Query 040048
Match_columns 608
No_of_seqs 985 out of 3010
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-38 1.4E-42 328.8 29.3 359 202-607 18-380 (388)
2 3ieg_A DNAJ homolog subfamily 100.0 2.6E-35 8.7E-40 302.4 43.9 333 263-607 2-347 (359)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-36 2E-40 312.5 35.6 328 249-606 16-345 (388)
4 2y4t_A DNAJ homolog subfamily 100.0 3.1E-34 1.1E-38 305.0 41.5 336 260-607 22-370 (450)
5 2xpi_A Anaphase-promoting comp 100.0 3.3E-31 1.1E-35 292.3 36.9 316 262-607 198-591 (597)
6 2y4t_A DNAJ homolog subfamily 100.0 4.2E-32 1.4E-36 288.5 27.4 353 204-599 13-414 (450)
7 3fp2_A TPR repeat-containing p 100.0 1.9E-31 6.4E-36 290.1 31.7 320 263-607 24-469 (537)
8 3fp2_A TPR repeat-containing p 100.0 9.8E-32 3.4E-36 292.3 27.9 339 236-605 29-501 (537)
9 2gw1_A Mitochondrial precursor 100.0 9.2E-32 3.1E-36 290.5 27.2 346 249-606 23-489 (514)
10 3hym_B Cell division cycle pro 100.0 7E-31 2.4E-35 266.3 31.4 293 261-583 19-322 (330)
11 3ieg_A DNAJ homolog subfamily 100.0 7.2E-31 2.5E-35 269.1 30.7 317 249-581 20-355 (359)
12 2gw1_A Mitochondrial precursor 100.0 6.5E-31 2.2E-35 283.8 26.1 250 299-573 238-490 (514)
13 3hym_B Cell division cycle pro 100.0 3.2E-30 1.1E-34 261.4 27.2 291 287-607 11-311 (330)
14 2xpi_A Anaphase-promoting comp 100.0 1E-29 3.5E-34 280.3 33.5 325 252-606 137-556 (597)
15 1fch_A Peroxisomal targeting s 100.0 9.6E-31 3.3E-35 270.1 22.5 294 274-595 35-359 (368)
16 4g1t_A Interferon-induced prot 100.0 1.6E-30 5.5E-35 278.3 19.0 350 220-607 56-471 (472)
17 4eqf_A PEX5-related protein; a 100.0 1.1E-29 3.7E-34 262.5 22.4 281 262-594 63-355 (365)
18 1fch_A Peroxisomal targeting s 100.0 8.2E-29 2.8E-33 255.7 25.6 298 227-561 39-359 (368)
19 3cv0_A Peroxisome targeting si 100.0 3.9E-29 1.3E-33 253.1 21.4 286 263-599 20-319 (327)
20 4g1t_A Interferon-induced prot 100.0 1E-27 3.5E-32 256.5 31.6 312 262-603 49-409 (472)
21 2h6f_A Protein farnesyltransfe 100.0 2.1E-28 7.3E-33 253.4 22.2 248 260-606 93-359 (382)
22 4eqf_A PEX5-related protein; a 100.0 3.5E-28 1.2E-32 251.1 21.2 262 284-599 47-314 (365)
23 3u4t_A TPR repeat-containing p 100.0 2.2E-27 7.6E-32 234.1 22.7 248 263-575 2-264 (272)
24 3uq3_A Heat shock protein STI1 99.9 1.9E-26 6.5E-31 224.9 24.5 238 263-607 4-254 (258)
25 3sf4_A G-protein-signaling mod 99.9 1E-26 3.4E-31 242.8 19.3 312 261-583 6-364 (406)
26 3mkr_A Coatomer subunit epsilo 99.9 2.5E-25 8.5E-30 222.5 27.9 262 274-605 9-274 (291)
27 2pl2_A Hypothetical conserved 99.9 1E-25 3.5E-30 215.3 21.8 212 261-594 2-213 (217)
28 2pl2_A Hypothetical conserved 99.9 9.8E-26 3.3E-30 215.4 21.4 205 233-559 6-212 (217)
29 2xm6_A Protein corresponding t 99.9 2.9E-23 1E-27 223.5 40.0 311 250-606 97-446 (490)
30 3cv0_A Peroxisome targeting si 99.9 4.1E-25 1.4E-29 223.4 22.9 250 298-598 21-272 (327)
31 4a1s_A PINS, partner of inscut 99.9 2.5E-25 8.4E-30 233.4 21.1 292 263-600 47-377 (411)
32 3ro2_A PINS homolog, G-protein 99.9 6.2E-25 2.1E-29 222.2 21.9 290 264-599 5-336 (338)
33 2xm6_A Protein corresponding t 99.9 1.8E-22 6E-27 217.4 40.7 311 248-606 59-405 (490)
34 2h6f_A Protein farnesyltransfe 99.9 4.7E-25 1.6E-29 228.3 18.7 254 208-579 88-366 (382)
35 2ooe_A Cleavage stimulation fa 99.9 4.9E-22 1.7E-26 216.2 39.4 188 391-601 256-460 (530)
36 3sf4_A G-protein-signaling mod 99.9 2.5E-24 8.6E-29 224.6 20.0 292 296-598 7-339 (406)
37 2q7f_A YRRB protein; TPR, prot 99.9 8.1E-24 2.8E-28 204.5 21.0 221 262-580 21-241 (243)
38 1ouv_A Conserved hypothetical 99.9 2.3E-22 7.9E-27 198.7 31.1 233 261-603 3-259 (273)
39 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.7E-25 3E-29 215.6 13.0 248 273-589 14-269 (275)
40 2q7f_A YRRB protein; TPR, prot 99.9 3.9E-23 1.3E-27 199.7 22.8 212 298-607 23-234 (243)
41 2ho1_A Type 4 fimbrial biogene 99.9 9.4E-23 3.2E-27 198.5 25.2 209 264-568 37-245 (252)
42 3mkr_A Coatomer subunit epsilo 99.9 1.9E-22 6.6E-27 201.5 26.0 250 264-589 34-288 (291)
43 2vq2_A PILW, putative fimbrial 99.9 3.5E-22 1.2E-26 190.2 26.5 104 503-606 118-222 (225)
44 3vtx_A MAMA; tetratricopeptide 99.9 4E-23 1.4E-27 191.3 19.0 175 408-604 5-179 (184)
45 3u4t_A TPR repeat-containing p 99.9 4.9E-23 1.7E-27 202.9 19.3 241 249-546 20-269 (272)
46 4abn_A Tetratricopeptide repea 99.9 7.4E-23 2.5E-27 219.2 21.0 216 278-592 82-318 (474)
47 2ho1_A Type 4 fimbrial biogene 99.9 2.8E-21 9.6E-26 188.0 30.3 218 292-607 30-250 (252)
48 3uq3_A Heat shock protein STI1 99.9 1.5E-22 5.3E-27 197.0 18.9 208 262-575 36-256 (258)
49 2ond_A Cleavage stimulation fa 99.9 9.9E-22 3.4E-26 198.2 25.3 251 281-606 33-303 (308)
50 2vq2_A PILW, putative fimbrial 99.9 5E-21 1.7E-25 182.2 28.6 216 261-572 5-222 (225)
51 3vtx_A MAMA; tetratricopeptide 99.9 6E-22 2.1E-26 183.3 21.3 102 452-565 73-174 (184)
52 4i17_A Hypothetical protein; T 99.9 1.8E-20 6.1E-25 179.8 28.1 144 452-607 76-221 (228)
53 4i17_A Hypothetical protein; T 99.9 6.1E-21 2.1E-25 183.1 24.3 105 261-366 4-109 (228)
54 3ulq_A Response regulator aspa 99.9 1.6E-21 5.5E-26 202.8 19.9 315 264-597 12-370 (383)
55 2ooe_A Cleavage stimulation fa 99.9 8.1E-20 2.8E-24 198.6 34.0 317 259-606 8-431 (530)
56 2ond_A Cleavage stimulation fa 99.9 1.5E-20 5E-25 189.6 24.7 229 315-600 33-275 (308)
57 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.9E-21 1.7E-25 188.5 20.8 229 262-521 41-269 (275)
58 3e4b_A ALGK; tetratricopeptide 99.9 2.4E-20 8.3E-25 198.4 27.3 299 252-599 58-391 (452)
59 3e4b_A ALGK; tetratricopeptide 99.9 3E-22 1E-26 213.1 12.5 298 251-597 22-353 (452)
60 4abn_A Tetratricopeptide repea 99.9 2.7E-21 9.2E-26 207.0 18.2 199 261-558 99-318 (474)
61 3nf1_A KLC 1, kinesin light ch 99.9 5.6E-22 1.9E-26 198.8 12.2 251 261-598 24-310 (311)
62 4a1s_A PINS, partner of inscut 99.9 3.5E-21 1.2E-25 201.7 16.4 255 265-565 87-376 (411)
63 4gyw_A UDP-N-acetylglucosamine 99.8 8.4E-21 2.9E-25 211.4 18.2 170 408-599 9-178 (723)
64 4gyw_A UDP-N-acetylglucosamine 99.8 9.5E-21 3.2E-25 211.0 18.5 99 261-359 6-104 (723)
65 3ro2_A PINS homolog, G-protein 99.8 9.2E-21 3.1E-25 191.4 15.8 256 264-565 43-336 (338)
66 1hz4_A MALT regulatory protein 99.8 8.3E-19 2.8E-23 181.4 28.6 286 264-597 14-324 (373)
67 3ulq_A Response regulator aspa 99.8 4.2E-20 1.4E-24 192.1 19.0 250 266-563 105-370 (383)
68 1qqe_A Vesicular transport pro 99.8 3E-20 1E-24 185.8 16.4 228 279-606 32-280 (292)
69 1ouv_A Conserved hypothetical 99.8 2.2E-19 7.5E-24 177.3 22.0 213 248-568 22-258 (273)
70 3dra_A Protein farnesyltransfe 99.8 5.6E-19 1.9E-23 175.8 24.2 236 272-605 40-298 (306)
71 3q15_A PSP28, response regulat 99.8 2.2E-19 7.6E-24 186.4 21.9 307 272-596 20-366 (378)
72 3as5_A MAMA; tetratricopeptide 99.8 8.8E-19 3E-23 160.8 23.3 174 407-602 7-180 (186)
73 3qky_A Outer membrane assembly 99.8 2.4E-19 8.3E-24 175.8 19.9 212 292-586 9-252 (261)
74 1hz4_A MALT regulatory protein 99.8 2.8E-19 9.5E-24 185.0 21.2 304 246-600 28-354 (373)
75 2pzi_A Probable serine/threoni 99.8 1.4E-19 4.8E-24 202.3 20.0 185 261-547 391-583 (681)
76 3qky_A Outer membrane assembly 99.8 6.4E-19 2.2E-23 172.8 20.8 215 260-552 11-252 (261)
77 2pzi_A Probable serine/threoni 99.8 5.9E-20 2E-24 205.3 14.3 187 293-581 389-583 (681)
78 3q15_A PSP28, response regulat 99.8 1E-18 3.5E-23 181.3 21.3 241 266-562 103-366 (378)
79 1xi4_A Clathrin heavy chain; a 99.8 1.3E-17 4.5E-22 189.0 30.8 273 262-593 1103-1382(1630)
80 2yhc_A BAMD, UPF0169 lipoprote 99.8 8.4E-18 2.9E-22 161.1 22.5 207 263-600 3-218 (225)
81 1xi4_A Clathrin heavy chain; a 99.8 7.1E-17 2.4E-21 183.1 31.6 266 270-606 1055-1320(1630)
82 4ga2_A E3 SUMO-protein ligase 99.8 4E-19 1.4E-23 158.8 10.6 146 414-581 3-149 (150)
83 3urz_A Uncharacterized protein 99.8 3.9E-18 1.3E-22 161.4 17.8 169 263-440 3-189 (208)
84 4ga2_A E3 SUMO-protein ligase 99.8 2.3E-19 7.7E-24 160.4 8.7 137 458-606 3-140 (150)
85 3edt_B KLC 2, kinesin light ch 99.8 7.7E-19 2.6E-23 172.9 13.1 234 276-596 13-282 (283)
86 3urz_A Uncharacterized protein 99.8 2E-18 7E-23 163.3 14.9 167 411-600 7-191 (208)
87 1qqe_A Vesicular transport pro 99.8 2.5E-18 8.5E-23 171.8 16.1 219 266-490 39-278 (292)
88 3dss_A Geranylgeranyl transfer 99.8 1E-16 3.5E-21 160.3 26.8 235 274-606 39-315 (331)
89 4gco_A Protein STI-1; structur 99.8 3.5E-18 1.2E-22 147.7 13.4 108 500-607 15-122 (126)
90 1b89_A Protein (clathrin heavy 99.8 1.4E-19 4.8E-24 185.7 5.2 273 262-593 30-309 (449)
91 3as5_A MAMA; tetratricopeptide 99.8 1.7E-17 5.8E-22 152.2 18.5 102 452-565 76-177 (186)
92 3dra_A Protein farnesyltransfe 99.7 1.6E-16 5.5E-21 158.1 23.7 228 250-575 51-302 (306)
93 3edt_B KLC 2, kinesin light ch 99.7 3.3E-17 1.1E-21 161.1 16.6 211 262-562 41-282 (283)
94 4gco_A Protein STI-1; structur 99.7 7E-17 2.4E-21 139.5 15.6 113 452-576 13-125 (126)
95 3q7a_A Farnesyltransferase alp 99.7 8.3E-16 2.8E-20 154.3 24.6 242 265-604 55-341 (349)
96 3nf1_A KLC 1, kinesin light ch 99.7 5.2E-18 1.8E-22 169.7 8.1 219 261-564 66-310 (311)
97 3gyz_A Chaperone protein IPGC; 99.7 9.2E-18 3.1E-22 149.6 8.8 118 471-600 21-138 (151)
98 2ifu_A Gamma-SNAP; membrane fu 99.7 6.8E-17 2.3E-21 162.6 16.3 256 276-603 3-271 (307)
99 1b89_A Protein (clathrin heavy 99.7 1.4E-17 4.8E-22 171.0 10.5 277 261-593 58-353 (449)
100 2r5s_A Uncharacterized protein 99.7 7.7E-17 2.6E-21 147.9 14.1 163 409-594 7-172 (176)
101 4f3v_A ESX-1 secretion system 99.7 4.7E-16 1.6E-20 151.2 19.5 219 373-607 7-248 (282)
102 2vsy_A XCC0866; transferase, g 99.7 2.5E-16 8.6E-21 172.6 19.4 163 421-605 2-167 (568)
103 2r5s_A Uncharacterized protein 99.7 2.2E-16 7.4E-21 144.9 15.2 167 295-560 3-172 (176)
104 3qou_A Protein YBBN; thioredox 99.7 2.8E-16 9.7E-21 156.4 15.1 166 407-594 116-283 (287)
105 3qou_A Protein YBBN; thioredox 99.7 1.1E-15 3.8E-20 152.1 19.4 168 295-560 114-283 (287)
106 3gyz_A Chaperone protein IPGC; 99.7 2.6E-16 8.8E-21 140.2 13.0 119 426-566 20-138 (151)
107 2ifu_A Gamma-SNAP; membrane fu 99.7 4.4E-15 1.5E-19 149.2 21.6 214 277-553 29-253 (307)
108 4f3v_A ESX-1 secretion system 99.7 4.9E-15 1.7E-19 144.1 20.7 230 301-574 10-249 (282)
109 1p5q_A FKBP52, FK506-binding p 99.7 2.5E-17 8.7E-22 167.9 4.2 196 387-595 79-294 (336)
110 2fo7_A Synthetic consensus TPR 99.7 6.7E-15 2.3E-19 126.9 18.7 135 453-599 2-136 (136)
111 2vsy_A XCC0866; transferase, g 99.7 1.6E-15 5.4E-20 166.2 18.3 164 278-539 3-169 (568)
