ---AACRSKLGQFEKAIEDCNAALNVRPGY-S-KARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 539 ---a~~~~~~g~~~~A~~~~~~al~~~p~~-~-~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
....+.--..+.|...|++|++..|.. . ..|+..|.+-.+-|--..|+..|++|-.-
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 222233346889999999999988742 2 34455666666677777777777776543
No 128
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.16 E-value=3.8e-09 Score=101.99 Aligned_cols=317 Identities=15% Similarity=0.055 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCC--HHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIE----PHY--HRA 334 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~--~~~ 334 (608)
+......|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+.-..+... ... -++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999999887654432 234555677888999998877665544432 211 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-----CCChHH
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-----ADSAPQ 409 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~ 409 (608)
+.+++..+....++.+++.+-+..+. +...... .........++.....++.++++++.|+.++... +-..-.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~-lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLG-LPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 88999999999999999988777665 4333321 2223566668888888999999999999998763 223346
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCCc----ccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDVD----ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN- 484 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 484 (608)
++..+|.++..+.++++|+-+..++.++... +...-+ ...+++.++..+..+|+.-+|.++.+++.++.-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky----r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY----RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH----HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 7889999999999999999988888765322 211111 2667888999999999999999999999876432
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHcCCHHH-----HH
Q 040048 485 -NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------YNSVLLCNRAACRSKLGQFEK-----AI 552 (608)
Q Consensus 485 -~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~-----A~ 552 (608)
+.... +..+..+|++|...|+.+.|..-|+.|+..-. ....++...|.++....-..+ |+
T Consensus 240 Gdra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 240 GDRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred CChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 22221 23345889999999999999999999987522 124566677777766554444 89
Q ss_pred HHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 553 EDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 553 ~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+.-++++++... ....+..++.+|..+|.-++=...+..+-+
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 988888887543 246778999999999888777777666544
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=2.3e-09 Score=108.14 Aligned_cols=141 Identities=21% Similarity=0.144 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..+++..+..++..|++++|+..++..+...|+++..+. ..+.+++..++..+|++.+++++..+|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~------------~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLE------------LAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 788899999999999999999999999999999998886 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
+.++.++|.+|.+.|++.+|+..++..+..+|+++..|..||+.|..+|+..+|...+-+...+...-.++..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII 446 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777777766666666555444433
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.15 E-value=8.7e-09 Score=99.68 Aligned_cols=186 Identities=11% Similarity=-0.006 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY---RSNKTAALIALGRLLEAVFECREAIRIEPHY---HRA 334 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 334 (608)
..+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3578889999999999999999999999999999998655 5899999999999999999999999999887 568
Q ss_pred HHHHHHHHHHcCC------------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHH
Q 040048 335 HHRLANLYLRLGE------------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET 396 (608)
Q Consensus 335 ~~~la~~~~~~g~------------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 396 (608)
++.+|.++..++. ..+|+..|++.+. ..|+.......-. -+..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-~yP~S~ya~~A~~-----------------rl~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-GYPNSQYTTDATK-----------------RLVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-HCcCChhHHHHHH-----------------HHHHH
Confidence 8999988755541 2456677777776 5555521111100 00000
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ 476 (608)
Q Consensus 397 ~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (608)
...+ ..--..+|..|.+.|.|..|+.-++.+++..|+... ..+++..++..|..+|..++|.....
T Consensus 171 ~~~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~-------~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 171 KDRL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA-------TRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch-------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0000 122345688888999999999999999888887432 37889999999999999999987765
Q ss_pred HH
Q 040048 477 KA 478 (608)
Q Consensus 477 ~a 478 (608)
..
T Consensus 237 ~l 238 (243)
T PRK10866 237 II 238 (243)
T ss_pred HH
Confidence 43
No 131
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.15 E-value=1.9e-11 Score=116.74 Aligned_cols=240 Identities=18% Similarity=0.170 Sum_probs=182.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 346 (608)
+...|+.|+++|.|++|+.||.+++..+|.++..+.+++.+|+++..|..|...|..++.++..+..+|.+.+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e 426 (608)
...+|.+.++.++. +.|....... .+.......+
T Consensus 180 ~~~EAKkD~E~vL~-LEP~~~ELkK---------------------------------------------~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA-LEPKNIELKK---------------------------------------------SLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHh-hCcccHHHHH---------------------------------------------HHHHhcchHh
Confidence 99999999999998 8887621100 0000000111
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN 506 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~ 506 (608)
+.-. .++ .| | +-+|..-..+++.+ ..-|.
T Consensus 214 ~~I~-~Ks---T~--------------------------G-~~~A~Q~~~Q~l~~--------------------K~~G~ 242 (536)
T KOG4648|consen 214 RKIA-TKS---TP--------------------------G-FTPARQGMIQILPI--------------------KKPGY 242 (536)
T ss_pred hhHH-hhc---CC--------------------------C-CCccccchhhhccc--------------------cCcch
Confidence 1000 000 00 1 11222222222211 13466
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586 (608)
Q Consensus 507 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 586 (608)
.+...|.++.++.+|.+-+..+..+..+-.+ +..|.+.-++++|+..+.+++..+|.........+.+---.|...++.
T Consensus 243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K 321 (536)
T KOG4648|consen 243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVK 321 (536)
T ss_pred hhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcC
Confidence 7778889999999998887776665555445 778888889999999999999998887777777777777778889999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 040048 587 QDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 587 ~~~~~al~l~P~~~~~~~ 604 (608)
..++.++.+.|.+.....
T Consensus 322 ~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 322 PTKQTAVKVAPAVETPKE 339 (536)
T ss_pred cchhheeeeccccccchh
Confidence 999999999998776544
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.5e-10 Score=110.50 Aligned_cols=106 Identities=29% Similarity=0.502 Sum_probs=97.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPY----N-----------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
...|..+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+..+.++|+++|++.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 47899999999999999999999875221 1 34788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
.++|+.|.++..+|+++.|+..|+++++++|+|.++...|.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 133
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=2.4e-10 Score=87.66 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE-KWEASMQDYEILKKEAP 597 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~P 597 (608)
++..|..+|.++...|++++|+.+|+++++++|+++.+|+++|.+|..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57788999999999999999999999999999999999999999999998 79999999999999988
No 134
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.11 E-value=2.7e-10 Score=87.39 Aligned_cols=67 Identities=28% Similarity=0.530 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEP 329 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 329 (608)
++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
No 135
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.1e-09 Score=88.91 Aligned_cols=98 Identities=33% Similarity=0.476 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040048 581 KWEASMQDYEILKKEAPD 598 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~ 598 (608)
++++|..++.++++.+|+
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
No 136
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.10 E-value=6.3e-09 Score=100.48 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 040048 300 YRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAH 376 (608)
Q Consensus 300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 376 (608)
-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+..++|.|++++..--..+. ...+-........++
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-TARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34566777888899999999999988754433 23455567788899999998876544433 222233344567889
Q ss_pred HHHhHHHHHhhcHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048 377 LNKCTDAKRTRDWNTLIQETRAAIAGGA----DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA 452 (608)
Q Consensus 377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~ 452 (608)
.+++..+.+..++.+++.+-+..+.... .........++.++..++.++++++.|+.+++...+..+... ..
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L----El 162 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML----EL 162 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----ee
Confidence 9999999999999999998888776532 222366777999999999999999999999987665444333 37
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL---- 527 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---- 527 (608)
.++..+|.++....++++|+.+..++.++..... .-|.. .....+++.++..+..+|+...|.++++++.++
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~---kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL---KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH---HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999988754432 11111 112345578999999999999999999999876
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHH
Q 040048 528 --DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEA-----SMQDYEILKK 594 (608)
Q Consensus 528 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~-----A~~~~~~al~ 594 (608)
.+..+..+.-+|.+|...|+.+.|..-|+.|...... ...++...|.++....-..+ |++.-+++++
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~le 319 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLE 319 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 2334567788999999999999999999999876432 24556666666655444443 7777777776
Q ss_pred hC
Q 040048 595 EA 596 (608)
Q Consensus 595 l~ 596 (608)
+.
T Consensus 320 vA 321 (518)
T KOG1941|consen 320 VA 321 (518)
T ss_pred HH
Confidence 53
No 137
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.6e-09 Score=96.31 Aligned_cols=110 Identities=37% Similarity=0.659 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
+..+..-|+-++..|+|++|..-|..||.+.|.. ..+|.+.|.++.+++.++.|+..+.++|+++|.+..++.++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3444577999999999999999999999999865 46888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 573 ADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 573 a~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|.+|.++..|++|++.|+++++++|...+++..+.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999999999887654
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=2e-08 Score=94.80 Aligned_cols=188 Identities=19% Similarity=0.165 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAH 335 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~ 335 (608)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998886 4679999999999999999999999999999987 4688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH--HHHHH
Q 040048 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP--QIYAL 413 (608)
Q Consensus 336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~ 413 (608)
+.+|.+++.+.. ..+ . .+ ...+...+|+..++..+...|++.- .+...
T Consensus 83 Y~~g~~~~~~~~--~~~-------~-~~--------------------~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 83 YMLGLSYYKQIP--GIL-------R-SD--------------------RDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHHHHHHHHHH--HHH---------TT-----------------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCc--cch-------h-cc--------------------cChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 888888776521 110 0 11 1124566777788888887777631 11111
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
+..+-..+ +.--+.+|..|++.|.+..|+..++.+++..|+....-.
T Consensus 133 l~~l~~~l------------------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~--- 179 (203)
T PF13525_consen 133 LAELRNRL------------------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEE--- 179 (203)
T ss_dssp HHHHHHHH------------------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHH---
T ss_pred HHHHHHHH------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHH---
Confidence 11111111 444566899999999999999999999999999877643
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAA 518 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~ 518 (608)
++..++..+.++|..+.|.
T Consensus 180 ------al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 180 ------ALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ------HHHHHHHHHHHTT-HHHHH
T ss_pred ------HHHHHHHHHHHhCChHHHH
Confidence 3457888999999887543
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=5.6e-09 Score=98.64 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=124.4
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN 484 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 484 (608)
+..+..++..|..++..|++.+|+..|++++...|.... ...+.+.+|.+++..|++++|+..+++.+...|+
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 444567777788888888888888888888877776422 2788899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhhcCCCCCH-----------------HHHH
Q 040048 485 NKEVNMVMRKAKGVAAARSNGNALFKQ-----------AKFSEAAAAYGDGLGLDPYNS-----------------VLLC 536 (608)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~-----------g~~~eA~~~~~~al~~~p~~~-----------------~~~~ 536 (608)
++.+-. +++.+|.+++.. +...+|+..|+..+...|++. .--+
T Consensus 75 ~~~~~~---------A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 75 SPKADY---------ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp -TTHHH---------HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccchhh---------HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 886543 234566665443 345689999999999999862 2234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASM 586 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~ 586 (608)
.+|..|.+.|.|..|+..|+.+++..|+. .+++..++.+|.++|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 67899999999999999999999999987 467899999999999988554
No 140
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.07 E-value=2.2e-09 Score=106.95 Aligned_cols=225 Identities=16% Similarity=0.130 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHH
Q 040048 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEP--HY----HRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 352 (608)
+|++|..+|++| |.+|...|++++|..+|.++....- ++ ...+...+.+|... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 556666555554 6677777888888888877765421 11 23455555555444 777777
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc-CChHHHHHHh
Q 040048 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL-HKHQEADETL 431 (608)
Q Consensus 353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~l 431 (608)
.+|++++. ++...|++..+ ..++..+|.+|... |++++|+++|
T Consensus 95 ~~~~~A~~---------------------~y~~~G~~~~a---------------A~~~~~lA~~ye~~~~d~e~Ai~~Y 138 (282)
T PF14938_consen 95 ECYEKAIE---------------------IYREAGRFSQA---------------AKCLKELAEIYEEQLGDYEKAIEYY 138 (282)
T ss_dssp HHHHHHHH---------------------HHHHCT-HHHH---------------HHHHHHHHHHHCCTT--HHHHHHHH
T ss_pred HHHHHHHH---------------------HHHhcCcHHHH---------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777644 33444555555 34556667777777 7888888888
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ 511 (608)
Q Consensus 432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 511 (608)
+++++....+..... ....+..+|.++...|+|++|+..|+++....-++...... .-..+...+.+++..
T Consensus 139 ~~A~~~y~~e~~~~~----a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~-----~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 139 QKAAELYEQEGSPHS----AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS-----AKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHHHHHTT-HHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhh----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh-----HHHHHHHHHHHHHHc
Confidence 887765433221111 26778899999999999999999999998765433211100 011224678899999
Q ss_pred CCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC
Q 040048 512 AKFSEAAAAYGDGLGLDPYN-----SVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 512 g~~~eA~~~~~~al~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 563 (608)
|++..|...+++....+|.. ..+...|-.++.. ...+++|+..|.+.-.+++
T Consensus 210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 99999999999999998743 3344555555543 4568888888887666553
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.2e-09 Score=97.63 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 338 (608)
..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++.+.|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 567789999999999999999999999999987764 46899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 406 (608)
|.+|...|+...+...+..++. .+.+|+..+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchh
Confidence 9999999998887766666542 4677788888888887765
No 142
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=2e-08 Score=97.14 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=140.6
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN 484 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 484 (608)
+..+..++..|..+...|++++|+..|++++...|.... ...+.+.+|.+++..+++++|+..+++.++.+|+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 344667778899999999999999999999999887521 1456789999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcC------------------CHHHHHHHHHHhhcCCCCCH--------------
Q 040048 485 NKEVNMVMRKAKGVAAARSNGNALFKQA------------------KFSEAAAAYGDGLGLDPYNS-------------- 532 (608)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~p~~~-------------- 532 (608)
++.+-. +++.+|.++...+ ...+|+..|++.++..|+..
T Consensus 102 ~~~~~~---------a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 102 HPNIDY---------VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred CCchHH---------HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 987654 3356776654433 13578899999999999762
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 533 ---VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 533 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
.--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 123467888999999999999999999998875 688999999999999999998766543
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.4e-09 Score=100.18 Aligned_cols=125 Identities=20% Similarity=0.157 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 546 (608)
..+.-+.-++.-+..+|++.+-|. .||.+|+..|+++.|...|.+++++.|++++.+..+|.++....
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~------------~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWD------------LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHH------------HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 467778888899999999999997 89999999999999999999999999999999999999987754
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 547 ---QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 547 ---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
...++...|++++.++|++..+.+.||..++..|+|.+|+..++..++..|.+..-.
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 467899999999999999999999999999999999999999999999998776543
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=3.6e-09 Score=90.67 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHR 337 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~ 337 (608)
+++++.+|..++..|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5789999999999999999999999999999886 5689999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 338 LANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 338 la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+|.++...|++++|+..+.+++. ..|++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK-RYPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH-HCcCC
Confidence 99999999999999999999998 77776
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-07 Score=88.77 Aligned_cols=166 Identities=20% Similarity=0.177 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
.....-|.++.+.+++++|+..+..... .++...-..++.++.+++-|...+++..+++.+..-.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN---------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3455557788888888888888877432 5666666778888888888888888887776553322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 489 NMVMRKAKGVAAARSNGNALF----KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
.+|..+. ..+++.+|.-+|++.-+..|..+..+..++.|...+|+|++|...++.++..+++
T Consensus 174 --------------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 174 --------------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred --------------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 2333332 2356888888888888877777888888888888889999999988888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHH
Q 040048 565 YSKARLRRADCFAKIEKWEASM-QDYEILKKEAPDDEEVD 603 (608)
Q Consensus 565 ~~~a~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~~~~ 603 (608)
+++++.++-.+-...|.-.++. +...+....+|+++-+.
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 8888888888888888776654 44555666677766543
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2e-09 Score=87.23 Aligned_cols=98 Identities=33% Similarity=0.508 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
+++.+|..++..|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 040048 346 GEVEKAIYHFKHAGPEADQ 364 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p 364 (608)
|++++|...+.+++. ..|
T Consensus 82 ~~~~~a~~~~~~~~~-~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALE-LDP 99 (100)
T ss_pred HhHHHHHHHHHHHHc-cCC
Confidence 999999999999876 544
No 147
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=3.8e-09 Score=97.14 Aligned_cols=101 Identities=21% Similarity=0.279 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.+|++++...|++..++..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34599999999999999999999999886653 578999999999999999999999999999999999999999999
Q ss_pred HHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 040048 577 AKIEK--------------WEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 577 ~~~g~--------------~~~A~~~~~~al~l~P~~~ 600 (608)
..+|+ +++|+++++++++++|++-
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99988 6889999999999999875
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=4.5e-09 Score=96.30 Aligned_cols=125 Identities=19% Similarity=0.158 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY---NSVLLCNRAACRS 543 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~~~ 543 (608)
.+..+...+...++..+....+. .+..+|.++...|++++|+..|++++.+.|+ .+.++.++|.++.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAF----------TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccchhhhhHhccCCchhHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 35556666655555444443333 3458999999999999999999999988665 3468999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 040048 544 KLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA-------KIEKWE-------ASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 544 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-------~~g~~~-------~A~~~~~~al~l~P~~~~ 601 (608)
..|++++|+.+|++++.+.|.....+..+|.++. .+|+++ +|+.+|++++..+|++..
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 9999999999999999999999999999999988 777766 677777788889986543
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.03 E-value=8.1e-09 Score=94.61 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
.+..|+.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.+|++++.++|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46788999999999999999999999999987763 458999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q 040048 340 NLYLRLG 346 (608)
Q Consensus 340 ~~~~~~g 346 (608)
.++..+|
T Consensus 114 ~i~~~~~ 120 (168)
T CHL00033 114 VICHYRG 120 (168)
T ss_pred HHHHHhh
Confidence 9998444
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.5e-09 Score=82.16 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
.+|..++..|++++|+..|+++++..|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677788888888888888888888888888888888888888888888888888888888764
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=2.4e-08 Score=88.99 Aligned_cols=126 Identities=20% Similarity=0.181 Sum_probs=105.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVL 534 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 534 (608)
.+......++...+...++..+...|+...... +...+|.+++..|++++|+..|+.++...|+. ..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~---------A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAAL---------AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 334444689999999999999999999854432 23489999999999999999999999987655 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
.+.+|.++...|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88999999999999999999976 33344457788999999999999999999999875
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=5.3e-09 Score=91.75 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
+..+..|.-++..|++++|..+|+-+...+|.++..|..||.|+..+|+|++|+..|..+..++++++...+..|.||..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 579 IEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
+|+.+.|+.+|+.+++ .|.+..++.
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999 677777654
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.00 E-value=9.4e-10 Score=87.97 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 276 KAGNFAEALALYDAAISIDPN--KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY 353 (608)
Q Consensus 276 ~~g~~~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 353 (608)
.+|+|++|+.+|+++++.+|. +..+++.+|.||+..|++++|+..+++ +..++.+...++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHh
Q 040048 354 HFKHA 358 (608)
Q Consensus 354 ~~~~a 358 (608)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
No 154
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.99 E-value=1.2e-07 Score=105.68 Aligned_cols=247 Identities=15% Similarity=0.041 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048 313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL 392 (608)
Q Consensus 313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 392 (608)
+-.+..+.|++.+.-+|+..-.|..+...+..+++.++|.+.++++|..+++... ...+..|..+.......|.-+..
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe--eEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE--EEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh--HHHHHHHHHHHhHHHhhCcHHHH
Confidence 3445567788888888888888888888888888888888888888876655432 22233444444444444666667
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 040048 393 IQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL 472 (608)
Q Consensus 393 ~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (608)
.+.|+++.+.... ..+|..|..+|...+.+++|.++|+..++.... ...+|..+|..++...+-+.|.
T Consensus 1517 ~kVFeRAcqycd~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q----------~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ----------TRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHhcch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc----------hhhHHHHHHHHHhcccHHHHHH
Confidence 7777777765432 357888899999999999999999999886653 3889999999999999999999
Q ss_pred HHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 473 AAIQKAAKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 473 ~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
..+.+|++.-|. +.+... ..|.+.++.|+.+.+..+|+-.+..+|.-.++|.-+...-.+.|+.+.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~Is------------kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFIS------------KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHH------------HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH
Confidence 999999999998 444433 778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHc-CCHHHH
Q 040048 551 AIEDCNAALNVR--PGYSKARLRRADCFAKI-EKWEAS 585 (608)
Q Consensus 551 A~~~~~~al~~~--p~~~~a~~~la~~~~~~-g~~~~A 585 (608)
+...|++++.+. |.....+|..=.-|.+. |+-+..
T Consensus 1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999864 55555555554445443 454333
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=1.4e-06 Score=83.05 Aligned_cols=227 Identities=32% Similarity=0.362 Sum_probs=163.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 277 AGNFAEALALYDAAISIDPNK--ASYRSNKTAALIALGRLLEAVFECREAIR--IEPHYHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 277 ~g~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 352 (608)
.+.+..+...+..++...+.. .......+..+...+.+..++..+...+. ..+.....+..++..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 577888888888888888763 67788888888889999999999888887 67777888888888888888888888
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH-HHHHcCChHHHHHHh
Q 040048 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE-ALLKLHKHQEADETL 431 (608)
Q Consensus 353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~-~~~~~g~~~eA~~~l 431 (608)
..+..++. ..+... ......+. ++...+++++|...+
T Consensus 116 ~~~~~~~~-~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~a~~~~ 153 (291)
T COG0457 116 ELLEKALA-LDPDPD-----------------------------------------LAEALLALGALYELGDYEEALELY 153 (291)
T ss_pred HHHHHHHc-CCCCcc-----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888876 444330 11111122 566666666666666
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFK 510 (608)
Q Consensus 432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~ 510 (608)
.+++...|.. ......+...+..+...++++.|+..+.+++...+. ...... .++..+..
T Consensus 154 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 214 (291)
T COG0457 154 EKALELDPEL-------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL------------NLGLLYLK 214 (291)
T ss_pred HHHHhcCCCc-------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH------------HhhHHHHH
Confidence 6665544310 012455555566677777888888888888887777 344443 67777778
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
.+++++|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888887776667777777777666788888888888887776
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=2.2e-08 Score=107.11 Aligned_cols=137 Identities=12% Similarity=0.067 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHH
Q 040048 452 ANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAA 520 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~ 520 (608)
+.-++..|.-++..++ +..|+.+|+++++++|++..++.. ++.++... .+...+...
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~------------la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAE------------KALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHH------------HHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5556667777766555 789999999999999999888763 33333222 235567777
Q ss_pred HHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 521 YGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 521 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
..+++.+ ++.++.++..+|..+...|++++|...|++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|.
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 7776664 7777899999999999999999999999999999995 889999999999999999999999999999999
Q ss_pred CHH
Q 040048 599 DEE 601 (608)
Q Consensus 599 ~~~ 601 (608)
++.
T Consensus 486 ~pt 488 (517)
T PRK10153 486 ENT 488 (517)
T ss_pred Cch
Confidence 875
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.1e-09 Score=87.65 Aligned_cols=81 Identities=32% Similarity=0.485 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD 588 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 588 (608)
.|+|++|+.+|+++++..|. +...++.+|.|+++.|+|++|+..+++ +..++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999985 467788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 040048 589 YEIL 592 (608)
Q Consensus 589 ~~~a 592 (608)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-08 Score=98.53 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
+......|..|++.|+|..|...|++++..-.. +.+-. .....-....+.+++.++.++++|.+|+..++++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~-~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQ-KKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHH-HHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 555667899999999999999999999875432 11111 1111223556789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 040048 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS-MQDYEILKKEAP 597 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l~P 597 (608)
+|++..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+..+..++.+. .+.|..++..-+
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999998887776655 788888887655
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.95 E-value=1.6e-08 Score=98.50 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=93.6
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Q 040048 503 SNGNAL-FKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADC 575 (608)
Q Consensus 503 ~lg~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~ 575 (608)
..|..+ +..|+|++|+..|++.+...|++ +.+++++|.+|+..|++++|+..|+++++..|++ +++++.+|.+
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 555655 56799999999999999999988 5799999999999999999999999999988874 7899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 576 FAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+..+|++++|+..|+++++.+|+...+...
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 999999999999999999999999876544
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.95 E-value=2.9e-09 Score=80.48 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 332 (608)
+.+|..++..|+|++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999874
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=6.6e-08 Score=86.16 Aligned_cols=127 Identities=20% Similarity=0.135 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLA 339 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la 339 (608)
..+......+..++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.||
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44455555667899999999999999999988 4568889999999999999999999999877655 45788899
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
.++...|++++|+..++.... +...+.++..+|.++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-------------------------------------------~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-------------------------------------------EAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-------------------------------------------cchHHHHHHHHHHHHH
Confidence 999999999999999866321 1112455666777888
Q ss_pred HcCChHHHHHHhhcCC
Q 040048 420 KLHKHQEADETLKNGP 435 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al 435 (608)
..|++++|+..|++++
T Consensus 130 ~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 130 AQGDYDEARAAYQKAL 145 (145)
T ss_pred HCCCHHHHHHHHHHhC
Confidence 8888888887777654
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.94 E-value=2.3e-06 Score=81.48 Aligned_cols=228 Identities=25% Similarity=0.261 Sum_probs=182.5
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc
Q 040048 311 LGRLLEAVFECREAIRIEPH--YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD 388 (608)
Q Consensus 311 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (608)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------- 88 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE-L-------------------------- 88 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh-h--------------------------
Confidence 56777788888888877776 367778888888888888888888877654 1
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH-HHHHcCC
Q 040048 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ-VNLACGR 467 (608)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~-~~~~~g~ 467 (608)
.........+...+..+...+.+..++..+..++...+.. .......+. ++...|+
T Consensus 89 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 89 -------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP----------DLAEALLALGALYELGD 145 (291)
T ss_pred -------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----------chHHHHHHHHHHHHcCC
Confidence 0111124567777888888888999999999998877664 233344444 8999999
Q ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHc
Q 040048 468 FEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-NSVLLCNRAACRSKL 545 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~ 545 (608)
++.|...+.+++...|. ...... +...+..+...+++++|+..+.+++...+. ....+..++.++...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 99999999999886663 111111 125566688899999999999999999999 799999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 546 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+++++|+..+..++...|.....+..++..+...+.++++...+.++++..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998888888898888888899999999999999986
No 163
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.93 E-value=3.2e-09 Score=101.76 Aligned_cols=106 Identities=31% Similarity=0.440 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
...|+-|+++|+|++|+.||.+++..+|.++..+.++|.+|++++.|..|...++.|+.++..+..+|.+++.+...+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 582 WEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
..+|.+.++.++++.|++.+....+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99999999999999999998876553
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.9e-08 Score=95.19 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=99.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH
Q 040048 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG---RLLEAVFECREAIRIEPHYHRAH 335 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~ 335 (608)
.+|.|++-|..||.+|+..|++..|...|.+++++.|+++..+..+|.+++.+. ...++...+++++.++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 358999999999999999999999999999999999999999999999988754 46789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+.||..++..|+|.+|+..++..+. ..|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999999999999999 55544
No 165
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=2.4e-07 Score=83.76 Aligned_cols=204 Identities=16% Similarity=0.058 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+.-++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHH-HHHHcCCCChHHHHHHHHHHHHH
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR-AAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++--|++.-|.+.+.+..+ .+|.++.+...+... ...-+..+|...+. ++...+.+ ..-..+...|+.
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ-~D~~DPfR~LWLYl~-------E~k~dP~~A~tnL~qR~~~~d~e---~WG~~iV~~yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQ-DDPNDPFRSLWLYLN-------EQKLDPKQAKTNLKQRAEKSDKE---QWGWNIVEFYLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHh-cCCCChHHHHHHHHH-------HhhCCHHHHHHHHHHHHHhccHh---hhhHHHHHHHHh
Confidence 9999999999999999888 888886543322111 12234555544433 33332211 111112222222
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD 482 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (608)
.=..+.+.+.....-..+.. .... -.+.++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~e~l~~~~~a~a~~n~~-~Ae~-----LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISEETLMERLKADATDNTS-LAEH-----LTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccHHHHHHHHHhhccchHH-HHHH-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 22222222222221111100 0001 16788999999999999999999999888654
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=2.7e-08 Score=87.30 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..-+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCC
Q 040048 342 YLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~ 360 (608)
|+.+|+.+.|+.+|..++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999986
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=5.1e-07 Score=100.90 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=197.4
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 040048 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR-IEPHY----HRAHHRLANLYLRLGEVEKAIY 353 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~----~~~~~~la~~~~~~g~~~~A~~ 353 (608)
+-.+..+.|++.+.-+|+....|..+-...++.++.++|.+.+++||. +++.. ...|..+-++...-|.-+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 344567789999999999999999999999999999999999999997 45543 3456666666666687788888
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhc
Q 040048 354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKN 433 (608)
Q Consensus 354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~ 433 (608)
.|++|.+..+| ...|..++.+|...+.+++|.++++.+++... ....+|..++..++...+-+.|...+.+
T Consensus 1519 VFeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1519 VFERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred HHHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999873343 46788999999999999999999999999877 5578999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 040048 434 GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAK 513 (608)
Q Consensus 434 al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~ 513 (608)
+++.-|.. .+.......|.+.++.|+.+.+..+|+..+..+|.-.+.|. -....-.+.|+
T Consensus 1590 AL~~lPk~--------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~------------VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1590 ALKSLPKQ--------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWS------------VYIDMEIKHGD 1649 (1710)
T ss_pred HHhhcchh--------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHH------------HHHHHHHccCC
Confidence 99988873 34788888999999999999999999999999999999997 45677788899
Q ss_pred HHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHH
Q 040048 514 FSEAAAAYGDGLGL--DPYNSVLLCNRAACRSK 544 (608)
Q Consensus 514 ~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~ 544 (608)
.+.+..+|++++.+ .+.....++..=.-|.+
T Consensus 1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 99999999999986 34445555444333433
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.1e-06 Score=82.23 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=181.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 273 EDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 352 (608)
-++-.|+|..++..-.+.-... ........+...|..+|.+...+......- .....+...++.....-++.++-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHH
Confidence 4556788888887776654433 667778888999999999877665544332 122345555555555555555544
Q ss_pred HHHHHhCC-CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048 353 YHFKHAGP-EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL 431 (608)
Q Consensus 353 ~~~~~al~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l 431 (608)
....+.+. .....+ ......-+.++..-+++++|++....... -++..+-..++.++.+++-|...+
T Consensus 93 ~~l~E~~a~~~~~sn------~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 93 ASLYELVADSTDGSN------LIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred HHHHHHHHhhccchh------HHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433321 111111 34455567778888999999888776332 356666778899999999999999
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA 507 (608)
Q Consensus 432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~ 507 (608)
+++.+++.+ ..+..+|..+.. .+++.+|.-+|++.-+..+..+.... ..+.+
T Consensus 161 k~mq~ided------------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln------------G~Av~ 216 (299)
T KOG3081|consen 161 KKMQQIDED------------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN------------GQAVC 216 (299)
T ss_pred HHHHccchH------------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc------------cHHHH
Confidence 999988754 445555555543 35689999999998886666666554 78899
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHH
Q 040048 508 LFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED-CNAALNVRPGYSKA 568 (608)
Q Consensus 508 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a 568 (608)
++.+|+|++|...++.++..++.+++++.++-.+-...|.-.++..- +.+....+|.++..
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999999999999988777654 45555567877643
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=1.4e-06 Score=92.55 Aligned_cols=306 Identities=17% Similarity=0.093 Sum_probs=180.0
Q ss_pred hHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048 252 TSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331 (608)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 331 (608)
..+.++..++. +.-...|......|-.++|+.+|++.-..| .+-..|...|.+++|.+..+.-=.+. .