112 2vgx_A Chaperone SYCD; alterna 99.7 2.6E-16 8.8E-21 140.1 9.6 119 472-602 7-125 (148)
113 2c2l_A CHIP, carboxy terminus 99.7 6.3E-16 2.1E-20 153.4 13.4 105 261-366 1-105 (281)
114 3dss_A Geranylgeranyl transfer 99.6 4.2E-14 1.4E-18 141.4 26.0 243 251-576 49-319 (331)
115 2c2l_A CHIP, carboxy terminus 99.6 2.1E-15 7.3E-20 149.5 13.7 71 295-366 1-71 (281)
116 4gcn_A Protein STI-1; structur 99.6 3.8E-15 1.3E-19 128.7 13.6 110 497-607 7-123 (127)
117 3upv_A Heat shock protein STI1 99.6 7.8E-15 2.7E-19 126.2 15.1 110 498-607 4-119 (126)
118 3rjv_A Putative SEL1 repeat pr 99.6 1.5E-14 5.3E-19 136.9 17.9 176 391-597 4-199 (212)
119 2xcb_A PCRH, regulatory protei 99.6 1.2E-15 4.2E-20 134.6 9.4 120 473-604 5-124 (142)
120 2hr2_A Hypothetical protein; a 99.6 1.5E-15 5.1E-20 134.0 9.5 110 496-605 9-141 (159)
121 3rjv_A Putative SEL1 repeat pr 99.6 9.1E-14 3.1E-18 131.6 22.6 106 250-360 4-117 (212)
122 2xcb_A PCRH, regulatory protei 99.6 8E-15 2.7E-19 129.3 13.2 129 429-579 5-133 (142)
123 2vgx_A Chaperone SYCD; alterna 99.6 2.4E-15 8.4E-20 133.7 9.8 120 429-570 8-127 (148)
124 2e2e_A Formate-dependent nitri 99.6 5.3E-15 1.8E-19 135.5 11.7 131 462-604 20-153 (177)
125 1a17_A Serine/threonine protei 99.6 6.9E-14 2.4E-18 125.8 18.4 133 452-596 13-147 (166)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.1E-14 1.1E-18 134.3 16.8 134 452-600 6-155 (213)
127 4e6h_A MRNA 3'-END-processing 99.6 7.9E-13 2.7E-17 145.6 29.7 329 259-597 61-535 (679)
128 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.7E-14 2E-18 134.2 17.5 142 452-602 4-183 (225)
129 3q7a_A Farnesyltransferase alp 99.6 4.2E-13 1.4E-17 134.7 23.2 235 251-575 73-346 (349)
130 3rkv_A Putative peptidylprolyl 99.6 2.5E-14 8.7E-19 129.0 13.0 111 496-606 9-138 (162)
131 3mv2_B Coatomer subunit epsilo 99.6 2.1E-13 7.2E-18 134.2 20.5 174 409-605 101-292 (310)
132 1p5q_A FKBP52, FK506-binding p 99.6 2.1E-14 7.3E-19 146.2 13.9 180 202-400 84-292 (336)
133 4e6h_A MRNA 3'-END-processing 99.6 3.7E-12 1.2E-16 140.3 32.2 340 252-603 86-578 (679)
134 3sz7_A HSC70 cochaperone (SGT) 99.6 4.3E-14 1.5E-18 127.8 14.1 105 498-602 11-115 (164)
135 1hxi_A PEX5, peroxisome target 99.6 2.7E-14 9.1E-19 122.2 11.9 100 502-601 21-120 (121)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.7E-13 9.1E-18 127.8 20.0 134 409-567 7-156 (213)
137 3upv_A Heat shock protein STI1 99.5 1.1E-13 3.6E-18 119.0 15.6 116 452-579 4-125 (126)
138 1dce_A Protein (RAB geranylger 99.5 1.2E-14 4E-19 158.0 11.0 135 452-598 107-270 (567)
139 2fbn_A 70 kDa peptidylprolyl i 99.5 1.4E-14 4.8E-19 135.4 10.0 172 414-595 10-186 (198)
140 2fo7_A Synthetic consensus TPR 99.5 1.9E-13 6.5E-18 117.6 16.4 133 265-404 2-134 (136)
141 3u3w_A Transcriptional activat 99.5 9.4E-14 3.2E-18 138.4 15.7 174 413-596 80-267 (293)
142 2hr2_A Hypothetical protein; a 99.5 3.5E-14 1.2E-18 125.2 10.7 103 263-366 10-135 (159)
143 2qfc_A PLCR protein; TPR, HTH, 99.5 1.7E-13 5.8E-18 136.6 17.0 176 411-596 78-267 (293)
144 2vyi_A SGTA protein; chaperone 99.5 3.1E-13 1.1E-17 115.8 15.9 119 452-582 12-130 (131)
145 1a17_A Serine/threonine protei 99.5 4E-13 1.4E-17 120.7 17.3 134 263-401 12-145 (166)
146 4gcn_A Protein STI-1; structur 99.5 5.8E-14 2E-18 121.2 10.9 101 264-365 8-115 (127)
147 2lni_A Stress-induced-phosphop 99.5 1.8E-13 6.2E-18 117.9 14.2 120 450-581 14-133 (133)
148 1dce_A Protein (RAB geranylger 99.5 3.1E-13 1.1E-17 146.8 19.3 162 423-606 44-232 (567)
149 3sz7_A HSC70 cochaperone (SGT) 99.5 1.8E-13 6.2E-18 123.6 14.6 115 451-577 10-124 (164)
150 2fbn_A 70 kDa peptidylprolyl i 99.5 4.1E-14 1.4E-18 132.3 9.9 140 456-607 8-163 (198)
151 3q49_B STIP1 homology and U bo 99.5 2.2E-13 7.5E-18 118.6 13.8 105 502-606 13-122 (137)
152 1elw_A TPR1-domain of HOP; HOP 99.5 5.5E-13 1.9E-17 112.0 15.5 110 498-607 4-113 (118)
153 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 3E-14 1E-18 151.4 8.9 158 420-587 246-406 (457)
154 1hxi_A PEX5, peroxisome target 99.5 1.9E-13 6.4E-18 116.9 12.1 100 266-366 19-118 (121)
155 2qfc_A PLCR protein; TPR, HTH, 99.5 1.8E-12 6E-17 129.2 20.3 177 373-561 75-266 (293)
156 2lni_A Stress-induced-phosphop 99.5 5E-13 1.7E-17 115.1 13.7 109 499-607 17-125 (133)
157 2e2e_A Formate-dependent nitri 99.5 9.4E-14 3.2E-18 127.0 9.0 131 418-570 20-153 (177)
158 1na0_A Designed protein CTPR3; 99.5 2.4E-12 8.2E-17 109.1 17.2 117 452-580 9-125 (125)
159 2dba_A Smooth muscle cell asso 99.5 1.6E-12 5.5E-17 114.3 16.1 106 502-607 32-140 (148)
160 1elw_A TPR1-domain of HOP; HOP 99.5 2.1E-12 7.2E-17 108.4 16.2 115 451-577 3-117 (118)
161 2xev_A YBGF; tetratricopeptide 99.5 1.2E-12 4.1E-17 112.5 14.9 106 501-606 5-116 (129)
162 2vyi_A SGTA protein; chaperone 99.4 2.5E-12 8.6E-17 110.0 16.4 109 498-606 12-120 (131)
163 3rkv_A Putative peptidylprolyl 99.4 5.2E-13 1.8E-17 120.3 12.6 130 452-583 11-149 (162)
164 1zu2_A Mitochondrial import re 99.4 2E-13 6.7E-18 120.1 9.3 99 509-607 13-132 (158)
165 3u3w_A Transcriptional activat 99.4 1.1E-12 3.9E-17 130.5 16.1 177 266-482 77-267 (293)
166 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 4.2E-13 1.4E-17 142.5 12.8 126 261-393 265-405 (457)
167 3q49_B STIP1 homology and U bo 99.4 1.4E-12 4.8E-17 113.4 13.8 119 451-581 8-131 (137)
168 3mv2_B Coatomer subunit epsilo 99.4 3.6E-12 1.2E-16 125.5 17.5 260 262-569 12-290 (310)
169 1na0_A Designed protein CTPR3; 99.4 4.6E-12 1.6E-16 107.3 16.1 108 500-607 11-118 (125)
170 2kck_A TPR repeat; tetratricop 99.4 9.1E-13 3.1E-17 109.6 10.7 98 503-600 11-111 (112)
171 3gw4_A Uncharacterized protein 99.4 1.7E-12 5.7E-17 121.0 13.1 163 419-597 3-178 (203)
172 1wao_1 Serine/threonine protei 99.4 8.6E-14 3E-18 148.5 4.5 136 452-599 6-154 (477)
173 1wao_1 Serine/threonine protei 99.4 2.9E-13 1E-17 144.4 8.6 139 264-444 6-157 (477)
174 2if4_A ATFKBP42; FKBP-like, al 99.4 2.7E-13 9.2E-18 138.1 7.9 151 452-602 179-335 (338)
175 2dba_A Smooth muscle cell asso 99.4 5.4E-12 1.8E-16 110.9 15.1 116 451-578 27-145 (148)
176 1elr_A TPR2A-domain of HOP; HO 99.4 4.3E-12 1.5E-16 108.6 14.0 108 498-606 4-118 (131)
177 2xev_A YBGF; tetratricopeptide 99.4 6.8E-12 2.3E-16 107.7 15.2 117 453-581 3-125 (129)
178 2uy1_A Cleavage stimulation fa 99.4 8.1E-10 2.8E-14 118.0 34.4 315 264-592 14-380 (493)
179 3gw4_A Uncharacterized protein 99.4 1.3E-12 4.4E-17 121.8 11.0 173 274-486 2-181 (203)
180 3k9i_A BH0479 protein; putativ 99.4 6.4E-13 2.2E-17 112.7 8.0 95 510-604 2-99 (117)
181 4b4t_Q 26S proteasome regulato 99.4 1.1E-12 3.9E-17 137.8 11.7 219 264-527 4-245 (434)
182 2kck_A TPR repeat; tetratricop 99.4 1.5E-12 5.2E-17 108.2 9.6 106 260-366 2-110 (112)
183 3ro3_A PINS homolog, G-protein 99.4 4.1E-12 1.4E-16 113.0 13.0 142 452-599 9-162 (164)
184 1ihg_A Cyclophilin 40; ppiase 99.4 6.9E-12 2.3E-16 129.1 15.2 137 452-588 223-363 (370)
185 1elr_A TPR2A-domain of HOP; HO 99.3 9.8E-12 3.3E-16 106.4 13.1 117 452-581 4-127 (131)
186 2if4_A ATFKBP42; FKBP-like, al 99.3 1.7E-12 5.8E-17 132.2 9.0 103 263-366 178-297 (338)
187 1ihg_A Cyclophilin 40; ppiase 99.3 8.6E-12 2.9E-16 128.4 14.4 107 501-607 226-348 (370)
188 1zu2_A Mitochondrial import re 99.3 1.6E-12 5.4E-17 114.4 7.2 91 275-366 13-124 (158)
189 3ro3_A PINS homolog, G-protein 99.3 1.3E-11 4.4E-16 109.7 11.1 137 264-401 9-157 (164)
190 4b4t_Q 26S proteasome regulato 99.3 1.3E-11 4.3E-16 129.8 12.5 211 375-595 6-245 (434)
191 3k9i_A BH0479 protein; putativ 99.3 4E-12 1.4E-16 107.6 6.5 100 464-575 2-104 (117)
192 2l6j_A TPR repeat-containing p 99.2 7.2E-12 2.5E-16 104.3 5.4 96 263-358 3-104 (111)
193 2l6j_A TPR repeat-containing p 99.2 9.2E-12 3.1E-16 103.7 4.5 95 498-592 4-104 (111)
194 2kat_A Uncharacterized protein 99.2 2.9E-10 9.9E-15 95.6 12.2 85 515-599 2-86 (115)
195 1na3_A Designed protein CTPR2; 99.1 3.3E-10 1.1E-14 90.4 11.5 85 262-346 7-91 (91)
196 1na3_A Designed protein CTPR2; 99.1 1E-09 3.4E-14 87.5 11.9 81 500-580 11-91 (91)
197 2uy1_A Cleavage stimulation fa 99.1 2.8E-08 9.5E-13 106.1 24.9 338 232-594 14-412 (493)
198 2kat_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 91.7 11.5 99 470-580 3-103 (115)
199 2kc7_A BFR218_protein; tetratr 99.0 2.9E-10 1E-14 92.6 6.8 91 502-600 4-95 (99)
200 3ma5_A Tetratricopeptide repea 99.0 5.1E-10 1.7E-14 91.7 7.1 72 527-598 2-73 (100)
201 3n71_A Histone lysine methyltr 99.0 2E-09 6.9E-14 114.1 13.1 139 455-602 312-471 (490)
202 3ma5_A Tetratricopeptide repea 99.0 2.9E-09 9.9E-14 87.1 10.2 86 260-345 3-90 (100)
203 2kc7_A BFR218_protein; tetratr 99.0 9.4E-10 3.2E-14 89.5 7.2 90 267-365 3-93 (99)
204 1klx_A Cysteine rich protein B 98.9 4.3E-08 1.5E-12 85.3 14.9 119 466-606 9-135 (138)
205 3ly7_A Transcriptional activat 98.8 7.5E-08 2.6E-12 96.3 17.0 137 452-601 196-345 (372)
206 3n71_A Histone lysine methyltr 98.8 7.9E-09 2.7E-13 109.5 9.9 93 268-360 313-421 (490)
207 1klx_A Cysteine rich protein B 98.7 7.3E-08 2.5E-12 83.9 11.3 120 423-574 10-137 (138)
208 3u64_A Protein TP_0956; tetrat 98.6 4.8E-07 1.6E-11 86.8 15.0 101 452-564 152-272 (301)
209 3bee_A Putative YFRE protein; 98.6 1.6E-07 5.5E-12 75.3 10.1 72 528-599 2-76 (93)
210 1pc2_A Mitochondria fission pr 98.6 1.6E-07 5.6E-12 81.4 10.7 93 513-605 13-110 (152)
211 3ly7_A Transcriptional activat 98.6 1.5E-07 5.1E-12 94.2 10.4 136 263-406 195-343 (372)
212 3bee_A Putative YFRE protein; 98.6 2.7E-07 9.4E-12 73.9 9.8 71 261-331 3-76 (93)
213 3u64_A Protein TP_0956; tetrat 98.6 3.9E-07 1.3E-11 87.5 12.0 86 513-598 178-272 (301)
214 2v5f_A Prolyl 4-hydroxylase su 98.6 6.9E-07 2.4E-11 73.4 11.7 78 262-339 3-87 (104)
215 2v5f_A Prolyl 4-hydroxylase su 98.5 1E-06 3.4E-11 72.4 11.0 75 499-573 6-87 (104)
216 3qww_A SET and MYND domain-con 98.5 4.9E-07 1.7E-11 94.2 11.1 99 506-604 306-425 (433)
217 1pc2_A Mitochondria fission pr 98.4 2.2E-06 7.4E-11 74.4 11.4 97 468-576 14-115 (152)
218 3qwp_A SET and MYND domain-con 98.4 1.4E-06 4.7E-11 90.9 12.2 103 503-605 292-415 (429)
219 3qww_A SET and MYND domain-con 98.4 2.4E-06 8.4E-11 88.9 14.0 98 463-569 309-424 (433)
220 3qwp_A SET and MYND domain-con 98.4 1.7E-06 5.7E-11 90.3 12.1 112 458-578 293-425 (429)
221 4g26_A Pentatricopeptide repea 98.1 0.00018 6.1E-09 76.6 20.4 162 410-595 28-204 (501)
222 4g26_A Pentatricopeptide repea 98.1 0.00017 5.9E-09 76.7 19.3 166 263-436 24-203 (501)
223 1nzn_A CGI-135 protein, fissio 98.0 4.1E-05 1.4E-09 63.8 9.6 95 511-605 14-113 (126)