T Consensus 790 RAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--L 857 (1416)
T KOG3617|consen 790 RALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--L 857 (1416)
T ss_pred HHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--h
Confidence 34444443333 333345667778899999999999875533 45677888999999988776543332 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCC---------CCchhHH----HHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPE---------ADQVDIA----KAKSLQAHLNKCTDAKRTRDWNTLIQETRA 398 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 398 (608)
...|++.|.-+...++.+.|+++|+++-.. -+|.... .......|..-+.-....|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 457899999999999999999999987320 0010000 000001111222333344455555554444
Q ss_pred HHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 399 AIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478 (608)
Q Consensus 399 al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (608)
+ .-|+.+..+.+-+|+.++|..+-++. ++..+.+.+|+.|...|++.+|+..|.++
T Consensus 938 A---------~D~fs~VrI~C~qGk~~kAa~iA~es---------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 938 A---------KDYFSMVRIKCIQGKTDKAARIAEES---------------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred h---------hhhhhheeeEeeccCchHHHHHHHhc---------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3 22334444444555555555544443 34778889999999999999999998876
Q ss_pred HH------hCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHh------------------h-----c
Q 040048 479 AK------QDSNNK--EVNMVMRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDG------------------L-----G 526 (608)
Q Consensus 479 l~------~~p~~~--~~~~~l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~a------------------l-----~ 526 (608)
-. +...+. +-...+.......-....+..|...| ....|..+|.+| + .
T Consensus 994 qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 994 QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 44 222221 11111111000001112233333333 444444444332 1 1
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhcC----------------CC---------CHHHHHHHHH
Q 040048 527 LDP-YNSVLLCNRAACRSKLGQFEKAIEDCN------AALNVR----------------PG---------YSKARLRRAD 574 (608)
Q Consensus 527 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~----------------p~---------~~~a~~~la~ 574 (608)
++| .++.++..-+..+....+|++|...+- .|+.+. |. -...+..+|.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 344 457888888999999999999987654 444431 21 1356788999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040048 575 CFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al 593 (608)
++.++|.|..|-+-|.+|=
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHhccchHHHHHHHhhhh
Confidence 9999999999998888763
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=98.83 E-value=1.3e-07 Score=96.32 Aligned_cols=136 Identities=10% Similarity=-0.050 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---------cCCHHHHH
Q 040048 454 LLVVRAQVNLACGR---FEDALAAIQKAA---KQDSNNKEVNMVMRKAKGVAAARSNGNALFK---------QAKFSEAA 518 (608)
Q Consensus 454 ~~~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---------~g~~~eA~ 518 (608)
-++..|...+..+. .+.|+.+|.+++ .++|+...++. .++.+++. .....+|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~------------~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC------------LLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH------------HHHHHHHHHHHhcCCCchHHHHHHH
Confidence 44667777666554 568899999999 89999888876 33444332 34567899
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 519 AAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 519 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+..+++++++|.++.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+.++++++++|.
T Consensus 325 ~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 325 ELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHH
Q 040048 599 DEE 601 (608)
Q Consensus 599 ~~~ 601 (608)
-..
T Consensus 405 ~~~ 407 (458)
T PRK11906 405 RRK 407 (458)
T ss_pred hhH
Confidence 543
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=5.7e-07 Score=81.35 Aligned_cols=195 Identities=9% Similarity=-0.001 Sum_probs=138.7
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNA 452 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~ 452 (608)
...++.+|..|-..|-|.-|.-.+.+++.+.|+. +.+++.+|..+...|+++.|.+.|...++++|.. -
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y----------~ 133 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------N 133 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc----------h
Confidence 5667777888888999999999999999999987 6899999999999999999999999999999974 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HhhcCCCCC
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYG-DGLGLDPYN 531 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~-~al~~~p~~ 531 (608)
.+..+.|..++.-|++.-|.+.+.+-.+.+|+++--..++ .+-...-+..+|..-+. ++... .+.
T Consensus 134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-------------Yl~E~k~dP~~A~tnL~qR~~~~-d~e 199 (297)
T COG4785 134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-------------YLNEQKLDPKQAKTNLKQRAEKS-DKE 199 (297)
T ss_pred HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-------------HHHHhhCCHHHHHHHHHHHHHhc-cHh
Confidence 7888899999999999999999999999999988643322 11223345566654443 33333 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
-+.|+..+.. +|+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++.-+
T Consensus 200 ~WG~~iV~~y---LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 200 QWGWNIVEFY---LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhhHHHHHHH---HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333332222 232221 22333333332222 4677788888888888888888887776543
No 172
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.4e-07 Score=84.09 Aligned_cols=102 Identities=32% Similarity=0.513 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 338 (608)
++.+..-|+-++..|+|++|..-|..||.+.|..+ ..|.+.|.+++.++.++.|+..+.++|+++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 55677889999999999999999999999999863 4688999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
|.+|..+.+|++|+..|+++++ .+|..
T Consensus 175 Aeayek~ek~eealeDyKki~E-~dPs~ 201 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILE-SDPSR 201 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH-hCcch
Confidence 9999999999999999999999 88876
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=9.1e-08 Score=93.25 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 040048 262 MDPETLKIMGNED-YKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRA 334 (608)
Q Consensus 262 ~~~~~~~~lg~~~-~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 334 (608)
.+...++..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567788888876 56799999999999999999998 5799999999999999999999999999988875 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
++.+|.++..+|++++|+..|++++. ..|+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~-~yP~s 250 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK-KYPGT 250 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCC
Confidence 99999999999999999999999998 77766
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.80 E-value=1.6e-07 Score=96.28 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=115.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL 534 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 534 (608)
.-.+-.++...++++.|+..+++..+.+|+ +.. .++.++...++..+|++.+.+++...|.+..+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~------------~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAV------------LLARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHH------------HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 334555666788999999999999988876 332 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
+...+..+...++++.|+...++++.+.|++...|+.|+.+|..+|+++.|+..+..+=-..+.+...
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999998777554443344333
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=1.5e-07 Score=100.76 Aligned_cols=136 Identities=15% Similarity=0.047 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhh--CCC
Q 040048 264 PETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALG--------RLLEAVFECREAIRI--EPH 330 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~~--~p~ 330 (608)
+-.++..|..++..++ +..|+.+|++|++++|+++.+|..++.++.... +...+....++++.+ +|.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3446777877776655 778999999999999999888888888775542 234556666665553 666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA 407 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 407 (608)
.+.+|..+|..+...|++++|...+++++. ++|+ ...|..+|..+...|+.++|+..|++++.++|...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps-------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID-LEMS-------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 777888888888888888888888888888 7763 34566666666666666666666666666666554
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.77 E-value=2.8e-07 Score=93.88 Aligned_cols=150 Identities=10% Similarity=0.006 Sum_probs=126.5
Q ss_pred hHHHHHHhhcCC---CCCCcccccccCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 424 HQEADETLKNGP---NFDVDETTRFFGPIGNANLLVVRAQVNLAC---------GRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 424 ~~eA~~~l~~al---~~~p~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
.+.|+.+|.+++ .++|+. +.+|..++.+++.. ....+|....+++++++|.++.+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~- 342 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILA- 342 (458)
T ss_pred HHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHH-
Confidence 467888899999 888875 78888888887654 2456889999999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
.+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..+-..
T Consensus 343 -----------~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 343 -----------IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred -----------HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999987665544
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHHh
Q 040048 572 RADC-FAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 572 la~~-~~~~g~~~~A~~~~~~al~l 595 (608)
.-.+ .+-....++|+..|-+-.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 412 KECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHHcCCchhhhHHHHhhcccc
Confidence 4444 44456778888888765443
No 177
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.77 E-value=1.2e-05 Score=86.84 Aligned_cols=293 Identities=14% Similarity=0.116 Sum_probs=197.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIY 353 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 353 (608)
....++|.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34678999999999999999999999999999999999999999988888877888888899999999999999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH-------
Q 040048 354 HFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE------- 426 (608)
Q Consensus 354 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e------- 426 (608)
+|++++. .+|.. ...+.+...|.+.++|.+-.+.--+..+..|...-..|..+..++......++
T Consensus 99 ~Ye~~~~-~~P~e-------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 99 LYERANQ-KYPSE-------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHh-hCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999998 77773 34455556667777776666655566667777766677776666666555444
Q ss_pred --HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 427 --ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK-AAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 427 --A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
|....++.++.... .+...=....-.++..+|++++|.+.+.. ..+..+....... ..
T Consensus 171 ~LA~~m~~~~l~~~gk--------~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~-----------~~ 231 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGK--------IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLE-----------NK 231 (932)
T ss_pred HHHHHHHHHHhccCCc--------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHH-----------HH
Confidence 33444555544310 01122223344567788999999999843 3333333322221 14
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHH
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN-------------RAACRSKLGQFEKAIEDCNAALNVRPGYS-KAR 569 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~ 569 (608)
.+..+...++|.+-.+...+++...+++-..+.. .+..+...+..+..++...+.+.-....+ -++
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~ 311 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLAR 311 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence 5677888899999999999999988887221111 11112222334444444444444322222 334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al 593 (608)
+.+-.-+...|+.+++.-.|-+-+
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHHh
Confidence 444334456788888776665544
No 178
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=1.5e-07 Score=89.23 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADC 575 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~ 575 (608)
+..|.-+++.|+|.+|...|..-++..|+. +.++++||.+++.+|+|++|...|..+++-.|++ +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 378888999999999999999999999976 6899999999999999999999999999988775 7899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 576 FAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
...+|+.++|...|+++++..|+.+.+..
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999999999999887654
No 179
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=4.8e-06 Score=88.59 Aligned_cols=143 Identities=18% Similarity=0.144 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDS---------NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY 521 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 521 (608)
+..+|...|..+...|+.+.|+.+|..+-.... .-..+-.+.+......+-+.+|..|...|++.+|+.+|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467888899999999999999999988765321 11112212222233445578999999999999999999
Q ss_pred HHhhc------CCCCC--------------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hh--------------
Q 040048 522 GDGLG------LDPYN--------------SVLLCNRAACRSKLG-QFEKAIEDCNAA------LN-------------- 560 (608)
Q Consensus 522 ~~al~------~~p~~--------------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-------------- 560 (608)
.+|-. +...+ +.-....|..|...| +++.|...|.+| ++
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 87643 22211 011112334444555 566666655543 21
Q ss_pred ---cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 561 ---VRP-GYSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 561 ---~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
++| .++..+.+-+..+....+|++|...+-.+.
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 234 367888888999999999999987655443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=3.1e-07 Score=77.78 Aligned_cols=97 Identities=24% Similarity=0.190 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPH---YHRAHHR 337 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~ 337 (608)
|.+++.+|.++-..|+.++|+.+|++++...... ..++..+|.++..+|++++|+..+++++...|+ +..+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4578999999999999999999999999976554 568999999999999999999999999999888 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCC
Q 040048 338 LANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 338 la~~~~~~g~~~~A~~~~~~al~ 360 (608)
++.++...|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.73 E-value=2.2e-05 Score=77.31 Aligned_cols=268 Identities=15% Similarity=0.066 Sum_probs=149.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTA--ALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
..|-++..-+...+..|+|+.|..-|+..+. +|+- ..+-..|. --...|..+.|+.+.+++-...|..+.++...-
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 3455666677788888888888888887664 3332 12222222 223578888888888888888888888888777
Q ss_pred HHHHHcCCHHHHHHHHHHhCC--CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGP--EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA 417 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~ 417 (608)
...+..|+++.|++..+.... .+.++... ......+...+ ..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-R~rAvLLtAkA-----------------------------------~s 239 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAE-RSRAVLLTAKA-----------------------------------MS 239 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHH-----------------------------------HH
Confidence 788888888888888765433 01111100 00000000011 11
Q ss_pred HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048 418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497 (608)
Q Consensus 418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 497 (608)
. -.-+...|...-.++.++.|+. ...-..-+..++..|+..++-.+++.+.+..|.. +++
T Consensus 240 ~-ldadp~~Ar~~A~~a~KL~pdl----------vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia-------- 299 (531)
T COG3898 240 L-LDADPASARDDALEANKLAPDL----------VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIA-------- 299 (531)
T ss_pred H-hcCChHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHH--------
Confidence 1 1123444555555555555553 3444455566666666666666666666665542 221
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEA-AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+..++.+.|+.... ++-..+...+.|++.+..+.++..-+..|++..|...-+.+....|.. .++..++++-
T Consensus 300 ------~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIe 372 (531)
T COG3898 300 ------LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIE 372 (531)
T ss_pred ------HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHH
Confidence 11233333332221 122233334556666666666666666666666666666666666553 3455556655
Q ss_pred HHc-CCHHHHHHHHHHHHH
Q 040048 577 AKI-EKWEASMQDYEILKK 594 (608)
Q Consensus 577 ~~~-g~~~~A~~~~~~al~ 594 (608)
... |+-.+...++-++++
T Consensus 373 eAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhccCchHHHHHHHHHHhc
Confidence 444 666666666666654
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=3.9e-08 Score=74.97 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=61.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
++..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999988888777754
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=9.8e-08 Score=73.91 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=44.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 539 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
..+|...+++++|++++++++.++|+++..|+.+|.++..+|++++|+..|+++++..|+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 445666666666666666666666666666666666666666666666666666666666666543
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.4e-07 Score=72.98 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+..+++..++|++|+.++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|++..+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999998877665543
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.64 E-value=7.6e-06 Score=77.10 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=141.9
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN 484 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 484 (608)
+..+..++..|...+..|++++|+..|+.+....|-... ...+.+.++..+++.+++++|+..+++-+.+.|+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 344667888888889999999999999999888876432 2788999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCCH-----------------HHHHHHH
Q 040048 485 NKEVNMVMRKAKGVAAARSNGNALFKQ--------AKFSEAAAAYGDGLGLDPYNS-----------------VLLCNRA 539 (608)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~~-----------------~~~~~la 539 (608)
++++-..+ +..|.+++.. .-..+|+..|+..+...|+.. ..-..+|
T Consensus 104 ~~n~dY~~---------YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 104 HPNADYAY---------YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred CCChhHHH---------HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 98876532 4566665543 224678888999999988752 1224678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Q 040048 540 ACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKIEKWEASMQDYEILKKEA-PDD 599 (608)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~ 599 (608)
..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|... .+++..+ |++
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~s 237 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPDS 237 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCCC
Confidence 89999999999999999999987764 57889999999999999999765 5555555 444
No 186
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.64 E-value=1.2e-06 Score=75.30 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRAD 574 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 574 (608)
++..|...+..|+|++|++.|+.+....|.. ..+.+.+|.+|++.|++++|+..+++-++++|.+ ..+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3588999999999999999999999988754 5788999999999999999999999999999987 468899999
Q ss_pred HHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 575 CFAKIEK---------------WEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 575 ~~~~~g~---------------~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+++.+.. ..+|...|+++++..|++.-+..+
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999887 899999999999999999876543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=7.5e-08 Score=73.39 Aligned_cols=64 Identities=34% Similarity=0.500 Sum_probs=38.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+..|++++|+..|++++..+|++..+++.+|.+|.+.|++++|...+++++..+|+++.++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666665554443
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=7.6e-07 Score=91.28 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=98.4
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
+..++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~--- 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN--- 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH---
Confidence 345555667888888888888877654 4455788888888888999999999988888866654
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
..+..+...++++.|+.+.++++...|.+...|+.|+.+|..+|++++|+..++.+
T Consensus 239 ---------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 239 ---------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 67888889999999999999999999999999999999999999999998777644
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.62 E-value=3.7e-06 Score=74.42 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=121.7
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK-QDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~ 498 (608)
..=+.+....-..+.+...|. ..-.+.+|..+...|++.+|..+|++++. +..++.....
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-----------vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lL-------- 128 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-----------VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLL-------- 128 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-----------HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHH--------
Confidence 334445555555555555554 66778899999999999999999999986 4455555443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.+++..+..+++.+|...+++..+.+|. .+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+
T Consensus 129 ----glA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~L 203 (251)
T COG4700 129 ----GLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEML 203 (251)
T ss_pred ----HHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 8899999999999999999999999874 4778888999999999999999999999999887 56778889999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 040048 577 AKIEKWEASMQDYEILKK 594 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~al~ 594 (608)
.++|+.++|..-|..+.+
T Consensus 204 a~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 204 AKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcchhHHHHHHHHHHH
Confidence 999988888766655443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1e-06 Score=74.60 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG---YSKARLRRA 573 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la 573 (608)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34689999999999999999999999975443 568999999999999999999999999999888 778888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 040048 574 DCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~ 594 (608)
.++...|+.++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999987765
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=3.7e-05 Score=71.89 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=166.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 297 KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------------------HRAHHRLANLYLRLGEVEKAIYHFKH 357 (608)
Q Consensus 297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 357 (608)
....|...-.++..+..+++|...+...-+++..+ .......|.+...+|...+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34567777888888999999888877665554221 11233456667777887777766554
Q ss_pred hCCCCCchhHHHHHHHHHHHHHhHHHHHhhc-HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRD-WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
... +........+.+. .+..+..+++-+ ..+.+.++.++...++|.-....+.+.++
T Consensus 148 L~~---------------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 LKT---------------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred HHH---------------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 422 1111111111122 233344444433 34677788899999999999999999999
Q ss_pred CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 040048 437 FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE 516 (608)
Q Consensus 437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e 516 (608)
.+|.. .+.+...+|.+.++.|+.+.|..+|+++-+....-..... ......+.+.++.-.+++.+
T Consensus 206 ~~~e~---------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~------~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 206 YYPEQ---------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG------KIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hCCcc---------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch------hHHHHhhhhhheecccchHH
Confidence 88652 4788889999999999999999999966543221111100 11223478888999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
|...|.+++..+|.++.+.++.|.|+..+|+..+|++.++.++.+.|..
T Consensus 271 a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999975
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.56 E-value=4.3e-05 Score=72.12 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---AH 335 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~ 335 (608)
.-+..|+..|...++.|+|++|+..|+.+....|..+ .+...++.++++.+++++|+..+++-+.+.|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3578899999999999999999999999999988764 57899999999999999999999999999988744 56
Q ss_pred HHHHHH
Q 040048 336 HRLANL 341 (608)
Q Consensus 336 ~~la~~ 341 (608)
+..|.+
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 666666
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.56 E-value=4.4e-07 Score=80.42 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 040048 514 FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ----------FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK-- 581 (608)
Q Consensus 514 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-- 581 (608)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999998887643 5678888999999999999999999999987754
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 582 ---------WEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 582 ---------~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|++|.++|++|.+.+|+|...+..|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78999999999999999998888764
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.53 E-value=2.4e-06 Score=70.91 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY----SKARLRRADCFAK 578 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~ 578 (608)
..|.++...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+. -.++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999999986554 3578899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 040048 579 IEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~P~~ 599 (608)
+|+-+.|...|+.+-++....
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHH
Confidence 999999999999998876543
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=4.4e-07 Score=92.35 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA---RLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+|+++..|+++|.+|..+|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555554432 555555555555555555555555554
No 196
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2e-05 Score=72.40 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHhhcCCCCC
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-AKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~ 531 (608)
..|...+.+|- ..+..+|+.++++++++..+-..... .+.-+..+|.+|... .++++|+.+|+++-+.....
T Consensus 75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~------aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM------AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 33344444443 44888888888888877655443322 233345788888765 89999999999998764322
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 532 ------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-------KARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 532 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
-..+...|..-..+++|.+|+..|++.....-++. +-++.-|.|++-..+.-.+...+++..+++|.
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 24556677777889999999999999887654443 33456788888889999999999999999998
Q ss_pred CHHHH
Q 040048 599 DEEVD 603 (608)
Q Consensus 599 ~~~~~ 603 (608)
..+.+
T Consensus 228 F~dsR 232 (288)
T KOG1586|consen 228 FTDSR 232 (288)
T ss_pred ccccH
Confidence 76544
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=1.4e-06 Score=82.83 Aligned_cols=103 Identities=21% Similarity=0.190 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHH 336 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 336 (608)
+++-+|..|..++..|+|.+|...|..-++..|+. +.++|.||.+++.+|++++|...|..+++-.|+. +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 34458999999999999999999999999999987 5789999999999999999999999999987765 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
.+|.+...+|+.++|...|+++++ -.|..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k-~YP~t 248 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK-RYPGT 248 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-HCCCC
Confidence 999999999999999999999988 56655
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=7.6e-07 Score=90.62 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=66.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040048 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY---RSNKTAALIALGRLLEAVFECREAIRIE 328 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~~ 328 (608)
..|.++++|+++|..|+..|+|++|+.+|+++|+++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 368899999999999999999999999999999999999854 9999999999999999999999999973
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.3e-05 Score=71.43 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH-------------HHHHHHHHHHhHHHHHhhcHHHHHHHHH
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK-------------AKSLQAHLNKCTDAKRTRDWNTLIQETR 397 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 397 (608)
+...|...-.++..+..+++|...+...-. ++..+... .-.....+..+.+....|...+.+.-+.
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~-lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGN-LDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhcc-CCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456677777788888888888877765544 44433111 0011112222333334444444433332
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 398 AAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK 477 (608)
Q Consensus 398 ~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (608)
..... ...+...+......+..++.+++-+ ..+.+.++.++.-.|+|.-.+..+.+
T Consensus 147 ~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl----------------~~Vmy~~~~~llG~kEy~iS~d~~~~ 202 (366)
T KOG2796|consen 147 KLKTV--------VSKILANLEQGLAEESSIRLWRKRL----------------GRVMYSMANCLLGMKEYVLSVDAYHS 202 (366)
T ss_pred HHHHH--------HHHHHHHHHhccchhhHHHHHHHHH----------------HHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 22110 0111111111122233344443322 56677888999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----C--CCCHHHHHHHHHHHHHcCCHHHH
Q 040048 478 AAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----D--PYNSVLLCNRAACRSKLGQFEKA 551 (608)
Q Consensus 478 al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A 551 (608)
.++.+|....... ..+|.+.++.|+.+.|..+|++.-+. + .....+..+.+.+|.-.+++.+|
T Consensus 203 vi~~~~e~~p~L~-----------s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 203 VIKYYPEQEPQLL-----------SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred HHHhCCcccHHHH-----------HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 9998855444432 38999999999999999999955432 2 23456778889999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
...|.+++..+|.++.+..+.|.|+.-+|+..+|++.++.+++..|...
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999999999999999999999999753
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.44 E-value=4.3e-06 Score=72.02 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RA 334 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~ 334 (608)
...+..++..|...+..|+|++|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3567889999999999999999999999999998875 46789999999999999999999999999999874 58
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHhCCCCCchh
Q 040048 335 HHRLANLYLRLGE---------------VEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 335 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~p~~ 366 (608)
++..|.+++.+.. ..+|...|++++. .-|+.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~-~yP~S 132 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR-RYPNS 132 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH-HCcCC
Confidence 9999999998876 6777777777776 55554
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=3.1e-07 Score=72.17 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVR---P-G---YSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p-~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+.++.++|.+|..+|++++|+.+|++++++. + + ...++.++|.++..+|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777777777777777777541 1 1 2456677777777777777777777777765
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.00039 Score=75.62 Aligned_cols=287 Identities=13% Similarity=-0.024 Sum_probs=177.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|..+-+....|..+++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|. .+..+.+-.
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFM 118 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence 5667778888999999999999999998887788888888999999999999999999999999999999 788888888
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh----cHHHHHHHHHHHHHcC-CCChHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR----DWNTLIQETRAAIAGG-ADSAPQIYALQA 415 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~-~~~~~~~~~~la 415 (608)
+|.+-+.|.+-.+.--+..+ ..|........+...+..+......+ -..-|....++.++.. +-....-....-
T Consensus 119 ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 88888887654333333322 33443222222222111111111111 1123445556666555 333333344455
Q ss_pred HHHHHcCChHHHHHHhhc-CCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-HH
Q 040048 416 EALLKLHKHQEADETLKN-GPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV-MR 493 (608)
Q Consensus 416 ~~~~~~g~~~eA~~~l~~-al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~ 493 (608)
.++...|.+++|.+.+.. ..+..+. .+...-......+...+++.+-.+...+++...+++...+.- +.
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~---------~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~ 268 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTS---------ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVF 268 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccc---------cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 677889999999999833 3333332 124455567778889999999999999999999997222110 00
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-LLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
++-...--...+..+...+..+..++...+.+......+. ++..+-.-+...|+.++++-.|-+-
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 0000000001233334445556666666666655333333 2333333334677888776655443
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=2.9e-05 Score=68.87 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=101.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcH
Q 040048 310 ALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDW 389 (608)
Q Consensus 310 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (608)
++=+.+.++....+.+.+.|.. .-.+.||..+.++|++.+|..+|.+++..+.-.
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~------------------------ 122 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH------------------------ 122 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC------------------------
Confidence 3334444444444445555542 345566666666677777776666665522222
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHH
Q 040048 390 NTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE 469 (608)
Q Consensus 390 ~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 469 (608)
.+.++..++...+..+++.+|...+++..+..|... .+...+.+|..+...|++.
T Consensus 123 -----------------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--------~pd~~Ll~aR~laa~g~~a 177 (251)
T COG4700 123 -----------------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--------SPDGHLLFARTLAAQGKYA 177 (251)
T ss_pred -----------------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--------CCCchHHHHHHHHhcCCch
Confidence 246667777778888888888888888777776532 2566777888888888888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525 (608)
Q Consensus 470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 525 (608)
+|...|+.++...|+..... ..+..+.++|+..+|..-+....
T Consensus 178 ~Aesafe~a~~~ypg~~ar~-------------~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 178 DAESAFEVAISYYPGPQARI-------------YYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHHHhCCCHHHHH-------------HHHHHHHHhcchhHHHHHHHHHH
Confidence 88888888888888754432 45677788888777766655444
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=9e-06 Score=81.99 Aligned_cols=312 Identities=11% Similarity=0.044 Sum_probs=149.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh-----CC----------C
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL-IALGRLLEAVFECREAIRI-----EP----------H 330 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~-----~p----------~ 330 (608)
+...+...+..+.|+.-++.++..-.++..+..++++.+.+. +..|.... ....+....+ .| +
T Consensus 20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~ 98 (696)
T KOG2471|consen 20 LLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQ 98 (696)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhc
Confidence 334455567788999999999988888877777667777654 44444322 1122221111 11 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHH---HHHHcCCCCh
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETR---AAIAGGADSA 407 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~---~al~~~~~~~ 407 (608)
....+++.|.+|+...++..|+.........+.+-. .......-+..-..+......++|+.++. +.+.....
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le--~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~-- 174 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE--SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM-- 174 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 244678888889888888888887666543122111 11111112222233333444444443322 22111000
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
...|+...+-.....+.....+.....-. ....+.......++.+.+...+....+.++.+..+.+.
T Consensus 175 -----------~~~gn~~~~nn~~kt~s~~aAe~s~~~a~--~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~ 241 (696)
T KOG2471|consen 175 -----------KLVGNHIPANNLLKTLSPSAAERSFSTAD--LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSM 241 (696)
T ss_pred -----------cccccccchhhhcccCCcchhcccchhhc--cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcH
Confidence 00111111111111111000000000000 00222333333444455555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL-GLDPY--------NSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
... ..+..++..|++.+|.+.+...- ...|. ...+|+++|.+++++|.|.-+..+|.+|
T Consensus 242 ~l~------------LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA 309 (696)
T KOG2471|consen 242 ALL------------LKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA 309 (696)
T ss_pred HHH------------HHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence 433 45556666666666665554321 11111 1234556666666666666666666666
Q ss_pred Hh-c--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhhC
Q 040048 559 LN-V--------RP---------GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQE 608 (608)
Q Consensus 559 l~-~--------~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~e 608 (608)
+. . .| ...+..|+.|..|...|+.-.|.++|.++....-.+|.+|..|.|
T Consensus 310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 63 0 11 123455666666666666666666666666666666666665543
No 205
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.36 E-value=7.8e-06 Score=67.97 Aligned_cols=95 Identities=26% Similarity=0.318 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANL 341 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~ 341 (608)
.+-..|..+...|+.+.|++.|.++|.+.|..+.+|.+++..+.-+|+.++|+..+++++++..+. -.++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999999999999999999999999986554 3478899999
Q ss_pred HHHcCCHHHHHHHHHHhCC
Q 040048 342 YLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~ 360 (608)
|..+|+.+.|...|+.+.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHhCchHHHHHhHHHHHH
Confidence 9999999999999999866
No 206
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.0015 Score=66.47 Aligned_cols=326 Identities=14% Similarity=0.006 Sum_probs=192.5
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCC----hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH
Q 040048 263 DPETLKIMGNEDY-KAGNFAEALALYDAAISID---PNK----ASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHR 333 (608)
Q Consensus 263 ~~~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~ 333 (608)
.+.....+|.+++ ...+++.|...++++..+. |.. ..+...++.+|.... .+..|...+++++++....+.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 3455677777654 5788999999999988764 332 345778888888876 788888999999998777653
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH--HHHhhcHH---HHHHHHHHHHHcCC
Q 040048 334 ----AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD--AKRTRDWN---TLIQETRAAIAGGA 404 (608)
Q Consensus 334 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~---~A~~~~~~al~~~~ 404 (608)
..+.|+.++.-..++..|++.+.-... ..+......+...+.+... .....+.. .+......+.+...
T Consensus 125 wsckllfQLaql~~idkD~~sA~elLavga~---sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~ 201 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDKDFPSALELLAVGAE---SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNIS 201 (629)
T ss_pred hhHHHHHHHHHHHhhhccchhHHHHHhcccc---ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccC
Confidence 456788888888999999988654322 2232333344444444332 22222221 22222222222111
Q ss_pred CChH------HHHHHH-HHHHH----------------------------------------------------------
Q 040048 405 DSAP------QIYALQ-AEALL---------------------------------------------------------- 419 (608)
Q Consensus 405 ~~~~------~~~~~l-a~~~~---------------------------------------------------------- 419 (608)
.+.. ..|..+ -..|.
T Consensus 202 sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~t 281 (629)
T KOG2300|consen 202 SDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVT 281 (629)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhH
Confidence 1100 000000 01111
Q ss_pred -----HcCChHHHHHHhhcCCCCCCcccccc-cC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048 420 -----KLHKHQEADETLKNGPNFDVDETTRF-FG---PIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490 (608)
Q Consensus 420 -----~~g~~~eA~~~l~~al~~~p~~~~~~-~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 490 (608)
-.|-+++|.++-++++....+....- .. ..-....+-.+..+-.-.|++.+|++....+.......+...
T Consensus 282 v~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~- 360 (629)
T KOG2300|consen 282 VIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL- 360 (629)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH-
Confidence 12334444443333332210000000 00 000123344566666778999999998888776554443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 040048 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-N--SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-- 565 (608)
Q Consensus 491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 565 (608)
+-+.-.+..+..+|.....-+.++.|...|..|.+.... + +.+-.++|..|...|+-+.-.+.++ .+.|.+
T Consensus 361 -Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~ 436 (629)
T KOG2300|consen 361 -LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTN 436 (629)
T ss_pred -HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCC
Confidence 112234556678899889999999999999999987442 2 3345578999999877544333332 344442
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 566 --------SKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 566 --------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
..+++..|...+.++++.||...+.+.+++.
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4567888999999999999999999999987
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.3e-06 Score=80.25 Aligned_cols=94 Identities=22% Similarity=0.415 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
..-|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++.+++.+.....+++++.|+...+++.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 040048 582 WEASMQDYEILKKE 595 (608)
Q Consensus 582 ~~~A~~~~~~al~l 595 (608)
|++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999664
No 208
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.35 E-value=4.7e-07 Score=91.72 Aligned_cols=106 Identities=28% Similarity=0.492 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 582 (608)
..+...+..+.|+.|+..|.+||+++|+.+..+-+.+.++.+.+++..|+..+.+|++++|....+|+..|.+...++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 66788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHhhC
Q 040048 583 EASMQDYEILKKEAPDDEEVDQALQE 608 (608)
Q Consensus 583 ~~A~~~~~~al~l~P~~~~~~~~L~e 608 (608)
.+|...|++...+.|+++.+.+.+.|
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 99999999999999999999988754
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.32 E-value=0.0013 Score=65.12 Aligned_cols=268 Identities=16% Similarity=0.095 Sum_probs=190.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048 303 NKTAALIALGRLLEAVFECREAIRIEPHY--HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380 (608)
Q Consensus 303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 380 (608)
..|.+-...|+-..|.+.-.++-++-..+ +-++..-++.-.-.|+++.|.+-|+..+. +|+.. +.-+..+.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~--dPEtR-----llGLRgLy 161 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD--DPETR-----LLGLRGLY 161 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc--ChHHH-----HHhHHHHH
Confidence 34556666788888888888877544333 44566667777888999999999998874 44431 33344455
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC---CCcccccccCCCCcHHHHHH
Q 040048 381 TDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF---DVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p~~~~~~~~~~~~~~~~~~ 457 (608)
....+.|+.+.|+.+.+.+....|... -.....-...+..|+|+.|+.+.+..... .++..+.. .+.++..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~-----rAvLLtA 235 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERS-----RAVLLTA 235 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHH-----HHHHHHH
Confidence 566788999999999999998888764 34444456677899999999988765432 22211100 0222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN 537 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 537 (608)
.+.... .-+...|...-.+++++.|+...... .-+..+++.|+..++-.+++.+.+..|. +.++
T Consensus 236 kA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav------------~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia-- 299 (531)
T COG3898 236 KAMSLL-DADPASARDDALEANKLAPDLVPAAV------------VAARALFRDGNLRKGSKILETAWKAEPH-PDIA-- 299 (531)
T ss_pred HHHHHh-cCChHHHHHHHHHHhhcCCccchHHH------------HHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--
Confidence 332222 34688999999999999999877664 6789999999999999999999999885 3322
Q ss_pred HHHHHHHcCCHHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 538 RAACRSKLGQFEKAIEDCN---AALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~---~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
+..++.+.|+ .++.-++ +...+.|++.+..+.++..-+.-|++..|..--+.+..+.|...-
T Consensus 300 ~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 300 LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 2233444554 4444444 445578999999999999999999999999999999999987543
No 210
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.5e-06 Score=79.86 Aligned_cols=97 Identities=28% Similarity=0.437 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
++-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.|++++.+++.+...+.++++++|+...+++.+|.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCC
Q 040048 344 RLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~ 360 (608)
....|++|+..+.++..
T Consensus 90 ~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hhccccHHHHHHHHHHH
Confidence 99999999999999844
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00022 Score=72.25 Aligned_cols=314 Identities=17% Similarity=0.061 Sum_probs=206.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC------C--HHHHHHHHHHH
Q 040048 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREA-IRIEPH------Y--HRAHHRLANLY 342 (608)
Q Consensus 272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~p~------~--~~~~~~la~~~ 342 (608)
..+....+...+..-.+.++.+..+.+.+....+..++..|++.+|.+.+... +...|. . -..|.++|.++
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 34455666666666666677666677777777888888888888887776543 111222 1 12456778888
Q ss_pred HHcCCHHHHHHHHHHhCCCC--------Cchh---HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEA--------DQVD---IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIY 411 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~--------~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 411 (608)
+++|.|.-+..+|.++++.. .|.. ........+.++.|..+...|+...|.++|.++......+ |.+|
T Consensus 294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlW 372 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLW 372 (696)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHH
Confidence 88888888777777776311 1111 1233457889999999999999999999999998876555 6788
Q ss_pred HHHHHHHHHcCC-------------------------------------------------hHHHHHHhhcCCCCCCccc
Q 040048 412 ALQAEALLKLHK-------------------------------------------------HQEADETLKNGPNFDVDET 442 (608)
Q Consensus 412 ~~la~~~~~~g~-------------------------------------------------~~eA~~~l~~al~~~p~~~ 442 (608)
..+|++.....+ .+-|.-+++.++-+-|+..
T Consensus 373 LRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q 452 (696)
T KOG2471|consen 373 LRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQ 452 (696)
T ss_pred HHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhh
Confidence 888888763211 1223344444443321100
Q ss_pred ----------------------------ccccC--------CC-----------CcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 443 ----------------------------TRFFG--------PI-----------GNANLLVVRAQVNLACGRFEDALAAI 475 (608)
Q Consensus 443 ----------------------------~~~~~--------~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (608)
+.+.. +. -...++-..+.+-..+|+.-.|+..-
T Consensus 453 ~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a 532 (696)
T KOG2471|consen 453 DLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAA 532 (696)
T ss_pred cchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 00000 00 01345566777788899999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh------c-----------------CCCC--
Q 040048 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL------G-----------------LDPY-- 530 (608)
Q Consensus 476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al------~-----------------~~p~-- 530 (608)
.+.++.. +-..++..+. +...|.+++.+.+..+|...+.--+ . ++|.
T Consensus 533 ~kLLq~~-~lS~~~kfLG-------HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~ 604 (696)
T KOG2471|consen 533 TKLLQLA-DLSKIYKFLG-------HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG 604 (696)
T ss_pred HHHHhhh-hhhhHHHHHH-------HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence 9988753 3333443332 2356677778888888888765411 0 1110
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 531 -------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP--GYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 531 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
....+++||.++.-.|++++|..++..|..+-+ ..+.+....-.+-.++|+...|...+++.--
T Consensus 605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 134678999999999999999999999998877 4566666666667789999999988887643
No 212
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.0036 Score=64.70 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=60.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
.+|.|.++|+.|-..+-.+ -+++....|++.+...|..+.+|.......+...+|+.....|.++|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4588999999998877666 999999999999999999999999999999999999999999988875
No 213
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.9e-06 Score=76.26 Aligned_cols=104 Identities=27% Similarity=0.421 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGL--------DPYN----------SVLLCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
+..+...|+-+++.|+|.+|...|..|+.. .|.. ..++.+.+.|++..|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344468899999999999999999998742 4443 3578899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
...|.+..+|+.+|.+....=+..+|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999997654
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.27 E-value=1.9e-06 Score=67.61 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C-C---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISID---P-N---KASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
+.++..+|.++...|+|++|+.+|++++++. + + .+.++.++|.++..+|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578888999999999999999999988651 1 1 2456888888888888888888888888765
No 215
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.26 E-value=0.00032 Score=74.16 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 564 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
..+.++..++..+...|++++|-+.|-.+++++.-|..
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence 34678889999999999999999999999998876544
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00023 Score=66.06 Aligned_cols=208 Identities=14% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ 414 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l 414 (608)
|..-+.+|....+|++|..++.++.+ ...++...+.....+-..+.....+..|.++...++++
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA--------------- 97 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA--------------- 97 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------------
Confidence 33344555555566666665555543 22222222333333333444444455555555555544
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
...|.+.|..+-|-..++++-+ .....++++|+.+|++++.+...+.....
T Consensus 98 s~lY~E~GspdtAAmaleKAak-------------------------~lenv~Pd~AlqlYqralavve~~dr~~m---- 148 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK-------------------------ALENVKPDDALQLYQRALAVVEEDDRDQM---- 148 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH-------------------------HhhcCCHHHHHHHHHHHHHHHhccchHHH----
Confidence 3456666666666555554432 24456788999999988877655544432
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV----RPG 564 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~ 564 (608)
..+.+...++++.+..++++|-..+.+-... .+.....+.....+|+...+|..|..+|+..-++ .++
T Consensus 149 --a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 149 --AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred --HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 2334457788888889998888777664432 2333345555556666677999999999987765 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 565 YSKARLRRADCFAKIEKWEASMQDYE 590 (608)
Q Consensus 565 ~~~a~~~la~~~~~~g~~~~A~~~~~ 590 (608)
+..+.-+|-..| ..|+.++..+.+.
T Consensus 227 d~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 227 DSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 555666655444 4577776665544
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.22 E-value=4.8e-06 Score=73.95 Aligned_cols=86 Identities=31% Similarity=0.366 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 040048 280 FAEALALYDAAISIDPNKASYRSNKTAALIALGR----------LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGE-- 347 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 347 (608)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|+++|.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999887643 5778889999999999999999999999987753
Q ss_pred ---------HHHHHHHHHHhCCCCCchh
Q 040048 348 ---------VEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 348 ---------~~~A~~~~~~al~~~~p~~ 366 (608)
|++|..+|+++.. .+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~-~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD-EDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-H-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 4445555555554 45544
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.18 E-value=0.00018 Score=74.43 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=93.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 582 (608)
.|..+...|+...|++++..|+...|.. ...+.+||.++.+.|-.-.|-..+.+++.+....+..++.+|..|..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 3445566899999999999999998865 356789999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 583 EASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 583 ~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+.|++.|+.|++++|+++++.+.|.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999999999887664
No 219
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0052 Score=62.67 Aligned_cols=207 Identities=12% Similarity=-0.012 Sum_probs=137.6
Q ss_pred HhhcHHHHHHHHHHHHHcCC-----C-Ch-------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCc
Q 040048 385 RTRDWNTLIQETRAAIAGGA-----D-SA-------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGN 451 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~-----~-~~-------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~ 451 (608)
-.|-++++.++-++++.... + .. ...+..++.+-.-.|++.+|++.+..+.+..........-....
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 34667777777777765421 1 11 12344456667778999999887665544321111100101123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
+.+...+|......+.++.|...|..+.++-.. +..+... .++|..|...|+-+.-.+.++..-..+..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n----------lnlAi~YL~~~~~ed~y~~ld~i~p~nt~ 436 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN----------LNLAISYLRIGDAEDLYKALDLIGPLNTN 436 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH----------HhHHHHHHHhccHHHHHHHHHhcCCCCCC
Confidence 778888999889999999999999999886443 2223322 38899999988766555555443322211
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 531 N-------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 531 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
. ..+++..|...+..+++.||...+.+.++.... ..-.+..|+.+..-.|+..++.+...-++++..
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 1 457778888889999999999999999987521 133456788889999999999998888887654
Q ss_pred CCHH
Q 040048 598 DDEE 601 (608)
Q Consensus 598 ~~~~ 601 (608)
+-++
T Consensus 517 Ki~D 520 (629)
T KOG2300|consen 517 KIPD 520 (629)
T ss_pred cCCC
Confidence 4433
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.11 E-value=0.00079 Score=69.13 Aligned_cols=60 Identities=18% Similarity=0.037 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK 477 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (608)
+...+|.+..++|+.+||++.++..++..|.. .+..+..++..+++..+.|.++...+.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~--------~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNL--------DNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 33445566666666666666666665554432 1245555666666666666666555554
No 221
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.07 E-value=6.6e-06 Score=83.58 Aligned_cols=103 Identities=31% Similarity=0.421 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
++.+-..|+.++..++|+.|+..|.+||+++|+.+.++.+++.++...+++..|+..+.++++++|....+|+..|..+.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhH
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDI 367 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~ 367 (608)
.++++.+|+..|+.... +.|++.
T Consensus 84 ~l~~~~~A~~~l~~~~~-l~Pnd~ 106 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKK-LAPNDP 106 (476)
T ss_pred hHHHHHHHHHHHHHhhh-cCcCcH
Confidence 99999999999999998 999884
No 222
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00011 Score=72.92 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCCCCC
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK-QAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~ 531 (608)
-+|..+.....+.+..+.|...|.+|++..+....++. ..|.+.+. .++.+.|..+|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~------------~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYV------------AYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHH------------HHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 35777778888888899999999999865555566654 66777666 566666999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS---KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
..+|......+...|+.+.|...|++++..-|... ..|......-.+.|+.+.....++++.+..|++..+..
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999999999999999876654 67888888889999999999999999999999776654
No 223
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.04 E-value=0.0059 Score=63.01 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=114.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIE--------PHYHRAHHRLAN 340 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~ 340 (608)
.+.+..+.|+|+. +...+...+. .....+..+......++++++..+++++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3567778888888 3333333322 33566666777778899999988888876531 122222222222
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH-HHHhhcHHHHHHHHHHHHH--cCCCChHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD-AKRTRDWNTLIQETRAAIA--GGADSAPQIYALQAEA 417 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~la~~ 417 (608)
-+..+.+.+++......... . +.. .......|-.+-.. ......|+..+..-.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~-~-~~~--~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQ-N-PQD--LKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcc-c-HHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 22333455555555433211 0 111 11112222222111 1112233333333333333 1244456788999999
Q ss_pred HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK 480 (608)
Q Consensus 418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (608)
..+.|.++.|...+.++....+..... .+.+.+..+.++...|+..+|+..++..+.
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESL------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCC------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998865332110 267888899999999999999999999888
No 224
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.02 E-value=0.0063 Score=67.66 Aligned_cols=321 Identities=16% Similarity=0.046 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCC--h----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 040048 262 MDPETLKIMGNEDY-KAGNFAEALALYDAAISIDPNK--A----SYRSNKTAALIALGRLLEAVFECREAIRIEPHY--- 331 (608)
Q Consensus 262 ~~~~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~p~~--~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--- 331 (608)
.++.+.+.+|.+++ ...++++|..++++++.+...+ . .+.+.++.++.+.+... |+..+++.++.....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 34567889999988 7899999999999998887442 2 33567788888888777 999999999865441
Q ss_pred HH-HHHHH--HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-----
Q 040048 332 HR-AHHRL--ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG----- 403 (608)
Q Consensus 332 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----- 403 (608)
.. ..+.+ ...+...+++..|++.++.... ...........+...+..+.+....+..+++++.+.+++...
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~-~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQ-LANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 11 12222 2333334799999999988765 332112222334444555566667777777877777764321
Q ss_pred -CC-ChH--HHHHHHH--HHHHHcCChHHHHHHhhcC---C----CC------CCcc------------------ccccc
Q 040048 404 -AD-SAP--QIYALQA--EALLKLHKHQEADETLKNG---P----NF------DVDE------------------TTRFF 446 (608)
Q Consensus 404 -~~-~~~--~~~~~la--~~~~~~g~~~eA~~~l~~a---l----~~------~p~~------------------~~~~~ 446 (608)
+. ..+ .++..+- .++...|+++.+...+++. + .. +++. ...|.
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 11 111 2333333 3445667766665543321 1 11 0110 01111
Q ss_pred CCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------H---HHHHHH--HHHHHHHHHHHHHHHHHc
Q 040048 447 GPI-GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK---------E---VNMVMR--KAKGVAAARSNGNALFKQ 511 (608)
Q Consensus 447 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~---~~~~l~--~~~~~~~~~~lg~~~~~~ 511 (608)
... -..-+|..-|...+..+..++|.++++++++.-.+.. . +..... ..-....+...+.+.+-.
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence 100 0123344455666777777788888888876322211 0 100001 111233456788888999
Q ss_pred CCHHHHHHHHHHhhcCC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCC---HHHHHH
Q 040048 512 AKFSEAAAAYGDGLGLD---P------YNSVLLCNRAACRSKLGQFEKAIEDCN--------AALNVRPGY---SKARLR 571 (608)
Q Consensus 512 g~~~eA~~~~~~al~~~---p------~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---~~a~~~ 571 (608)
+++..|....+.+.... | ..+..++..|..+...|+.+.|+..|. .+....+.. .-+..+
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 99999999988777542 2 236788999999999999999999998 333333332 234467
Q ss_pred HHHHHHHcCCHHH
Q 040048 572 RADCFAKIEKWEA 584 (608)
Q Consensus 572 la~~~~~~g~~~~ 584 (608)
+..++...+.-..
T Consensus 455 l~~I~~~~~~~~~ 467 (608)
T PF10345_consen 455 LAIILQYESSRDD 467 (608)
T ss_pred HHHHhHhhcccch
Confidence 7777776665433
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=7.6e-05 Score=69.15 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
..|...+.+|...+++++|..++.++.+-...+...|. -+.++-..+.+.-....+.++..+|+++..+.-.+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh----AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH----AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 44555577788888888888888888754443322222 26677777888888899999999999998765333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNV- 561 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 561 (608)
-. +......+--..+.-+.++|+++|++++.+-..+ .+.+-..+.++.+...|++|-..+.+-...
T Consensus 108 dt-------AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 108 DT-------AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred ch-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 11 0111244445567788999999999998763322 456677889999999999998888775432
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHh
Q 040048 562 -----RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE----APDDEEVDQAL 606 (608)
Q Consensus 562 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~L 606 (608)
.++...++...-.+|....+|..|..+|+...++ .|++......|
T Consensus 181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 3444556667677777788999999999997765 34444444443
No 226
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.02 E-value=0.0017 Score=71.07 Aligned_cols=280 Identities=13% Similarity=-0.008 Sum_probs=175.1
Q ss_pred chhHHHHhhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHcC-----CH
Q 040048 250 EPTSLCRALSTRMDPETLKIMGNEDYKA-----GNFAEALALYDAAISI-----DPNKASYRSNKTAALIALG-----RL 314 (608)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~ 314 (608)
++..+++......+..+...+|.+++.- .|.+.|+.+|+.+... .-..+.+.+.+|.+|.... ++
T Consensus 230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 4577777777778888888888888754 6889999999988771 1124567788888888743 66
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 315 LEAVFECREAIRIEPHYHRAHHRLANLYLRLG---EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 315 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
..|+.+|.++-... ++.+.+.+|.+|..-. ++..|.++|..+.. . .+ .
T Consensus 310 ~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~--G~------~------------------ 360 (552)
T KOG1550|consen 310 EKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-A--GH------I------------------ 360 (552)
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-c--CC------h------------------
Confidence 77888888887654 4567888888887655 46678888877754 1 11 1
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc-C
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-G 466 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~-g 466 (608)
...+.++.+|.. ..+...|..++.++.+... +.+...++.++..- +
T Consensus 361 -----------------~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~------------~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 361 -----------------LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN------------PSAAYLLGAFYEYGVG 411 (552)
T ss_pred -----------------HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC------------hhhHHHHHHHHHHccc
Confidence 223333333332 2345566666666655432 34344444443322 6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR 542 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 542 (608)
+++.+...+....++.-........+ +......... ..+...+...+.++... .+..+...+|.+|
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y 481 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAY--------LLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYY 481 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHH--------HHHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhccee
Confidence 66666555554444332222211100 0000101111 12455566666666543 5677888888888
Q ss_pred HHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH
Q 040048 543 SKL----GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI---EKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 543 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~l~P~~~ 600 (608)
..- .+++.|...|.++.... ..+.+++|.++..- ..+..|.++|.++.+.+....
T Consensus 482 ~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 482 YYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred eecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhh
Confidence 765 35899999999998876 88899999888652 227899999999988766543
No 227
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.2e-05 Score=73.90 Aligned_cols=105 Identities=29% Similarity=0.501 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
..+..-|+-|++..+|..|+..|.+.|+....+ +.+|.++|.|.+.+|+|..|+..+.+++.++|.+..++++=|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344578999999999999999999999874433 6789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 575 CFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
|++.+.++.+|..+.+..++++-+...+.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999888888877765554443
No 228
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0025 Score=58.95 Aligned_cols=186 Identities=17% Similarity=0.127 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDP------NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH----- 332 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----- 332 (608)
++.+..-|+.|....+|..|=..|.++-+..- +-+..|...+.||. .++.++|+.++++++++..+-.
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455567777777888888888877765421 12345666666664 4599999999999998865542
Q ss_pred -HHHHHHHHHHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048 333 -RAHHRLANLYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI 410 (608)
Q Consensus 333 -~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 410 (608)
.-+..+|.+|..- .++++|+.+|+++-+ ....+......-..++..+.....+++|.+|+..|++.....-++...-
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae-~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAE-YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHH-HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 3455788888654 888888888888765 3333322233334444445555555666666666665544322221000
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN 489 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 489 (608)
| .--..++.-|.+++...+.-.+...+++-.+++|...+..
T Consensus 192 y--------------------------------------s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 192 Y--------------------------------------SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred h--------------------------------------HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 0 0133445566677777777777777777777888765543
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=1.2e-05 Score=55.03 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKT 305 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la 305 (608)
++|+.+|..+...|++++|+.+|+++++.+|+++.+|..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 44555555555555555555555555555555555555554
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.98 E-value=1.5e-05 Score=54.61 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 534 LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 534 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444444
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.96 E-value=0.0069 Score=64.75 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=117.6
Q ss_pred HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH-----HHHH----HcCCHHHHHHHHHHHHHhCCCChH
Q 040048 417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA-----QVNL----ACGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la-----~~~~----~~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
+.--.|+-+.++..+.++.+. .+- .++ ...+..++ ..+. .....+.|.+.+....+..|+..-
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~-~~i----~~~---la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l 268 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKS-ENI----RSP---LAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL 268 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhcc-CCc----chH---HHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH
Confidence 333468899999999988762 221 110 11111111 1111 245678899999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
... ..|.++...|+.++|++.|++++..... ....++.+|.++..+++|++|..+|.+.++.+.
T Consensus 269 fl~------------~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 269 FLF------------FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHH------------HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 654 8899999999999999999999864332 245788999999999999999999999999754
Q ss_pred CC-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 040048 564 GY-SKARLRRADCFAKIEKW-------EASMQDYEILKKEA 596 (608)
Q Consensus 564 ~~-~~a~~~la~~~~~~g~~-------~~A~~~~~~al~l~ 596 (608)
-. ....|..|.|+...|+. ++|.++|.++-.+.
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 43 33447789999999999 88888888876543
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6e-05 Score=69.76 Aligned_cols=103 Identities=22% Similarity=0.232 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCh----------hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKA----------SYRSNKTAALIALGRLLEAVFECREA 324 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~----------~~~~~la~~~~~~g~~~eA~~~~~~a 324 (608)
...++...|+-++..|+|.+|...|..|+.. .|..+ ..+.+++.|+...|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999753 34443 45789999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+..+|.+..+++..|.++...=+..+|...|.++++ ++|.-
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~-ldpsl 297 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE-LDPSL 297 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cChhh
Confidence 999999999999999999999999999999999999 88865
No 233
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.94 E-value=0.0048 Score=68.58 Aligned_cols=303 Identities=16% Similarity=0.145 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhcCCC----ChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CH----HHHHHHHHHHHHcCCH
Q 040048 280 FAEALALYDAAISIDPN----KASYRSNKTAALI-ALGRLLEAVFECREAIRIEPH--YH----RAHHRLANLYLRLGEV 348 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~ 348 (608)
...|+.|++-+++..+- .+.+++.+|.+|+ ...++++|..++++++.+... .. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34688889888852222 2457899999888 689999999999999887643 32 3556778899888877
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC---CChHHH--HHHHHHHHHHcCC
Q 040048 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA---DSAPQI--YALQAEALLKLHK 423 (608)
Q Consensus 349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~--~~~la~~~~~~g~ 423 (608)
. |+..+++.++.........+. ....+.........+|+..|+..++....... +....+ ....+.+....+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 7 999999988722221111111 11112223333333899999999998887642 222222 3334556666777
Q ss_pred hHHHHHHhhcCCC------CCCcccccccCCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHhCCCCh------
Q 040048 424 HQEADETLKNGPN------FDVDETTRFFGPIGNANLLVVRAQ--VNLACGRFEDALAAIQKA---AKQDSNNK------ 486 (608)
Q Consensus 424 ~~eA~~~l~~al~------~~p~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~p~~~------ 486 (608)
.+++++.++++.. .+++.. .....+|..+-. ++...|+++.+...+++. +....+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~------~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVH------IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCC------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 7778777766522 222210 012344444443 455677776666554443 33221111
Q ss_pred -H-------------------HHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----C---C---CC----
Q 040048 487 -E-------------------VNMVMRK-AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----D---P---YN---- 531 (608)
Q Consensus 487 -~-------------------~~~~l~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~---p---~~---- 531 (608)
+ ...++.. --.+..|..-|......+..++|.+++.++++. . + ..
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~ 348 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSE 348 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence 0 0000000 011334445567777777777888888777753 1 1 10
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 532 ------------SVLLCNRAACRSKLGQFEKAIEDCNAALNVR---PG------YSKARLRRADCFAKIEKWEASMQDYE 590 (608)
Q Consensus 532 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~a~~~la~~~~~~g~~~~A~~~~~ 590 (608)
..+++.++.+.+-.+++..|....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1245567888888999999999998887653 22 36788999999999999999999998
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.94 E-value=0.014 Score=61.52 Aligned_cols=310 Identities=12% Similarity=0.035 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHh
Q 040048 280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN-LYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 358 (608)
.+.+...|...|...|.....|...|..-.++|..+.+++.|++++.--|-..+.|..+-. +-...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3667777888888889888889999999999999999999999999988877777765443 334557777777788888
Q ss_pred CCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-----cCChHHHHHHhhc
Q 040048 359 GPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-----LHKHQEADETLKN 433 (608)
Q Consensus 359 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-----~g~~~eA~~~l~~ 433 (608)
+. ....+.........++ ......++|......|++.++..-......+...-...-. +...+++...-..
T Consensus 141 ~~-~vG~dF~S~~lWdkyi---e~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 141 KS-YVGLDFLSDPLWDKYI---EFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HH-hcccchhccHHHHHHH---HHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 76 3333322222222222 1225567788888888888776322211111111111111 1222222222111
Q ss_pred CCCC-------CCcc-----cccccCCC---CcHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHH
Q 040048 434 GPNF-------DVDE-----TTRFFGPI---GNAN-----LLVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEV 488 (608)
Q Consensus 434 al~~-------~p~~-----~~~~~~~~---~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 488 (608)
.... .|.+ ......+. .... .....=.++.......+.+-.++..+.. .|.+..
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a- 295 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA- 295 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH-
Confidence 1100 0000 00000000 0001 0011111222223333344444444331 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHH
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV-RPGYSK 567 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 567 (608)
....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|+.+.
T Consensus 296 --------ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 296 --------QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred --------HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence 12334456677778999999999999999888888999999999999999999999888888876 467788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
.+..-+.+-...|++..|...|+++.+..|+..++
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 88888888899999999999999999888876654
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0022 Score=62.31 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=121.2
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-DSNNKEVNMVMR 493 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~ 493 (608)
+.++...|++.+|....++.++..|.+ .-++..--.+++.+|+...-...+++++.. +++.+-..++
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv-- 177 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYV-- 177 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh----------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHH--
Confidence 455667788888888888888888876 455555666778888888888888888876 5555433221
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY----SKAR 569 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~ 569 (608)
.-.++..+...|-|++|.+..++++++++.+.++...++.++...|++.++.+...+.-..-... ..-|
T Consensus 178 -------~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 178 -------HGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred -------HHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 12567778888999999999999999999999999999999999999999988887654332211 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al 593 (608)
..-|.++..-+.|+.|++.|.+-+
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHH
Confidence 677888888899999999887644
No 236
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00011 Score=71.02 Aligned_cols=103 Identities=24% Similarity=0.339 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 338 (608)
.++.+..-|+.|++..+|..|+.+|.+.|...-.+ +..|.++|.|.+..|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 46678889999999999999999999999875444 45699999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
|.|++.+.++.+|...++..+. ++.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~-~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ-IDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh-hhHHH
Confidence 9999999999999999999876 54433
No 237
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.85 E-value=0.00077 Score=67.00 Aligned_cols=137 Identities=8% Similarity=-0.073 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA-LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
+|..+.....+.+..+.|..+|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577778888888889999999999997766678899999999777 5566669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 406 (608)
.|+.+.|...|++++..+.+.. . .-..|......-...|+++.......++.+..|+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~-~---~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK-Q---SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH-H---CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchh-H---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998433332 1 12334444444556688888888888888877664
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.83 E-value=1.8e-05 Score=50.64 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 555 CNAALNVRPGYSKARLRRADCFAKIEKWEASM 586 (608)
Q Consensus 555 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 586 (608)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.82 E-value=0.00087 Score=68.81 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALNV-RPGYSKARLRRADCFAK 578 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~ 578 (608)
..+|.+..+.|+.+||++.|+..++..|. +..++.+|..++..++.|.++...+.+--++ -|..+...+..|.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 37888999999999999999999887664 4568888999999999999988888886443 25555555555554433
Q ss_pred -cCC---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 579 -IEK---------------WEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 579 -~g~---------------~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
.++ -..|++.+.+|++.+|.-+.....
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 122 234778899999999987765544
No 240
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.82 E-value=0.0012 Score=70.01 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHH
Q 040048 301 RSNKTAALIALGRLLEAVFECRE------AIRI----EPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAK 369 (608)
Q Consensus 301 ~~~la~~~~~~g~~~eA~~~~~~------al~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~ 369 (608)
|-.-|.+|.+..++++|+++|++ ++++ .|.. ...-...|.-+...|+++.|+.+|-.+--
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 34445666666777888888764 3332 2322 12233456777788888888888866422
Q ss_pred HHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048 370 AKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
.............|.+|+.+++..-..... ...|-.++.-|...|+|+-|.++|.++-.
T Consensus 735 ------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~------------- 793 (1636)
T KOG3616|consen 735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADL------------- 793 (1636)
T ss_pred ------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcch-------------
Confidence 223334455667888888887766544322 24566778888889999999988877532
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAA 479 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (608)
....-..|.+.|++++|..+-+++.
T Consensus 794 -----~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 794 -----FKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred -----hHHHHHHHhccccHHHHHHHHHHhc
Confidence 2224456778888888887776653
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.80 E-value=4.1e-05 Score=49.08 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=2.1e-05 Score=50.31 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=18.3
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHH
Q 040048 287 YDAAISIDPNKASYRSNKTAALIALGRLLEAV 318 (608)
Q Consensus 287 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 318 (608)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.76 E-value=7.1e-05 Score=47.87 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.+|+.+|.++..+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466677777777777777777777777777764
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.73 E-value=0.0069 Score=62.47 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN----KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
....+...+.+....|+++.|...+.++....+.. +.+. ...+.++...|+..+|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~------------~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF------------LEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 37889999999999999999999999998865322 2332 2678999999999999999988877
Q ss_pred C---CC-------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCH
Q 040048 527 L---DP-------------------------------YNSVLLCNRAACRSKL------GQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 527 ~---~p-------------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~ 566 (608)
. .. ..+.++..+|...... +..++++..|.++++++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 00 0134666777777777 888999999999999999999
Q ss_pred HHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC
Q 040048 567 KARLRRADCFAKIEK-----------------WEASMQDYEILKKEAPD 598 (608)
Q Consensus 567 ~a~~~la~~~~~~g~-----------------~~~A~~~~~~al~l~P~ 598 (608)
.+|+.+|..+...=+ ...|+..|-+++...++
T Consensus 293 k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999988766522 13589999999999988
No 245
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.012 Score=65.00 Aligned_cols=238 Identities=18% Similarity=0.136 Sum_probs=130.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 349 (608)
+|.+....+-|++|...|++- .. +..+. -......+..+.|.++.+++ +.+.+|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-~~---n~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DM---NVSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-cc---cHHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 456666677777777777652 11 11111 11223456666666666655 34678888888888888888
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh--HHH-----------------
Q 040048 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA--PQI----------------- 410 (608)
Q Consensus 350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~----------------- 410 (608)
+|++.|-++ -+|. .+........+.|.|++.+.++.-+-+...+.. ..+
T Consensus 1122 dAieSyika---dDps---------~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA---DDPS---------NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHhc---CCcH---------HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh
Confidence 888888776 3443 355566667777888888877766655432211 111
Q ss_pred -------HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 411 -------YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 411 -------~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
....|.-++..+.|+.|.-+|.. ..-|..++..+..+|+|..|+...+++-..