224 1nzn_A CGI-135 protein, fissio 97.8 0.0003 1E-08 58.6 12.2 98 466-575 15-117 (126)
225 4h7y_A Dual specificity protei 97.8 0.00025 8.6E-09 60.3 11.6 112 480-604 7-132 (161)
226 3ffl_A Anaphase-promoting comp 97.5 0.00031 1.1E-08 61.2 8.4 135 300-462 22-165 (167)
227 4h7y_A Dual specificity protei 97.5 0.0014 4.9E-08 55.8 11.6 107 258-366 7-127 (161)
228 3ffl_A Anaphase-promoting comp 97.4 0.0011 3.6E-08 57.8 10.6 97 262-358 18-148 (167)
229 1y8m_A FIS1; mitochondria, unk 97.2 0.0052 1.8E-07 52.0 11.7 76 529-604 36-115 (144)
230 3o48_A Mitochondria fission 1 97.1 0.0036 1.2E-07 52.2 10.5 75 530-604 38-116 (134)
231 3o48_A Mitochondria fission 1 97.0 0.0065 2.2E-07 50.7 10.8 80 262-341 38-121 (134)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.011 3.8E-07 49.9 12.0 80 261-340 36-119 (144)
233 4gns_B Protein CSD3, chitin bi 96.8 0.0074 2.5E-07 66.4 12.4 119 464-592 260-397 (754)
234 3kae_A CDC27, possible protein 96.7 0.063 2.2E-06 46.4 14.6 182 253-440 22-240 (242)
235 3txn_A 26S proteasome regulato 96.6 0.075 2.6E-06 53.8 17.1 177 409-596 20-211 (394)
236 1qsa_A Protein (soluble lytic 96.5 0.5 1.7E-05 51.0 24.4 127 459-594 221-347 (618)
237 3mkq_A Coatomer beta'-subunit; 96.5 0.15 5.1E-06 57.2 21.4 70 272-357 607-677 (814)
238 3txn_A 26S proteasome regulato 96.5 0.093 3.2E-06 53.2 17.2 171 264-435 19-208 (394)
239 3kae_A CDC27, possible protein 96.0 0.71 2.4E-05 40.0 22.1 183 385-598 14-240 (242)
240 3mkq_B Coatomer subunit alpha; 95.9 0.71 2.4E-05 40.7 17.7 22 415-436 96-117 (177)
241 3mkq_A Coatomer beta'-subunit; 95.9 0.13 4.3E-06 57.8 16.6 77 266-358 631-707 (814)
242 2ff4_A Probable regulatory pro 95.8 0.16 5.6E-06 51.7 15.0 92 503-594 120-233 (388)
243 4gns_B Protein CSD3, chitin bi 95.6 0.1 3.4E-06 57.5 13.4 125 421-558 261-397 (754)
244 2ff4_A Probable regulatory pro 95.5 0.15 5E-06 52.0 13.6 93 267-359 118-232 (388)
245 3mkq_B Coatomer subunit alpha; 95.4 0.35 1.2E-05 42.7 13.8 109 262-398 6-114 (177)
246 4b4t_P 26S proteasome regulato 95.3 0.54 1.8E-05 48.7 17.4 172 409-597 138-326 (445)
247 4b4t_P 26S proteasome regulato 94.6 0.48 1.6E-05 49.1 14.4 178 375-561 58-247 (445)
248 1ya0_A SMG-7 transcript varian 94.2 0.25 8.5E-06 51.8 11.3 79 266-344 154-232 (497)
249 3spa_A Mtrpol, DNA-directed RN 94.2 0.53 1.8E-05 53.1 14.2 97 500-596 129-231 (1134)
250 1zbp_A Hypothetical protein VP 93.9 0.65 2.2E-05 43.8 12.2 94 506-599 5-133 (273)
251 1ya0_A SMG-7 transcript varian 93.9 0.23 7.8E-06 52.1 10.2 77 502-578 156-232 (497)
252 1qsa_A Protein (soluble lytic 93.7 8.8 0.0003 41.2 30.4 183 383-590 224-437 (618)
253 1zbp_A Hypothetical protein VP 93.7 0.5 1.7E-05 44.6 11.1 63 272-334 5-67 (273)
254 4b4t_R RPN7, 26S proteasome re 92.4 0.41 1.4E-05 49.4 9.4 97 264-360 131-236 (429)
255 3spa_A Mtrpol, DNA-directed RN 92.2 1.6 5.4E-05 49.4 14.0 101 264-366 127-236 (1134)
256 4fhn_B Nucleoporin NUP120; pro 91.8 17 0.00058 42.4 23.2 144 303-476 817-962 (1139)
257 4b4t_R RPN7, 26S proteasome re 91.4 0.43 1.5E-05 49.2 8.2 105 297-403 130-238 (429)
258 4b4t_S RPN3, 26S proteasome re 91.3 0.71 2.4E-05 48.0 9.6 203 267-486 139-378 (523)
259 2wpv_A GET4, UPF0363 protein Y 90.3 14 0.00047 35.8 21.1 80 516-595 118-217 (312)
260 4b4t_S RPN3, 26S proteasome re 89.6 1.7 5.9E-05 45.2 10.7 146 411-565 139-303 (523)
261 4fhn_B Nucleoporin NUP120; pro 88.6 2.6 8.9E-05 49.3 12.7 118 458-591 818-963 (1139)
262 3lpz_A GET4 (YOR164C homolog); 86.2 26 0.0009 34.2 28.5 138 404-580 132-296 (336)
263 3lvg_A Clathrin heavy chain 1; 84.3 0.0091 3.1E-07 61.1 -9.6 350 202-588 73-476 (624)
264 3lvg_A Clathrin heavy chain 1; 81.9 0.00018 6E-09 73.4 -23.0 266 262-587 52-325 (624)
265 4ady_A RPN2, 26S proteasome re 79.4 88 0.003 35.2 25.2 45 300-346 232-276 (963)
266 3lpz_A GET4 (YOR164C homolog); 79.2 49 0.0017 32.2 24.4 66 529-594 133-215 (336)
267 4ady_A RPN2, 26S proteasome re 78.7 11 0.00038 42.3 11.4 259 309-593 385-656 (963)
268 4gq2_M Nucleoporin NUP120; bet 74.0 20 0.00069 40.8 12.3 94 269-366 815-931 (950)
269 4gq2_M Nucleoporin NUP120; bet 68.7 1.6E+02 0.0055 33.3 18.8 97 303-403 815-927 (950)
270 3re2_A Predicted protein; meni 64.4 61 0.0021 31.6 11.2 29 565-593 295-323 (472)
271 1wy6_A Hypothetical protein ST 63.0 34 0.0012 28.6 8.0 56 506-561 99-154 (172)
272 3ax2_A Mitochondrial import re 62.4 18 0.00061 26.5 5.6 31 572-602 23-53 (73)
273 3u84_A Menin; MLL, JUND, ledgf 62.2 65 0.0022 32.1 11.1 57 551-607 298-365 (550)
274 1wy6_A Hypothetical protein ST 62.1 69 0.0024 26.8 14.4 133 459-595 14-154 (172)
275 2qx5_A Nucleoporin NIC96; mRNA 61.5 1.2E+02 0.004 32.7 14.4 27 410-436 445-471 (661)
276 3ax2_A Mitochondrial import re 61.0 19 0.00066 26.3 5.6 32 268-299 21-52 (73)
277 2qx5_A Nucleoporin NIC96; mRNA 57.7 1E+02 0.0035 33.2 13.0 173 284-478 281-469 (661)
278 3ubw_A 14-3-3E, 14-3-3 protein 54.8 1.4E+02 0.0046 27.9 11.7 46 375-420 33-78 (261)
279 3uzd_A 14-3-3 protein gamma; s 54.0 1.4E+02 0.0047 27.6 12.0 55 376-430 7-62 (248)
280 2crb_A Nuclear receptor bindin 51.2 25 0.00087 26.8 4.9 28 532-559 15-42 (97)
281 3t5v_B Nuclear mRNA export pro 51.1 48 0.0016 34.0 8.8 99 467-565 141-254 (455)
282 2crb_A Nuclear receptor bindin 51.0 23 0.00079 27.0 4.6 28 498-525 15-42 (97)
283 1o9d_A 14-3-3-like protein C; 49.8 1.6E+02 0.0056 27.3 12.0 46 375-420 10-57 (260)
284 2wvi_A Mitotic checkpoint seri 49.6 47 0.0016 28.6 7.1 46 551-596 79-126 (164)
285 2br9_A 14-3-3E, 14-3-3 protein 49.5 1.6E+02 0.0053 27.0 11.8 45 376-420 8-52 (234)
286 3t5x_A PCI domain-containing p 49.1 35 0.0012 30.6 6.7 35 264-298 14-48 (203)
287 2ijq_A Hypothetical protein; s 47.7 1E+02 0.0034 26.4 8.9 62 265-326 33-103 (161)
288 3iqu_A 14-3-3 protein sigma; s 46.0 1.8E+02 0.0061 26.6 14.6 56 375-430 10-66 (236)
289 4a1g_A Mitotic checkpoint seri 45.4 40 0.0014 28.6 6.0 50 549-598 82-133 (152)
290 3esl_A Checkpoint serine/threo 44.9 1.2E+02 0.0041 27.0 9.2 52 512-563 93-146 (202)
291 4gq4_A Menin; tumor suppressor 44.4 1E+02 0.0034 30.8 9.2 28 566-593 303-330 (489)
292 2ijq_A Hypothetical protein; s 44.0 1.1E+02 0.0039 26.1 8.7 25 503-527 37-61 (161)
293 3t5v_B Nuclear mRNA export pro 43.9 26 0.00088 35.9 5.4 64 536-599 180-254 (455)
294 1om2_A Protein (mitochondrial 43.8 29 0.00099 26.8 4.4 28 537-564 25-52 (95)
295 3t5x_A PCI domain-containing p 42.7 45 0.0015 29.9 6.3 35 298-332 14-48 (203)
296 2rpa_A Katanin P60 ATPase-cont 41.2 21 0.00073 26.5 3.1 27 267-293 15-41 (78)
297 1om2_A Protein (mitochondrial 40.0 32 0.0011 26.6 4.1 30 268-297 24-53 (95)
298 2w2u_A Hypothetical P60 katani 39.4 41 0.0014 25.2 4.6 25 267-291 22-46 (83)
299 2rpa_A Katanin P60 ATPase-cont 38.8 40 0.0014 25.0 4.3 26 335-360 15-40 (78)
300 2wpv_A GET4, UPF0363 protein Y 38.1 2.8E+02 0.0094 26.6 27.2 28 405-432 131-158 (312)
301 2npm_A 14-3-3 domain containin 36.7 2.6E+02 0.009 25.9 14.7 47 374-420 29-78 (260)
302 2v6y_A AAA family ATPase, P60 36.6 48 0.0016 24.8 4.6 20 271-290 18-37 (83)
303 4aez_C MAD3, mitotic spindle c 36.5 1.6E+02 0.0055 26.7 8.8 49 515-563 131-181 (223)
304 2cfu_A SDSA1; SDS-hydrolase, l 36.4 48 0.0017 35.8 6.5 52 262-313 447-498 (658)
305 4a5x_A MITD1, MIT domain-conta 35.6 50 0.0017 24.9 4.6 26 267-292 19-44 (86)
306 3bu8_A Telomeric repeat-bindin 33.9 2.6E+02 0.009 25.1 9.7 76 468-547 88-163 (235)
307 2w2u_A Hypothetical P60 katani 33.7 65 0.0022 24.1 4.9 22 538-559 25-46 (83)
308 4a1g_A Mitotic checkpoint seri 33.6 1.8E+02 0.0063 24.5 8.3 50 515-564 82-133 (152)
309 3mv2_A Coatomer subunit alpha; 33.0 3.4E+02 0.012 26.1 13.9 152 270-422 34-256 (325)
310 2wvi_A Mitotic checkpoint seri 32.7 2.3E+02 0.008 24.2 9.1 49 515-563 77-127 (164)
311 4a5x_A MITD1, MIT domain-conta 31.5 44 0.0015 25.3 3.6 24 503-526 21-44 (86)
312 2v6y_A AAA family ATPase, P60 31.1 74 0.0025 23.7 4.9 23 537-559 16-38 (83)
313 2uwj_G Type III export protein 30.9 1.1E+02 0.0036 24.0 5.6 87 510-602 18-105 (115)
314 2v6x_A Vacuolar protein sortin 30.0 69 0.0024 23.9 4.6 26 267-292 16-41 (85)
315 2vkj_A TM1634; membrane protei 29.2 45 0.0015 25.2 3.1 33 262-294 51-83 (106)
316 3re2_A Predicted protein; meni 29.1 1.4E+02 0.0048 29.2 7.3 75 270-359 241-323 (472)
317 1wfd_A Hypothetical protein 15 29.1 72 0.0025 24.4 4.6 25 267-291 18-42 (93)
318 3esl_A Checkpoint serine/threo 27.6 3.3E+02 0.011 24.2 16.4 66 532-598 80-147 (202)
319 4b4t_O 26S proteasome regulato 27.5 2.9E+02 0.01 27.3 10.2 89 506-594 84-197 (393)
320 2cpt_A SKD1 protein, vacuolar 27.0 74 0.0025 25.6 4.5 21 270-290 24-44 (117)
321 3lxu_X Tripeptidyl-peptidase 2 26.9 8.2E+02 0.028 28.7 14.5 151 264-422 1107-1331(1354)
322 2cwy_A Hypothetical protein TT 26.1 1.6E+02 0.0053 22.6 6.0 56 269-326 6-67 (94)
323 4aez_C MAD3, mitotic spindle c 25.8 3.2E+02 0.011 24.6 9.0 71 284-360 97-178 (223)
324 2dl1_A Spartin; SPG20, MIT, st 24.6 48 0.0017 26.6 2.8 33 513-560 18-50 (116)
325 4gq4_A Menin; tumor suppressor 24.0 4.2E+02 0.015 26.5 9.8 25 334-358 305-329 (489)
326 3mkr_B Coatomer subunit alpha; 24.0 4.8E+02 0.017 25.0 14.6 135 270-405 22-230 (320)
327 2pm7_A Protein WEB1, protein t 23.6 5.4E+02 0.019 25.5 11.2 29 406-434 246-274 (399)
328 1wfd_A Hypothetical protein 15 23.5 1.2E+02 0.004 23.2 4.9 24 536-559 19-42 (93)
329 2v6x_A Vacuolar protein sortin 23.4 1.2E+02 0.0041 22.5 4.9 24 536-559 17-40 (85)
330 2cfu_A SDSA1; SDS-hydrolase, l 22.0 1.4E+02 0.0048 32.2 6.9 49 498-546 449-497 (658)
331 2ynq_A ESSB; membrane protein, 21.9 3.5E+02 0.012 23.0 7.8 85 414-524 14-99 (161)
332 2cpt_A SKD1 protein, vacuolar 21.8 1.2E+02 0.0041 24.3 4.8 23 537-559 23-45 (117)
333 2dl1_A Spartin; SPG20, MIT, st 21.7 90 0.0031 25.0 3.9 16 279-294 18-33 (116)
334 2cwy_A Hypothetical protein TT 20.8 2.3E+02 0.008 21.5 6.1 24 539-562 8-31 (94)
335 3u84_A Menin; MLL, JUND, ledgf 20.8 2.3E+02 0.008 28.2 7.3 74 270-358 263-344 (550)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.1e-38 Score=328.84 Aligned_cols=359 Identities=18% Similarity=0.165 Sum_probs=325.4
Q ss_pred ccccccCccCCCCCCCCc--cccccccccCCCcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHHHHHHHHHHc
Q 040048 202 GVRGNNNTNKNNNRYPNS--VMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLKIMGNEDYKA 277 (608)
Q Consensus 202 A~~~~~~~~~~~~~~~~a--~lg~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~ 277 (608)
|+..+.+++..+|+.... .+|.++....+.. ++...+... ..|.++++|+.+|.++...