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~-- 1249 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------------------VSNFAKLASTLVYLGEYQGAVDAARKANST-- 1249 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHHHHHHhhhccch--
Confidence 11123333333444444333322 333455666666677777776666655321
Q ss_pred CChHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048 484 NNKEVNMVMRKA------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL 545 (608)
Q Consensus 484 ~~~~~~~~l~~~------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 545 (608)
..|.....+ -.++.+-.+...|...|-++|-+.+++.++-+..-+...+..||.+|.+-
T Consensus 1250 ---ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1250 ---KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred ---hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 122111000 00233345555666666666666666666666555555666666665543
Q ss_pred CCHHHHHHHH
Q 040048 546 GQFEKAIEDC 555 (608)
Q Consensus 546 g~~~~A~~~~ 555 (608)
+ +++-.+.+
T Consensus 1327 k-p~km~EHl 1335 (1666)
T KOG0985|consen 1327 K-PEKMMEHL 1335 (1666)
T ss_pred C-HHHHHHHH
Confidence 2 34333333
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=7.2e-05 Score=47.91 Aligned_cols=32 Identities=34% Similarity=0.727 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPN 296 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~ 296 (608)
++|+.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666654
No 247
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.01 Score=65.59 Aligned_cols=250 Identities=12% Similarity=0.038 Sum_probs=140.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..|+.|..+|.+.++.|...+|++.|-+| +++..|.....+..+.|.|++-+.++.-+-+... .+.+-..|-.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 45778888888888888888888888664 5667777777778888888888887776654321 12222334444
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|.+.++..+-.+.+ ..|+. .-.-..|.-....+.|+.|.-.|... .-|..++..+..+
T Consensus 1176 yAkt~rl~elE~fi------~gpN~-------A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI------AGPNV-------ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHhchHHHHHHHh------cCCCc-------hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 55555554443332 22221 11112233333334444443333221 2244455555555
Q ss_pred CChHHHHHHhhcCCCCCC--ccccc------c-------cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 422 HKHQEADETLKNGPNFDV--DETTR------F-------FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p--~~~~~------~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
|+|+.|...-+++-.... .-+.. + ....-+++-+-.+...|...|-|++-+.+++.++-+...+-
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 555555555554432110 00000 0 00011355666788888999999999999999988877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---C-----CCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---L-----DPYNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~-----~p~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
..+. .+|.+|.+ -++++-.++++-... + .-+....|..+-.+|.+-..|+.|.
T Consensus 1314 gmfT------------ELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1314 GMFT------------ELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHH------------HHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5554 66766654 345555554443222 1 1134567777777777777777654
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=9.9e-05 Score=47.19 Aligned_cols=34 Identities=32% Similarity=0.718 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK 297 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 297 (608)
|++|+.+|.+++..|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3556666666666666666666666666666653
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.002 Score=62.68 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=86.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcC
Q 040048 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-EPHY---HRAHHRLANLYLRLG 346 (608)
Q Consensus 271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 346 (608)
+......|++.+|....++.++..|.+..++..--.+++.+|+...-...+++++.. +++. ..++-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344455566666666666666666666555555555555566666666666665544 3333 334444555555666
Q ss_pred CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048 347 EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e 426 (608)
-|++|.+.-+++++ +++.+ . -.....+.++...+++.+
T Consensus 190 ~y~dAEk~A~ralq-iN~~D------~-----------------------------------Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 190 IYDDAEKQADRALQ-INRFD------C-----------------------------------WASHAKAHVLEMNGRHKE 227 (491)
T ss_pred cchhHHHHHHhhcc-CCCcc------h-----------------------------------HHHHHHHHHHHhcchhhh
Confidence 66666666666665 55555 2 233344556666666666
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA 479 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (608)
+.+...+.-..-... .-. -..-|...|.+++..+.|+.|++.|.+-+
T Consensus 228 g~eFM~~ted~Wr~s-~ml-----asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 228 GKEFMYKTEDDWRQS-WML-----ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHhcccchhhh-hHH-----HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 666655543322210 000 02334445666666677777777776543
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.093 Score=53.58 Aligned_cols=137 Identities=10% Similarity=-0.075 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-----YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
.+...|-.+.+++++.+|...|.++.+...+.+. .+.++..--+-+.+.+.-...+-..-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4556788999999999999999998876655533 23333333344667777666666666778888888889999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchh--------HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVD--------IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
..++.++|.+|++.+...-.++.... .........-...+......|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998865543211111 011111222234566778888888888887777653
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0024 Score=56.72 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN----------------------SVLLCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
...|......++.+.++..+++++.+.... ..++..++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 345666777889999999999999873221 2355677888899999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
..+|.+..+|..+-.+|..+|+..+|+..|+++.+
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864
No 252
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.60 E-value=5.5e-05 Score=73.60 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 582 (608)
..+.-.+..|.+++|++.|..++.++|..+.+|-..+.+++++++...|+..|..+++++|+...-|-..+.....+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 040048 583 EASMQDYEILKKEAP 597 (608)
Q Consensus 583 ~~A~~~~~~al~l~P 597 (608)
++|..++..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998764
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.59 E-value=0.0064 Score=61.75 Aligned_cols=179 Identities=11% Similarity=0.015 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI----DPNKASYRSNKTAALIA---LGRLLEAVFECREA-IRIEPHYHR 333 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~a-l~~~p~~~~ 333 (608)
.++++...+=..|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 45777888888899999999999998886665 44566778889999999 99999999999994 455677899
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHH-Hc-
Q 040048 334 AHHRLANLYLRL---------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAI-AG- 402 (608)
Q Consensus 334 ~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~- 402 (608)
.+..+|.+|..+ ...++|+..|.++.. ++++.......+..+...+..........+-...+...+ +.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE-IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc-CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 999999988653 357899999999998 887765444444443333332222112222111111111 11
Q ss_pred --CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048 403 --GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441 (608)
Q Consensus 403 --~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 441 (608)
.+...-..+..++.+..-.|++++|+..+++++...|..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 122223445567788888999999999999999987764
No 254
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.58 E-value=0.05 Score=59.99 Aligned_cols=253 Identities=15% Similarity=0.036 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN--K-------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY- 331 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~- 331 (608)
..|..-...+.......++.+|..+..++...-+. . +...-..|.+....|++++|++..+.++..-|..
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 45666777888899999999999999988765443 1 3445667888889999999999999999977765
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--HHHHHHHHHHHH----H
Q 040048 332 ----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--WNTLIQETRAAI----A 401 (608)
Q Consensus 332 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al----~ 401 (608)
..++..+|.+..-.|++++|..+...+.+ ...........+.+.+..+.+....|. +.+....+...- .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 45778889999999999999999888766 433333334445566667777777783 333333332222 1
Q ss_pred cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 402 GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481 (608)
Q Consensus 402 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (608)
..|-+.. .....+.++...-+++.+.......++........-. ....+++.++.+++..|++++|...+.+...+
T Consensus 572 q~~~~~f-~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~---~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 572 QKPRHEF-LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPL---LSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hcccchh-HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222211 2222333333333377776666666654322111000 11333458999999999999999999988775
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048 482 DSNN-KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525 (608)
Q Consensus 482 ~p~~-~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 525 (608)
.... +.+.. . +.++..........|+..+|.....+..
T Consensus 648 ~~~~~~~~~~-~-----a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 648 LLNGQYHVDY-L-----AAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hcCCCCCchH-H-----HHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 5443 11111 0 1111233345567889998888887744
No 255
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.55 E-value=5.3e-05 Score=73.68 Aligned_cols=97 Identities=24% Similarity=0.328 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 346 (608)
....+...+..|++++|++.|..+|.++|..+..|..++.+++.+++...|+..|..+++++|+....|-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 33456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCc
Q 040048 347 EVEKAIYHFKHAGPEADQ 364 (608)
Q Consensus 347 ~~~~A~~~~~~al~~~~p 364 (608)
++++|...+..+.+ ++-
T Consensus 197 ~~e~aa~dl~~a~k-ld~ 213 (377)
T KOG1308|consen 197 NWEEAAHDLALACK-LDY 213 (377)
T ss_pred chHHHHHHHHHHHh-ccc
Confidence 99999999999877 443
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.55 E-value=0.017 Score=58.63 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCC
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA---CGRFEDALAAIQKA-AKQDS 483 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p 483 (608)
+++...+-..|....+|+.-+.+.+..-.+.-.+ ......+...+|.++.+ .|+.++|+..+..+ ....+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~------~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD------VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc------hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 4555666677888889988888877765542111 11236777888999988 99999999999994 45566
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 484 NNKEVNMVMRKAKGVAAARSNGNALF---------KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554 (608)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~~lg~~~~---------~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 554 (608)
.+++.+.++ |.+|. .....++|+.+|.++.+.+|+ ...-.|++.++...|.-.+....
T Consensus 215 ~~~d~~gL~------------GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 215 PDPDTLGLL------------GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred CChHHHHHH------------HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHH
Confidence 677777643 44432 233478999999999999964 44445677777777764433322
Q ss_pred HHHHH-hc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 555 CNAAL-NV-----------RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 555 ~~~al-~~-----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
.++.. .+ .-.+...+-.++.+..-.|++++|++.+++++.+.|..-+
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 22222 11 1223455567788888899999999999999999886544
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.006 Score=65.19 Aligned_cols=167 Identities=17% Similarity=0.044 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhH-----HHHHHH-HHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNK-ASY-----RSNKTA-ALI----ALGRLLEAVFECREAIRIEPHYHRAHHR 337 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~-----~~~la~-~~~----~~g~~~eA~~~~~~al~~~p~~~~~~~~ 337 (608)
.+-...--.||-+.++..+.++.+...-. +.+ .+..+. .+. .....+.|.+.+.......|+..-.++.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33334445699999999999988732211 111 111111 111 2456788999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 040048 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA 417 (608)
Q Consensus 338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~ 417 (608)
.|.++...|+.++|++.|++++. .. ..........++.++..+..+.+|++|...+....+...-+.....+..|.+
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~-~q--~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIE-SQ--SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhcc-ch--hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999999999864 22 2233344566889999999999999999999999998777777778888999
Q ss_pred HHHcCCh-------HHHHHHhhcCCCCC
Q 040048 418 LLKLHKH-------QEADETLKNGPNFD 438 (608)
Q Consensus 418 ~~~~g~~-------~eA~~~l~~al~~~ 438 (608)
+...++. ++|..++.++....
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999 88888888776543
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.011 Score=53.63 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-SKARLRRADCFA 577 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~ 577 (608)
..++..+...+++++|+..++.++....+. ..+-..||.+...+|++++|+..+..... ++. +..-...|+++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 478899999999999999999999764433 35667899999999999999988876432 222 233567899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 040048 578 KIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
..|+-++|+..|+++++.+++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999985443
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.44 E-value=0.0032 Score=55.87 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNK----------------------ASYRSNKTAALIALGRLLEAVFECREA 324 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~eA~~~~~~a 324 (608)
+...|......|+.+.++..+++++.+.... ..+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444666778899999999999999875322 134566777888999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
+..+|.+..+|..+..+|...|+..+|+..|++...
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988643
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.11 Score=55.62 Aligned_cols=180 Identities=16% Similarity=0.110 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH----------HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR----------SNKTAALIALGRLLEAVFECREAIRIEP 329 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~eA~~~~~~al~~~p 329 (608)
..++|..|..+|+.....-.++.|...|-+.-... . .... ...+.+-.--|++++|.+.|-.+-+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr--- 762 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR--- 762 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch---
Confidence 35677788888877777777777766665542211 1 0111 2233333445677777776644321
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHH
Q 040048 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQ 409 (608)
Q Consensus 330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 409 (608)
.+ .-..++..+|+|-.-...++..-. +......-.++.+.+..+..+..|++|.++|...-
T Consensus 763 rD-----LAielr~klgDwfrV~qL~r~g~~-----d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------- 823 (1189)
T KOG2041|consen 763 RD-----LAIELRKKLGDWFRVYQLIRNGGS-----DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------- 823 (1189)
T ss_pred hh-----hhHHHHHhhhhHHHHHHHHHccCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 11 112345556666666655554322 11222334556666777777777777777765532
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQK 477 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (608)
-...+..++.....|++-..+.+...+ +...+-.+|..+...|.-++|++.|-+
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe--------------~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPE--------------DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCc--------------ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 123345666666666655554444432 144555567777777777777666643
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.36 E-value=0.098 Score=57.81 Aligned_cols=208 Identities=15% Similarity=0.045 Sum_probs=134.3
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGAD--------SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
..+........+.+|.....++...-+. .........|.+....|++++|++..+.++..-|......
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~---- 495 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS---- 495 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh----
Confidence 3344445556666666665555432221 1235566778899999999999999999988777643221
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHh---
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAK--FSEAAAAYGDG--- 524 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~--~~eA~~~~~~a--- 524 (608)
...++..+|.+..-.|++++|..+...+.+........+. .+.+....+.++..+|+ +.+....|...
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2678888999999999999999999999887443322221 12233466788888883 33333333322
Q ss_pred -hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 525 -LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR----PGY--S-KARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 525 -l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
+...|-+.......+.++...-+++.+.....+.+++. |.. . -+++.|+.+++..|++++|...+.....+-
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 22344444444444444444444777777777776653 222 2 233589999999999999999998887654
No 262
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.28 E-value=0.00048 Score=43.96 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777776664
No 263
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.28 E-value=0.049 Score=56.66 Aligned_cols=220 Identities=9% Similarity=0.028 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhH
Q 040048 316 EAVFECREAIRIEPHYHRAHHRLANLYLRLGE--------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381 (608)
Q Consensus 316 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 381 (608)
.-.-.|++++..-+..+++|+..+..+...++ .+++..+|++++..+...+ ...++.++.
T Consensus 263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~------~~Ly~~~a~ 336 (656)
T KOG1914|consen 263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN------KLLYFALAD 336 (656)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHh
Confidence 34456777887778888888877776666665 6778888888865222221 233333333
Q ss_pred HHHHhhc---HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048 382 DAKRTRD---WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR 458 (608)
Q Consensus 382 ~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 458 (608)
.-...-+ ++..-.++.+++........-+|..+.....+..-...|..+|.++-+..... ..++..-
T Consensus 337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----------hhVfVa~ 406 (656)
T KOG1914|consen 337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----------HHVFVAA 406 (656)
T ss_pred hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----------chhhHHH
Confidence 3222222 56666677777766444444556666666666777778888888776543221 2444444
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCC-CHHH
Q 040048 459 AQV-NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPY-NSVL 534 (608)
Q Consensus 459 a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~-~~~~ 534 (608)
|.+ |...++.+-|...|+-.++..++.+.... .....+...++-..|..+|++++.. .++ ...+
T Consensus 407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~------------~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I 474 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVL------------KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI 474 (656)
T ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHH------------HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence 433 45678888888888888888888887654 4456677788888888888888876 332 2466
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
|..+-..-..-|+...+++.-++-....|
T Consensus 475 w~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 475 WDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77776777777888777777666555544
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.011 Score=57.22 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 532 (608)
+.-+..+.-....|++.+|...|..++...|++.++.. .++.+|...|+.+.|...+...-.......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~------------~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKL------------LLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHH------------HHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 34445666778899999999999999999999988876 889999999999999998877533322221
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHh
Q 040048 533 -VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP--DDEEVDQAL 606 (608)
Q Consensus 533 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~L 606 (608)
..+.....++.+.....+ ...+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+- ++..+++.|
T Consensus 203 ~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 203 AHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred HHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 111112233333333332 2345666778999999999999999999999999999988887653 344455444
No 265
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.21 Score=47.47 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE-KA 351 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 351 (608)
+.+...-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++++.++++-+|.+..+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 445556678888888899999998888888877777654 5677788888888888988888888877777777766 55
Q ss_pred HHHHHHhCC
Q 040048 352 IYHFKHAGP 360 (608)
Q Consensus 352 ~~~~~~al~ 360 (608)
++..+.++.
T Consensus 133 Lef~~~~l~ 141 (318)
T KOG0530|consen 133 LEFTKLMLD 141 (318)
T ss_pred HHHHHHHHh
Confidence 666666554
No 266
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.13 E-value=0.14 Score=51.26 Aligned_cols=184 Identities=15% Similarity=0.004 Sum_probs=135.3
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc----CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL----HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ 460 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~ 460 (608)
...++..++..+..+-.... ......++.+|..- .+..+|..+|+.+... +++.+.+.+|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~------------g~~~a~~~lg~ 117 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD------------GLAEALFNLGL 117 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc------------ccHHHHHhHHH
Confidence 34567777777777665221 25666677777653 4688899999965543 24788888999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHhhcCC
Q 040048 461 VNLA----CGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQ-----A--KFSEAAAAYGDGLGLD 528 (608)
Q Consensus 461 ~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~-----g--~~~eA~~~~~~al~~~ 528 (608)
+|.. ..++.+|..+|+++........ ... ..+|.+|..- - +...|+..|.++....
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~------------~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM------------YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH------------HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 9987 5599999999999988755443 112 2556665553 1 2347999999988775
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q 040048 529 PYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE---------------KWEASMQDY 589 (608)
Q Consensus 529 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~ 589 (608)
++.+.+.+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~ 260 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL 260 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence 78899999988866 3489999999999999876 88889999 777666 888999999
Q ss_pred HHHHHhCCCCH
Q 040048 590 EILKKEAPDDE 600 (608)
Q Consensus 590 ~~al~l~P~~~ 600 (608)
.++....+...
T Consensus 261 ~~~~~~~~~~~ 271 (292)
T COG0790 261 QKACELGFDNA 271 (292)
T ss_pred HHHHHcCChhH
Confidence 99887765443
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.12 E-value=0.51 Score=50.16 Aligned_cols=316 Identities=10% Similarity=0.052 Sum_probs=209.6
Q ss_pred hhHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhh
Q 040048 251 PTSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAAL-IALGRLLEAVFECREAIRI 327 (608)
Q Consensus 251 a~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~ 327 (608)
+...+...+. |..-..|...|..-++.|..+.++..|++++.--|-....|..+-... -..|+.+.-...|++|+..
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~ 143 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSY 143 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 3444555543 666778899999999999999999999999999998888776654443 3467888888889999886
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH------hhcHHHHHHHHHH
Q 040048 328 EPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR------TRDWNTLIQETRA 398 (608)
Q Consensus 328 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~ 398 (608)
...+ ...|-.+-.....++++..-...|++.++ +.... +..++..-..... +...++++..-..
T Consensus 144 vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile-iP~~~------~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 144 VGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE-IPLHQ------LNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred cccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh-hhhhH------hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 5543 34555555556777888888888888876 32222 1111111111111 1111222111111
Q ss_pred HH-------------------Hc--CCCCh-HH-------HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048 399 AI-------------------AG--GADSA-PQ-------IYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 399 al-------------------~~--~~~~~-~~-------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
.. .. .|... .. .....=.++.......+.+..++..+..---..... ..
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl--~~ 294 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL--DQ 294 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc--cH
Confidence 11 00 01100 00 111112233344445556666666665311000000 00
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-D 528 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~ 528 (608)
.....|......-...|+++.....|++++--.....+.|. ..+......|+.+-|-..+.++.++ .
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi------------ky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI------------KYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH------------HHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 13566777777888999999999999999988888888886 6667777779999999888888876 4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
+..+.+...-+.+-...|+++.|...+++..+-.|+...+-........+.|+.+.+..
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 66677888888888889999999999999999889998888888888889999988873
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.027 Score=54.44 Aligned_cols=136 Identities=19% Similarity=0.163 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
..+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+. .+..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~----- 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHG----- 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHH-----
Confidence 445566777888899999999999999999999999999999999999999998888776542222111 1111
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
....++.+.++-. ..+. ..+++.+..+|++ ...-+.+|..+...|
T Consensus 206 -----l~a~i~ll~qaa~-~~~~----------------------------~~l~~~~aadPdd-~~aa~~lA~~~~~~g 250 (304)
T COG3118 206 -----LQAQIELLEQAAA-TPEI----------------------------QDLQRRLAADPDD-VEAALALADQLHLVG 250 (304)
T ss_pred -----HHHHHHHHHHHhc-CCCH----------------------------HHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Confidence 0111333333322 1110 1122333344544 356677788888888
Q ss_pred ChHHHHHHhhcCCCCCCc
Q 040048 423 KHQEADETLKNGPNFDVD 440 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~ 440 (608)
+.++|.+.+-..++.+..
T Consensus 251 ~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 251 RNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 888888877666665443
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.08 E-value=0.063 Score=58.86 Aligned_cols=244 Identities=18% Similarity=0.098 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcC--
Q 040048 279 NFAEALALYDAAISIDPNKASYRSNKTAALIAL-----GRLLEAVFECREAIRI-----EPHYHRAHHRLANLYLRLG-- 346 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 346 (608)
+..+|..+|+.+-+. .+..+.+.+|.||..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456788888887665 4678888999998865 6899999999998771 1114557778888887743
Q ss_pred ---CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC-
Q 040048 347 ---EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH- 422 (608)
Q Consensus 347 ---~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g- 422 (608)
+++.|+.+|.++.. ... +...+.+|.++..-.
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g~-------------------------------------------~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LGN-------------------------------------------PDAQYLLGVLYETGTK 340 (552)
T ss_pred ccccHHHHHHHHHHHHh-cCC-------------------------------------------chHHHHHHHHHHcCCc
Confidence 56667777777654 221 234556666666544
Q ss_pred --ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048 423 --KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK 496 (608)
Q Consensus 423 --~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 496 (608)
++..|..+|..+... ++..+.+.++.+|.. ..+...|..++.++.+.. ++.+..
T Consensus 341 ~~d~~~A~~yy~~Aa~~------------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~------ 400 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKA------------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAY------ 400 (552)
T ss_pred cccHHHHHHHHHHHHHc------------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHH------
Confidence 567888888888754 458888999988865 357899999999999887 222222
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHH
Q 040048 497 GVAAARSNGNALFKQ-AKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKL----GQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~ 567 (608)
.++..+... +.+..+...+....+..-.. ...+.......... .+.+.+...+.++.. ..+..
T Consensus 401 ------~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~ 472 (552)
T KOG1550|consen 401 ------LLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNAD 472 (552)
T ss_pred ------HHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHH
Confidence 222322221 67777666665554442211 11222222111111 245566666666654 45678
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 040048 568 ARLRRADCFAKI----EKWEASMQDYEILKKEA 596 (608)
Q Consensus 568 a~~~la~~~~~~----g~~~~A~~~~~~al~l~ 596 (608)
+...+|.+|+.- .+++.|...|.++....
T Consensus 473 a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 473 AILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 889999998775 46999999999988766
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.00 E-value=0.15 Score=50.56 Aligned_cols=122 Identities=20% Similarity=0.097 Sum_probs=66.3
Q ss_pred HHcCCHHHHHHHHHHHHhcC----CCC----hhHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------
Q 040048 275 YKAGNFAEALALYDAAISID----PNK----ASYRSNKTAALIALG-RLLEAVFECREAIRI----EP---HY------- 331 (608)
Q Consensus 275 ~~~g~~~~Al~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~eA~~~~~~al~~----~p---~~------- 331 (608)
..+|+++.|..+|.++-... |+. ...+++.|......+ ++++|+.+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777765543 222 234667777777777 777777777777765 11 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHH---HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048 332 HRAHHRLANLYLRLGEVEKAI---YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 403 (608)
..++..++.+|...+.++... ...+.+.. -.|+. ...++..-.+..+.++.+.+.+.+.+++...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~------~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNK------PEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCC------cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 235666777777766654333 23332222 22222 1222222222222566666666666666543
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.092 Score=56.12 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCch-hHHHH-HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV-DIAKA-KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP 408 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 408 (608)
++..|..+|..-...-.++-|...|-+.-. ...- ...+. ....--...+.+....|.+++|.+.|-.+-.
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr------- 762 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR------- 762 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch-------
Confidence 356677777666666666666666655432 1100 00000 0001112233444444666666665543211
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (608)
.-+...++.++|+|-....+++..-.-+.+. +...++..+|..+..+..+++|.++|...
T Consensus 763 --rDLAielr~klgDwfrV~qL~r~g~~d~dD~--------~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 763 --RDLAIELRKKLGDWFRVYQLIRNGGSDDDDE--------GKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred --hhhhHHHHHhhhhHHHHHHHHHccCCCcchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112344455566665555555543322221 12455666666666666666666666543
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0013 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.548 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDP 295 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p 295 (608)
++|+.+|.++...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.21 Score=45.40 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..+.+.+|..+...+++++|+..++.++....+. ....+ +-.+++.+....|++++|+..+....... -.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-~lk~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~ 158 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDE-NLKAL--------AALRLARVQLQQKKADAALKTLDTIKEES-WA 158 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH-HHHHH--------HHHHHHHHHHHhhhHHHHHHHHhcccccc-HH
Confidence 4556678889999999999999999988654332 22111 12389999999999999999887654321 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
+......|.++...|+-++|+..|+++++..++.
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3445678999999999999999999999987554
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.89 E-value=0.18 Score=51.35 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=48.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048 286 LYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 286 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 359 (608)
.|++++..-|-.++.|+.....+...++-+.|+...++++...|. ....++.+|....+-++-..+|++++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 456666666667777777777777777777777777777666655 56666777766666666556666554
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.85 E-value=0.0022 Score=40.41 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
+++.+|.++..+|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777753
No 276
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.80 E-value=0.66 Score=46.37 Aligned_cols=194 Identities=18% Similarity=0.047 Sum_probs=115.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---
Q 040048 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIAL----GRLLEAVFECREAIRIEPHYHRAHHRLANLYLR--- 344 (608)
Q Consensus 272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--- 344 (608)
......+++..|+..+..+-.. .+......++.+|... .+..+|+.+|+.+. ...++.+.+.||.+|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 3344667778888888777652 2335677777777653 45777888887443 44566777778877766
Q ss_pred -cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 345 -LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 345 -~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
..++.+|..+|+++.. .+..........++.+|..-.
T Consensus 125 v~~d~~~A~~~~~~Aa~-----------------------------------------~g~~~a~~~~~~l~~~~~~g~- 162 (292)
T COG0790 125 VPLDLVKALKYYEKAAK-----------------------------------------LGNVEAALAMYRLGLAYLSGL- 162 (292)
T ss_pred cccCHHHHHHHHHHHHH-----------------------------------------cCChhHHHHHHHHHHHHHcCh-
Confidence 3366666666666543 111100011222232222211
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
.+ . ...-+...|+..|.++-... +..... .
T Consensus 163 ~~---------~---------------------------~~~~~~~~A~~~~~~aa~~~--~~~a~~------------~ 192 (292)
T COG0790 163 QA---------L---------------------------AVAYDDKKALYLYRKAAELG--NPDAQL------------L 192 (292)
T ss_pred hh---------h---------------------------cccHHHHhHHHHHHHHHHhc--CHHHHH------------H
Confidence 00 0 00001256777777776655 333433 7
Q ss_pred HHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 040048 504 NGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG---------------QFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 504 lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 564 (608)
+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|...+.++....+.
T Consensus 193 lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 193 LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7777754 4588999999999998866 78888888 666666 666677777776665544
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.78 E-value=0.014 Score=47.93 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGR-----------LLEAVFECREAIRIEPHYHRAH 335 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~eA~~~~~~al~~~p~~~~~~ 335 (608)
++..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46788999999999999999999988876 456677888866542 4569999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 336 HRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 336 ~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
+.+|.-+-....|++++.-.++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999887777788999988888877
No 278
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.76 E-value=0.01 Score=57.08 Aligned_cols=74 Identities=24% Similarity=0.289 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
..+.-..+.|+.++|..+|+.|+.+.|+++.++..+|.+....++.-+|-.+|-+|+.+.|.+.+++.++++..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 45566678899999999999999999999999999999999999999999999999999999999998877653
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.74 E-value=0.075 Score=54.65 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=101.1
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC----------------------CCCchhHHHHHHHHHHHHHhHHH
Q 040048 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP----------------------EADQVDIAKAKSLQAHLNKCTDA 383 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~~p~~~~~~~~~~~~~~~~~~~ 383 (608)
..+|-+.+++..++.++..+|+...|.+.+++++- .++-..........+.+......
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444421 01111222334456677777888
Q ss_pred HHhhcHHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHH
Q 040048 384 KRTRDWNTLIQETRAAIAGGAD-SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVN 462 (608)
Q Consensus 384 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~ 462 (608)
.+.|-|..|++..+-.+.++|. +.-.+...+-...++.++++--+..++......... +.. ..+...+..+.++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~--~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLS--LLPNFAFSIALAY 188 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhh--hCccHHHHHHHHH
Confidence 8999999999999999999999 555566666667778888888888777654421110 000 0145666777778
Q ss_pred HHcCCH---------------HHHHHHHHHHHHhCCCC
Q 040048 463 LACGRF---------------EDALAAIQKAAKQDSNN 485 (608)
Q Consensus 463 ~~~g~~---------------~~A~~~~~~al~~~p~~ 485 (608)
+..++- ++|...+.+|+...|.-
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888877 89999999999988864
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.69 E-value=0.18 Score=51.93 Aligned_cols=138 Identities=16% Similarity=0.073 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHHHHHHHH
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQD--------------------------SNNKEVNMVMRKAKGVAAARSNG 505 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~~lg 505 (608)
...++.++.++..+|+++.|.+++++|+-.. +.|... ..+++...
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f---------flal~r~i 110 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF---------FLALFRYI 110 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH---------HHHHHHHH
Confidence 6677777777777777777777777765321 112222 23446777
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C----CHHHHHHHHHHHHH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPY-NSV-LLCNRAACRSKLGQFEKAIEDCNAALNVRP-G----YSKARLRRADCFAK 578 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~----~~~a~~~la~~~~~ 578 (608)
..+.+.|-+..|+++++-.+.++|. ++. +++.+-....+.++|+--++.++....... + .+..-+..+.+++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 8889999999999999999999998 664 444555556678888877887777655211 1 23566788888888
Q ss_pred cCCH---------------HHHHHHHHHHHHhCCC
Q 040048 579 IEKW---------------EASMQDYEILKKEAPD 598 (608)
Q Consensus 579 ~g~~---------------~~A~~~~~~al~l~P~ 598 (608)
.++- ++|.+.+.+|+...|.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888 8999999999998875
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1.2 Score=54.68 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC----------C-
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR-PG----------Y- 565 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~- 565 (608)
.+.|...|++....|+++.|..+.-.|.+.. -+.++...|..+...|+-..|+..+++.++.+ |+ .
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 4556699999999999999999999998876 57899999999999999999999999999753 22 1
Q ss_pred -----HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH
Q 040048 566 -----SKARLRRADCFAKIEKW--EASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 566 -----~~a~~~la~~~~~~g~~--~~A~~~~~~al~l~P~~~~ 601 (608)
..+.+.++......|++ ++-+++|..+.++.|...+
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 22344555555566664 3556889999999985543
No 282
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.66 E-value=0.079 Score=43.81 Aligned_cols=93 Identities=15% Similarity=0.336 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC---C-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCC
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLD---P-Y--------NSVLLCNRAACRSKLGQFEKAIEDCNAALN-------VRP 563 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~---p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p 563 (608)
.-|.-.+..|-|++|...++++++.. | . ++..+-.|+..+..+|+|++++..-+++|. ++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 33455667799999999999998752 2 1 245677899999999999998887777764 455
Q ss_pred CCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 564 GYSKA----RLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 564 ~~~~a----~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+.... -+..|..+..+|+.++|+..|+++-++
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 55444 468899999999999999999998764
No 283
>PRK10941 hypothetical protein; Provisional
Probab=96.62 E-value=0.013 Score=57.19 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
.++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666554433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.57 E-value=0.0044 Score=40.12 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
|.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.57 E-value=0.0041 Score=39.13 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN 296 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~ 296 (608)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 286
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.013 Score=60.49 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL---GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
.-|.--+..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+..+..|+.++|....+|+.|++++..+
T Consensus 379 ~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 379 TEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 3444444556778899999999999999999999999998874 5777899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Q 040048 580 EKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
+++.+|+++...+....|.+...
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999998889966554
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=1.1 Score=44.41 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=125.0
Q ss_pred HHcCCHHHHHHHHHHhCCC---CCchhHHHHHHHHHHHHHhHHHHHhh-cHHHHHHHHHHHHHc----CC------C---
Q 040048 343 LRLGEVEKAIYHFKHAGPE---ADQVDIAKAKSLQAHLNKCTDAKRTR-DWNTLIQETRAAIAG----GA------D--- 405 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~---~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~~------~--- 405 (608)
...|+++.|..++.++-.. .+|+. .......+++.|......+ +++.|+..++++.+. .. +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~--~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDM--AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHH--HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 3456666666666655331 12222 2344556666666666777 788888887777665 11 1
Q ss_pred ChHHHHHHHHHHHHHcCChH---HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 406 SAPQIYALQAEALLKLHKHQ---EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD 482 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~---eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 482 (608)
-...++..++.+|...+.++ +|...++.+-...|+. +.++...-.+....++.+++.+.+.+++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~----------~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK----------PEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC----------cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 11346777888898887765 4555555554444442 5555555555555889999999999998765
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHH---HHHHHcC--C------H
Q 040048 483 S-NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRA---ACRSKLG--Q------F 548 (608)
Q Consensus 483 p-~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la---~~~~~~g--~------~ 548 (608)
+ ........+ ..... ........|..++...+.. .|.... |.... .++...+ + .
T Consensus 152 ~~~e~~~~~~l----------~~i~~-l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i 219 (278)
T PF08631_consen 152 DHSESNFDSIL----------HHIKQ-LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKI 219 (278)
T ss_pred ccccchHHHHH----------HHHHH-HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHH
Confidence 4 222222111 11111 1223345677777666643 222221 22222 1222222 1 2
Q ss_pred HHHHHHHHHHHhc--CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 549 EKAIEDCNAALNV--RPGYS-------KARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 549 ~~A~~~~~~al~~--~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
+.....+...... .|-.. ...++.|...++.++|++|.++|+-++
T Consensus 220 ~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 220 ESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222333322211 12222 345677999999999999999999876
No 288
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.37 E-value=1.5 Score=45.10 Aligned_cols=68 Identities=6% Similarity=-0.120 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
+|.+.-.|+.+-..+-.+|.+++-.+.|++...-.|--+.+|...-.--....+|......|-+++..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 47888899999999999999999999999998888877777765555445556777777777777653
No 289
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.35 E-value=0.16 Score=51.54 Aligned_cols=145 Identities=8% Similarity=-0.045 Sum_probs=104.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 259 STRMDPETLKIMGNEDYKAGN------------FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~------------~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
..|.|.++|..+....-..-. .+.-+.+|++||+.+|++...+..+-.+.....+.++....+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347889999888765443322 46778899999999999999998888888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhCCCCCc-----------hhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048 327 IEPHYHRAHHRLANLYLR---LGEVEKAIYHFKHAGPEADQ-----------VDIAKAKSLQAHLNKCTDAKRTRDWNTL 392 (608)
Q Consensus 327 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A 392 (608)
.+|++...|..+-..... .-.+......|.+++..+.. ........+..++.++......|..+.|
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 999998888765554433 23466666666666541110 0112344566666777777777888888
Q ss_pred HHHHHHHHHcC
Q 040048 393 IQETRAAIAGG 403 (608)
Q Consensus 393 ~~~~~~al~~~ 403 (608)
+..++..++.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 88887777764
No 290
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.76 Score=45.39 Aligned_cols=283 Identities=11% Similarity=0.010 Sum_probs=161.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCC--CH
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISI--DPNK--------ASYRSNKTAALIALGRLLEAVFECREAIR---IEPH--YH 332 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~p~--~~ 332 (608)
...+.......++++++..|...+.. .|.+ ......+|..|...|+..+-.......-. .-+. ..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44556666777788999999888874 1211 24577889999999988765554443322 1111 11
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----C-CCC
Q 040048 333 RAHHRLANLYLR-LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----G-ADS 406 (608)
Q Consensus 333 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~-~~~ 406 (608)
.....+-..+.. -+..+.-+..+...++ -.............-..+...|...++|.+|+......+.. + ...
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIe-WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIE-WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 112222222211 1222333333333332 11111111111223345667788889999998877665532 2 222
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-- 484 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 484 (608)
..+++..-...|..+.+..+|...+..+-...-. .+..|.-.+.+-..-|.++..-.+|.-|..+|-++++-...
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~Ana---iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANA---IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD 243 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc---cccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC
Confidence 3456666778888899998888877665432111 01111112444555667777778999999999999874322
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 040048 485 -NKEVNMVMRKAKGVAAARSNGNALFKQAKFSE--AAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAAL 559 (608)
Q Consensus 485 -~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e--A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 559 (608)
+..+...+ -|..+..+ ..+..++ ++-.-..+++....+..+....|..+.. +.+|+.|+..|..=+
T Consensus 244 ~~v~A~~sL-------KYMlLcKI--Mln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 244 DDVKALTSL-------KYMLLCKI--MLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKEL 314 (411)
T ss_pred CcHHHHHHH-------HHHHHHHH--HhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHH
Confidence 23333322 12233444 4444444 4444556777777778888888888765 567889999888877
Q ss_pred hcCC
Q 040048 560 NVRP 563 (608)
Q Consensus 560 ~~~p 563 (608)
..+|
T Consensus 315 ~~D~ 318 (411)
T KOG1463|consen 315 AEDP 318 (411)
T ss_pred hcCh
Confidence 7664
No 291
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.34 E-value=0.34 Score=51.54 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
.+..++...++|.+|..+.++.-+.- +.+|+-.|.-+....+|++|.+.|.+|
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 44567778899999988877654443 346666777777777888887777665
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.34 E-value=0.01 Score=61.89 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=89.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048 463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR 542 (608)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 542 (608)
...|+...|+.++..++...|....+-. .+++.++.+.|-..+|-.++.+++.+....+..++.+|..+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~-----------v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPL-----------VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY 686 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccH-----------HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence 4578999999999999998887766543 38999999999999999999999999988899999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
..+.+.+.|++.|+.|++++|+++..-..|-.+
T Consensus 687 l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999987665444333
No 293
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=1.8 Score=45.64 Aligned_cols=151 Identities=11% Similarity=-0.090 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHcCCH--HHHHHHHHHHHhhCCCCHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAA-------LIALGRL--LEAVFECREAIRIEPHYHR 333 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-------~~~~g~~--~eA~~~~~~al~~~p~~~~ 333 (608)
.|.....+=.+.-..|+-++++..+-++-...+..+..-..+..+ +...+.. +...+.+.......|+.+.
T Consensus 189 lpp~i~~~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~ 268 (546)
T KOG3783|consen 189 LPPKILRLLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGAL 268 (546)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCcc
Confidence 344444444445556777777777766554443333222222222 2223322 4444555555667899998
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (608)
.....+.++...|+.+.|+..+...+. ...+......++.++.......+|.+|...+....+...-+....-+.
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yf 343 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYF 343 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHH
Confidence 999999999999998888888887654 223334455677888888899999999988888777654443333333
Q ss_pred HHHHH
Q 040048 414 QAEAL 418 (608)
Q Consensus 414 la~~~ 418 (608)
.|.++
T Consensus 344 a~cc~ 348 (546)
T KOG3783|consen 344 AGCCL 348 (546)
T ss_pred HHHHH
Confidence 34444
No 294
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.32 E-value=0.013 Score=41.40 Aligned_cols=36 Identities=36% Similarity=0.524 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 534 LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 534 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
.++.+|..++++|+|++|..+.+.++++.|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344555555555555555555555555555554443
No 295
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.30 E-value=0.013 Score=56.36 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
..|.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.|.++.-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 44445578899999999999999999999999999999999999999999999999999999998753
No 296
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.18 Score=47.86 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=91.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 040048 461 VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA 540 (608)
Q Consensus 461 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 540 (608)
++....+-..|+.+...++.++|.+..+|.. ..-.+-....+..+-++++.+.++.+|.+-.+|..+-.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~y-----------Rr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQY-----------RRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 3344555677888888888888888887762 22222223344666777778888888888888887777
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 541 CRSKLGQFE-KAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 541 ~~~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
+....|+.. .-++..+.++..+..+..+|-.+-.+....+.++.-+.+-.+.++.+--|-.+|
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 777777776 677777788887777777777777777777777777777666666665554444
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.26 E-value=1.7 Score=44.74 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHh----
Q 040048 452 ANLLVVRAQVNLACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAA--AYGDG---- 524 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~--~~~~a---- 524 (608)
+..+..-|.-+...|. -++|+..++.+++..+.+....... ..+-...|.+|+. .+.+.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--------------~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--------------FLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4445556666777777 8899999999999998887654322 1111122222221 11111
Q ss_pred --h---cCCC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 525 --L---GLDP---YNSVLLCNRA--ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI 591 (608)
Q Consensus 525 --l---~~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 591 (608)
+ .+.| .+.+.-+.|+ ..++..|+|.++.-+..=..++.| .+.++..+|.|++...+|++|..++..
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 1 1222 2344444454 456778999999988888888899 789999999999999999999888765
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.22 E-value=0.46 Score=45.33 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--CHHH
Q 040048 457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY--NSVL 534 (608)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~ 534 (608)
.+|.+|+..++|.+-...+.+.-.........-..-..-+.++.|..--..|..+.+-..-..+|++++.+... ++.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 47888888888877766666654433221111000011122333445556777778877788889998876432 2222
Q ss_pred H----HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C--HHHHHHHHHHHHHcC
Q 040048 535 L----CNRAACRSKLGQFEKAIEDCNAALNVRPG-----Y--SKARLRRADCFAKIE 580 (608)
Q Consensus 535 ~----~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~--~~a~~~la~~~~~~g 580 (608)
. -.=|..+.+.|+|++|-..|=.|.+.... - ..-|..||..+.+.|
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 2 22345677888999999888888765321 1 123445555555543
No 299
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=1 Score=47.38 Aligned_cols=246 Identities=13% Similarity=-0.026 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRLANLYLRLGEVEKAIYHFK 356 (608)
Q Consensus 281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 356 (608)
+...+.+.......|..+......+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555677899998899999999999998888998888877 322 2356788889999999999999988
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHhHHHHH--------hhcHHHHHHHHH---HHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048 357 HAGPEADQVDIAKAKSLQAHLNKCTDAKR--------TRDWNTLIQETR---AAIAGGADSAPQIYALQAEALLKLHKHQ 425 (608)
Q Consensus 357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~---~al~~~~~~~~~~~~~la~~~~~~g~~~ 425 (608)
.... . ..|.....-+-.|.+++. .++-+.+-...+ ..+...|.+.|. ...-..
T Consensus 328 ~L~d---e---sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~R 391 (546)
T KOG3783|consen 328 LLRD---E---SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVR 391 (546)
T ss_pred HHHh---h---hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHH
Confidence 8754 1 122222222222222211 112222221111 111111111110 001112
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH---h-CCCChHHHHHHHHHHHHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC--GRFEDALAAIQKAAK---Q-DSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~---~-~p~~~~~~~~l~~~~~~~ 499 (608)
++..+-.+.. ..+... .+..++.++.++... ....+.. -++..++ . ++++ +...
T Consensus 392 Kverf~~~~~-~~~~~~--------la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd-~~lk--------- 451 (546)
T KOG3783|consen 392 KVERFVKRGP-LNASIL--------LASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDD-EGLK--------- 451 (546)
T ss_pred HHHHHhcccc-cccccc--------ccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchH-HHHH---------
Confidence 2322222221 111110 011223333333221 1122222 1122221 2 2222 2222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGL---DPY----NSVLLCNRAACRSKLGQ-FEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 565 (608)
+..+|.++..+|+...|..+|...++. ... .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 452 -~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 -YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 247899999999999999999988843 111 36789999999999999 999999999998876553
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.0083 Score=38.80 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAI 291 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al 291 (608)
|..+|.++...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.13 E-value=0.1 Score=46.22 Aligned_cols=85 Identities=22% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
..+..+..+-...++.+++...+...--+.|..+..-..-|.+++..|+|.+|+..++.+..-.|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45677777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHH
Q 040048 345 LGEVE 349 (608)
Q Consensus 345 ~g~~~ 349 (608)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 98864
No 302
>PRK10941 hypothetical protein; Provisional
Probab=96.13 E-value=0.048 Score=53.36 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
..+.++-.+|...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999998763
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=4.2 Score=50.32 Aligned_cols=292 Identities=10% Similarity=0.039 Sum_probs=157.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
.+|.+-++.+.|..|+-++++- ...+.. ...+..+=.+|...++++.-.-....- ..+| .+...-..+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHHHHh
Confidence 5788888999999999999884 211111 123444444777777777655555431 1122 23333445556
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
.|++..|..+|++++. .+|+.. ..+...-......+.+...+...+-.....++.....+..-..+-...++|
T Consensus 1462 ~g~~~da~~Cye~~~q-~~p~~~------~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQ-KDPDKE------KHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hccHHHHHHHHHHhhc-CCCccc------cchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 6777778888888777 666641 112222222333345555555444444444444444444444445666666
Q ss_pred HHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-----------------------------HHHHHHHH
Q 040048 425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-----------------------------FEDALAAI 475 (608)
Q Consensus 425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------------------~~~A~~~~ 475 (608)
+.-..++. ..+-+. ..+. .+|.++....+ |..+.+..
T Consensus 1535 D~~e~~l~---~~n~e~----------w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEY----------WSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred hhhhhhhh---cccccc----------hhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 66555543 111100 0110 02333222211 11111111
Q ss_pred HHHHH-------------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC----CCCHHHH
Q 040048 476 QKAAK-------------QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---LD----PYNSVLL 535 (608)
Q Consensus 476 ~~al~-------------~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~----p~~~~~~ 535 (608)
-++.. ..+++..... -.-|.+....-....+..+-+-.+++++- .+ ...++.|
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s~~~-------sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDSANN-------SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccc-------chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 11100 0000000000 00011111111111223344444444432 22 3447899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
...|.+....|+++.|..++-+|.+.. -+.++...|..+...|+-..|+..+++.++++
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999999999998877 57899999999999999999999999999765
No 304
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.57 Score=45.07 Aligned_cols=283 Identities=10% Similarity=0.076 Sum_probs=152.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCCHHHHHHHHHHH---Hhh--CCCCHHH
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISIDP--------NKASYRSNKTAALIALGRLLEAVFECREA---IRI--EPHYHRA 334 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~a---l~~--~p~~~~~ 334 (608)
..+|+-....+++++|+..|.+.+...- ........++.+|...|++..--+..... ..- .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5578888899999999999999987621 12346788999999999876543333222 221 1222222
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc----C-CCChH
Q 040048 335 HHRLANLY-LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG----G-ADSAP 408 (608)
Q Consensus 335 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~-~~~~~ 408 (608)
...|-.-+ .....++.-+..+...++ ..............-..+...+.+.|.|.+|+......+.. + .-...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~ie-wA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIE-WADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 22221111 112334444444444433 11111111222334445667788889999998877665532 1 12223
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS---NN 485 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~ 485 (608)
.++..-..+|....+..++...+..+-..... .+..+.-.+.+-..-|.++..-.+|.-|..+|-++++-.. .+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans---~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d 242 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANS---AYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD 242 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc---cCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccch
Confidence 56677778888888887777666544322110 0110111244445556667778899999999999987432 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHhhc-CCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 040048 486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAY--GDGLG-LDPYNSVLLCNRAACRS--KLGQFEKAIEDCNAALN 560 (608)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~--~~al~-~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~ 560 (608)
..+...++ |..+..+.. +..++-...+ ...++ .+.....+....+..+. .+.+|..|+..|..-+.
T Consensus 243 ~kAc~sLk-------YmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~ 313 (421)
T COG5159 243 VKACVSLK-------YMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELH 313 (421)
T ss_pred HHHHHHHH-------HHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence 33333221 223333332 2233322222 22233 23344556666666553 24577888888877665
Q ss_pred cCC
Q 040048 561 VRP 563 (608)
Q Consensus 561 ~~p 563 (608)
.+|
T Consensus 314 ~D~ 316 (421)
T COG5159 314 QDS 316 (421)
T ss_pred cCH
Confidence 543
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.06 E-value=0.28 Score=40.64 Aligned_cols=109 Identities=18% Similarity=0.186 Sum_probs=71.3
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----
Q 040048 453 NLLVVRA--QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG---- 526 (608)
Q Consensus 453 ~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---- 526 (608)
.+|..|+ .-.+.-|-|++|...+.++++....-+.--..-...-.+..+..|+.++..+|+|++++...++++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3444443 4456678999999999999986544331100000011233445788899999999998877766664
Q ss_pred ---CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 527 ---LDPYNSVL----LCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 527 ---~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
++.+.... .+..|..+..+|+.++|+..|+.+-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 55555444 457899999999999999999998764
No 306
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.02 E-value=0.059 Score=43.16 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY--HRAHHRLANLYLRLGEVEKAIYHFKH 357 (608)
Q Consensus 283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 357 (608)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4566778888888888888888888888888888888888888887765 45556666666666664444444433
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.97 E-value=0.031 Score=39.57 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR 301 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 301 (608)
.++.+|..+++.|+|++|..+.+.+|+.+|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455555555666666666666666666666555443
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.96 E-value=0.14 Score=45.32 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
+..+..+-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..|+.+.+..|..+.+.-.++.|+..+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34667777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHH
Q 040048 581 KWE 583 (608)
Q Consensus 581 ~~~ 583 (608)
+.+
T Consensus 93 D~~ 95 (160)
T PF09613_consen 93 DPS 95 (160)
T ss_pred ChH
Confidence 854
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.96 E-value=0.22 Score=47.37 Aligned_cols=203 Identities=11% Similarity=0.103 Sum_probs=117.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHc
Q 040048 276 KAGNFAEALALYDAAISIDPNKAS----YRSNKTAALIALGRLLEAVFECREAIRIE-----PHYHR-AHHRLANLYLRL 345 (608)
Q Consensus 276 ~~g~~~~Al~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-~~~~la~~~~~~ 345 (608)
...+.++|+.-|++++++.+...+ ++-.+..+++.+|+|++-...|.+.+..- .++.+ ....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345889999999999999987653 56677888999999999999998877531 12211 111111111111
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-----C------ChHHHHHHH
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-----D------SAPQIYALQ 414 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~------~~~~~~~~l 414 (608)
.+.+--.+.|+..+. .-.+......+...-..+|.++...++|....+.+.+.-.... + ...++|..-
T Consensus 119 ~~m~LLQ~FYeTTL~-ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLD-ALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHH-HHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 122222222222211 0000000111123344678888888888877777666543211 1 123566777
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
..+|...++-.+-...|++++.+...-+.... -..+.-.-|..+++.|+|++|-..|-+|++...
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI----mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLI----MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHH----HhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 78888888888888888888765432110000 011222335567889999999999988887543
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.95 E-value=0.2 Score=50.92 Aligned_cols=153 Identities=9% Similarity=-0.024 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 285 ALYDAAISIDPNKASYRSNKTAALIALGR------------LLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 285 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 352 (608)
.-|++.+..+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988876554422 467788999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHH----hHHHHHhhcHHHHHHHHHHHHHcC---C-------CChHHHHHHHHHHH
Q 040048 353 YHFKHAGPEADQVDIAKAKSLQAHLNK----CTDAKRTRDWNTLIQETRAAIAGG---A-------DSAPQIYALQAEAL 418 (608)
Q Consensus 353 ~~~~~al~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~---~-------~~~~~~~~~la~~~ 418 (608)
+.+++++. ..|.+..-+...-.+... ..+-.-...|.+++..+....... . .....++..+...+
T Consensus 86 ~~we~~l~-~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLF-KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHH-HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 99999998 777764333222111111 112222333444444443333322 0 11134566677888
Q ss_pred HHcCChHHHHHHhhcCCCCC
Q 040048 419 LKLHKHQEADETLKNGPNFD 438 (608)
Q Consensus 419 ~~~g~~~eA~~~l~~al~~~ 438 (608)
...|-.+.|+..++-.++++
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 89999999999999888764
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.94 E-value=0.012 Score=36.07 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665554
No 312
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.91 E-value=0.011 Score=54.56 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
.+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344444445555555555555544555555555555555555555555555554443
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.86 E-value=0.29 Score=44.88 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH----HH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YH----RA 334 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~----~~ 334 (608)
..++..+|..|.+.|++++|+++|.++.+..... .+.++.+..+.+..+++..+..++.++-.+-.. +. ..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4578899999999999999999999988865443 456788888999999999999999988765322 22 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
...-|..++..++|.+|...|-.+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 44567778889999999999988765
No 314
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.85 E-value=0.075 Score=54.88 Aligned_cols=91 Identities=13% Similarity=0.004 Sum_probs=77.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 040048 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK-WEASMQDYEILKK 594 (608)
Q Consensus 516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~ 594 (608)
.-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678888888888899998888888888889999999999999999999999988888777776 8899999999999
Q ss_pred hCCCCHHHHHHh
Q 040048 595 EAPDDEEVDQAL 606 (608)
Q Consensus 595 l~P~~~~~~~~L 606 (608)
.+|+++.+|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999888654
No 315
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.83 E-value=0.032 Score=57.72 Aligned_cols=107 Identities=26% Similarity=0.323 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA---LGRLLEAVFECREAIRIEPHYHRAHHR 337 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~ 337 (608)
+...+.++.-|+-.+..+....|+..|.+++...|.....+.+++.++++ .|+.-.|+..+..+++++|....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 45566777778878888889999999999999999999999999998877 467778999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCCCCchhHH
Q 040048 338 LANLYLRLGEVEKAIYHFKHAGPEADQVDIA 368 (608)
Q Consensus 338 la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 368 (608)
|+.++..++++.+|+.+...+.. ..|.+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~-~~Ptd~a 480 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQM-SFPTDVA 480 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhh-cCchhhh
Confidence 99999999999999998776665 7776643
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.82 E-value=0.082 Score=43.46 Aligned_cols=92 Identities=11% Similarity=0.119 Sum_probs=73.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQ-----------FEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~ 569 (608)
++..++..|++-+|+++.+..+...+++. ..+..-|.++.++.. +-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45778899999999999999999877665 566677888866543 3468999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+.+|.-+....-|+++..--++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888776666777777777777664
No 317
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.24 Score=52.34 Aligned_cols=132 Identities=19% Similarity=0.011 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048 465 CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK 544 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 544 (608)
.+...-++..+...+.+++.++...... .+...+...+....+...+..++..+|++..++.+||.....
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~----------~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~ 113 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAA----------FLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL 113 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHH----------HHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH
Confidence 3344446777777777888888875421 256777788888899999999999999999999999999888
Q ss_pred cCCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 545 LGQFEKAIEDCNA-ALNVRPGYSKARLRR------ADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 545 ~g~~~~A~~~~~~-al~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.|....+...+.. +....|++......+ +.....+|+..++....+++.++.|.++++...+
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 114 DGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred hhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 8877666665555 888888887665554 8888899999999999999999999998887665
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.63 E-value=0.019 Score=35.11 Aligned_cols=31 Identities=42% Similarity=0.754 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN 296 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~ 296 (608)
+++.+|.++...|++++|+.+|+++++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
No 319
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.32 Score=51.72 Aligned_cols=95 Identities=20% Similarity=0.186 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
.+-|.-.++..+|..++++|...+...|.+ +.....++.||..+.+.|.|.+++++|-+.+|..+-..+..-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 467788899999999999999999876654 45777899999999999999999999999999999888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 040048 576 FAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l~ 596 (608)
....|+-++|+.+..+.....
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhh
Confidence 999999999999988877653
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.46 E-value=0.12 Score=41.28 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY--SKARLRRADCFAKIEKWEASMQDYEI 591 (608)
Q Consensus 517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~ 591 (608)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567788888999999999999999999999999999999999988775 55666666666666664444444433
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=1.5 Score=39.12 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=85.6
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
+.-+...+..++|+..|...-+-.-... ..-+.+..|.+....|+...|+..|.++-.-.+-. .+..-+.+
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~Y--------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~AR 135 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSY--------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLAR 135 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHH
Confidence 3334456667777777666544322211 14556677777778888888888887765543322 22211111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGL-GLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
..-+.++...|-|++-....+..- ..+|-...+...||..-++.|++.+|...|..... +...+....+++
T Consensus 136 -------lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 136 -------LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred -------HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 145566777777776655554432 22344455666777777888888888888877766 444455555555
Q ss_pred HHHH
Q 040048 574 DCFA 577 (608)
Q Consensus 574 ~~~~ 577 (608)
.+..
T Consensus 208 q~ml 211 (221)
T COG4649 208 QIML 211 (221)
T ss_pred HHHH
Confidence 5544
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.31 E-value=6.3 Score=44.05 Aligned_cols=128 Identities=14% Similarity=-0.016 Sum_probs=75.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN 537 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 537 (608)
++.......+.+.|...+.+......-..+....+ ...+|......+...+|...+..+.... .+...+..
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~ 317 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQEL--------RDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLER 317 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHH
Confidence 34444456677888888876544444333322111 1234444444333567777777655432 23344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
...+....++++.+...+...-....+.....|.+|+.+..+|+.++|..+|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444555778887777777664333334567778888888888888888888888744
No 323
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=1.4 Score=46.58 Aligned_cols=101 Identities=16% Similarity=0.060 Sum_probs=68.4
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHcCChHHHHHHhhcC-----CCCCCccccccc
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP-QIYALQAEALLKLHKHQEADETLKNG-----PNFDVDETTRFF 446 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~la~~~~~~g~~~eA~~~l~~a-----l~~~p~~~~~~~ 446 (608)
..+++.....+.+.|.|..|.+..+-++.++|...| .+.+.+-...++..+|+--++.++.. +...|+
T Consensus 342 yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN------ 415 (665)
T KOG2422|consen 342 YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN------ 415 (665)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC------
Confidence 344444555667789999999999999999998444 34444444455666676666655544 233343
Q ss_pred CCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 040048 447 GPIGNANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSN 484 (608)
Q Consensus 447 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 484 (608)
...-..+|..|..... -+.|...+.+|+...|.
T Consensus 416 -----~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 416 -----FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred -----chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3444557777777666 67899999999998885
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.09 E-value=1.2 Score=38.77 Aligned_cols=85 Identities=21% Similarity=0.124 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
...+......-...++++++...+...--+.|+..+... .-|.++...|+|.+|+.+|+...+-.+..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~------------~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDM------------FDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccch------------hHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 445555666666788999999999888888999888776 67889999999999999999988887777
Q ss_pred HHHHHHHHHHHHHcCCH
Q 040048 532 SVLLCNRAACRSKLGQF 548 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~ 548 (608)
+..--.++.|+..+|+.
T Consensus 78 p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 78 PYGKALLALCLNAKGDA 94 (153)
T ss_pred hHHHHHHHHHHHhcCCh
Confidence 87777888888888874
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=2.2 Score=38.13 Aligned_cols=127 Identities=14% Similarity=0.044 Sum_probs=95.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SV 533 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~ 533 (608)
-+.-+...+..++|+..|...-+..-.....+.. ...|.+....|+...|+..|.++-...+-- ..
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~----------mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLAR----------MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHH----------HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 3444556788999999998877766665555443 378899999999999999999987764421 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 534 LLCNRAACRSKLGQFEKAIEDCNAALN-VRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 534 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+...-+.++...|-|++-....+..-. -+|--..+.-.||..-++.|++.+|...|.++..
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 445567778889999887666554322 2344567778999999999999999999999887
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.01 E-value=0.16 Score=47.98 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHhhcC----CC---CCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcCCC------CHHHHH
Q 040048 511 QAKFSEAAAAYGDGLGL----DP---YNSVLLCNRAACRSKLGQFE-------KAIEDCNAALNVRPG------YSKARL 570 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~a~~ 570 (608)
...+++|++.|.-|+-. .. .-+.++..+|++|..+|+.+ .|++.|+++++.... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44567777776666532 11 22567888999999999844 566666666654321 256788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 571 RRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 571 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
.+|.++.+.|++++|..+|.+++...-.+.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999998654433
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.99 E-value=0.37 Score=44.18 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH----HHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--YS----KARL 570 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~ 570 (608)
++..+|..|.+.|++++|++.|.++.+..... ...++.+..+....+++.....++.++-.+-.. +. ....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45689999999999999999999988875433 467888899999999999999999998776322 22 2334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 571 RRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 571 ~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
.-|..+...++|.+|.+.|-.+..-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 55777888999999999887765433
No 328
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.93 E-value=0.038 Score=51.25 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332 (608)
Q Consensus 272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 332 (608)
......++.+.|.+.|.+++.+.|++...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778889999999999999999999999999999999999999999999999998773
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.77 E-value=1.5 Score=46.35 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=70.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 273 EDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKA 351 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 351 (608)
.....+++++++.+.... ++.|.- ......++..+...|..+.|+.... +++..+.| ..+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCHHHH
Confidence 344678888877776421 122222 3345566667777777777765432 23444433 4567787877
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHh
Q 040048 352 IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETL 431 (608)
Q Consensus 352 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l 431 (608)
.+..++.-. +..|..+|...+..|+++-|..+|
T Consensus 338 ~~~a~~~~~-----------------------------------------------~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 338 LEIAKELDD-----------------------------------------------PEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHCCCCST-----------------------------------------------HHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHhcCc-----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 765543211 456777788888888888888888
Q ss_pred hcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 432 KNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA 479 (608)
Q Consensus 432 ~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 479 (608)
.++-. +..+..+|...|+.+.-.++...+.
T Consensus 371 ~k~~d------------------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 371 QKAKD------------------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHCT-------------------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HhhcC------------------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 87754 2235566777777655555554443
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.75 E-value=0.43 Score=41.53 Aligned_cols=84 Identities=23% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.+..........++.+++...+...--+.|+.+.....-|.+++..|+|.+|+..++...+-.+..+.+--.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34455555666899999999999988899999999999999999999999999999999988888888888899999999
Q ss_pred CCHH
Q 040048 346 GEVE 349 (608)
Q Consensus 346 g~~~ 349 (608)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8864
No 331
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.46 E-value=5.2 Score=46.31 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=61.3
Q ss_pred chhHHHHhhhC--C---CCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH
Q 040048 250 EPTSLCRALST--R---MDPETLKIMGNEDYKA-------GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA 317 (608)
Q Consensus 250 ~a~~~~~~~~~--~---~~~~~~~~lg~~~~~~-------g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 317 (608)
.|...++.+.. | .--++.+..|...+.+ ..+++|+.-|++ +.-.|.-+--|...|.+|.++|+++|-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (932)
T PRK13184 493 QALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEE 571 (932)
T ss_pred HHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHH
Confidence 44455555533 2 2356777777766643 257888888877 444566677788999999999999999
Q ss_pred HHHHHHHHhhCCCCHHH
Q 040048 318 VFECREAIRIEPHYHRA 334 (608)
Q Consensus 318 ~~~~~~al~~~p~~~~~ 334 (608)
+++|.-+++..|+.+..
T Consensus 572 ~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 572 IKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHhcCCCCcc
Confidence 99999999999888653
No 332
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.39 E-value=5.8 Score=39.22 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDV 439 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p 439 (608)
+...++.+..++|+..+|++.++...+..|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 445567777777777777777777666544
No 333
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.38 E-value=0.66 Score=43.89 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHhhcCCC------
Q 040048 466 GRFEDALAAIQKAAKQD---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS-------EAAAAYGDGLGLDP------ 529 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~-------eA~~~~~~al~~~p------ 529 (608)
..+++|++.|.-|+-.. ..... ..+..+..+|++|...|+.+ .|+..|+++++...
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s--------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPS--------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 45778888877776421 11111 11223458888888888854 45566666665432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
+...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 22578889999999999999999999999986433
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.18 E-value=0.32 Score=49.98 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=102.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 040048 463 LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACR 542 (608)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 542 (608)
...|+.-.|-.-+..++...|..+.... ..+.+...+|+|+.|.+.+..+-..-.....+...+-...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~------------l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQ------------LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhH------------HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 4578899999999999999999988765 6788999999999999988766555444445566666778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
.++|++++|....+-.+.-.-.+++...--|.....+|-+++|..++++.+.++|...
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8999999999999888887767777776667777788899999999999999988644
No 335
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=4 Score=40.54 Aligned_cols=280 Identities=13% Similarity=0.083 Sum_probs=162.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048 302 SNKTAALIALGRLLEAVFECREAIRI--EPHY--------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371 (608)
Q Consensus 302 ~~la~~~~~~g~~~eA~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 371 (608)
...+.......+.++++..|...+.. .|.. ......++.+|...|+.++-.......-. .- .......