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-----------------~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLD-----------------RSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH-----------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 555566667777776555 5666554442211 123333332 3478899999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKH 357 (608)
Q Consensus 278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 357 (608)
|++++|+.+|++++.++|++..++..+|.++...|++++|+..|+++++++|+...++..+|.++...|++++|+..|++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048 358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF 437 (608)
Q Consensus 358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 437 (608)
++. .+|++ ...+..++.++...|++++|+..+++++..+|+. ...+..+|.++...|++++|+..|++++..
T Consensus 161 al~-~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 161 AIE-TQPNF------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHH-HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHH-hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 998 88887 6788899999999999999999999999999987 578999999999999999999999999999
Q ss_pred CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517 (608)
Q Consensus 438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA 517 (608)
+|++ ..++..+|.++...|++++|+..|+++++.+|+++.++. .+|.++...|++++|
T Consensus 233 ~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 233 SPNH----------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC------------NLANALKEKGSVAEA 290 (388)
T ss_dssp CTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH------------HHHHHHHHHSCHHHH
T ss_pred CcCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHH
Confidence 9975 889999999999999999999999999999999988875 899999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 518 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
+.+|+++++.+|.++.++..+|.++...|++++|+..|++++++.|++..++..+|.+|...|++++|+.+|+++++++|
T Consensus 291 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhh
Q 040048 598 DDEEVDQALQ 607 (608)
Q Consensus 598 ~~~~~~~~L~ 607 (608)
++.+++..|.
T Consensus 371 ~~~~a~~~lg 380 (388)
T 1w3b_A 371 TFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHhHH
Confidence 9999887653
No 2
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.6e-35 Score=302.36 Aligned_cols=333 Identities=20% Similarity=0.294 Sum_probs=309.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+++.++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCc---hhHHHHHH------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQ---VDIAKAKS------LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYAL 413 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p---~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 413 (608)
...|++++|+..|++++. ..| .+...... ...+..++..+...|++++|+..+++++...|.. +.++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLK-SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-AELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HHcCChHHHHHHHHHHHh-cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHH
Confidence 999999999999999999 888 65433222 2334556889999999999999999999999987 578999
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
+|.++...|++++|+..+++++...|++ ..++..+|.++...|++++|+..|+++++..|++...+..+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDN----------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9999999999999999999999999875 899999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV----LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
.+..+.....+|.++...|++++|+..|++++...|+++. ++..+|.++...|++++|+.+|+++++.+|+++.++
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 7777777788999999999999999999999999999874 466799999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+.+|.++...|++++|+.+|+++++++|++..++..|.
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.8e-36 Score=312.49 Aligned_cols=328 Identities=17% Similarity=0.139 Sum_probs=310.1
Q ss_pred cchhHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 249 AEPTSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 249 ~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
++|...+..+ ..|.++.++..+|.+++..|++++|+.++++++..+|.++.+|..+|.++...|++++|+..|+++++
T Consensus 16 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555554 34888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406 (608)
Q Consensus 327 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 406 (608)
++|++..++..+|.++...|++++|+..|++++. .+|+. ...+..++.++...|++++|+..+++++...|+.
T Consensus 96 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPDL------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTTC------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999998 88887 6778889999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
...+..+|.++...|++++|+..|++++..+|+. ..++..+|.++...|++++|+..|++++..+|++.
T Consensus 169 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 169 -AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp -HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 5789999999999999999999999999999975 88999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
.++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+++
T Consensus 238 ~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 238 VVHG------------NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHH------------HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 8876 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.++..+|.++...|++++|+..|+++++++|++..++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999999999999999999999999887665
No 4
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.1e-34 Score=304.99 Aligned_cols=336 Identities=19% Similarity=0.291 Sum_probs=311.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
.|.+++.++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhH---HHHHH------HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDI---AKAKS------LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI 410 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~---~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 410 (608)
.+|...|++++|+..|++++. .+|.+. ..... ...++.++..+...|++++|+..+++++...|.. ..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-AEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHH
Confidence 999999999999999999999 888775 32221 1235667888999999999999999999999887 578
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 490 (608)
+..+|.+|...|++++|+..|++++...|++ ..++..+|.++...|++++|+..|++++...|++...+.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 249 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDN----------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999999988874 899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
.+..+.....+..+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+..|++++++.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 329 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 776666777777889999999999999999999999999985 4788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
.+|..+|.++...|++++|+.+|+++++++|++..++..|.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999999999999999887664
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-31 Score=292.30 Aligned_cols=316 Identities=12% Similarity=0.043 Sum_probs=265.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-----------------------------------------
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY----------------------------------------- 300 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~----------------------------------------- 300 (608)
.++.+|+.+|.++...|++++|+.+|+++++.+|++..+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 357889999999999999999999999999988875544
Q ss_pred ------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 301 ------------------------------RSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350 (608)
Q Consensus 301 ------------------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 350 (608)
+..+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 44455555566666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
|+..+++++. ..|.+ ...+..++..+...|++++|+..|+++++..|.+ ...+..++.+|...|++++|+..
T Consensus 358 A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 358 LYLISNDLVD-RHPEK------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHHHHHHHH-HCTTS------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHh-hCccc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666554 45544 5677778888999999999999999999888876 46788889999999999999999
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~ 510 (608)
|++++...|++ ..++..+|.++...|++++|+..|+++++..|.+...+. .+|.++..
T Consensus 430 ~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~ 487 (597)
T 2xpi_A 430 YTTAARLFQGT----------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN------------ELGVVAFN 487 (597)
T ss_dssp HHHHHHTTTTC----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHH
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHH
Confidence 99988888764 778888999999999999999999999999998887765 89999999
Q ss_pred cCCHHHHHHHHHHhhcC------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 040048 511 QAKFSEAAAAYGDGLGL------DPYN-SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWE 583 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 583 (608)
.|++++|+.+|+++++. +|+. ..+|..+|.++...|++++|+..|++++++.|+++.+|..+|.+|...|+++
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999987 6654 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 584 ASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 584 ~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|+++|+++++++|+++.++..|.
T Consensus 568 ~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 568 LAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999999999999999887764
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.2e-32 Score=288.53 Aligned_cols=353 Identities=16% Similarity=0.138 Sum_probs=298.1
Q ss_pred ccccCccCCCCCCCCc--cccccccccCCCcccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCC
Q 040048 204 RGNNNTNKNNNRYPNS--VMGNVVKKQNDHPQNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGN 279 (608)
Q Consensus 204 ~~~~~~~~~~~~~~~a--~lg~i~~~~~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~ 279 (608)
..+.+++..+|..... .+|.++... +...+|...+..++ .|.++.+++.+|.+++..|+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~-----------------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 75 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAA-----------------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK 75 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccccccHHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC
Confidence 3345566666665544 555555444 22223344444442 47789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHH
Q 040048 280 FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH---RAHHRL------------ANLYLR 344 (608)
Q Consensus 280 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l------------a~~~~~ 344 (608)
+++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++. .++..+ |.++..
T Consensus 76 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 776655 667999
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCh
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKH 424 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~ 424 (608)
.|++++|+..|++++. ..|.+ ...+..++.++...|++++|+..+++++..+|.. +.++..+|.++...|++
T Consensus 156 ~~~~~~A~~~~~~~~~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILE-VCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKNDN-TEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-HHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHH-hCCCC------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH
Confidence 9999999999999998 88877 5778899999999999999999999999998877 58899999999999999
Q ss_pred HHHHHHhhcCCCCCCcccccccCCCCcHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 425 QEADETLKNGPNFDVDETTRFFGPIGNANLLVV------------RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 425 ~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
++|+..|++++...|+. ...+.. +|.++...|++++|+..|++++...|+++....
T Consensus 228 ~~A~~~~~~~~~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-- 295 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV-- 295 (450)
T ss_dssp HHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH--
T ss_pred HHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH--
Confidence 99999999999998875 444443 499999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
..+..+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+
T Consensus 296 ------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 296 ------RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp ------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred ------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH------------HHHcC-----CHHHHHHHHHH-HHHhCCCC
Q 040048 573 ADC------------FAKIE-----KWEASMQDYEI-LKKEAPDD 599 (608)
Q Consensus 573 a~~------------~~~~g-----~~~~A~~~~~~-al~l~P~~ 599 (608)
+.+ |..+| +.+++.+.|++ +++..|++
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 955 44445 56788999997 88888874
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.9e-31 Score=290.08 Aligned_cols=320 Identities=22% Similarity=0.227 Sum_probs=265.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
.++.|+.+|..++..|++++|+.+|++++..+|+++.++..+|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHH------------------------------------------------------------------
Q 040048 343 LRLGEVEKAIYHFK------------------------------------------------------------------ 356 (608)
Q Consensus 343 ~~~g~~~~A~~~~~------------------------------------------------------------------ 356 (608)
..+|++++|+..|+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 77777777766653
Q ss_pred -------------------------------------------HhCCCCCchhHH-HHHHHHHHHHHhHHHHHhhcHHHH
Q 040048 357 -------------------------------------------HAGPEADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTL 392 (608)
Q Consensus 357 -------------------------------------------~al~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~A 392 (608)
+++. .+|++.. ......++..++..+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 3333 3333321 112244677888899999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 040048 393 IQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL 472 (608)
Q Consensus 393 ~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 472 (608)
+..+++++...|. ..++..+|.++...|++++|+..|++++...|++ ..++..+|.++...|++++|+
T Consensus 263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY----------PPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999998 6889999999999999999999999999999875 889999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
..|++++...|.+..++. .+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+
T Consensus 331 ~~~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHHHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999988776 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 553 EDCNAALNVRPGYS------KARLRRADCFAKI----------EKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 553 ~~~~~al~~~p~~~------~a~~~la~~~~~~----------g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
..|++++++.|++. ..++.+|.++... |++++|+.+|+++++++|++..++..|.
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999877653 3467778999999 9999999999999999999998877653
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.8e-32 Score=292.28 Aligned_cols=339 Identities=14% Similarity=0.127 Sum_probs=293.0
Q ss_pred cccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 040048 236 YNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313 (608)
Q Consensus 236 y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 313 (608)
+..+......+.+.+|...++..+ .|.++.+++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 333333333444444555555543 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 040048 314 LLEAVFEC------------------------------------------------------------------------ 321 (608)
Q Consensus 314 ~~eA~~~~------------------------------------------------------------------------ 321 (608)
+++|+..|
T Consensus 109 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88887655
Q ss_pred -------------------------------------HHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 322 -------------------------------------REAIRIEPHYHR-------AHHRLANLYLRLGEVEKAIYHFKH 357 (608)
Q Consensus 322 -------------------------------------~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~ 357 (608)
+++++.+|++.. ++..+|.++...|++++|+..|++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 333445666643 577888999999999999999999
Q ss_pred hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048 358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF 437 (608)
Q Consensus 358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 437 (608)
++. .+|. ...+..++.++...|++++|+..+++++...|.. +.++..+|.++...|++++|+..|++++..
T Consensus 269 ~~~-~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 269 SIN-LHPT-------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHH-HCCC-------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh-cCCC-------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 998 7776 2567788999999999999999999999999987 578999999999999999999999999999
Q ss_pred CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517 (608)
Q Consensus 438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA 517 (608)
.|++ ..++..+|.++...|++++|+..|+++++..|++..++. .+|.++...|++++|
T Consensus 340 ~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 340 NPEN----------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTA 397 (537)
T ss_dssp CTTC----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHH
T ss_pred CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHH
Confidence 8875 788999999999999999999999999999999988876 889999999999999
Q ss_pred HHHHHHhhcCCCCCH------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 518 AAAYGDGLGLDPYNS------VLLCNRAACRSKL----------GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 518 ~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
+.+|++++...|.+. ..++.+|.++... |++++|+.+|+++++.+|++..++..+|.+|..+|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 999999999876543 3467788999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 582 WEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+++|+.+|+++++++|++.+....