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp-f~-~~v~Kak 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP-FL-SSVSKAK 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HH-HHhhhHH
Confidence 44555666677789999999988873 1221 34678899999999998877666554321 00 0011111
Q ss_pred HHHHHHHHhHHHHHh-hcHHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048 372 SLQAHLNKCTDAKRT-RDWNTLIQETRAAIAGGADSA-----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRF 445 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 445 (608)
.......+....... +....-+..+...++...... ..+-..+..+|...++|.+|+......+..-..-.+
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDD-- 163 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDD-- 163 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 111111111111111 112222333333332211100 123456788999999999998876555432111000
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN-----NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAA 520 (608)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 520 (608)
...-.+++..-...|....+..+|...+..|-..... ...+..- ..-|..+....+|.-|..+
T Consensus 164 --K~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD----------LqSGIlha~ekDykTafSY 231 (411)
T KOG1463|consen 164 --KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD----------LQSGILHAAEKDYKTAFSY 231 (411)
T ss_pred --ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH----------HhccceeecccccchHHHH
Confidence 0112566777788888899999988888766543211 1111110 1446777778999999999
Q ss_pred HHHhhcCCC---CCHH---HHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 040048 521 YGDGLGLDP---YNSV---LLCNRAACRSKLGQFEKAIE--DCNAALNVRPGYSKARLRRADCFAK--IEKWEASMQDYE 590 (608)
Q Consensus 521 ~~~al~~~p---~~~~---~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~la~~~~~--~g~~~~A~~~~~ 590 (608)
|-+|++-.. ++.. .+-.+-.|-..++..++--. .-+.+++....+.++....|.++.+ +.+|+.|+..|.
T Consensus 232 FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 232 FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 999987522 2222 33344445555666666443 3455666666778888888888754 568899999998
Q ss_pred HHHHhCC
Q 040048 591 ILKKEAP 597 (608)
Q Consensus 591 ~al~l~P 597 (608)
.-+..+|
T Consensus 312 ~eL~~D~ 318 (411)
T KOG1463|consen 312 KELAEDP 318 (411)
T ss_pred HHHhcCh
Confidence 8887766
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.14 E-value=0.73 Score=39.31 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 532 SVLLCNRAACRSKLGQ---FEKAIEDCNAALN-VRPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
....+++|+++....+ ..+.+.+++..++ -.|.. -+..+.||..+.+.++|++|+.+....++..|+|.++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444555555554332 3445555555554 22322 33445555566666666666666666666666665543
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.41 Score=51.03 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
.+.+-|.-+++..+|..++++|...+..-|.+ +.....++.||..+.+.+.|++++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34566778899999999999999999877665 445788999999999999999999999999999998888888
Q ss_pred HHHHHcCCHHHHHHHHHHhCC
Q 040048 340 NLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~ 360 (608)
.+...-|.-++|+.+......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHh
Confidence 888999999999998877654
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.82 E-value=0.69 Score=39.46 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHhhc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAK---FSEAAAAYGDGLG-LDPY-NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 502 ~~lg~~~~~~g~---~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+++++++....+ ..+.+.+++..++ -.|. .-+..+.||..++++|+|++++.+.+..++..|++..+.-..-.+.
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 477888876554 5678999999996 4443 3578889999999999999999999999999999988765544444
Q ss_pred H
Q 040048 577 A 577 (608)
Q Consensus 577 ~ 577 (608)
.
T Consensus 116 d 116 (149)
T KOG3364|consen 116 D 116 (149)
T ss_pred H
Confidence 3
No 339
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.75 E-value=8.5 Score=41.54 Aligned_cols=45 Identities=9% Similarity=0.211 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
.++|++|....++.-+.- +++|+-.|+.+....++++|-+.|.+|
T Consensus 786 ~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 344555544443322222 356777777777777888887777665
No 340
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=4.3 Score=43.16 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----------------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAK-----Q----------------DSNNKEVNMVMRKAKGVAAARSNGNALF 509 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~----------------~p~~~~~~~~l~~~~~~~~~~~lg~~~~ 509 (608)
+...++.++.+...+|+.+-|....+++|- . .|.+...+. +++..-..+.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL---------~l~r~m~~l~ 353 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYL---------ALFRYMQSLA 353 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHH---------HHHHHHHHHH
Confidence 588999999999999999998888888764 1 122222222 2344456677
Q ss_pred HcCCHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHHcCC-
Q 040048 510 KQAKFSEAAAAYGDGLGLDPY-NSVLLCNRAACRS-KLGQFEKAIEDCNAA-----LNVRPGYSKARLRRADCFAKIEK- 581 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a-----l~~~p~~~~a~~~la~~~~~~g~- 581 (608)
+.|-|..|.++++-.+.++|. ++.+...+..+|. +..+|.=-++.++.. +..-|+.. .-..+|..|.....
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEE 432 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCCh
Confidence 889999999999999999998 7766555555543 455565555555544 33445543 22456666666655
Q ss_pred --HHHHHHHHHHHHHhCCC
Q 040048 582 --WEASMQDYEILKKEAPD 598 (608)
Q Consensus 582 --~~~A~~~~~~al~l~P~ 598 (608)
.+.|...+.+|+.+.|.
T Consensus 433 ~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhHHHHHHHHHHHHHhCcH
Confidence 67899999999999883
No 341
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.55 E-value=0.51 Score=47.85 Aligned_cols=89 Identities=21% Similarity=0.479 Sum_probs=67.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLD--------PY-----N-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
|..++++++|..|..-|..++++. |. + ..+-..+..||+++++.+-|+....+.|-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 444555555555555555555431 11 1 12345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
.-+++.|.|+..+.+|.+|..-+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665543
No 342
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.50 E-value=0.16 Score=33.52 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666554
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.46 E-value=0.16 Score=33.54 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISI 293 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 293 (608)
.++..+|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555666666666666666666665543
No 344
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=8.9 Score=39.14 Aligned_cols=203 Identities=13% Similarity=-0.010 Sum_probs=128.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C--CC-CH
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISID-PN--------KASYRSNKTAALIALGRLLEAVFECREAIRI---E--PH-YH 332 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~-p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~--p~-~~ 332 (608)
+.....++.+.++.+|..+-+..+..- -. .+..|+.+..+|...|+...-...+...+.. . .. ..
T Consensus 130 lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qa 209 (493)
T KOG2581|consen 130 LLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQA 209 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHH
Confidence 334445556799999998887766431 11 2456888888999999977766666655542 1 11 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP---- 408 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 408 (608)
.....|-..|...+.|+.|-+...+. ..|+...........+.+|.+..-..+|..|.+++..++...|....
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~---~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKS---VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcc---cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 45566778888999999999988887 44555445567788888999999999999999999999999886432
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 409 -QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ--VNLACGRFEDALAAIQKAAKQDSNN 485 (608)
Q Consensus 409 -~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~p~~ 485 (608)
.+...+..+-.-+|++.+-.-.-+..++. ....|+.+.. -.....+|.+-++-|..-+..+...
T Consensus 287 q~v~k~~ivv~ll~geiPers~F~Qp~~~k-------------sL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 287 QQVNKLMIVVELLLGEIPERSVFRQPGMRK-------------SLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred HHHHHHHHHHHHHcCCCcchhhhcCccHHH-------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 12222333334456554432222221111 1333444333 3344555667777776666665544
Q ss_pred h
Q 040048 486 K 486 (608)
Q Consensus 486 ~ 486 (608)
.
T Consensus 354 ~ 354 (493)
T KOG2581|consen 354 T 354 (493)
T ss_pred h
Confidence 3
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.30 E-value=12 Score=39.05 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+.+|......+.+....|+|+.|...+.-+-..-..-..+...+-..+..+|++++|....+-.+.-.-+++++...-+.
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 57788888888888888999988887766554433333344444455556677777776666666544445554444444
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCc
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQ 364 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p 364 (608)
.-..+|-++++...+++.+. ++|
T Consensus 400 sa~~l~~~d~~~~~wk~~~~-~~~ 422 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLL-LNP 422 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhc-cCC
Confidence 45556666777777766665 444
No 346
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=3.2 Score=44.25 Aligned_cols=133 Identities=17% Similarity=0.034 Sum_probs=94.4
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVV--RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
-.-++..+...+.+++.+ ..++.. +...+...+....+...+..++..+|++.....
T Consensus 47 ~~~~~~a~~~~~~~~~~~----------~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------- 105 (620)
T COG3914 47 QALAIYALLLGIAINDVN----------PELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQ----------- 105 (620)
T ss_pred hhHHHHHHHccCccCCCC----------HHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHH-----------
Confidence 333566666666666653 333222 466677788888899999999999999988876
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH-hhcCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGD-GLGLDPYNSVLLCNR------AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
++|......|....++..+.. +....|.+......+ +.....+|+..++....+++..+.|.++.+...+..
T Consensus 106 -~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 106 -NLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 666666666666666555544 777888877665555 888888889999999999999998888766555444
Q ss_pred HHHH
Q 040048 575 CFAK 578 (608)
Q Consensus 575 ~~~~ 578 (608)
...+
T Consensus 185 ~r~~ 188 (620)
T COG3914 185 ARQE 188 (620)
T ss_pred HHHH
Confidence 4333
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=3 Score=46.22 Aligned_cols=119 Identities=12% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhH
Q 040048 303 NKTAALIALGRLLEAVFECREAIRIEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381 (608)
Q Consensus 303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 381 (608)
..-.++.+...|+-|+...+.- .++++. ...+...|.-++..|++++|...|.+.+..++|...-.
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------------ 405 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------------ 405 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------------
Confidence 3345566777788887766543 333433 45788889999999999999999999998778776311
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435 (608)
Q Consensus 382 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al 435 (608)
.+.......+...+++...+.+-... .-...+-.+|.++++.++-.+..++.-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 11222333444445555555444332 334556678888888877766666554
No 348
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.94 E-value=0.58 Score=47.44 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--------C----------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPN--------K----------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~--------~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 331 (608)
-|..++++++|..|..-|..+|++..+ . ..+--.+..||..+++.+-|+....+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 355677888888888888888876422 1 1234578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~a 358 (608)
..-+...|.|+..+.+|.+|...+.-+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766543
No 349
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.60 E-value=0.2 Score=48.63 Aligned_cols=85 Identities=11% Similarity=-0.090 Sum_probs=63.0
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 521 YGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR-RADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 521 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
|.++-...+.++..|...+....+.|-|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344445567777777777777777777778888888888888888887765 4455677788888888888888888888
Q ss_pred HHHHHH
Q 040048 600 EEVDQA 605 (608)
Q Consensus 600 ~~~~~~ 605 (608)
+.+|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 877754
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.29 E-value=17 Score=38.34 Aligned_cols=216 Identities=11% Similarity=-0.056 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.+..+-..+...-.+.-..-.+.+.+... .+-.+++.++.||... ..++-...+++.++.+=++...-..|+..|..
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 33333333434444444444555555544 3345666777777666 44555666677777666666666666666655
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ 425 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~ 425 (608)
++...+..+|.+++...-|.. +...-.+..++..+.-+++....+..+-.+-..+|.-
T Consensus 145 ik~sk~a~~f~Ka~yrfI~~~---------------------q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~- 202 (711)
T COG1747 145 IKKSKAAEFFGKALYRFIPRR---------------------QNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEG- 202 (711)
T ss_pred hchhhHHHHHHHHHHHhcchh---------------------hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccc-
Confidence 666667777766643111110 0011112233333333333333333332222222210
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH--------HHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLL-VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR--------KAK 496 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--------~~~ 496 (608)
...++ ..+-.-|....++.+|+..+...++.+..+..+...+- ...
T Consensus 203 -------------------------~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~ 257 (711)
T COG1747 203 -------------------------RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS 257 (711)
T ss_pred -------------------------hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch
Confidence 12222 22234455677888888888888888777765543221 112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
.++.|....++-..-.++.+++.-|++.+..+..+
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 24444455555556678889999999988776654
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.21 E-value=7.9 Score=41.08 Aligned_cols=135 Identities=20% Similarity=0.109 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
.+....++..+..+|..+.|+.+- .++...+.| ..+.|+++.|.+..++ .+++..|..||...+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHH
Confidence 344566777777888888877643 234454444 4578999999876543 346789999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
..|+++-|.++|.++-. +-.+..+|...|+-+...+....+...+. +...-.+++.+|+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd 417 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGD 417 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-
T ss_pred HcCCHHHHHHHHHhhcC---------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCC
Confidence 99999999999999744 23344455555665555555444443321 2223345566677
Q ss_pred hHHHHHHhhcCC
Q 040048 424 HQEADETLKNGP 435 (608)
Q Consensus 424 ~~eA~~~l~~al 435 (608)
.++.++.+.+.-
T Consensus 418 ~~~cv~lL~~~~ 429 (443)
T PF04053_consen 418 VEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 777766665543
No 352
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=0.68 Score=44.72 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.+...++..|+.+.+-...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 44455666677777777777777777777777777777777777777777777777777777665544433
No 353
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.19 Score=49.79 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDP-------------------YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
..|...++.++|+.|..-|.+++..-. .-...+.+++.+-.+.+.+..|+.....++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 445666777777777777776654211 1123556788999999999999999999999889
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 564 GYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 564 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+...+++.++..+....++++|++.++.+....|++..+...+.
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999887663
No 354
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.90 E-value=0.51 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 040048 265 ETLKIMGNEDYKAGNFAEALAL--YDAAISIDPN 296 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~--~~~al~~~p~ 296 (608)
+.|+.+|..++.+|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 3355555544
No 355
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.89 E-value=0.55 Score=45.76 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSN-KTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
+.|+..|...+......|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+++.++|+.+..|...-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 5789999999988889999999999999999999999999977 556677889999999999999999999998876543
No 356
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.53 E-value=27 Score=39.08 Aligned_cols=72 Identities=10% Similarity=-0.092 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRS-KLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
.|...-......|....-...+++++...+.+...|...+...- .++-.+.+...+-+++...|-....|-.
T Consensus 314 ~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~r 386 (881)
T KOG0128|consen 314 EWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKR 386 (881)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHH
Confidence 34444555566677777777777777777766777666654432 2444455666666677766665555433
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.51 E-value=0.69 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 040048 567 KARLRRADCFAKIEKWEASMQD--YEILKKEAPDD 599 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~--~~~al~l~P~~ 599 (608)
+.++.+|-.+..+|++++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3455666666666666666666 33555555543
No 358
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.39 E-value=1.1 Score=52.02 Aligned_cols=173 Identities=18% Similarity=0.130 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALA------LYDAA-ISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI------- 327 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------- 327 (608)
.++.-....|......|.+.+|.+ ++... -.+.|.....+..++.++..+|++++|+....++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345567778888888899988888 55532 3457888889999999999999999999999887654
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC----CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 328 -EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE----ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 328 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
.|+....+..++...+..++...|+..+.++... ..+ ..+.......++..++...++++.|+...+.++..
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge---~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE---DHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC---CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2445678888998888888888888888776541 112 12223444556666677888999999999988874
Q ss_pred C-----CC--ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048 403 G-----AD--SAPQIYALQAEALLKLHKHQEADETLKNGPNF 437 (608)
Q Consensus 403 ~-----~~--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 437 (608)
. |. .....+..+++.+..++++..|....+....+
T Consensus 1087 ~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1087 NKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2 22 12345677788888888888877776665543
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.14 E-value=23 Score=37.47 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=45.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhcCCC
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--------------------LGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~ 564 (608)
-.-|....+|.+|++.+...++.+..+.++.-++...+.. -.++-+++..|++.+..+..
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 3556677899999999999999988888777766665554 45677888888888776543
No 360
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.09 E-value=2.6 Score=48.63 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhcCCC
Q 040048 457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-------AKFSEAAAAYGDGLGLDP 529 (608)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-------g~~~eA~~~~~~al~~~p 529 (608)
...+++...+.|+.|+..|+++-.-.|+..+.+. +.+..|..+..+ ..+++|+..|++.-. .|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 549 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYE---------AQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GV 549 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchH---------HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CC
Confidence 3456778888999999999999999998776654 224556555432 257788888877644 35
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHH
Q 040048 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-----EKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~~~~al~l~P~~~~ 601 (608)
.-+.-|...|.+|..+|+|++-+++|.-|++..|.++..-...-.+-.++ .....|....--++.+.|....
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 550 GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 66777889999999999999999999999999998875443332222222 2345666777777777776543
No 361
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.08 E-value=0.98 Score=36.46 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 274 DYKAGNFAEALALYDAAISIDPNK---------ASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
....|+|.+|++.+.+.++..... ..+..++|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456677777777776666543221 234555666666666666666666666654
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.92 E-value=12 Score=36.76 Aligned_cols=94 Identities=19% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHcCCHH-HHHHHHHHHHhh------CCCCH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISI-----DPNKASYRSNKTAALIALGRLL-EAVFECREAIRI------EPHYH 332 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-eA~~~~~~al~~------~p~~~ 332 (608)
+.++.=+..+++.|++.-|.++..-.++. .+.+.....+++.++...+.-+ +-..+.+++++- .-.++
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 45666677888888888887766555543 3344455567777777665432 233334444432 22458
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~a 358 (608)
..|..+|..|++.|++.+|..+|-..
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 89999999999999999999998543
No 363
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=1.5 Score=42.37 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|-+.-|++.++..++..|+++.+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3455666778889999999999999999999999999999999999999999999999999999998875
No 364
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.86 E-value=1.2 Score=51.72 Aligned_cols=173 Identities=16% Similarity=0.079 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS-----NN 485 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~ 485 (608)
....+......+.+.+|.+ +.+++....+-.... .......+..++.++...+++++|+..-.++.-+.. +.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~--h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVL--HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhc--chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3345666666777777777 444333221100000 012378889999999999999999998887754322 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--------DPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
+.. ...+.+++...+..++...|+..+.++..+ .|.-+....+++.++...++++.|+.+.+.
T Consensus 1012 ~~t---------~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1012 PNT---------KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred HHH---------HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 221 223457888888888999999998888764 455566778899999999999999999999
Q ss_pred HHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 558 ALNVRPG--------YSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 558 al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
|+..... ....+..+++++..++++..|....+....+
T Consensus 1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9986422 3456677788888888888887777766654
No 365
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.82 E-value=1.2 Score=35.96 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=33.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 543 SKLGQFEKAIEDCNAALNVRPG---------YSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
.+.|+|.+|++.+.+.++.... ...+..++|.++...|++++|+..+++++++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4556666666666555553211 13455667777777777777777777777654
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=6.6 Score=38.11 Aligned_cols=209 Identities=12% Similarity=0.047 Sum_probs=124.6
Q ss_pred HHHhHHHHHhhcHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC
Q 040048 377 LNKCTDAKRTRDWNTLIQETRAAIAGGAD-------SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 377 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
+.++.-..+.+++++|+..|.+.+..+.. ........++.+|...|++..--+.....-+...+.. ..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft-----k~ 81 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT-----KP 81 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc-----ch
Confidence 34455566778999999999999987432 2235677789999999988655443332211100000 00
Q ss_pred CcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-
Q 040048 450 GNANLLVVRAQVN-LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL- 527 (608)
Q Consensus 450 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~- 527 (608)
....+...+-.-+ .....++.-+..+...++.......... ....-..+..++++.|+|.+|+......+..
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL------r~~Le~Kli~l~y~~~~YsdalalIn~ll~El 155 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL------RLELECKLIYLLYKTGKYSDALALINPLLHEL 155 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0011111111111 1233455555555555543222211111 1112236788999999999999988776542
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 528 -----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKA--RLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 528 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a--~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.+.-..++..-..+|....+..++...+..|-.. .|....+ -..-|.......+|.-|..+|-.+++-
T Consensus 156 Kk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 156 KKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 3445677888888999999998888888776554 2332222 234466667778899999999888874
Q ss_pred C
Q 040048 596 A 596 (608)
Q Consensus 596 ~ 596 (608)
.
T Consensus 236 f 236 (421)
T COG5159 236 F 236 (421)
T ss_pred c
Confidence 3
No 367
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=22 Score=36.38 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
..+.+.+-+.|+..+.|+.|.....+..--...... .-+..++.+|.+..-+++|..|.+++-.|+...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn------e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN------EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH------HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 455666778888889999999988877632221111 1277888999999999999999999999999999844
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.56 E-value=33 Score=38.40 Aligned_cols=183 Identities=11% Similarity=-0.006 Sum_probs=105.5
Q ss_pred HhhcHHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHH
Q 040048 385 RTRDWNTLIQETRAAIAGGADS---APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV 461 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~ 461 (608)
...+.+.|...+.+......-. ...++..+|.-....+...+|...+..+.....+ ...+-....+
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~-----------~~~~e~r~r~ 321 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQS-----------TSLLERRVRM 321 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCC-----------cHHHHHHHHH
Confidence 3445566666666543332211 1223334443333333366777777765543222 2333344445
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------------
Q 040048 462 NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD------------- 528 (608)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------------- 528 (608)
....++++.+..++...-......... .+-+|..+...|+.++|..+|+++....
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw------------~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~ 389 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEW------------RYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGE 389 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhh------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCC
Confidence 557777777666666542222222222 2467788777888888888887764310
Q ss_pred ------C---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 529 ------P---YN-----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 529 ------p---~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
+ .. .......+..+...|+...|...+..++.. .+......++.+....|.++.|+....++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 390 EYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 00 012245567778888999998888887774 34566777888888888888887665543
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.44 E-value=26 Score=36.97 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=74.1
Q ss_pred hHHHHhhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 040048 252 TSLCRALST--RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRIE 328 (608)
Q Consensus 252 ~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~ 328 (608)
..+++.... +.|+..|........+.+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|...+.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 344555544 46889999998888888889999999999999999999999999988888776 899999999999999
Q ss_pred CCCHHHHHHH
Q 040048 329 PHYHRAHHRL 338 (608)
Q Consensus 329 p~~~~~~~~l 338 (608)
|+.+..|...
T Consensus 171 pdsp~Lw~ey 180 (568)
T KOG2396|consen 171 PDSPKLWKEY 180 (568)
T ss_pred CCChHHHHHH
Confidence 9998876543
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.26 E-value=6.7 Score=36.31 Aligned_cols=76 Identities=17% Similarity=0.051 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG----YSKARLRRADCFAKIEKWEAS 585 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 585 (608)
.-.-++|...|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.++|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334467887777665432 266899999998887 56789999999999998644 489999999999999999998
Q ss_pred HH
Q 040048 586 MQ 587 (608)
Q Consensus 586 ~~ 587 (608)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 53
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.19 E-value=0.54 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777664
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.94 E-value=2.5 Score=32.47 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH---HHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYR---SNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
....|.-++...+.++|+..++++++..++...-+ -.+..+|...|+|.+++.+..+=++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777766654433 3344556667777776666554443
No 373
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.83 E-value=1.9 Score=42.27 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
+.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5566778888888888888888888888888888888888888888888888888888877664
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.78 E-value=2.3 Score=41.71 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048 280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 359 (608)
|..=+...+++++. ....++..++..+...|+++.++..+++.+..+|.+..+|..+-..|...|+...|+..|+++-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444442 2356788889999999999999999999999999999999999999999999999999998763
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.77 E-value=21 Score=34.92 Aligned_cols=139 Identities=15% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 404 ~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
+.-.+.++..+|..+.+.+++.+|..+|-..-. ++ ..++..+-... ..+-.|
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~--~~-----------~~~~~~ll~~~---------------~~~~~~ 137 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD--PS-----------AFAYVMLLEEW---------------STKGYP 137 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H--HH-----------HHHHHHHHHHH---------------HHHTSS
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC--hh-----------HHHHHHHHHHH---------------HHhcCC
Confidence 334477888888888888888877776644421 00 11111111111 122233
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----CC-----------CCHHHHH-HHHHHHHHcCC
Q 040048 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----DP-----------YNSVLLC-NRAACRSKLGQ 547 (608)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p-----------~~~~~~~-~la~~~~~~g~ 547 (608)
...+.+. ......|...++...|...+..-++. +| ..+.+.+ .+-..-.+.++
T Consensus 138 ~e~dlfi-----------~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 138 SEADLFI-----------ARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp --HHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred cchhHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Confidence 3333332 13335567778888888766555543 22 2232211 11111223333
Q ss_pred ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 548 ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 548 ---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
|..-.+.|+..|+.+|........+|..|+....
T Consensus 207 ~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 207 LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 2333344444555667778888899999987543
No 376
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.64 E-value=0.55 Score=30.61 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISI 293 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~ 293 (608)
+++..+|.+.+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566666666666666666666666654
No 377
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=15 Score=37.70 Aligned_cols=169 Identities=13% Similarity=-0.002 Sum_probs=106.6
Q ss_pred HhhcH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHH-----------HcCChHHHHHHhhcCCCCCCcccccccCCCCcH
Q 040048 385 RTRDW-NTLIQETRAAIAGGADSAPQIYALQAEALL-----------KLHKHQEADETLKNGPNFDVDETTRFFGPIGNA 452 (608)
Q Consensus 385 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~la~~~~-----------~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~ 452 (608)
..+.+ ..+++.-.+.++.+|+.....-+....+.. ...-+++-+.+...+++.+|+. .
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks----------Y 109 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS----------Y 109 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh----------H
Confidence 33444 345556666666777654322222222221 2224566677778888888885 6
Q ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 453 NLLVVRAQVNLACGR--FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 453 ~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+|..+..++.+.+. +..-+.+++++++.+|.+..+|..-+. ..+.+-.......+=+++..++|..++.
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf--------V~~~~~~~~~~~~~El~ftt~~I~~nfS 181 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF--------VVEQAERSRNLEKEELEFTTKLINDNFS 181 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH--------HHHHHhcccccchhHHHHHHHHHhccch
Confidence 778888888877654 578888888999999888887753211 2222222333466777888888888888
Q ss_pred CHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 531 NSVLLCNRAACRSK------LGQ------FEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 531 ~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
+..+|.+...++.. .|+ ...-++.-..|+-.+|++..+|+.
T Consensus 182 NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 182 NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 88888887777652 231 234455666677778888777754
No 378
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.11 E-value=0.51 Score=27.76 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 040048 568 ARLRRADCFAKIEKWEASMQDYE 590 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~ 590 (608)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.49 E-value=0.58 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALY 287 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~ 287 (608)
+.+.+|..+...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555554444
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.35 E-value=8.4 Score=35.99 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc--
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRADCFAKI-- 579 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~-- 579 (608)
...+.+.+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-.+.|++ ...|..+-.|....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999888888899999999999999999999999886 33444444433221
Q ss_pred ------------CCHHHHHHHHHHHHHhCCC-CHHHHHHhh
Q 040048 580 ------------EKWEASMQDYEILKKEAPD-DEEVDQALQ 607 (608)
Q Consensus 580 ------------g~~~~A~~~~~~al~l~P~-~~~~~~~L~ 607 (608)
|...+=+..+..++.+..+ ..++...|+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alr 128 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALR 128 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHH
Confidence 2555566666777776655 444444443
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.90 E-value=4.7 Score=31.01 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
+.-....|.-++...+.++|+..++++++..++.++.+..+ -.+..+|...|+|.+.+++..+-+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~l---------G~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVL---------GYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667789999999999999999999988766543 46778899999999998887665543
No 382
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.78 E-value=57 Score=38.26 Aligned_cols=49 Identities=27% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
.++..+...+++-+|-++....+.. |..+.. .|.+...|++|+.....+
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd-~~~av~------ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD-PEEAVA------LLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC-HHHHHH------HHhhHhHHHHHHHHHHhc
Confidence 5556666777777777766665543 222222 233344566666555444
No 383
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.67 E-value=55 Score=38.40 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
-.++...|..+...+.+++|.-.|+.+-++. ..-.+|...|+|.+|+....+.-.-....
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------------------kAl~a~~~~~dWr~~l~~a~ql~~~~de~ 998 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERCGKLE--------------------KALKAYKECGDWREALSLAAQLSEGKDEL 998 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhccHH--------------------HHHHHHHHhccHHHHHHHHHhhcCCHHHH
Confidence 4555566666677777777776666553321 11245566677777766655432211111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEI 591 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 591 (608)
...-..|+.-+...+++-+|-+.....+. +|.... .+|.+-..|++|+..-..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~~av------~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLS-DPEEAV------ALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhc-CHHHHH------HHHhhHhHHHHHHHHHHh
Confidence 12225677778888888888888777664 222222 233444456666654433
No 384
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.33 E-value=63 Score=36.37 Aligned_cols=142 Identities=8% Similarity=-0.095 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA---LGRLLEAVFECREAIRIEPHYHRAHHR 337 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~~~ 337 (608)
..+-..+..|-..+...|++++-...-.++-++.|..+..|.....-... .+.-.++...|++++. +-+.+..|..
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e 188 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEE 188 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHH
Confidence 45566677778888999999988888888888888888887766544433 4677888999999986 3344455554
Q ss_pred HHHHH-------HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048 338 LANLY-------LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403 (608)
Q Consensus 338 la~~~-------~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 403 (608)
.+... ...++++.....|.+++..+.............+......+...-..++.+..+...+...
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 44433 4456788888889998873333322334445566666666666666677777777776654
No 385
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.07 E-value=15 Score=37.62 Aligned_cols=137 Identities=16% Similarity=0.062 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 547 (608)
.+++++.-.+.+..+|+...+|..-+.+-.-.....-..-..+..-+++-+.+...++..+|+...+|+.+..++.+.+.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 35677777788888888887776332211100000011123333456778888999999999999999999999998764
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 548 --FEKAIEDCNAALNVRPGYSKARLRRADCFAKIE----KWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 548 --~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
+..=+..++++++.+|.+..+|..+=.+..... ...+=+++-.+++.-++.|-.+|.
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 688899999999999998888765555544332 246667788888888888877764
No 386
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.77 E-value=3.1 Score=41.06 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 283 ALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 283 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
|+.+|.+|+.+.|.....|..+|.++...|+.-.|+-+|-+++-...-.+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999997665567888888888877
No 387
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.71 E-value=2.2 Score=42.15 Aligned_cols=62 Identities=26% Similarity=0.178 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 517 AAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 517 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
|+.+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-...-.+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999998766678889999888887
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.52 E-value=7.5 Score=40.35 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
.+++.+|-+|+.+++|.+|++.|...+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 389
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.43 E-value=29 Score=34.68 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--DPYNSVLLCNRAACRSK 544 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~~~~ 544 (608)
+|..-..+|.-...+.|+..... +.+.+..+..-.+.++...+..... -..+..++-..|.++.+
T Consensus 311 DW~~I~aLYdaL~~~apSPvV~L-------------NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r 377 (415)
T COG4941 311 DWPAIDALYDALEQAAPSPVVTL-------------NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR 377 (415)
T ss_pred ChHHHHHHHHHHHHhCCCCeEee-------------hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH
Confidence 45565666666666666544332 5556666666666777776666554 22344566677888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 545 LGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
+|+.++|...|++++.+.++..+..+.+..
T Consensus 378 Lgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 378 LGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 888888888888888888777665544433
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.03 E-value=4.1 Score=39.65 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344555666666666666666666666666666666666666666666666655554
No 391
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.77 E-value=31 Score=36.45 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN 296 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~ 296 (608)
..-.+|+.++..|+|+-|...|+.+.+-.-+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~ 240 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN 240 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh
Confidence 3556899999999999999999998875433
No 392
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.54 E-value=26 Score=30.33 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=69.4
Q ss_pred HHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048 416 EALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA 495 (608)
Q Consensus 416 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 495 (608)
..+...+.....+.+++.++..++. +...+..+..+|... +..+.+..+.. ..+..+..
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~----------~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~------ 73 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSE----------NPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIE------ 73 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCcc----------chhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHH------
Confidence 3344567788888888888876543 266777777777654 44555565552 22333332
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
..+..+.+.+-++++..+|.+.- ....+.. .+....++++.|++++.+ ..+++.|..++..