T Consensus 478 ~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999987654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-32 Score=290.50 Aligned_cols=346 Identities=15% Similarity=0.105 Sum_probs=283.9
Q ss_pred cchhHHHHhhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040048 249 AEPTSLCRALST-RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI 327 (608)
Q Consensus 249 ~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 327 (608)
.+|...+...+. .+++.+++.+|.+++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|++++..
T Consensus 23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 334444444432 2368888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCC----------------------------------------------------------------------------
Q 040048 328 EPHY---------------------------------------------------------------------------- 331 (608)
Q Consensus 328 ~p~~---------------------------------------------------------------------------- 331 (608)
.|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
T 2gw1_A 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182 (514)
T ss_dssp SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcC
Confidence 6522
Q ss_pred ---HHHHHHHHHHHHH---cCCHHHHHHHHHHhCC-----C-CCchhHH-HHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048 332 ---HRAHHRLANLYLR---LGEVEKAIYHFKHAGP-----E-ADQVDIA-KAKSLQAHLNKCTDAKRTRDWNTLIQETRA 398 (608)
Q Consensus 332 ---~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~-~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 398 (608)
..+++.+|.+++. .|++++|+..|++++. . ..|.+.. .......+..++..+...|++++|+..+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666777777776 7888888888888764 1 1333321 345578888999999999999999999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 399 AIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478 (608)
Q Consensus 399 al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (608)
++...|. ..++..+|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|+++
T Consensus 263 ~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 263 AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN----------SSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------THHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999998 7889999999999999999999999999988875 677888888888888888888888888
Q ss_pred HHhCCCChHHHHHHHHH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH---
Q 040048 479 AKQDSNNKEVNMVMRKA----------------------KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV--- 533 (608)
Q Consensus 479 l~~~p~~~~~~~~l~~~----------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~--- 533 (608)
+...|.+..++..+..+ .....+..+|.++...|++++|+.+|++++...|.+..
T Consensus 331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 88888877666544322 01334678899999999999999999999998887744
Q ss_pred ---HHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 534 ---LLCNRAACRSK---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 534 ---~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
++..+|.++.. .|++++|+..|++++...|++..++..+|.+|...|++++|+.+|+++++++|++++++..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 89999999999 99999999999999999999999999999999999999999999999999999999887765
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7e-31 Score=266.33 Aligned_cols=293 Identities=15% Similarity=0.129 Sum_probs=273.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
+.+++.+..+|..++..|++++|+.+|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC-CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 341 LYLRLG-EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 341 ~~~~~g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
++...| ++++|+..|++++. .+|.+ ...+..++.++...|++++|+..+++++...|... ..+..+|.++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~-~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~ 170 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATT-LEKTY------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-LPMLYIGLEYG 170 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHT-TCTTC------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-HHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHH-hCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-HHHHHHHHHHH
Confidence 999999 99999999999999 88887 56788999999999999999999999999998864 56777999999
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD---------SNNKEVNM 490 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~ 490 (608)
..|++++|+..+++++...|++ ..++..+|.++...|++++|+..+++++... |....++.
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPED----------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 9999999999999999999985 8999999999999999999999999999986 44455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570 (608)
Q Consensus 491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 570 (608)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|++..++.
T Consensus 241 ------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 241 ------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred ------------HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHcCCHH
Q 040048 571 RRADCF-AKIEKWE 583 (608)
Q Consensus 571 ~la~~~-~~~g~~~ 583 (608)
.++.++ ...|+.+
T Consensus 309 ~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 309 MLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHTTTTC--
T ss_pred HHHHHHHHHhCchh
Confidence 999998 5666654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=7.2e-31 Score=269.12 Aligned_cols=317 Identities=17% Similarity=0.135 Sum_probs=279.5
Q ss_pred cchhHHHHhh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 249 AEPTSLCRAL--STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 249 ~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
.+|...+..+ ..|.++.+++.+|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 3445555544 34788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 327 IEP---HYHRAHHRL------------ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 327 ~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
++| ++..++..+ |.++...|++++|+..|++++. ..|.+ ...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE-VCVWD------AELRELRAECFIKEGEPRK 172 (359)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCc------hHHHHHHHHHHHHCCCHHH
Confidence 999 888888777 7999999999999999999998 88877 5788899999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC--CCCcHHHHHHHHHHHHHcCCHH
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG--PIGNANLLVVRAQVNLACGRFE 469 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 469 (608)
|+..+++++...|.. +.++..+|.++...|++++|+..|+++++..|+....+.. ..........+|.++...|+++
T Consensus 173 A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 173 AISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999887 5789999999999999999999999999998886321100 0000112335588999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 040048 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549 (608)
Q Consensus 470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 549 (608)
+|+..|++++...|++...+. ..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+++
T Consensus 252 ~A~~~~~~~~~~~~~~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEYTV--------RSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCCchHHHH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999876543 234579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 550 KAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 550 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
+|+.+|+++++++|++..++..++.++..+++
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876653
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-31 Score=283.84 Aligned_cols=250 Identities=12% Similarity=0.063 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHH
Q 040048 299 SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLN 378 (608)
Q Consensus 299 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~ 378 (608)
.+++.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++. .+|.+ ...+..
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~------~~~~~~ 309 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALK-LDSNN------SSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHT-TCTTC------THHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhh-cCcCC------HHHHHH
Confidence 34444555555555555555555555555555 55555555555555555555555555554 44444 334555
Q ss_pred HhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048 379 KCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR 458 (608)
Q Consensus 379 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 458 (608)
++.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++++...|++ ..++..+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l 378 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA----------PEVPNFF 378 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC----------SHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC----------HHHHHHH
Confidence 5555555666666666666666555554 2455555666666666666666666655555543 4555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QAKFSEAAAAYGDGLGLDPYNSVLL 535 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p~~~~~~ 535 (608)
|.++...|++++|+..|++++...|++..... .+..+..+|.++.. .|++++|+..|++++..+|+++.++
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYV------GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHH------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 66666666666666666666666555543000 01134599999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRA 573 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 573 (608)
..+|.++...|++++|+..|+++++++|++..++..+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999998887764
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=261.43 Aligned_cols=291 Identities=9% Similarity=-0.041 Sum_probs=266.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 287 YDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 287 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
....+...|+++..+..+|.+++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++. .+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~ 89 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD-LYPSN 89 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTS
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCC
Confidence 34556667888899999999999999999999999999999999999999999999999999999999999998 88877
Q ss_pred HHHHHHHHHHHHHhHHHHHhh-cHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048 367 IAKAKSLQAHLNKCTDAKRTR-DWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRF 445 (608)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 445 (608)
...+..++..+...| ++++|+..+++++..+|.. ..++..+|.++...|++++|+..|++++...|+.
T Consensus 90 ------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 158 (330)
T 3hym_B 90 ------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---- 158 (330)
T ss_dssp ------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----
T ss_pred ------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----
Confidence 678889999999999 9999999999999999887 4688999999999999999999999999998874
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048 446 FGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL 525 (608)
Q Consensus 446 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 525 (608)
..++..+|.++...|++++|+..|+++++..|.+..++. .+|.++...|++++|+.+|++++
T Consensus 159 ------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 159 ------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH------------EVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp ------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcccHHHHHHHHHHHH
Confidence 677888999999999999999999999999999988775 89999999999999999999999
Q ss_pred cCC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 526 GLD---------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 526 ~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
... |..+.++..+|.++...|++++|+.+|++++++.|++..++..+|.++..+|++++|+.+|+++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 875 66788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhh
Q 040048 597 PDDEEVDQALQ 607 (608)
Q Consensus 597 P~~~~~~~~L~ 607 (608)
|++..++..|.
T Consensus 301 p~~~~~~~~l~ 311 (330)
T 3hym_B 301 RDDTFSVTMLG 311 (330)
T ss_dssp SCCHHHHHHHH
T ss_pred CCchHHHHHHH
Confidence 99999887653
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-29 Score=280.33 Aligned_cols=325 Identities=14% Similarity=0.065 Sum_probs=246.5
Q ss_pred hHHHHhh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------CCChhHHHHHHHHHHHcCCH
Q 040048 252 TSLCRAL-STRMDPETLKIMGNEDYKAGNFAEALALYDAAISID----------------PNKASYRSNKTAALIALGRL 314 (608)
Q Consensus 252 ~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~ 314 (608)
...+... ..+.++.++..+|.++...|++++|+..|++..... |.+..+|+.+|.+|...|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 3344433 236789999999999999999999999999633222 22378899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHH
Q 040048 315 LEAVFECREAIRIEPHYHRAHHRLAN--------------------------------------LYLRLGEVEKAIYHFK 356 (608)
Q Consensus 315 ~eA~~~~~~al~~~p~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~~~~ 356 (608)
++|+..|+++++.+|++..++..++. +|...|++++|+..|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999999999988777666543 2335677777777777
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh-----------------------------
Q 040048 357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----------------------------- 407 (608)
Q Consensus 357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------------------- 407 (608)
+++. . |.+ ...+..++..+...|++++|+..+++++..+|.+.
T Consensus 297 ~~~~-~-~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 297 SING-L-EKS------SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp TSTT-G-GGC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Hhhc-C-Cch------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 7766 4 333 45566666667777777777777777666555431
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 408 ----PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 408 ----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
..++..+|.+|...|++++|+..|+++++..|++ ..+|..++.+|...|++++|+..|++++...|
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445555666666666666666666665555543 55666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 040048 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV-- 561 (608)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 561 (608)
++...+. .+|.++...|++++|+.+|+++++..|.++.+|..+|.++...|++++|++.|+++++.
T Consensus 439 ~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 439 GTHLPYL------------FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp TCSHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 5555543 88999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 562 ----RPGY-SKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 562 ----~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+|+. ..+|..+|.+|...|++++|++.|+++++++|++..++..|
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 5654 78899999999999999999999999999999998887665
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=9.6e-31 Score=270.14 Aligned_cols=294 Identities=14% Similarity=0.071 Sum_probs=214.9
Q ss_pred HHHcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 040048 274 DYKAGNFAEALA-LYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV 348 (608)
Q Consensus 274 ~~~~g~~~~Al~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 348 (608)
+...|+|++|+. .|++++.+.|+++ ..++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334455555555 5555555555442 33555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH---------------HHH
Q 040048 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI---------------YAL 413 (608)
Q Consensus 349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~ 413 (608)
++|+..|++++. ++|.+ ...+..++.++...|++++|+..+++++...|...... +..
T Consensus 115 ~~A~~~~~~al~-~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 115 LLAISALRRCLE-LKPDN------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHHHHHHHHHh-cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 555555555555 45544 34455555555555555555555555555555443221 123
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
++.++ ..|++++|+..|++++...|+.. ...++..+|.++...|++++|+..|++++...|++..++.
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 255 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSI--------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN--- 255 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH---
Confidence 56666 88999999999999999888721 2889999999999999999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------- 565 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------- 565 (608)
.+|.++...|++++|+.+|++++.++|.++.++..+|.++...|++++|+.+|++++.+.|++
T Consensus 256 ---------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 256 ---------KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 899999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 566 ---SKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 566 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
..+|..+|.+|..+|++++|..+++++++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 899999999999999999999999988765
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=278.35 Aligned_cols=350 Identities=12% Similarity=-0.009 Sum_probs=263.9
Q ss_pred ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 040048 220 VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISID--- 294 (608)
Q Consensus 220 ~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~--- 294 (608)
.+|.|+... +++|..+|++++.+.+. .......+....+|.++|.+|+..|++++|+.+|++++.+.
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~--------~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQ--------EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHh--------cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 678887665 77888877765443211 00111235567889999999999999999999999999863
Q ss_pred -----CCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhCCCCCc
Q 040048 295 -----PNKASYRSNKTAALIAL--GRLLEAVFECREAIRIEPHYHRAHHRLANLYLR---LGEVEKAIYHFKHAGPEADQ 364 (608)
Q Consensus 295 -----p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~p 364 (608)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++.. .+++++|++.|++++. ++|
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-LNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-HCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-cCC
Confidence 44577888999888775 479999999999999999999999999988654 5778899999999998 888
Q ss_pred hhHHHHHHHHHHHHHhH----HHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048 365 VDIAKAKSLQAHLNKCT----DAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440 (608)
Q Consensus 365 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 440 (608)
.+. ..+..++. .....+++++|+..+++++..+|.. ..++..+|.+|...|++++|+..|+++++..|+
T Consensus 207 ~~~------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 207 DNQ------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp SCH------HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cch------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 883 33333443 3445678899999999999999987 478889999999999999999999999999998
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 441 ETTRFFGPIGNANLLVVRAQVNLAC-------------------GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
+ ..++..+|.+|... +.+++|+..|++++.++|....++.
T Consensus 280 ~----------~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------- 338 (472)
T 4g1t_A 280 N----------AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS----------- 338 (472)
T ss_dssp C----------HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH-----------
T ss_pred h----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh-----------
Confidence 5 88888899887543 3468899999999999999988876
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHhcC---------------
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV---LLCNRAAC-RSKLGQFEKAIEDCNAALNVR--------------- 562 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~--------------- 562 (608)
.+|.++...|++++|+.+|++++.+++++.. +++.+|.+ +...|++++|+.+|++++++.
T Consensus 339 -~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~ 417 (472)
T 4g1t_A 339 -ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQK 417 (472)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred -hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999887643 45667755 457899999999999998764
Q ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 563 ---------PGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 563 ---------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|+++.+|..+|.+|..+|++++|+++|++++++.|.++.+...+.
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 556778999999999999999999999999999999998877664
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=262.54 Aligned_cols=281 Identities=16% Similarity=0.086 Sum_probs=240.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.++..++.+|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|...|++++|+..|++++. +.|.+.. .+..++ ....++..+|.++...
T Consensus 143 ~~~~g~~~~A~~~~~~al~-~~p~~~~------~~~~~~-------------------------~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK-QNPKYKY------LVKNKK-------------------------GSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCHHHHC------C--------------------------------------------CC
T ss_pred HHccccHHHHHHHHHHHHH-hCccchH------HHhhhc-------------------------cchHHHHHHHHHHhhh
Confidence 9999999999999999988 7776521 111110 0123445567788888
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
|++++|+.+|++++...|+. .++.++..+|.++...|++++|+..|+++++..|++..++.
T Consensus 191 g~~~~A~~~~~~al~~~p~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------- 251 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDM--------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN----------- 251 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSS--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-----------
T ss_pred hhHHHHHHHHHHHHHhCcCc--------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------
Confidence 88888888888888877762 12889999999999999999999999999999999988876
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------------YSKAR 569 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~ 569 (608)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|..+|++++|+.+|++++++.|+ ...+|
T Consensus 252 -~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 252 -RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999877 36789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
..++.++..+|+.+.|..+.++.++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999999888776544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=8.2e-29 Score=255.65 Aligned_cols=298 Identities=13% Similarity=0.048 Sum_probs=257.3
Q ss_pred ccCCCccc-ccccCCCCCCCCCCcchhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 040048 227 KQNDHPQN-HYNYNPPKPASSSSAEPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKT 305 (608)
Q Consensus 227 ~~~~~a~~-~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la 305 (608)
+.++.|.. .|..++.+.+.+. ..+...++.+|.+++..|++++|+.+|+++++.+|+++.++..+|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 105 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENP-------------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLG 105 (368)
T ss_dssp -------CHHHHCCCCCCSSCT-------------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCc-------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44777777 7777777665421 224567899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHH----------HHH
Q 040048 306 AALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKS----------LQA 375 (608)
Q Consensus 306 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~----------~~~ 375 (608)
.++...|++++|+..|+++++++|++..++..+|.+|...|++++|+..|++++. ..|.+...... ...
T Consensus 106 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 106 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSTTTGGGCC--------------
T ss_pred HHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHhhhhcccHH
Confidence 9999999999999999999999999999999999999999999999999999998 77766321110 011
Q ss_pred HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADS-APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL 454 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~ 454 (608)
+..++..+ ..|++++|+..+++++...|.. ...++..+|.++...|++++|+..|++++...|++ ..+
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~ 253 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND----------YLL 253 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------HHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----------HHH
Confidence 11344444 8899999999999999999984 46889999999999999999999999999998875 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN--- 531 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--- 531 (608)
+..+|.++...|++++|+..|++++.+.|++..++. .+|.++...|++++|+.+|++++.+.|++
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY------------NLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999988775 89999999999999999999999998887
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 532 --------SVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 532 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
..+|..+|.++..+|++++|..+++++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 899999999999999999999999887764
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=3.9e-29 Score=253.06 Aligned_cols=286 Identities=14% Similarity=0.096 Sum_probs=247.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
+++.++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH-HH-HHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ-AE-ALLK 420 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l-a~-~~~~ 420 (608)
...|++++|+..|++++. ..|.+.. .+..+. ...+.. .....+ +. ++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~-~~~~~~~------~~~~~~--------------------~~~~~~--~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLL-SQPQYEQ------LGSVNL--------------------QADVDI--DDLNVQSEDFFFAA 150 (327)
T ss_dssp HHTTCHHHHHHHHHHHHH-TSTTTTT------C------------------------------------------CCTTS
T ss_pred HHcCCHHHHHHHHHHHHH-hCCccHH------HHHHHh--------------------HHHHHH--HHHHHHHHhHHHHH
Confidence 999999999999999988 7776521 111000 000000 011122 33 4667
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++...|++..++.
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------- 210 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN---------- 210 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----------
T ss_pred cccHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH----------
Confidence 777888888888888777764 889999999999999999999999999999999988775
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------------YSKA 568 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a 568 (608)
.+|.++...|++++|+.+|+++++..|++..++..+|.++...|++++|+.+|++++.+.|+ +..+
T Consensus 211 --~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 211 --KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 569 RLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 569 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
+..+|.++..+|++++|...++++++..|++
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999988876654
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=256.55 Aligned_cols=312 Identities=14% Similarity=0.054 Sum_probs=262.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI---------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI----- 327 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 327 (608)
..+..+..+|.++..+|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.+|++++++
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667889999999999999999999999986 5677788999999999999999999999999986
Q ss_pred ---CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH---hhcHHHHHHHHHHH
Q 040048 328 ---EPHYHRAHHRLANLYLRLG--EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR---TRDWNTLIQETRAA 399 (608)
Q Consensus 328 ---~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a 399 (608)
.+..+.++..+|.++...| ++++|+.+|++++. ++|++ ..++..++.++.. .++.++|+..++++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~-~~p~~------~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKN------PEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSTTC------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3456788988888877654 69999999999999 99988 4555556655444 45668899999999
Q ss_pred HHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 400 IAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI 475 (608)
Q Consensus 400 l~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (608)
++++|+.. .++..+|..+.. .+++++|+.++++++..+|+. ..++..+|.+|...|++++|+..|
T Consensus 202 l~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 202 IRLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV----------TDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp HHHCSSCH-HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCcch-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHHcCchHHHHHHH
Confidence 99999874 566666765554 567889999999999999875 889999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-------------------HcCCHHHHHHHHHHhhcCCCCCHHHHH
Q 040048 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF-------------------KQAKFSEAAAAYGDGLGLDPYNSVLLC 536 (608)
Q Consensus 476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~-------------------~~g~~~eA~~~~~~al~~~p~~~~~~~ 536 (608)
+++++..|++..++. .+|.+|. ..+.+++|+..|++++..+|.+..++.
T Consensus 271 ~~al~~~p~~~~~~~------------~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 338 (472)
T 4g1t_A 271 KKALEYIPNNAYLHC------------QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338 (472)
T ss_dssp HHHHHHSTTCHHHHH------------HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHH
T ss_pred HHHHHhCCChHHHHH------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhh
Confidence 999999999998876 4444443 234578999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPGYSK---ARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
.+|.++...|++++|+.+|++++++.|++.. +++.+|.+ +...|++++|+.+|+++++++|++.+..
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~ 409 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE 409 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999999999887643 46677765 4578999999999999999998876644
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.1e-28 Score=253.39 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRIEPHYHRAHHRL 338 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l 338 (608)
.|.++++|..+|.++...|++++|+.+|+++|.++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL 418 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~ 418 (608)
|.++..+|++++|+..|++++. ++|.+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~-ldP~~---------------------------------------------------- 199 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILN-QDAKN---------------------------------------------------- 199 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHH-HCTTC----------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHHHHH-hCccC----------------------------------------------------
Confidence 9999999999999999999887 66655
Q ss_pred HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048 419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 498 (608)
..+|..+|.++...|++++|+..|+++++++|++..+|.
T Consensus 200 ---------------------------------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~-------- 238 (382)
T 2h6f_A 200 ---------------------------------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN-------- 238 (382)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH--------
T ss_pred ---------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH--------
Confidence 667777888888888888888888888888888887775
Q ss_pred HHHHHHHHHHHH-cCCHHHH-----HHHHHHhhcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHH
Q 040048 499 AAARSNGNALFK-QAKFSEA-----AAAYGDGLGLDPYNSVLLCNRAACRSKLG--QFEKAIEDCNAALNVRPGYSKARL 570 (608)
Q Consensus 499 ~~~~~lg~~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~ 570 (608)
.+|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.++++ +.+|++..++.
T Consensus 239 ----~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~ 313 (382)
T 2h6f_A 239 ----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIA 313 (382)
T ss_dssp ----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred ----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHH
Confidence 77888887 4544666 47888888888888888888888888877 588888888877 78888888888
Q ss_pred HHHHHHHHcC--------C-HHHHHHHHHHH-HHhCCCCHHHHHHh
Q 040048 571 RRADCFAKIE--------K-WEASMQDYEIL-KKEAPDDEEVDQAL 606 (608)
Q Consensus 571 ~la~~~~~~g--------~-~~~A~~~~~~a-l~l~P~~~~~~~~L 606 (608)
.+|.+|.++| + +++|+++|+++ ++++|.....|..+
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 8888888874 2 57888888888 88888888777654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=3.5e-28 Score=251.14 Aligned_cols=262 Identities=15% Similarity=0.137 Sum_probs=210.2
Q ss_pred HHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048 284 LALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 284 l~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 359 (608)
+..+.+++...+.++ ..++.+|.++...|++++|+..|++++..+|++..++..+|.+|...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555554 4599999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCC
Q 040048 360 PEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDV 439 (608)
Q Consensus 360 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 439 (608)
. ++|.+ ..++..+|.++...|++++|+..|+++++..|
T Consensus 127 ~-~~p~~-----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 127 E-LQPNN-----------------------------------------LKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp H-HCTTC-----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred h-cCCCC-----------------------------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 8 67766 34555566666666666666666666666666
Q ss_pred cccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 040048 440 DETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEA 517 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA 517 (608)
+....+....+....+..+|.++...|++++|+..|++++...|. +..++. .+|.++...|++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT------------GLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH------------HHHHHHHHHTCHHHH
T ss_pred cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH------------HHHHHHHHCCCHHHH
Confidence 543333221123556667899999999999999999999999999 666665 899999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 518 AAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 518 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
+.+|+++++.+|+++.+|..+|.++...|++++|+.+|++++++.|+++.++..+|.+|..+|++++|+.+|+++++++|
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 040048 598 DD 599 (608)
Q Consensus 598 ~~ 599 (608)
++
T Consensus 313 ~~ 314 (365)
T 4eqf_A 313 KS 314 (365)
T ss_dssp CC
T ss_pred cc
Confidence 84
No 23
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=2.2e-27 Score=234.14 Aligned_cols=248 Identities=12% Similarity=0.008 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY----HRAHHRL 338 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~l 338 (608)
+++.++.+|.+++..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999998 4333 4568899
Q ss_pred HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 040048 339 ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEAL 418 (608)
Q Consensus 339 a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~ 418 (608)
|.++...|++++|+..|++++. .+|.+ ..++..+|.++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~-~~~~~-----------------------------------------~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVD-RDTTR-----------------------------------------LDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTC-----------------------------------------THHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHh-cCccc-----------------------------------------HHHHHHHHHHH
Confidence 9999999999999988888876 44443 24555556666
Q ss_pred HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048 419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 498 (608)
...|++++|+..|+++++..|.+ ..++..+|......+++++|+..|+++++..|++...+.
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-------- 180 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTD----------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL-------- 180 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred HHccCHHHHHHHHHHHhhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH--------
Confidence 66666666666666666655543 555555553333334555555555555555555544433
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHhhcCC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 499 AAARSNGNALFKQAK---FSEAAAAYGDGLGLD---PY-----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
.+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|++++|+.+|+++++++|+++.
T Consensus 181 ----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 181 ----WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp ----HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ----HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 44555555555 555555555555442 22 1134444455555555555555555555555555544
Q ss_pred HHHHHHHH
Q 040048 568 ARLRRADC 575 (608)
Q Consensus 568 a~~~la~~ 575 (608)
++-.++.+
T Consensus 257 a~~~l~~~ 264 (272)
T 3u4t_A 257 AIDGLKMK 264 (272)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhh
Confidence 44444443
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-26 Score=224.87 Aligned_cols=238 Identities=24% Similarity=0.379 Sum_probs=188.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------HRAH 335 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~ 335 (608)
.++.++.+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|+. ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 36788999999999999999999999999998 888899999999999999999999999999888766 6788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 040048 336 HRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQA 415 (608)
Q Consensus 336 ~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la 415 (608)
..+|.+|...|++++|+..|++++. +.|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-------------------------------------------------- 111 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT-EHRT-------------------------------------------------- 111 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCCC--------------------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh-cCch--------------------------------------------------
Confidence 8888888888888888888877765 2221
Q ss_pred HHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040048 416 EALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKA 495 (608)
Q Consensus 416 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 495 (608)
+.++...|++++|+..+++++..+|.+..++.
T Consensus 112 -------------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----- 143 (258)
T 3uq3_A 112 -------------------------------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR----- 143 (258)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----
T ss_pred -------------------------------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH-----
Confidence 12344455667777777777777666555554
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|+++.+++.+|.+
T Consensus 144 -------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 144 -------LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7777777888888888888888887787788888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHhh
Q 040048 576 FAKIEKWEASMQDYEILKKEA------PDDEEVDQALQ 607 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l~------P~~~~~~~~L~ 607 (608)
+..+|++++|+.+|+++++++ |++.+++..|.
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 888888888888888888887 77777776654
No 25
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=242.83 Aligned_cols=312 Identities=13% Similarity=0.078 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPH 330 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~ 330 (608)
......++.+|..++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577899999999999999999999999999999984 67999999999999999999999999887 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--------------------HH
Q 040048 331 YHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--------------------WN 390 (608)
Q Consensus 331 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 390 (608)
...++..+|.+|...|++++|+..+++++. +.+...........+..++.++...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 477899999999999999999999999987 666554445567789999999999999 99
Q ss_pred HHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc
Q 040048 391 TLIQETRAAIAGG-----ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC 465 (608)
Q Consensus 391 ~A~~~~~~al~~~-----~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~ 465 (608)
+|+..+.+++... +.....++..+|.++...|++++|+.++++++...+...... ....++..+|.++...
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHc
Confidence 9999999998752 222345788999999999999999999999998765532211 1256899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHH
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRA 539 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la 539 (608)
|++++|+.++++++.+.+....... ....+..+|.++...|++++|+.+|++++.+.+.. ..++..+|
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999999999988765432211 13345699999999999999999999999875433 67899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHH
Q 040048 540 ACRSKLGQFEKAIEDCNAALNVRP------GYSKARLRRADCFAKIEKWE 583 (608)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~ 583 (608)
.+|...|++++|+.+|++++++.+ ....++..+|.++..+|+..
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999999999999999843 33678899999999999763
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2.5e-25 Score=222.55 Aligned_cols=262 Identities=13% Similarity=0.112 Sum_probs=195.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 274 DYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 352 (608)
.+..|+|.+|+..++++...+|++ ......++.+|..+|++++|+..++. .+|....++..++..+...|++++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555444444443 23444445555555555555544433 13333344444555555555555555
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG--GADSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
+.++ +++.. +|++ +.++..+|.++...|++++|+..
T Consensus 86 ~~l~-----------------------------------------~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 86 AELD-----------------------------------------REMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp HHHH-----------------------------------------HHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHH-----------------------------------------HHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 5554 44443 2444 57889999999999999999999
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~ 510 (608)
|++ |+ +..++..+|.++..+|++++|+..|+++++.+|++....... ....++..
T Consensus 124 l~~-----~~----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~ 178 (291)
T 3mkr_A 124 LHQ-----GD----------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAG 178 (291)
T ss_dssp HTT-----CC----------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHC
T ss_pred HhC-----CC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhC
Confidence 998 43 388999999999999999999999999999999876443210 12233445
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA-SMQDY 589 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~ 589 (608)
.|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++ +..++
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999976 57899
Q ss_pred HHHHHhCCCCHHHHHH
Q 040048 590 EILKKEAPDDEEVDQA 605 (608)
Q Consensus 590 ~~al~l~P~~~~~~~~ 605 (608)
+++++++|+++.+...
T Consensus 259 ~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 259 SQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCChHHHHH
Confidence 9999999999988754
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1e-25 Score=215.28 Aligned_cols=212 Identities=18% Similarity=0.242 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++++++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
++...+ ... .