T Consensus 74 -------~~~~~c~~~~l~~~~~~l~~k~~----~~~~Al~---~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~ 134 (140)
T smart00299 74 -------KVGKLCEKAKLYEEAVELYKKDG----NFKDAIV---TLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKA 134 (140)
T ss_pred -------HHHHHHHHcCcHHHHHHHHHhhc----CHHHHHH---HHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 33455566666666666665531 1111111 111223778888887775 3456777777665
Q ss_pred HH
Q 040048 576 FA 577 (608)
Q Consensus 576 ~~ 577 (608)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.10 E-value=21 Score=37.12 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
.....+.-++..++|..|...+..+...-|.... +..+. ....|..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~-------~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYK-------DLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677788999999999999999886444443 21111 124566677888999999999998765
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.67 E-value=18 Score=38.20 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC--C--CC---CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGL--D--PY---NSVLLCNRAACR--SKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~--~--p~---~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
..+.++...+.+.+|...+-++... . -. .+.++...|.|| ........-..-++| .+.-+..-|
T Consensus 305 l~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~~vLAg 377 (414)
T PF12739_consen 305 LLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFHMVLAG 377 (414)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHHHHHHH
Confidence 5667778888888877766665544 2 22 344555666666 111000000000000 112233447
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 574 DCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
.-|.+.|....|..+|..++....
T Consensus 378 ~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 378 HRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhC
Confidence 778999999999999999998765
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.59 E-value=3.6 Score=42.64 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
+..++.+|.+|+.+++|.+|++.|...+-
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777777766553
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.20 E-value=36 Score=35.39 Aligned_cols=131 Identities=10% Similarity=0.016 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh--HHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS--YRSNK--TAALIALGRLLEAVFECREAIRIEPH---YHRAHHRL 338 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l 338 (608)
-....+..++..++|..|...|+.+...-|.... .+..+ |.-++..-++.+|.+.++..+...-. ....+..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3456778889999999999999999985333332 34444 44556789999999999998765321 12222222
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
..+......+.......... ... .....+..++..+.--...|+|+.|+..+-+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQR-----QKK-LYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHhhccchhhhhcc-----ccc-cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22222221111111111110 000 02233444445555555678888888877777664
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.88 E-value=4.4 Score=39.43 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048 300 YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 359 (608)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.+.+.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556677778888888888888888888888888888888888888777777777654
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.81 E-value=98 Score=35.71 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHhCCCCCchhHHHHH---
Q 040048 301 RSNKTAALIALGRLLEAVFECREAIRIE----PHYHRAHHRLANLYLRLGEV--EKAIYHFKHAGPEADQVDIAKAK--- 371 (608)
Q Consensus 301 ~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~p~~~~~~~--- 371 (608)
+..|+..|...|+.++|++.+.+...-. +...+.+-.+-..+..++.. +-..++-.-.+. .+|.......
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~-~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLN-KNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhc-cCchhheeeeecc
Confidence 6778888888899999999888887732 22233444433444444433 333333333333 3333311100
Q ss_pred ----HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC--------hHHHHHH---------
Q 040048 372 ----SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK--------HQEADET--------- 430 (608)
Q Consensus 372 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~--------~~eA~~~--------- 430 (608)
....--.....+.......-++.+++.++..........+..++..|.+.=+ -+++.+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 0011112233355667777888889988887766555666666655554222 1122222
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK 480 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (608)
++..-..+|.. ..........|...+.++.++|+.++|+..|-..+.
T Consensus 666 l~~s~~Y~p~~---~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQL---LLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcch---hhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11111112221 111112256667777777778888888777765543
No 399
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=22 Score=38.35 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (608)
....++..+..+|-.++|++.. .+|+. +-.+..+.|+++.|.....++- .+.-|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s------~D~d~------------rFelal~lgrl~iA~~la~e~~------s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS------TDPDQ------------RFELALKLGRLDIAFDLAVEAN------SEVKWRQ 671 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC------CChhh------------hhhhhhhcCcHHHHHHHHHhhc------chHHHHH
Confidence 4445566666666666655432 23322 2233344455555544433321 1244556
Q ss_pred HHHHHHHcCChHHHHHHhhcCCC
Q 040048 414 QAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~ 436 (608)
+|++.+..+++..|.++|.++..
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhcc
Confidence 66666666666666666666543
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.31 E-value=38 Score=33.94 Aligned_cols=191 Identities=15% Similarity=0.058 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
+||+.+-+-...+-|..++++-.++.++++..+...=...--..+-+...+...| ..+-.+++...+.+++.
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~~ 284 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHHH
Confidence 5666666666777777777777666666543221110000000111111222222 12223455555555543
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048 361 EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440 (608)
Q Consensus 361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 440 (608)
.-.|.-......+......+. ....-||..-...|+......|+. .+-.+.+.......-.+.++...+.......-
T Consensus 285 ~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSP--vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 285 SRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSP--VVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred cCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCC--eEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 122221111111111111111 122347888888888887777764 45556666666666677777777665543111
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048 441 ETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 490 (608)
+ +....+...|.++.++|+.++|...|++++.+.++..+...
T Consensus 362 ~--------gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 362 D--------GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred c--------cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 1 22456677899999999999999999999999998877654
No 401
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=29 Score=34.52 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH--H
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP--Q 409 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~ 409 (608)
.+++...|..|.+.|+-+.|++.+.+..+ ..-.-..+.+.+-....+|..+....-..+.++..+..++.+.++.. .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~-ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE-KTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 56888999999999999999988887655 22222334444556666777777777777788888888888776543 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDV 439 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p 439 (608)
.....|.......++.+|-..|-.++....
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 344557777888999999999988876543
No 402
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=21 Score=38.44 Aligned_cols=134 Identities=19% Similarity=0.065 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
....++..+..+|-.+ +||++.++.. - +-.+..+.|+++.|.+...++ ++..-|..||.+....
T Consensus 616 ~rt~va~Fle~~g~~e-------~AL~~s~D~d-~---rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKE-------QALELSTDPD-Q---RFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchH-------hhhhcCCChh-h---hhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 3444454444444444 4455544432 1 224456778888887765544 4567789999999999
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ 425 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~ 425 (608)
|++..|.++|.++.. +.. +..++...|+-+.....-..+-+.+.. +..-.+|+..|+++
T Consensus 680 ~~l~lA~EC~~~a~d------------~~~---LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 680 GELPLASECFLRARD------------LGS---LLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYE 738 (794)
T ss_pred ccchhHHHHHHhhcc------------hhh---hhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHH
Confidence 999999999988754 111 111222223333222222222221111 12235677889999
Q ss_pred HHHHHhhcCCC
Q 040048 426 EADETLKNGPN 436 (608)
Q Consensus 426 eA~~~l~~al~ 436 (608)
++++.+...-.
T Consensus 739 ~C~~lLi~t~r 749 (794)
T KOG0276|consen 739 ECLELLISTQR 749 (794)
T ss_pred HHHHHHHhcCc
Confidence 99888876644
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.87 E-value=11 Score=35.16 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=55.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332 (608)
Q Consensus 271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 332 (608)
...+++.+...+|+...+.-++..|.+......+-..|.-.|+|++|...++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44677888899999999999999999999999999999999999999999999999998873
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.80 E-value=21 Score=36.64 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--- 528 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--- 528 (608)
-.++..+|.-|...|+++.|+..|-++-........+.. .+.++-.+-...|+|..-..+-.+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvIn---------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~ 220 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVIN---------MCLNLILVSIYMGNWGHVLSYISKAESTPDAN 220 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHH---------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence 467778999999999999999999997665544433322 23466677788888888777777776541
Q ss_pred -C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH-HHcCCH---HHHHHHHHH
Q 040048 529 -P----YNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--------RPGYSKARLRRADCF-AKIEKW---EASMQDYEI 591 (608)
Q Consensus 529 -p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~-~~~g~~---~~A~~~~~~ 591 (608)
. -.+.+.+.-|.+.+.+++|..|.++|-.+..- .|.+..+|-.+.-+- +...++ -..-..|+.
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~ 300 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKL 300 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhh
Confidence 0 11345666677777788999999998776532 345555554432221 111111 123356777
Q ss_pred HHHhCCCCHHH
Q 040048 592 LKKEAPDDEEV 602 (608)
Q Consensus 592 al~l~P~~~~~ 602 (608)
.+++.|.=.++
T Consensus 301 flel~Pqlr~i 311 (466)
T KOG0686|consen 301 FLELEPQLREI 311 (466)
T ss_pred HHhcChHHHHH
Confidence 77777765443
No 405
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.72 E-value=4.1 Score=27.53 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al 593 (608)
+.||.+|..+|+.+.|.+.++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.63 E-value=42 Score=30.60 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHH-cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 040048 407 APQIYALQAEALLK-LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL-----ACGRFEDALAAIQKAAK 480 (608)
Q Consensus 407 ~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~ 480 (608)
.|+...+++..+.. ..++++|..+|+.-...+. .+...+.+|..++ ..++...|++.|..+-.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-----------y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-----------YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 35667777776654 4678999999987765432 2555666665554 34578899999988765
Q ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-----CC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH---------
Q 040048 481 QDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-----AK--FSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--------- 544 (608)
Q Consensus 481 ~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~--~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--------- 544 (608)
.+.+.+.. .+|.++... ++ ..+|++++.++-++. +..+-++|...|..
T Consensus 102 --~n~~~aC~------------~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~a 165 (248)
T KOG4014|consen 102 --ANIPQACR------------YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNA 165 (248)
T ss_pred --cCCHHHHh------------hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccC
Confidence 34444443 455554432 23 678999999988764 33444444444433
Q ss_pred ---------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 040048 545 ---------------LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI----EKWEASMQDYEILKKE 595 (608)
Q Consensus 545 ---------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~l 595 (608)
..+.+.|.++--+|-+++ ++.+--++.+.|..- .+.++|..+-.+|.++
T Consensus 166 p~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 166 PGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred CCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 356778888888887764 566667777776542 3678888888888775
No 407
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.35 E-value=75 Score=32.77 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-------CC
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-------AD 405 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~ 405 (608)
.++..+|.-|...|+++.|++.|.++-. ... .....+..+++...+....++|-....+..++...- +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCT---s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARD-YCT---SAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhh-hhc---chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence 4677788888888888888888888544 222 233456667777777788888888777777666541 11
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNF 437 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 437 (608)
-.+.+...-|.+.+.+++|..|..+|-.+..-
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 12345666677788888999999988776543
No 408
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.03 E-value=6.1 Score=43.71 Aligned_cols=101 Identities=32% Similarity=0.558 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPY----NSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.-|+.++..+++.+|.--|..++.+-|. ......+.+.|+.. +|+|.+++....-++...|....+++..+.+|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y 137 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKY 137 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHH
Confidence 5567888889999998888888887663 34566778888776 56899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 577 AKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
...++++-|++.........|.+.++.
T Consensus 138 ~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 138 EALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999999999999999995543
No 409
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.78 E-value=60 Score=31.24 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIA-LGRLLEAVFECREAIR 326 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~ 326 (608)
+-+..+|.+....|+|++.+.++++++..++.- ..-...++.+|.. .|....+...+.....
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 346778889999999999999999999987764 3345555666533 3444555555544443
No 410
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=2.3 Score=42.44 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSN--NKEVNMVMR-----KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~-----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+.-.+..++++.|..-|.+++..-.. ....+.... .........+++.+-++.+.+..|+.....++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 455677888888888888887763220 000000000 0011223356788889999999999999999998888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
...+++.++..+....++++|++.++.+....|++....-.+..+-....+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 899999999999999999999999999999999998776665555444333
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.16 E-value=51 Score=30.07 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHH
Q 040048 261 RMDPETLKIMGNEDY-KAGNFAEALALYDAAISIDPNKASYRSNKTAALIA-----LGRLLEAVFECREAIRIEPHYHRA 334 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~-~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~eA~~~~~~al~~~p~~~~~ 334 (608)
..+|+.-..||..+. -+.+|++|...|..--+.+ ..+...+.+|..++. .++...|+..+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 467888888887664 4678888888887644433 234555666655443 3567888888888765 456777
Q ss_pred HHHHHHHHHH
Q 040048 335 HHRLANLYLR 344 (608)
Q Consensus 335 ~~~la~~~~~ 344 (608)
...+|.++..
T Consensus 108 C~~~gLl~~~ 117 (248)
T KOG4014|consen 108 CRYLGLLHWN 117 (248)
T ss_pred Hhhhhhhhcc
Confidence 7777777664
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.86 E-value=6.8 Score=42.97 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHH---HHhhcHHHHHHHHHHHHHcCCCChH
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDA---KRTRDWNTLIQETRAAIAGGADSAP 408 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~ 408 (608)
++...++-..|....+|+.-++..+..-. + |+.......-...+..+..+ -+-||-.+|+...-.+++......+
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~-i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR-I-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh-C-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 56677777788888888887777665433 2 22111111111111111111 2347889999999999988777778
Q ss_pred HHHHHHHHHHHH---------cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048 409 QIYALQAEALLK---------LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467 (608)
Q Consensus 409 ~~~~~la~~~~~---------~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (608)
+++.+-|++|-. .+..+.|+.+|+++++..|.. ..-.+++.++...|+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-----------~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-----------YSGINLATLLRAAGE 335 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-----------hccccHHHHHHHhhh
Confidence 888888887764 456678999999999999873 333456666666664
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.49 E-value=5.4 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 040048 278 GNFAEALALYDAAISIDPNKASYRSNKTA 306 (608)
Q Consensus 278 g~~~~Al~~~~~al~~~p~~~~~~~~la~ 306 (608)
|+++.|...|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34555666666666666655555554443
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.90 E-value=1.2e+02 Score=33.82 Aligned_cols=161 Identities=17% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Q 040048 303 NKTAALIALGRLLEAVFECREAIRIEPHYH--RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKC 380 (608)
Q Consensus 303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 380 (608)
..-.++.-.|+|+.|+.++-+ .+.+. .+|+.++..++ |-+.-.-..-...+. .++.+......... +...
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~--gLL~~~~~~~~~lls-~~~~~~~~ln~arL-I~~Y 334 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYY--GLLRVSDSSSAPLLS-VDPGDPPPLNFARL-IGQY 334 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHT--T-------------------------HHHH-HHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHc--CCCCCCCccccceee-ecCCCCCCcCHHHH-HHHH
Confidence 345677778999999988876 22222 23444444333 322222221133333 33333211111111 1111
Q ss_pred HHHHHhhcHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHcCChHH--------------HHHHhhcCCCCCCcccccc
Q 040048 381 TDAKRTRDWNTLIQETRAAIAGG-ADSAPQIYALQAEALLKLHKHQE--------------ADETLKNGPNFDVDETTRF 445 (608)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~la~~~~~~g~~~e--------------A~~~l~~al~~~p~~~~~~ 445 (608)
.-.....|...|+.++--+-... +......+..+.++.+..++++. .++-..+.+.+.....
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~--- 411 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDED--- 411 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSH---
T ss_pred HHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHH---
Confidence 11344566667776664443322 22222334444444444443332 2333333333332110
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478 (608)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (608)
....+....|.-....|++++|+.+|.-+
T Consensus 412 ----~~~~i~~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 412 ----FLREIIEQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp ----HHHHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01455666777777888888888777654
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.84 E-value=15 Score=35.60 Aligned_cols=79 Identities=16% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC
Q 040048 280 FAEALALYDAAISIDPNK------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HRAHHRLANLYLRLGE 347 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 347 (608)
-...++++.+|+...... ......+|..|+..|++++|+.+|+.+....... ..+...+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 344566666666543321 3346788999999999999999999997654332 4567778889999999
Q ss_pred HHHHHHHHHHh
Q 040048 348 VEKAIYHFKHA 358 (608)
Q Consensus 348 ~~~A~~~~~~a 358 (608)
.+..+.+.-++
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88888766554
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.51 E-value=6.9 Score=34.18 Aligned_cols=53 Identities=25% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL 314 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 314 (608)
..++.....+...+..|+|.-|..+.+.++..+|++..+...++.+|..+|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 46777888888888889999899988888888888888888888888776543
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.28 E-value=73 Score=30.86 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
.+|..|+..|+|++|+.+|+.+....... ..++..+..|+..+|+.+..+...-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56666666666666666666664432211 23444555556666665555544433
No 418
>PF12854 PPR_1: PPR repeat
Probab=77.03 E-value=6.2 Score=24.84 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDA 289 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~ 289 (608)
+|.-.|..+-..+.+.|+.++|+++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4555666666667777777777766654
No 419
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.01 E-value=1.3e+02 Score=33.74 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=63.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH---H---HHH
Q 040048 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN---L---YLR 344 (608)
Q Consensus 271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~---~---~~~ 344 (608)
-.+++..|+|+.|++++-+ .+....--..+|.++...|-+.-.-..-...+..++.++.. .+++. . .+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3567788999999999877 22222222334444444444433333225566666554221 22222 2 234
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH--------------HHHHHHHHHHcC--CCChH
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT--------------LIQETRAAIAGG--ADSAP 408 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------A~~~~~~al~~~--~~~~~ 408 (608)
..+..+|+++|--+-...++.... ..+-.........+++.. .++...+.+... .+...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~-----l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~ 414 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRN-----LFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLR 414 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHH-----HHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHH-----HHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHH
Confidence 568888998876553312222211 111111222222222222 222222232222 22234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
.+....|.-....|++++|+.+|.-+-+
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 5566677788888999999888876643
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.87 E-value=4.2 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 581 KWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+.+.|...|++++...|.+.++|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 4455555555555555555555543
No 421
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.60 E-value=65 Score=29.95 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCC----CCHHHHHHHHHHHHHcCCHHHHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDP----YNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
.+|..|. ..+.++|+.++.+++++.+ -+++++..|+.++.++|+++.|-
T Consensus 146 aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 146 ALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5555554 6678888888888888743 34788888888888888888774
No 422
>PF12854 PPR_1: PPR repeat
Probab=76.27 E-value=6.8 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
+...|..+-..|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355666666666666666666666654
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.27 E-value=4.9 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
+.+|..|..+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.84 E-value=33 Score=32.98 Aligned_cols=175 Identities=16% Similarity=0.138 Sum_probs=85.4
Q ss_pred HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-cCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-LHKHQEADETLKNGPNFDVDETTRFFGPIGNANL 454 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~ 454 (608)
+..++.++...++|++.+....+++..+++...+-..++..+|-. .|....+...+.......... ++..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~--------~~~~- 74 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENK--------GNEK- 74 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------TTHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhccc--------chhH-
Confidence 456778888999999999999999999888777777777777643 344444444433322211100 0000
Q ss_pred HHHHH-----HHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhh
Q 040048 455 LVVRA-----QVNLA-CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QAKFSEAAAAYGDGL 525 (608)
Q Consensus 455 ~~~la-----~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al 525 (608)
...+. .+-.. ..--.+.+..+...+-....+.+....+.+ ...+.+..++.+... ..-.+.|...|++|+
T Consensus 75 ~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~K-mkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 153 (236)
T PF00244_consen 75 QVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYK-MKGDYYRYLAEFDSGDEKKEAAEKALEAYEEAL 153 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH-HhccccccccccccchhhHHHHHHHHHhhhhHH
Confidence 00011 00000 011123333333333222333333322211 112222223322211 112356777777776
Q ss_pred c-----CCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 040048 526 G-----LDPYNSV---LLCNRAACRSK-LGQFEKAIEDCNAALN 560 (608)
Q Consensus 526 ~-----~~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 560 (608)
. +.|.+|. +..+.+..|+. +|+.++|++..++|+.
T Consensus 154 ~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 154 EIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5 3566653 44455655544 8888888888877765
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.74 E-value=52 Score=28.38 Aligned_cols=48 Identities=6% Similarity=0.081 Sum_probs=28.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECR 322 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 322 (608)
+...+.....+.+++.++..++.++..+..+..+|... +..+.+..+.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 33456677777777777776666666666666666543 2334444444
No 426
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=87 Score=30.78 Aligned_cols=104 Identities=7% Similarity=-0.042 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+++.++|..|.+.++.+.+.+++.+.+...-... .+-. ...-..+|.+|..+.-.++.++.....++...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv-------~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV-------FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh-------HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999988876432211 1111 111236777777777777777777777776443
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 531 N---SVLLCNRAACRSKLGQFEKAIEDCNAALNVR 562 (608)
Q Consensus 531 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 562 (608)
- -..-...|.......+|.+|-..+-.++...
T Consensus 188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2 1222345666666778888888887777544
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.85 E-value=1e+02 Score=30.88 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH----------------------- 330 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------------------- 330 (608)
..+..+-.+-+..-..+++++|..+.++..++.-- ..-..+|...++++++....
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhccc
Confidence 34555666667777788888888888887776532 23355667777766653110
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 331 Y--HRAHHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 331 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
+ ...-..|+.|-.++|+..+|++.++...+
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0 11234566666666777777666666544
No 428
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.04 E-value=1.7e+02 Score=33.19 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+-.++.+..+++.++.+++.. .++++..|..+-..+...+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 344555666666666666653 445666777666666666655555555555543
No 429
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.99 E-value=1.2e+02 Score=30.54 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
+.+-+..+..+...+++.++...+.+++-+.|+....
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~ 249 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPF 249 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHH
Confidence 6666777777788888999999998888888875444
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=1.3e+02 Score=29.66 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHHhh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHH
Q 040048 311 LGRLLEAVFECREAIRI-EPH-----YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAK 384 (608)
Q Consensus 311 ~g~~~eA~~~~~~al~~-~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (608)
...-++-++.+.+.++- ..+ -.+++.++|..|.+.++.+.+.+...+.++ -.-....+...+.....+|.++.
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~-~a~stg~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMR-DAMSTGLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHhcccchhhHHHHHHHHHhhc
Confidence 33445555556444432 222 256889999999999999999888877654 22222223334445556666676
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHcCChHHHHHHhhcCCCCC
Q 040048 385 RTRDWNTLIQETRAAIAGGADSAP--QIYALQAEALLKLHKHQEADETLKNGPNFD 438 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~~~--~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 438 (608)
...-..+.++....+++.+.+... ......|...+...++.+|-..+..++...
T Consensus 167 d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 167 DRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 666677888888888888776543 233445777777888999988887776544
No 431
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=67.75 E-value=1.7 Score=47.34 Aligned_cols=102 Identities=22% Similarity=0.120 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCC--CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGP--NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN 484 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al--~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 484 (608)
........+..+...|++..|...+.+.. .+.+.. .....+..|.+....|++++|+..+... ....-
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q---------~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~~l 92 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ---------QARYQLLRARLALAQGDPEQALSLLNAQ-DLWQL 92 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH---------HHHHHHHHHHHHHhcCCHHHHHHHhccC-CcccC
Confidence 34556666778888888888888887765 222221 2556667788888888888888887641 11111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 485 NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
..... ...+..++.++...|++-+|...+-.+-.
T Consensus 93 ~~~~~--------~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 93 PPEQQ--------ARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ------------------------------------------
T ss_pred CHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 11111 11223567778888888777776554443
No 432
>PF13041 PPR_2: PPR repeat family
Probab=67.68 E-value=26 Score=23.98 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
...|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 344555555555666666666666655543
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.38 E-value=35 Score=29.16 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=37.3
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 550 KAIEDCNAALN--VRPGYSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 550 ~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
++.+.|..+.. +.-..+..|...|..+...|++++|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 88888888776 456778999999999999999999999999875
No 434
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.52 E-value=22 Score=27.25 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAIS 292 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~ 292 (608)
..+...|..+-..|++.+|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455556666666777777666665554
No 435
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.23 E-value=22 Score=32.96 Aligned_cols=45 Identities=24% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
++..++.+...| ++..+.+++.++...|+.++|....+++..+.|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444444 245555555566666666666666666666655
No 436
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.58 E-value=46 Score=34.51 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc-----------CCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLG-----------LDPYNSVLLCNRAACRSKLGQF----------EKAIEDCNAA 558 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a 558 (608)
.++..|.+.+....|++|+.++-.|-+ .-.+.+..-..+-+||+.+.+. ..|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 345677777777888888776655433 3334455556677888887753 3344444444
Q ss_pred Hh--------c-CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 559 LN--------V-RPGYS------KARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 559 l~--------~-~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
.- + .+..+ ..+..-|.+.+.+|+-++|.++++.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 32 1 12222 3445668999999999999999998864
No 437
>PF13041 PPR_2: PPR repeat family
Probab=63.44 E-value=19 Score=24.74 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAIS 292 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~ 292 (608)
..|..+-..+.+.|++++|.++|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555555555555555555544
No 438
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.29 E-value=37 Score=26.01 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=9.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 040048 539 AACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 539 a~~~~~~g~~~~A~~~~~~al~ 560 (608)
|.-+-+.|++.+|+.+|+++++
T Consensus 13 AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 3333444554444444444433
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.24 E-value=26 Score=30.60 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
...+.-.+..|++.-|.+..+.++..+|++..+...++.+|.++|
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555444
No 440
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=62.94 E-value=63 Score=35.35 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 508 LFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 508 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
+.+....+.+....+.-+.-....+...+..|..+...++.+.|-.+|++.+..+|+ ..++..|.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 344555666666666655555555666666777777777778888888888777777 566677777777777766666
Q ss_pred HHH
Q 040048 588 DYE 590 (608)
Q Consensus 588 ~~~ 590 (608)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 655
No 441
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.94 E-value=2.9e+02 Score=32.02 Aligned_cols=182 Identities=14% Similarity=0.008 Sum_probs=92.7
Q ss_pred HHHHHHhHHHHHhhcHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHcCCh--HHHHHHhhcCCCCCCcccccccCC
Q 040048 374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGG---ADSAPQIYALQAEALLKLHKH--QEADETLKNGPNFDVDETTRFFGP 448 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~la~~~~~~g~~--~eA~~~l~~al~~~p~~~~~~~~~ 448 (608)
.-+..+...|...|+.++|++.+....... .......+...-..+...+.. +-..++-.=.+..+|......+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 345567777888888888888888877633 112223333344444444444 444444444444444433322221
Q ss_pred CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHH--H
Q 040048 449 IGN---ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN-MVMRKAKGVAAARSNGN-ALFKQAKFSEAAAA--Y 521 (608)
Q Consensus 449 ~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~lg~-~~~~~g~~~eA~~~--~ 521 (608)
... ...--....-|+.....+-++.+++.++.........+ ..+.. .|..... .-...++-+++.+. .
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~-----ly~e~v~~~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLK-----LYLEKVLEQASTDGKGEEAPETTVR 659 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHH-----HHHHHHhhccCchhccccchhhhHH
Confidence 000 00001122234566777888889998887666533332 21100 0111111 01111222333333 2
Q ss_pred HHhhc-------CCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 522 GDGLG-------LDPY-------NSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 522 ~~al~-------~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
++... .+|. ....|...+.++.++|+.++|+..|-..|.
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 22221 1221 246788889999999999999988877665
No 442
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.52 E-value=15 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHh
Q 040048 310 ALGRLLEAVFECREAIR 326 (608)
Q Consensus 310 ~~g~~~eA~~~~~~al~ 326 (608)
..|+|++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34566666666666654
No 443
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=61.62 E-value=2.4e+02 Score=30.85 Aligned_cols=136 Identities=20% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
++..-++.++|+..+++...-.+. +-.....|.++...+ ....-..+|+.++.++|.......
T Consensus 318 lLl~~~~l~eal~~~e~~c~~~~~-----------~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le---- 382 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCISSTC-----------ALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLE---- 382 (547)
T ss_pred EEeccccHHHHHHHHHHhccCCCc-----------cchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHH----
Confidence 344458889998888775433322 334445566666655 566777889999999998665443
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhc---------
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDG---LGLDPYNSVLLCNRAACRSK-LGQFEKAIEDCNAALNV--------- 561 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a---l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~--------- 561 (608)
.+...+.. ...+..+++-. +.+. ....+|..++.++.+ .++++.-.+....++++
T Consensus 383 --------~l~~~~~~---~~~~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~ 450 (547)
T PF14929_consen 383 --------RLILLHQK---DYSAEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAG 450 (547)
T ss_pred --------HHHhhhhh---HHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccc
Confidence 22222222 44455555522 2334 346788888888888 67776556666666532
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 040048 562 RPGYSKARLRRADCFAKI 579 (608)
Q Consensus 562 ~p~~~~a~~~la~~~~~~ 579 (608)
...+..+|..++....+.
T Consensus 451 ~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 451 WRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred cccccHHHHHHHHHhhHh
Confidence 123456666666555433
No 444
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.53 E-value=13 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~a 558 (608)
.+-..|.+.|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3334444444444444444433
No 445
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.53 E-value=5.7e+02 Score=34.55 Aligned_cols=327 Identities=12% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISI---------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
..|..|.+.|.+++|...|++|... .++....--..-.|...+.+|+--.++. ....-+..+-
T Consensus 2487 ~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~--------k~~~~~~lll 2558 (3550)
T KOG0889|consen 2487 MVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFG--------KHEGNYELLL 2558 (3550)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hccCCceeee
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc-------CCCChHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG-------GADSAPQIYA 412 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~ 412 (608)
.+..+.-++..-.+.+.+......+...........+........+ ...+......++++. .|.-....+.
T Consensus 2559 e~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~ 2636 (3550)
T KOG0889|consen 2559 ECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSN--GVGEFERLIGEAIQLAIREWRQLPERVNHGHV 2636 (3550)
T ss_pred ehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHhCccccchhhH
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPI---------GNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-- 481 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 481 (608)
.+-..+...-...||..++...........+...... ..+..|-.+.....-..--..+.....++..-
T Consensus 2637 ~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~ 2716 (3550)
T KOG0889|consen 2637 PLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLV 2716 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHcC-CHHHHHH
Q 040048 482 ---DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV----LLCNRAACRSKLG-QFEKAIE 553 (608)
Q Consensus 482 ---~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g-~~~~A~~ 553 (608)
.............-..+++....|.+..+.|-++-++..+.+...+..-... -+..-+.||.... .+..+++
T Consensus 2717 ~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLe 2796 (3550)
T KOG0889|consen 2717 PYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLE 2796 (3550)
T ss_pred hhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHH
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 554 DCNAALNV---RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 554 ~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+.+..=-. +...++.+...|..+.++|+.++|-..|..|++++-.-..+|..
T Consensus 2797 vi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~ 2851 (3550)
T KOG0889|consen 2797 VIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAE 2851 (3550)
T ss_pred HHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHH
No 446
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.05 E-value=38 Score=28.63 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK---------------ASYRSNKTAALIALGRLLEAVFECRE 323 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~ 323 (608)
-+..+|+..++.+++-.++-.|++|+.+..+- .....++|..+..+|+.+-.+++++-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 46678888999999999999999988653211 12345666666667766666666643
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.75 E-value=96 Score=31.07 Aligned_cols=98 Identities=5% Similarity=-0.033 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDP------YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS---KA 568 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a 568 (608)
.+++..+|..|++.|+-+.|++.+.+..+..- +-......+|.+|....-..+-++-.+..++..-+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34556999999999999999999888765422 2223445677777666555666666666666554431 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
....|.......+|.+|...|-.++.-
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 233455666677888888888776543
No 448
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.65 E-value=20 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 040048 540 ACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~~ 561 (608)
.-.-..|+|++|+.+|..+++.
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHH
Confidence 3345788889999888888874
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=58.51 E-value=1.8e+02 Score=30.06 Aligned_cols=55 Identities=11% Similarity=-0.173 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHH--HHHHcCCHHHHHHHHHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNK-----ASYRSNKTA--ALIALGRLLEAVFECRE 323 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~--~~~~~g~~~eA~~~~~~ 323 (608)
..+..++..++|..|...|+.++...+.. ...+..+.. .++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35668899999999999999999875422 233444444 45668899999999986
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.47 E-value=10 Score=36.00 Aligned_cols=94 Identities=12% Similarity=-0.023 Sum_probs=58.0
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCC---CCC---------HHHHHHHHHHHHHcCCHHH-H-HHHHHHHHhc--CCCC--HH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLD---PYN---------SVLLCNRAACRSKLGQFEK-A-IEDCNAALNV--RPGY--SK 567 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~---p~~---------~~~~~~la~~~~~~g~~~~-A-~~~~~~al~~--~p~~--~~ 567 (608)
.-++..|+|+.|+.+..-+|+.+ |+. ++-....+......|..-+ + ...+.....- -|+. ..