T Consensus 82 ~~~~~~---------~~~-~------------------------------------------------------------ 91 (217)
T 2pl2_A 82 AYVALY---------RQA-E------------------------------------------------------------ 91 (217)
T ss_dssp HHHHHH---------HTC-S------------------------------------------------------------
T ss_pred HHHHhh---------hhh-h------------------------------------------------------------
Confidence 876541 000 0
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
. .....|++++|+..|+++++++|++..++.
T Consensus 92 ------------------------------~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~---------- 122 (217)
T 2pl2_A 92 ------------------------------D---------RERGKGYLEQALSVLKDAERVNPRYAPLHL---------- 122 (217)
T ss_dssp ------------------------------S---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHH----------
T ss_pred ------------------------------h---------hcccccCHHHHHHHHHHHHHhCcccHHHHH----------
Confidence 0 112347899999999999999999998886
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
.+|.++...|++++|+..|+++++++ +++.+++++|.++..+|++++|+..|+++++++|+++.++..+|.++..+|
T Consensus 123 --~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 123 --QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred --HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 89999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 040048 581 KWEASMQDYEILKK 594 (608)
Q Consensus 581 ~~~~A~~~~~~al~ 594 (608)
++++|+..|+++..
T Consensus 200 ~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 200 KAEEAARAAALEHH 213 (217)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998753
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=9.8e-26 Score=215.42 Aligned_cols=205 Identities=20% Similarity=0.158 Sum_probs=145.2
Q ss_pred ccccccCCCCCCCCCCcchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 040048 233 QNHYNYNPPKPASSSSAEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA 310 (608)
Q Consensus 233 ~~~y~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 310 (608)
..++..+..+...+..++|...++..+ .|.++++++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 334444444445566677888777764 478999999999999999999999999999999999999999999999987
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHH
Q 040048 311 LGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWN 390 (608)
Q Consensus 311 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (608)
++.. ... .+...|++++|+..|++++. ++|++
T Consensus 86 ~~~~-------------~~~----------~~~~~g~~~~A~~~~~~al~-~~P~~------------------------ 117 (217)
T 2pl2_A 86 LYRQ-------------AED----------RERGKGYLEQALSVLKDAER-VNPRY------------------------ 117 (217)
T ss_dssp HHHT-------------CSS----------HHHHHHHHHHHHHHHHHHHH-HCTTC------------------------
T ss_pred hhhh-------------hhh----------hcccccCHHHHHHHHHHHHH-hCccc------------------------
Confidence 6210 010 12233555555555555544 33322
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHH
Q 040048 391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFED 470 (608)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 470 (608)
..++..+|.++...|++++
T Consensus 118 -------------------------------------------------------------~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 118 -------------------------------------------------------------APLHLQRGLVYALLGERDK 136 (217)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHcCChHH
Confidence 6677778888888888888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
|+..|+++++++ +++.++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 137 A~~~~~~al~~~-~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 137 AEASLKQALALE-DTPEIRS------------ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHhcc-cchHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 888888888888 7777665 788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 040048 551 AIEDCNAAL 559 (608)
Q Consensus 551 A~~~~~~al 559 (608)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 888887753
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=2.9e-23 Score=223.54 Aligned_cols=311 Identities=12% Similarity=0.042 Sum_probs=259.4
Q ss_pred chhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHH
Q 040048 250 EPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFEC 321 (608)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~ 321 (608)
+|..+++......++.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 97 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 97 QAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 345566666566788888889988888 78899999999888775 478888888988887 78889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH----hhcHHHHH
Q 040048 322 REAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR----TRDWNTLI 393 (608)
Q Consensus 322 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~ 393 (608)
+++++. .++.+++.+|.+|.. .+++++|+.+|++++. .. + ..+++.++..+.. .+++++|+
T Consensus 175 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~--~------~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 175 SKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG--D------ELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT--C------HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC--C------HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 888875 468888889998888 8889999999988865 32 2 3466777777776 78899999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc----
Q 040048 394 QETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC---- 465 (608)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~---- 465 (608)
..++++++.+. +..+..+|.+|.. .+++++|+.+|+++.+.. +..+++.+|.+|...
T Consensus 244 ~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------------~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 244 VLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------------NSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp HHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHcCCCCC
Confidence 99999887643 5678888999888 889999999999987652 378888999999887
Q ss_pred -CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 040048 466 -GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA---KFSEAAAAYGDGLGLDPYNSVLLCNRAAC 541 (608)
Q Consensus 466 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~ 541 (608)
+++++|+.+|+++++.. +..++. .+|.++...| ++++|+.+|+++++. .++.+++++|.+
T Consensus 309 ~~~~~~A~~~~~~a~~~~--~~~a~~------------~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG--DATAQA------------NLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNA 372 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHH------------HHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC--CHHHHH------------HHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 89999999999998763 444443 8899998866 899999999999987 679999999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHh
Q 040048 542 RSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPD---DEEVDQAL 606 (608)
Q Consensus 542 ~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~---~~~~~~~L 606 (608)
|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..|+ ++.+...|
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHH
Confidence 999 89999999999999986 468999999999999 89999999999999999954 77776655
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=4.1e-25 Score=223.42 Aligned_cols=250 Identities=17% Similarity=0.205 Sum_probs=203.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++. .+|.+ ...+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~------~~~~~ 93 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKD------IAVHA 93 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC------HHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcCC------HHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999988 77766 34444
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
.++.++...|++++|+..+++++...|.... .+..+. ...++ ......
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~-----------~~~~~~ 141 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ-LGSVNL--------------------QADVD-----------IDDLNV 141 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT-C-----------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-HHHHHh--------------------HHHHH-----------HHHHHH
Confidence 5555555555555555555555555444321 000000 00000 111112
Q ss_pred H-HH-HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHH
Q 040048 458 R-AQ-VNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLL 535 (608)
Q Consensus 458 l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 535 (608)
+ +. ++...|++++|+..++++++..|.+..++. .+|.++...|++++|+.+|++++..+|+++.++
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 209 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA------------SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 3 44 578889999999999999999999887775 899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
..+|.++...|++++|+..|+++++..|++..++..+|.++..+|++++|+.+|++++++.|+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=2.5e-25 Score=233.41 Aligned_cols=292 Identities=15% Similarity=0.090 Sum_probs=231.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNKTAALIALGRLLEAVFECREAIRI------EPHYH 332 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~ 332 (608)
.+..++.+|..++..|++++|+.+|+++++..|++. .++..+|.+|...|++++|+.+|++++++ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 456788999999999999999999999999999986 57999999999999999999999999987 56667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc-----------------HHHHHHH
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD-----------------WNTLIQE 395 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~A~~~ 395 (608)
.++..+|.+|...|++++|+.+|++++. +.+...........+..++.++...|+ +++|+..
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLT-LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999999977 432222233345566666666666666 5555555
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI 475 (608)
Q Consensus 396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (608)
+++++.. .+.... ......++..+|.++...|++++|+.+|
T Consensus 206 ~~~al~~-----------------------------------~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 206 YQENLKL-----------------------------------MRDLGD----RGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHH-----------------------------------HHHHTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH-----------------------------------HHHcCC----HHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5444332 110000 0012678889999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHH
Q 040048 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFE 549 (608)
Q Consensus 476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 549 (608)
++++.+.+....... ....+..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|+++
T Consensus 247 ~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 247 QERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 999988765333111 12345689999999999999999999999876643 678899999999999999
Q ss_pred HHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 550 KAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 550 ~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
+|+.+|++++.+.+. ...++..+|.+|..+|++++|+.+|++++++.+...
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 999999999987543 256889999999999999999999999999877543
No 32
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=6.2e-25 Score=222.20 Aligned_cols=290 Identities=15% Similarity=0.101 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNK----ASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHR 333 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~ 333 (608)
...++..|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+.++++++.+ .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4578889999999999999999999999999998 467889999999999999999999999887 344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--------------------HHHHH
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--------------------WNTLI 393 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~A~ 393 (608)
++..+|.+|...|++++|+..+++++. +.+...........+..++.++...|+ +++|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLD-ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 899999999999999999999999987 544433333345566666677777676 55555
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048 394 QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA 473 (608)
Q Consensus 394 ~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (608)
..+++++... ...- ..+ ....++..+|.++...|++++|+.
T Consensus 164 ~~~~~a~~~~----------------------------~~~~-~~~----------~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 164 DLYEENLSLV----------------------------TALG-DRA----------AQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHH----------------------------HHHT-CHH----------HHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH----------------------------HhcC-CHH----------HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5555444320 0000 000 126788899999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCC
Q 040048 474 AIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQ 547 (608)
Q Consensus 474 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 547 (608)
.+++++.+.+...... .....+..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|+
T Consensus 205 ~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 9999998765433211 113345689999999999999999999999876544 6788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 548 FEKAIEDCNAALNVRPGY------SKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 548 ~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
+++|+.+|++++.+.+.. ..++..+|.+|..+|++++|..+|++++++.+..
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999875432 5688999999999999999999999999988754
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.8e-22 Score=217.43 Aligned_cols=311 Identities=13% Similarity=0.029 Sum_probs=270.4
Q ss_pred CcchhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 040048 248 SAEPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVF 319 (608)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 319 (608)
..+|..+++......++++++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.
T Consensus 59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 136 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVK 136 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34456666666667889999999999999 99999999999999875 578899999999999 899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHH----hhcHHH
Q 040048 320 ECREAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKR----TRDWNT 391 (608)
Q Consensus 320 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 391 (608)
+|+++.+. .++.+++.||.+|.. .+++++|+.+|+++++ . .+ ..+++.++..+.. .+++++
T Consensus 137 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~--~~------~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 137 WFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-Q--GN------VWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T--TC------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C--CC------HHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999875 578999999999998 8899999999999976 3 23 5678888888888 899999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHH----cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLK----LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA--- 464 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~--- 464 (608)
|+..|+++++.+. +..+..+|.+|.. .+++++|+.+|+++.+.. +..+++.+|.+|..
T Consensus 206 A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 206 SAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG------------NSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHCCCC
Confidence 9999999998753 5788999999997 899999999999998753 37889999999999
Q ss_pred -cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 040048 465 -CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ-----AKFSEAAAAYGDGLGLDPYNSVLLCNR 538 (608)
Q Consensus 465 -~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~l 538 (608)
.+++++|+.+|+++.+. .+..+.. .+|.++... +++++|+.+|+++++. .++.+++.+
T Consensus 271 ~~~d~~~A~~~~~~a~~~--~~~~a~~------------~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 334 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQ--GNSDGQY------------YLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANL 334 (490)
T ss_dssp SSCCHHHHHHHHHHHHTT--TCHHHHH------------HHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHH------------HHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHH
Confidence 99999999999999865 4555554 889999998 9999999999999986 568899999
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 539 AACRSKLG---QFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 539 a~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
|.+|...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.++..|
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 99999977 899999999999987 679999999999999 899999999999999874 46555444
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=4.7e-25 Score=228.26 Aligned_cols=254 Identities=9% Similarity=0.005 Sum_probs=219.0
Q ss_pred CccCCCCCCCCc--ccccccccc--CCCcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHHHHHHHHHHcCC-H
Q 040048 208 NTNKNNNRYPNS--VMGNVVKKQ--NDHPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLKIMGNEDYKAGN-F 280 (608)
Q Consensus 208 ~~~~~~~~~~~a--~lg~i~~~~--~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~-~ 280 (608)
.++..+|++..+ .+|.++... +++| ...+..+ +.|.++.+|+.+|.++...|+ +
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~A-------------------l~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~ 148 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERA-------------------FKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHH-------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHH-------------------HHHHHHHHHhCccCHHHHHHHHHHHHHcccCH
Confidence 346667777666 677766554 3444 4444433 358899999999999999997 9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 281 AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+.+|++++.
T Consensus 149 ~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048 361 EADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440 (608)
Q Consensus 361 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 440 (608)
++|.+
T Consensus 229 -l~P~~-------------------------------------------------------------------------- 233 (382)
T 2h6f_A 229 -EDVRN-------------------------------------------------------------------------- 233 (382)
T ss_dssp -HCTTC--------------------------------------------------------------------------
T ss_pred -hCCCC--------------------------------------------------------------------------
Confidence 66655
Q ss_pred ccccccCCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC--
Q 040048 441 ETTRFFGPIGNANLLVVRAQVNLA-CGRFEDA-----LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA-- 512 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g-- 512 (608)
..+|..+|.++.. .|.+++| +.+|++++.++|++..+|. .+|.++...|
T Consensus 234 -----------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~------------~l~~ll~~~g~~ 290 (382)
T 2h6f_A 234 -----------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN------------YLKGILQDRGLS 290 (382)
T ss_dssp -----------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHTTTCGG
T ss_pred -----------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHccCcc
Confidence 5666667777766 4443666 6999999999999999886 8899999888
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHc
Q 040048 513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG--------Q-FEKAIEDCNAA-LNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~la~~~~~~ 579 (608)
++++|+..+.++ +.+|++..++..+|.+|..+| + +++|+++|+++ ++++|.....|..++..+..+
T Consensus 291 ~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 291 KYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp GCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 699999999998 999999999999999999985 3 59999999999 999999999999999888764
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=4.9e-22 Score=216.19 Aligned_cols=188 Identities=9% Similarity=-0.006 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHH-------cCChH-------HHHHHhhcCCC-CCCcccccccCCCCcHHHH
Q 040048 391 TLIQETRAAIAGGADSAPQIYALQAEALLK-------LHKHQ-------EADETLKNGPN-FDVDETTRFFGPIGNANLL 455 (608)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~-------~g~~~-------eA~~~l~~al~-~~p~~~~~~~~~~~~~~~~ 455 (608)
.++..|++++...|.+ +.+|..+|..+.. .|+++ +|+..|+++++ ..|+. ..+|
T Consensus 256 ~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~----------~~l~ 324 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----------MLLY 324 (530)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----------HHHH
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----------HHHH
Confidence 5677899999988877 6899999999886 79987 99999999997 78874 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHH
Q 040048 456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNK-EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVL 534 (608)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 534 (608)
..+|.++...|++++|...|+++++..|.+. .+|. .+|.++...|++++|+.+|+++++..|.....
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI------------QYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHH------------HHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 9999999999999999999999999999875 3554 77888889999999999999999998887777
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 040048 535 LCNRAAC-RSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 535 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 601 (608)
+...+.+ +...|++++|+..|+++++..|+++.+|..++.++...|++++|..+|++++...|.+++
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7776665 446899999999999999999999999999999999999999999999999998776654
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=224.56 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=244.8
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHH
Q 040048 296 NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH----RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAK 371 (608)
Q Consensus 296 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~ 371 (608)
.....+..+|.++...|++++|+.+|++++++.|++. .++..+|.+|...|++++|+..|++++. +.+.......