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 44578899999999999999874 322 1223344445555665211 1 1222222211 2343 34
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q 040048 568 ARLRRADCFA---------KIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 568 a~~~la~~~~---------~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.|...|..+. ..++...|+.++++|++++|+-
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 4556677663 4568889999999999999874
No 451
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.61 E-value=1.1e+02 Score=34.16 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC-CCC
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK------ASYRSNKTAALI---ALGRLLEAVFECREAIRIE-PHY 331 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~---~~g~~~eA~~~~~~al~~~-p~~ 331 (608)
..++...++-..|....+|+.-+.+.+.. +.-|+. ....+.++-++- .-|+-++|+...-.+++.. |-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 46888888888899999998887777664 444432 111222233332 2578899999988888764 444
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHhCCCCCchhHH
Q 040048 332 HRAHHRLANLYLRL---------GEVEKAIYHFKHAGPEADQVDIA 368 (608)
Q Consensus 332 ~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~ 368 (608)
++.+..-|.+|..+ +..+.|+++|+++.+ ..|....
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe-veP~~~s 322 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE-VEPLEYS 322 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc-cCchhhc
Confidence 66777777777643 567788999999988 8887643
No 452
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.33 E-value=16 Score=21.59 Aligned_cols=28 Identities=7% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3667788999999999999999987754
No 453
>PRK12798 chemotaxis protein; Reviewed
Probab=57.22 E-value=2.5e+02 Score=29.35 Aligned_cols=232 Identities=14% Similarity=-0.011 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhcCCCChhHHHHHHHHHHHcCCH
Q 040048 237 NYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDA--AISIDPNKASYRSNKTAALIALGRL 314 (608)
Q Consensus 237 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~--al~~~p~~~~~~~~la~~~~~~g~~ 314 (608)
+.++.+...+--.+............+.+.-...|...|..|+-.+|...+.. ...+.+.-.-......-..+...+.
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Q ss_pred HHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 315 LEAVFECREAIRIEPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 315 ~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
.+|+..|+.+--+.|.. .-++..--.+....|+.+++..+-.+.+. ........-..+-.......+..+-..
T Consensus 165 ~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~r----RF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLR----RFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH----HhccCchHHHHHHHHHHHHHhcccccc
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHH
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA 471 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (608)
-.....-.-.++++....+|..++..-.-.|+.+-|.-.-++++.+...+.... ..+.+..+....-..+++++
T Consensus 241 ~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~------~ra~LY~aaa~v~s~~~~~a 314 (421)
T PRK12798 241 DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADA------ARARLYRGAALVASDDAESA 314 (421)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcch------HHHHHHHHHHccCcccHHHH
Q ss_pred HHHHHHH
Q 040048 472 LAAIQKA 478 (608)
Q Consensus 472 ~~~~~~a 478 (608)
+..+..+
T Consensus 315 l~~L~~I 321 (421)
T PRK12798 315 LEELSQI 321 (421)
T ss_pred HHHHhcC
No 454
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=56.72 E-value=2.2e+02 Score=28.54 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR----IEPHYHRAH 335 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~~p~~~~~~ 335 (608)
.+..++..-.+-..+ ..+++.+.++..++.+...|-..+.++..+.++.++|. +.+.......+. .-|.-...
T Consensus 96 ~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L- 172 (301)
T TIGR03362 96 APPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLEL- 172 (301)
T ss_pred CCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhc-
Confidence 345555555554444 77888999999999999999999999999999999994 555554443332 23322110
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHhCCCC-------CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 336 HRLANLYLRLGE---VEKAIYHFKHAGPEA-------DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 336 ~~la~~~~~~g~---~~~A~~~~~~al~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
.+..|- -++....+....... .+.. ............+......+..+.|+..++..+.....
T Consensus 173 ------~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s 245 (301)
T TIGR03362 173 ------KFSDGTPFADDETRAWLAQHATRSNAASVAPVAEV-GEESDWEELREEARALAAEGGLEAALQRLQQRLAQARE 245 (301)
T ss_pred ------ccCCCCCCCCHHHHHHHHhcccccccccccccccC-cccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCC
Confidence 000010 011111111100000 0000 00000222223344555566777777777766553333
Q ss_pred --ChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 406 --SAPQIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 406 --~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
........++.++...|.++-|...|....+
T Consensus 246 ~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 246 PRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334455667888888888888887776654
No 455
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.21 E-value=39 Score=37.67 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIA--LGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
....-|+.++..+++..|.--|..++.+-|.+ .....+.+.|+.. .|+|.+++....-++...|....++...+
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 34556888899999999988888888887743 4456777777776 57899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
.+|...+.++-|++...-... ..|.+
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~-~~p~~ 160 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEK-MDPSN 160 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CCCCc
Confidence 999999998888888655555 77776
No 456
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=55.32 E-value=2.5e+02 Score=34.36 Aligned_cols=144 Identities=13% Similarity=0.019 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HHHHHHHHH----------------------
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG--VAAARSNGN---------------------- 506 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~lg~---------------------- 506 (608)
.......+|.+++..|++.+|+..|.+++.......+... +..+-+ +.+...++.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW-~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLW-LASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhh-hHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 3677778999999999999999999999886544333221 111100 000000000
Q ss_pred ----------------------------------HHHHcCCHHHHHHHHHHhhcCC----CC--CHHHHHHHHHHHHHcC
Q 040048 507 ----------------------------------ALFKQAKFSEAAAAYGDGLGLD----PY--NSVLLCNRAACRSKLG 546 (608)
Q Consensus 507 ----------------------------------~~~~~g~~~eA~~~~~~al~~~----p~--~~~~~~~la~~~~~~g 546 (608)
...-...+++|+.+|.++.... |. ..++...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 0011124678888888886432 22 2356666777777777
Q ss_pred --------------------CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 547 --------------------QFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 547 --------------------~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.-.++.....+++.+... ....+..+|.+|..+|-..++.-+.+.++..
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 677888888888776432 2567889999999999887777676666553
No 457
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.24 E-value=26 Score=21.15 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 535 LCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 535 ~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
|..+-..|.+.|++++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 458
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.25 E-value=78 Score=27.33 Aligned_cols=55 Identities=25% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 507 ALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 507 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
.+...|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566666666666666544556777777777777777777777777777653
No 459
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.58 E-value=2.6e+02 Score=28.10 Aligned_cols=93 Identities=16% Similarity=0.046 Sum_probs=66.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPY--------NSVLLCNRAACRSKLGQFEKAIEDCNAALN--VRPGYSKARL 570 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~ 570 (608)
...+|.+|.+.++|..|...+.- +..+.. ....+..+|.+|.+.++..+|..+..++-- .+..+.....
T Consensus 106 rl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 106 RLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 34899999999999999887753 333221 134677899999999999999999988733 2334544433
Q ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 571 ----RRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 571 ----~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
..|+++...++|-+|...|-+...
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777888888777766654
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.45 E-value=57 Score=31.11 Aligned_cols=106 Identities=10% Similarity=-0.036 Sum_probs=59.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHhhcC--CCCC--HH
Q 040048 460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE--AAAAYGDGLGL--DPYN--SV 533 (608)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e--A~~~~~~al~~--~p~~--~~ 533 (608)
.-.+..|+++.|+++..-+++.+-.-++-+..-...-.++....-+......|+.-+ -...+...... -|+. +.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 345789999999999999999664333211100000011222233444455554211 11222222211 1222 44
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCC
Q 040048 534 LLCNRAACRS---------KLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 534 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 565 (608)
.|-..|..+. ..++...|+.++++|+.++|..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 5666777773 4567889999999999999874
No 461
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.56 E-value=27 Score=27.05 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHh
Q 040048 312 GRLLEAVFECREAIR 326 (608)
Q Consensus 312 g~~~eA~~~~~~al~ 326 (608)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555555443
No 462
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.93 E-value=4.2e+02 Score=30.06 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=47.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 040048 273 EDYKAGNFAEALALYDAAISIDPNK--ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV 348 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 348 (608)
.++..+.|++|+..-+.....-|.. ...+..+-.-+...|+|++|-..+-+++. ++...|...-..+...++.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhcccccc
Confidence 4567888999999887766665542 23444555556778999998887766643 4455555555555555554
No 463
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.92 E-value=2.8e+02 Score=27.81 Aligned_cols=104 Identities=21% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCC-CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFD-VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAA--KQDSNN 485 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~ 485 (608)
.+...+|.+|.+.++|..|-..+.-..... +.. ++.......+..+|.+|...++..+|..+..++- ..+..+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~----~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKA----YDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhh----hhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 345566777777777777777665443322 111 0111126778899999999999999999988763 334455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 486 KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524 (608)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 524 (608)
......+. ...|+++-..++|-||-..|-+.
T Consensus 180 e~Lqie~k--------vc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 180 EQLQIEYK--------VCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443221 13455555566666666555443
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=49.74 E-value=3.2e+02 Score=28.36 Aligned_cols=60 Identities=12% Similarity=0.012 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 457 VRAQVNLACGRFEDALAAIQKAAKQDSNNKE--VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523 (608)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 523 (608)
..+..++..++|..|...|..++...+.... .+..+ .....|..+...-++++|...+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~-------~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAM-------IKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHH-------HHHHHHHHHHHccCHHHHHHHHhh
Confidence 3555778999999999999999987543221 11111 112455666778889999999986
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.61 E-value=35 Score=20.56 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.|..+-..|.+.|++++|.+.|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566778899999999999999998764
No 466
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=49.41 E-value=1.7e+02 Score=25.02 Aligned_cols=62 Identities=16% Similarity=0.032 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPY----------------NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
..+-.++...|+.+.-..+.++...++.+ ...++..+..+|...|++..|+++.+...+..|
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 34455666677777777777766654321 145666777777777777777777777666543
No 467
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=49.36 E-value=1.5e+02 Score=26.44 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH---------------------------HHHHHHHHHHHHHHH
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM---------------------------RKAKGVAAARSNGNA 507 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------------------------~~~~~~~~~~~lg~~ 507 (608)
....+...+..|+.++|+..+.++...-.....-+..+ .-..........++-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 45678888899999999999998876432211111100 011223344566677
Q ss_pred HHHcCCHHHHHHHHHHhhcC-------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 508 LFKQAKFSEAAAAYGDGLGL-------DP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 508 ~~~~g~~~eA~~~~~~al~~-------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
.++.|+...|.+.++-+-.- -| .........+..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777777655321 11 1123444566667777777777777766653
No 468
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.22 E-value=2.7e+02 Score=27.42 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccc-cccCCCCcHHHHHHHHH
Q 040048 382 DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETT-RFFGPIGNANLLVVRAQ 460 (608)
Q Consensus 382 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-~~~~~~~~~~~~~~la~ 460 (608)
.+..+++|.+++...-+..+...+..+.+..+-..+|.+.+++....+.-..-+.. |++.. .-+. .-+-..+-.
T Consensus 92 ALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~----~vaELyLl~ 166 (309)
T PF07163_consen 92 ALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYG----TVAELYLLH 166 (309)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhH----HHHHHHHHH
Confidence 45677899999888877777666666777777778889999998888776665542 33211 0010 222233445
Q ss_pred HHHHcCCHHHHHHHHH
Q 040048 461 VNLACGRFEDALAAIQ 476 (608)
Q Consensus 461 ~~~~~g~~~~A~~~~~ 476 (608)
++.=.|.+++|.++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 5556899999998873
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.69 E-value=1.7e+02 Score=24.92 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHH
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG--LDPYNSVLLCNRAACRS 543 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~la~~~~ 543 (608)
+....-...+++++....++.....-.+. + .+-..|...-. ++..+|..+.. +....+..|...|..+.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~Ry---l----kiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le 110 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERY---L----KIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLE 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHH---H----HHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHH---H----HHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 34455566777777765554332211110 1 22223333322 78888887765 45677899999999999
Q ss_pred HcCCHHHHHHHHHHHH
Q 040048 544 KLGQFEKAIEDCNAAL 559 (608)
Q Consensus 544 ~~g~~~~A~~~~~~al 559 (608)
..|++++|.+.|+.+|
T Consensus 111 ~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 111 KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhC
Confidence 9999999999999875
No 470
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.83 E-value=1.6e+02 Score=28.98 Aligned_cols=160 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA--------CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 497 (608)
.|++.-...+..+|.. ..+|...-.+... ..-.+.-+.++..+++-+|.+..+|.
T Consensus 50 ~aLklt~elid~npe~----------ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~------- 112 (328)
T COG5536 50 RALKLTQELIDKNPEF----------YTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWH------- 112 (328)
T ss_pred HHHHHhHHHHhhCHHH----------HHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhH-------
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 498 VAAARSNGNALFKQ--AKFSEAAAAYGDGLGLDPYNSVLLCNRAACR------SKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 498 ~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
..-.++..- ..+..-+.+.++.++.++.+...|...-.+. ..-..+..-.++-..+|..++.+..+|
T Consensus 113 -----HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW 187 (328)
T COG5536 113 -----HRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAW 187 (328)
T ss_pred -----HHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHH
Q ss_pred HHH---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 570 LRR---ADCFAKIEK------WEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 570 ~~l---a~~~~~~g~------~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
... -...+..|+ +++-+++...++-.+|+|..+|.-+.
T Consensus 188 ~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 188 HHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
No 471
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.69 E-value=1.2e+02 Score=33.35 Aligned_cols=56 Identities=16% Similarity=0.011 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 299 SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356 (608)
Q Consensus 299 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 356 (608)
...+..+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 43 LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444444444555555555555555555544 344444555555555555544444
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.23 E-value=1.2e+02 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 547 (608)
+........|.+....|++..|.+...++-+..+.....+..-|.+-..+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3344444667777777777777777777766644444444444555554443
No 473
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=47.10 E-value=92 Score=33.62 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHh
Q 040048 549 EKAIEDCNAALNV-----RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE------APDDEEVDQAL 606 (608)
Q Consensus 549 ~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~L 606 (608)
..++..|.+|+.. +..+..-|..+|-.|++.+++.+|+..+-.+-.. .-+|.++++.+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEf 364 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEF 364 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHH
Confidence 4455555555543 2233455666677777777777777777666442 33455555544
No 474
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.10 E-value=1.2e+02 Score=25.67 Aligned_cols=69 Identities=9% Similarity=-0.089 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNK-----EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 525 (608)
+..+|...+..+++-.++-.|++|+.+..+-. +... .....+.+..++|..+...|+.+-.+++++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~d--ll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELED--LLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHH--HHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 45688899999999999999999987543221 1100 011223445677777777777777777765443
No 475
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=46.99 E-value=48 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~a 558 (608)
..+..++.+.|+++.|...|+..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444444444444443
No 476
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.48 E-value=58 Score=30.05 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 514 FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 514 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
.+..++..++.+...| ++.++..++.++...|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455666777777777 4889999999999999999999999999999993
No 477
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.39 E-value=2.3e+02 Score=29.82 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHH-------------------------------------HHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNK---EVNMV-------------------------------------MRKAKG 497 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~-------------------------------------l~~~~~ 497 (608)
++.-|...|.|+.|+.++.+-+-+..-.+ ..... ...+..
T Consensus 124 laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 203 (422)
T PF06957_consen 124 LAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLSS 203 (422)
T ss_dssp SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HHH
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCHHH
Confidence 56778899999999999987544211000 00000 011122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-----CC---HHHH--------HHHHHHHH-HcCCH-HHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDP-----YN---SVLL--------CNRAACRS-KLGQF-EKAIEDCNAAL 559 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~---~~~~--------~~la~~~~-~~g~~-~~A~~~~~~al 559 (608)
+......|.-++..|++.+|+..|+.+|..-| +. .++. |.+|.... ..... +...+.-++.+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 33445678889999999999999999886422 11 1111 12222111 11111 11111222223
Q ss_pred hc---------CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 560 NV---------RPGYSKARLRRAD-CFAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 560 ~~---------~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
++ .|.+...-++.|. ..++.++|..|...-++.|++.|....+.
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 22 2322222223333 34678999999999999999999876543
No 478
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.10 E-value=6.7 Score=42.82 Aligned_cols=100 Identities=15% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHH--HcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcC--CCCCCcccccccCC
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAI--AGGADSAPQIYALQAEALLKLHKHQEADETLKNG--PNFDVDETTRFFGP 448 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~a--l~~~p~~~~~~~~~ 448 (608)
....+..+..+...|++..|...+..+- .+.+..........|.+....|++++|+..+... ..+.+.
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~-------- 95 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPE-------- 95 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHH--------
Confidence 4556666777888899999998888776 3455555677788899999999999999998742 111111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 449 IGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481 (608)
Q Consensus 449 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (608)
.....+..++.++...|++-+|...+-.+-.+
T Consensus 96 -~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 96 -QQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------------
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 12566677889999999988888766554443
No 479
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=46.09 E-value=2.9e+02 Score=26.76 Aligned_cols=174 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhcHHHHHHHHHHHHHc-CC-CChHHHHHHHHHHHHHc-CChHHHHHHhhcCCCC-CCcccccccCCCCc
Q 040048 376 HLNKCTDAKRTRDWNTLIQETRAAIAG-GA-DSAPQIYALQAEALLKL-HKHQEADETLKNGPNF-DVDETTRFFGPIGN 451 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~A~~~~~~al~~-~~-~~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~-~p~~~~~~~~~~~~ 451 (608)
+..++.+..+.++|++.+....++++. ++ ....+-..++..+|-.. |....+...+...-.. ....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~---------- 73 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG---------- 73 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccC----------
Q ss_pred HHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHH
Q 040048 452 ANLLVVRAQVNLACGRFE------DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS---EAAAAYG 522 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~---eA~~~~~ 522 (608)
..-...+..-|...=.-+ +.+.++...+-....+.+....+.+ ...+-|+.++.+.....+.+ .|...|+
T Consensus 74 ~~~~~~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~K-mKGDYyRYlaE~~~~~e~~~~~~~a~~aY~ 152 (244)
T smart00101 74 NEDHVASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLK-MKGDYHRYLAEFKTGAERKEAAENTLVAYK 152 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHH-HHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q ss_pred HhhcC--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 040048 523 DGLGL--------DPYNSVLLCNRAACRSK-LGQFEKAIEDCNAALN 560 (608)
Q Consensus 523 ~al~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 560 (608)
.|+++ +|-...+..+.+..|+. +++.++|+...++++.
T Consensus 153 ~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 153 SAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 480
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.73 E-value=95 Score=35.69 Aligned_cols=182 Identities=14% Similarity=0.045 Sum_probs=103.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH-------HHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRS-------NKTAALIALGR--------LLEAVFECREAIRIEPHYHRA 334 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-------~la~~~~~~g~--------~~eA~~~~~~al~~~p~~~~~ 334 (608)
++..++.-|.+..|...|....+.. .+-.++. +.+..++-.++ .+.|+..|....+..+.....
T Consensus 182 ~aD~~~~f~h~~~a~~~y~stkrd~-~nd~am~~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~~~~A~rc 260 (960)
T KOG1938|consen 182 GADLLFMFGHPNLAFDAYHSTKRDF-NNDKAMVYYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKNYQDANRC 260 (960)
T ss_pred ccchhhhhccccchhhhhhhhhcch-hhhhHHhHhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhhccchhhh
Confidence 4455556666677777776654432 2222221 12222222222 245777777777776666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC---CCC---hH
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG---ADS---AP 408 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~---~~ 408 (608)
.+..+.++...|.+.+|.+.+-+... .+ +++..|+-.+..++-.. |.. ..
T Consensus 261 ~l~~aei~k~~~lh~eaa~~~~r~~s-ee-----------------------~dl~~allleqaal~f~~tkp~m~~ktf 316 (960)
T KOG1938|consen 261 VLNSAEILKFLGLHKEAAEALARETS-EE-----------------------GDLLSALLLEQAALCFGSTKPPMPRKTF 316 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhC-cC-----------------------chhhhHHHHHHHHHHhhcCCCCccchhh
Confidence 88888999999999999888877654 22 33444554444444332 111 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ 481 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 481 (608)
....+-+..+...+....|+.+|..++...+.....+. ....++.++..|.-. ..++|-..+.+++..
T Consensus 317 fHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~----edh~~f~i~~~y~l~-~~D~a~~~f~~~i~~ 384 (960)
T KOG1938|consen 317 FHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFA----EDHLYFTILHVYLLC-QEDDADEEFSKLIAD 384 (960)
T ss_pred cceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchh----HHhHHHhHHHhhhhh-cchhHHHHHHHHHhh
Confidence 11223456677778889999999999887665433222 245556666644333 334555555555443
No 481
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.64 E-value=55 Score=19.71 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.|..+-.++.+.|+++.|...|+...+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677888999999999999999987763
No 482
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.87 E-value=48 Score=24.70 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAI 291 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al 291 (608)
..|..+-..|++++|+.+|.+++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444555555555554443
No 483
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.54 E-value=3.5e+02 Score=27.35 Aligned_cols=267 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-------
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA------- 339 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la------- 339 (608)
+-.+|...+..|+..-|..+++. -..-...--.+..+|+++.| +.+|++....+.-....+-
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~--------Ep~~~~qVplLL~m~e~e~A---L~kAi~SgD~DLi~~vLl~L~~~l~~ 71 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL--------EPRASKQVPLLLKMGEDELA---LNKAIESGDTDLIYLVLLHLKRKLSL 71 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc--------CCChHHHHHHHhcCCchHHH---HHHHHHcCCccHHHHHHHHHHHhCCH
Q ss_pred -HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048 340 -NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL 418 (608)
Q Consensus 340 -~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~ 418 (608)
..+.-..+...|...|....+..++.. +..++..-..+...+.+.--...-. .+++.....+......|
T Consensus 72 s~f~~il~~~p~a~~l~~~~~r~~~~~~------L~~~y~q~d~~~~~a~~~l~~~~~~----~~~~~~~~~L~~a~~~y 141 (319)
T PF04840_consen 72 SQFFKILNQNPVASNLYKKYCREQDREL------LKDFYYQEDRFQELANLHLQEALSQ----KDVEEKISFLKQAQKLY 141 (319)
T ss_pred HHHHHHHHhCcchHHHHHHHHHhccHHH------HHHHHHhcchHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHH
Q ss_pred HHcCC-------hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 419 LKLHK-------HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 419 ~~~g~-------~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
...++ .++.+..++---++.......+. ...+...-.-+...|+...|..+-.+. .-|+-...|..
T Consensus 142 ~~~k~~~f~~~~~e~q~~Ll~~Q~~Le~~~~~~f~-----~~Sl~~Ti~~li~~~~~k~A~kl~k~F--kv~dkrfw~lk 214 (319)
T PF04840_consen 142 SKSKNDAFEAKLIEEQIKLLEYQKELEEKYNTNFV-----GLSLNDTIRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLK 214 (319)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHhccchh-----cCCHHHHHHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 492 MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
+ .++...++|++-..+... ...|..|.-...++...|+..+|..+..+ ... -.
T Consensus 215 i-------------~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI~k-------~~~--~~ 267 (319)
T PF04840_consen 215 I-------------KALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYIPK-------IPD--EE 267 (319)
T ss_pred H-------------HHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHHHh-------CCh--HH
Q ss_pred HHHHHHHcCCHHHHHHH
Q 040048 572 RADCFAKIEKWEASMQD 588 (608)
Q Consensus 572 la~~~~~~g~~~~A~~~ 588 (608)
....|.+.|++.+|.+.
T Consensus 268 rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 268 RVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHCCCHHHHHHH
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.47 E-value=55 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al 559 (608)
..|.-+-..|++++|+.+|.+++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444455555555444443
No 485
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.02 E-value=47 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAIS 292 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~ 292 (608)
+...|..+-..|+|++|+.+|..+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444455555555555555443
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.84 E-value=6.4e+02 Score=30.18 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------C--hhHHHHHHHHHHHcC
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPN---------------------------K--ASYRSNKTAALIALG 312 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---------------------------~--~~~~~~la~~~~~~g 312 (608)
.++-.-+.+|.+|...|+.-+|+.+|.+|..-... . ..+|...-.++..-+
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 34556788999999999999999999999753211 1 122333345556677
Q ss_pred CHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc
Q 040048 313 RLLEAVFECREAIRIEPHY----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD 388 (608)
Q Consensus 313 ~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (608)
-.+.+++...+||+.-|++ +..+..+-.-+..+|.+-+|...+-+ +|+...+ ...+..+..+....|.
T Consensus 998 ~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-----npdserr---rdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-----NPDSERR---RDCLRQLVIVLFECGE 1069 (1480)
T ss_pred cHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-----CCcHHHH---HHHHHHHHHHHHhccc
Confidence 7888888888888754433 33444555566677888888765532 2332111 2222333333333333
Q ss_pred HHH------------HHH-HHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHH
Q 040048 389 WNT------------LIQ-ETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE 429 (608)
Q Consensus 389 ~~~------------A~~-~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 429 (608)
++. ... ..+.+-...+-.....|..+--.+...++|.+|-.
T Consensus 1070 l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1070 LEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred hHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 332 222 23333334444445566666666666777766543
No 487
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.97 E-value=47 Score=25.41 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
..++|+.++.+|++.| ..|++++|+.+|..+++.
T Consensus 2 ~l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 2 SLEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQY 35 (75)
T ss_pred cHHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHH
No 488
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.27 E-value=51 Score=25.36 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAI 291 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al 291 (608)
...|..+-..|+|++|+.+|.++|
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444445555555555554443
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.24 E-value=1.2e+02 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 566 SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+-.+-.||.+|...|+-+.|..-|+.--.+.|+.......|
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 34555666666666666666666666666666665554444
No 490
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=41.21 E-value=3.7e+02 Score=32.84 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISID 294 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~ 294 (608)
........+|..++..|.+.+|+..|.+|+..-
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~ 272 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEIL 272 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999764
No 491
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=41.09 E-value=2.8e+02 Score=27.33 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--hHH-HHHHHHHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHhhcCCCCC
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNN--KEV-NMVMRKAKGVAAARSNGNALFKQAK----FSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~-~~~l~~~~~~~~~~~lg~~~~~~g~----~~eA~~~~~~al~~~p~~ 531 (608)
...++..++|++=...+.+..+...+. .+. +... ..+...+.... ...-...++.-++..|++
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~----------~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~S 76 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRA----------WMSSTLFDMDSVVDAWQARLAVLKAWVAACPKS 76 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHH----------HhhccccCcchhhhHHHhHHHHHHHHHHHCCCC
Confidence 345677889999888888877543321 111 1100 11111122211 124566777778889999
Q ss_pred HHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 532 SVLLCNRAACRSKLG----------------------QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 532 ~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
..++..+|.++.... -.+.|...+.+|++++|....++..+-.+-...|.
T Consensus 77 y~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 77 YHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 888888888775432 15678888888889999888887777666555554
No 492
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.53 E-value=3e+02 Score=25.35 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 549 (608)
....++.+.|.+++|.+.+++... +|+.......|..+-.+...+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 345678999999999999999998 7777666666665554444433
No 493
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.50 E-value=1.3e+02 Score=24.83 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISI 293 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~ 293 (608)
....|...+..||+..|.+.+.++-+.
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334444445555555555555555444
No 494
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.43 E-value=2.5e+02 Score=24.41 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=73.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------HHHHHHHHHH--HHcCCHHHHHHHHHHhhcCCCC
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV------AAARSNGNAL--FKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------~~~~~lg~~~--~~~g~~~eA~~~~~~al~~~p~ 530 (608)
|.-....|..++..+...+...-.+-...-|....-+..+ +.+-.+|..+ ..-|+...-+.+|-..-.
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc----
Confidence 4445667899999999999988776655555544332221 1222222221 112333444444433211
Q ss_pred CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 531 NSVLLCNRA-ACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 531 ~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
..+ |..+| .++...|+-+.-.+.+....+.....+..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 85 ~se-~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 LSE-YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --H-HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 112 23333 34556777777777777776655667999999999999999999999999998764
No 495
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.42 E-value=65 Score=24.77 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
..+...|.-+-..|+|++|+.+|..+++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666777777777777777765
No 496
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.30 E-value=40 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 548 FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 548 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+.+|+..+.+|++.+.. |+|++|..+|..+++.
T Consensus 3 l~~A~~l~~~Ave~d~~---------------~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 3 LEQAAELIRLALEKEEE---------------GDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHH
No 497
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=39.32 E-value=2.7e+02 Score=30.22 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--
Q 040048 453 NLLVVRAQVNLACG---RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-- 527 (608)
Q Consensus 453 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-- 527 (608)
.+...+-++++..| +|.-|+-.+-.+.++.|..... .++.+|.+++..
T Consensus 258 ~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~---------------------------~~~~l~~~AI~sa~ 310 (618)
T PF05053_consen 258 QLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRP---------------------------TPLELFNEAISSAR 310 (618)
T ss_dssp HHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS-----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCC---------------------------CHHHHHHHHHHHHH
Confidence 33444555555544 4667777777776666653322 233344444432
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 528 ---DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 528 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
+..+..-|..+|-.|++.++|.+|+..+-.|-..
T Consensus 311 ~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 311 TYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567788899999999999999888877553
No 498
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=39.26 E-value=2.4e+02 Score=24.01 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccc------cccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNFDVDETT------RFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
++..+-.++...|+.+.-..++++...++.+... ..........++..+...|...+++..|+.+.....+..+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 3444555666677777777777766665543311 1111224589999999999999999999999999988776
No 499
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=37.97 E-value=75 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHh
Q 040048 280 FAEALALYDAAIS 292 (608)
Q Consensus 280 ~~~Al~~~~~al~ 292 (608)
+++|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 500
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=37.82 E-value=5.6e+02 Score=27.78 Aligned_cols=159 Identities=15% Similarity=0.081 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhH
Q 040048 304 KTAALIALGRLLEAVFECREAI-RIEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCT 381 (608)
Q Consensus 304 la~~~~~~g~~~eA~~~~~~al-~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 381 (608)
-+.++++.|+...|...+.+.- .+.+.. .+.-...+.+.....++..|...+.+... .+.........|..++.
T Consensus 69 Aa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~----~~ls~~Qq~Ry~q~~a~ 144 (604)
T COG3107 69 AARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP----ADLSQNQQARYYQARAD 144 (604)
T ss_pred HHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch----hhcCHHHHHHHHHHHHH
Confidence 3466677777777777776655 333322 23344556666677777777777666332 22222233444444444
Q ss_pred HHHHhhcHHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHHcCChHHHHHHh-hcCCC--CCCcccccccCCCC
Q 040048 382 DAKRTRDWNTLIQETRAAIAGGAD--------SAPQIYALQAEALLKLHKHQEADETL-KNGPN--FDVDETTRFFGPIG 450 (608)
Q Consensus 382 ~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~la~~~~~~g~~~eA~~~l-~~al~--~~p~~~~~~~~~~~ 450 (608)
.....++--.+.+.. +..+|- +....|..+. ... ...+. .++.. .
T Consensus 145 a~ea~~~~~~a~rar---i~~~~lL~~k~~q~nid~tW~ll~-------------~~~~~~VIn~sa~e~~--------~ 200 (604)
T COG3107 145 ALEARGDSIDAARAR---IAQDPLLSGKAKQANIDKTWQLLS-------------EQANTGVINNSADEGN--------A 200 (604)
T ss_pred HHhcccchHHHHHHH---HHhhhhccchhHHHhHHHHHHHhh-------------hhccccceecccCCcc--------c
Confidence 444444433333222 222111 0111122211 000 01111 11110 0
Q ss_pred cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHH
Q 040048 451 NANLLVVRAQVNLACGRF-EDALAAIQKAAKQDSNNKEVNM 490 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~ 490 (608)
....|+.++.+|...+.- ..-..-++.-...+|.++.+..
T Consensus 201 ~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA~~ 241 (604)
T COG3107 201 ALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAAKM 241 (604)
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchhhh
Confidence 257789999999887753 3444444555566788776654
Done!