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHhccccHH
Confidence 3456789999999999999999999999999999984 6899999999999999999999999876 4333223345
Q ss_pred HHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHcCC--------------------hHH
Q 040048 372 SLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD-----SAPQIYALQAEALLKLHK--------------------HQE 426 (608)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~la~~~~~~g~--------------------~~e 426 (608)
....+..++.++...|++++|+..+++++...+. ....++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 5788999999999999999999999999986442 224588999999999999 999
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGN 506 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~ 506 (608)
|+..+++++.+.+..... .....++..+|.++...|++++|+..+++++.+.+....... .+..+..+|.
T Consensus 166 A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~ 235 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDR----AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHH
Confidence 999999887653221110 112678999999999999999999999999988765443221 1334569999
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 040048 507 ALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------SKARLRRAD 574 (608)
Q Consensus 507 ~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~ 574 (608)
++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999999999999999886654 6789999999999999999999999999985543 678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 575 CFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+|..+|++++|+.+|++++++.+.
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998543
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=8.1e-24 Score=204.49 Aligned_cols=221 Identities=19% Similarity=0.145 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..+..++.+|..++..|++++|+.+|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
+...|++++|+..|++++. ..|.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~-~~~~~------------------------------------------------------- 124 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALR-AGMEN------------------------------------------------------- 124 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HTCCS-------------------------------------------------------
T ss_pred HHHhccHHHHHHHHHHHHH-hCCCC-------------------------------------------------------
Confidence 9999998888888888765 32222
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
..++..+|.++...|++++|+..+++++...|.+..++.
T Consensus 125 ------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------- 163 (243)
T 2q7f_A 125 ------------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF----------- 163 (243)
T ss_dssp ------------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH-----------
T ss_pred ------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH-----------
Confidence 556667788888888888888888888888887776654
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
.+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|+++++++|++..++..++.+....+
T Consensus 164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 778888888888888888888888888888888888888888888888888888888888888888777776655443
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=2.3e-22 Score=198.74 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVFECREAIRIEPHYHRAHH 336 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~ 336 (608)
+.++++++.+|..++..|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 56788899999999999999999999999888 7778888999999998 999999999999998875 788888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048 337 RLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412 (608)
Q Consensus 337 ~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 412 (608)
.+|.+|.. .+++++|+..|++++. ..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~------------------------------------------------- 108 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACD-LK------------------------------------------------- 108 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT-------------------------------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHH-cC-------------------------------------------------
Confidence 89998888 8888888888887754 10
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHH
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
+..++..+|.+|.. .+++++|+.+|+++++.. +..+
T Consensus 109 --------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 109 --------------------------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred --------------------------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 15666667777777 777888888888877764 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 040048 489 NMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALN 560 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 560 (608)
+. .+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 149 ~~------------~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 149 CT------------ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HH------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HH------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 32 67777777 78888888888888776 356777888888888 8888888888888887
Q ss_pred cCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 561 VRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 561 ~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
..| +.+++.+|.+|.. .+++++|+.+|++++++.|++...+
T Consensus 215 ~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 215 LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 755 7778888888887 8888888888888888877665544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=8.7e-25 Score=215.55 Aligned_cols=248 Identities=10% Similarity=-0.042 Sum_probs=197.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 040048 273 EDYKAGNFAEALALYDAAISID----PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEV 348 (608)
Q Consensus 273 ~~~~~g~~~~Al~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 348 (608)
.+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+|...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3444578899999999998873 455778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH
Q 040048 349 EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD 428 (608)
Q Consensus 349 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~ 428 (608)
++|+..|++++. ++|.+ ..++..+|.++...|++++|+
T Consensus 94 ~~A~~~~~~al~-~~~~~-----------------------------------------~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 94 DAAYEAFDSVLE-LDPTY-----------------------------------------NYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHHHHHHHHH-HCTTC-----------------------------------------THHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHh-cCccc-----------------------------------------cHHHHHHHHHHHHhccHHHHH
Confidence 999998888877 55554 345666667777777777777
Q ss_pred HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508 (608)
Q Consensus 429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~ 508 (608)
..|+++++..|++ ......++ +....|++++|+..+++++...|.+...+ .++.++
T Consensus 132 ~~~~~a~~~~~~~----------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~ 187 (275)
T 1xnf_A 132 DDLLAFYQDDPND----------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGW-------------NIVEFY 187 (275)
T ss_dssp HHHHHHHHHCTTC----------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHH-------------HHHHHH
T ss_pred HHHHHHHHhCCCC----------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHH-------------HHHHHH
Confidence 7777776666653 33333333 34667999999999999999999886654 567788
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA 584 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 584 (608)
...+++++|+..+++++...|.. +.++..+|.++...|++++|+.+|++++.++|++... .+.++..+|++++
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQ 264 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHh
Confidence 88999999999999999887743 6899999999999999999999999999999977443 3778899999999
Q ss_pred HHHHH
Q 040048 585 SMQDY 589 (608)
Q Consensus 585 A~~~~ 589 (608)
|++.|
T Consensus 265 a~~~~ 269 (275)
T 1xnf_A 265 DQDDL 269 (275)
T ss_dssp C----
T ss_pred hHHHH
Confidence 99887
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=3.9e-23 Score=199.67 Aligned_cols=212 Identities=17% Similarity=0.151 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHL 377 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 377 (608)
+..++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++. ..|.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~------------ 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE-LDSS------------ 89 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCc------------
Confidence 456888899999999999999999999999999999999999999999999999988888765 2222
Q ss_pred HHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH
Q 040048 378 NKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV 457 (608)
Q Consensus 378 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 457 (608)
...++..
T Consensus 90 -------------------------------------------------------------------------~~~~~~~ 96 (243)
T 2q7f_A 90 -------------------------------------------------------------------------AATAYYG 96 (243)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred -------------------------------------------------------------------------chHHHHH
Confidence 2678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN 537 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 537 (608)
+|.++...|++++|+..|+++++..|.+..++. .+|.++...|++++|+.+|++++...|.+..++..
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY------------MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHH------------HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHH
Confidence 999999999999999999999999999988765 88999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|.++...|++++|+..|++++...|++..++..+|.+|...|++++|+.+|+++++++|++..++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987764
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=9.4e-23 Score=198.54 Aligned_cols=209 Identities=15% Similarity=0.105 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
+.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 66788888888888888888888888888888888888888888888888888888888888888877777777777777
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCC
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHK 423 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~ 423 (608)
..|++++|+..|++++. . +
T Consensus 117 ~~g~~~~A~~~~~~~~~-~-~----------------------------------------------------------- 135 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-D-T----------------------------------------------------------- 135 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-C-T-----------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHh-C-c-----------------------------------------------------------
Confidence 77777777777777653 0 0
Q ss_pred hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Q 040048 424 HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARS 503 (608)
Q Consensus 424 ~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 503 (608)
..|. ...++..+|.++...|++++|+..|+++++..|.+..++. .
T Consensus 136 -------------~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~ 180 (252)
T 2ho1_A 136 -------------LYPE----------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL------------E 180 (252)
T ss_dssp -------------TCTT----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH------------H
T ss_pred -------------cCcc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH------------H
Confidence 0111 1455555666666666666666666665555555544433 4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 040048 504 NGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA 568 (608)
Q Consensus 504 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 568 (608)
+|.++...|++++|+.+|++++...|.+..++..++.++...|++++|+.++++++++.|+++.+
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 45555555555555555555555555555555555555555555555555555555555544443
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.9e-22 Score=201.51 Aligned_cols=250 Identities=14% Similarity=0.092 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHHRLANL 341 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la~~ 341 (608)
.+....++.+++..|++++|+..++. .+|....++..++..+...|++++|+..+++++.. +|+++.+++.+|.+
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 35678889999999999999998866 25556778889999999999999999999999875 69999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
+...|++++|+..|++ |.+ ..++..+|.++..+
T Consensus 111 ~~~~g~~~~Al~~l~~------~~~-----------------------------------------~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ------GDS-----------------------------------------LECMAMTVQILLKL 143 (291)
T ss_dssp HHHTTCHHHHHHHHTT------CCS-----------------------------------------HHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhC------CCC-----------------------------------------HHHHHHHHHHHHHC
Confidence 9999999999999976 333 34566677777777
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA--QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 499 (608)
|++++|+..|+++++.+|++ ....+..+ .++...|++++|+..|+++++..|++..++.
T Consensus 144 g~~~~A~~~l~~~~~~~p~~----------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~--------- 204 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDA----------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN--------- 204 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH---------
T ss_pred CCHHHHHHHHHHHHhhCcCc----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH---------
Confidence 77777777777777776653 22222222 3344568999999999999999999988876
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK-AIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++ +..+++++++++|+++.+. .+..+
T Consensus 205 ---~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~ 277 (291)
T 3mkr_A 205 ---GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAK 277 (291)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHH
Confidence 899999999999999999999999999999999999999999999976 5789999999999998764 35666
Q ss_pred cCCHHHHHHHH
Q 040048 579 IEKWEASMQDY 589 (608)
Q Consensus 579 ~g~~~~A~~~~ 589 (608)
.+.|+++..-|
T Consensus 278 ~~~fd~~~~~~ 288 (291)
T 3mkr_A 278 ENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66677766555
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=3.5e-22 Score=190.18 Aligned_cols=104 Identities=18% Similarity=0.072 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYSKARLRRADCFAKIEK 581 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~ 581 (608)
.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|++++...| ++..++..++.++...|+
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 4555555555555555555555555555555566666666666666666666666666666 566666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 582 WEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+++|..+++.+.+.+|+++.+...|
T Consensus 198 ~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 198 AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 6666666666666666666655444
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=4e-23 Score=191.33 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
+.+|..+|.++...|++++|+..|+++++++|++ ..++..+|.++...|++++|+..+.+++...|++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN----------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH
Confidence 5789999999999999999999999999999985 899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
++. .+|.++...+++++|+..+.+++..+|.+..++..+|.++..+|++++|++.|+++++++|+++.
T Consensus 75 ~~~------------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 75 AYY------------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp HHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 876 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
+|+.+|.+|..+|++++|+.+|+++++++|+++....
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~l 179 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYEL 179 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHH
Confidence 9999999999999999999999999999998876543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=4.9e-23 Score=202.86 Aligned_cols=241 Identities=15% Similarity=0.054 Sum_probs=196.9
Q ss_pred cchhHHHHhhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCCHHHHHHHHH
Q 040048 249 AEPTSLCRALS--TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS----YRSNKTAALIALGRLLEAVFECR 322 (608)
Q Consensus 249 ~~a~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~ 322 (608)
++|...+...+ .|.++.+++.+|.+++..|++++|+.+|++++. .|.++. ++..+|.++...|++++|+.+|+
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 33444554442 366788999999999999999999999999999 444443 49999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHc
Q 040048 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAG 402 (608)
Q Consensus 323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 402 (608)
++++++|++..++..+|.+|...|++++|+..|++++. .+|.+
T Consensus 99 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~------------------------------------ 141 (272)
T 3u4t_A 99 AAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-PTTTD------------------------------------ 141 (272)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-SSCCC------------------------------------
T ss_pred HHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-cCCCc------------------------------------
Confidence 99999999999999999999999999999999999999 77776
Q ss_pred CCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 040048 403 GADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR---FEDALAAIQKAA 479 (608)
Q Consensus 403 ~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al 479 (608)
+.++..+|......+++++|+..|+++++..|++ ..++..+|.++...|+ +++|+..|++++
T Consensus 142 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 142 -----PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----------YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 3556666733444457888888888888777764 7889999999999999 999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048 480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546 (608)
Q Consensus 480 ~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 546 (608)
+.....+... ......++..+|.++...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 207 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKY----KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGG----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccc----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9874443321 11235778899999999999999999999999999999999998887765543
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=7.4e-23 Score=219.16 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=192.7
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL-LEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFK 356 (608)
Q Consensus 278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 356 (608)
+.+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|+.+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467788888888888888899999999999999999 999999999999999999999999999999999999999888
Q ss_pred HhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 357 HAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 357 ~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
+++. ++|+
T Consensus 162 ~al~-~~p~----------------------------------------------------------------------- 169 (474)
T 4abn_A 162 GALT-HCKN----------------------------------------------------------------------- 169 (474)
T ss_dssp HHHT-TCCC-----------------------------------------------------------------------
T ss_pred HHHh-hCCC-----------------------------------------------------------------------
Confidence 8877 4443
Q ss_pred CCCcccccccCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 040048 437 FDVDETTRFFGPIGNANLLVVRAQVNLAC---------GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA 507 (608)
Q Consensus 437 ~~p~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~ 507 (608)
..++..+|.++... |++++|+..|+++++++|++..++. .+|.+
T Consensus 170 ---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~ 222 (474)
T 4abn_A 170 ---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY------------ILGNA 222 (474)
T ss_dssp ---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHH
T ss_pred ---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHH
Confidence 34445556666666 8999999999999999999998886 89999
Q ss_pred HHHc--------CCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 508 LFKQ--------AKFSEAAAAYGDGLGLDP---YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 508 ~~~~--------g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+... |++++|+.+|+++++++| .++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999 999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 040048 577 AKIEKWEASMQDYEIL 592 (608)
Q Consensus 577 ~~~g~~~~A~~~~~~a 592 (608)
..+|++++|++.+.+.
T Consensus 303 ~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 303 EFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999876553
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2.8e-21 Score=188.03 Aligned_cols=218 Identities=16% Similarity=0.096 Sum_probs=201.7
Q ss_pred hcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048 292 SIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370 (608)
Q Consensus 292 ~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 370 (608)
..+|.. +.+++.+|.++...|++++|+.+|+++++.+|++..++..+|.+|...|++++|+..|++++. ..|.+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~---- 104 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA-SDSRN---- 104 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTC----
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCc----
Confidence 345665 788999999999999999999999999999999999999999999999999999999999987 66654
Q ss_pred HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG 450 (608)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~ 450 (608)
T Consensus 105 -------------------------------------------------------------------------------- 104 (252)
T 2ho1_A 105 -------------------------------------------------------------------------------- 104 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAK--QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD 528 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 528 (608)
..++..+|.++...|++++|+.+|++++. ..|.+..++. .+|.++...|++++|+.+|++++...
T Consensus 105 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 105 -ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE------------NLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56677788999999999999999999999 6676666654 89999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 529 PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|.+..++..+|.++...|++++|+.+|+++++..|++..++..++.++...|++++|..+++++++++|+++.+...+.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987764
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-22 Score=197.01 Aligned_cols=208 Identities=15% Similarity=0.173 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 334 (608)
.++.+++.+|.++...|++++|+.+|+++++++|+. +.++..+|.++...|++++|+.+|++++.+.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---- 111 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT---- 111 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----
Confidence 678899999999999999999999999999998877 789999999999999999999999999999987
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ 414 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l 414 (608)
+.++...|++++|+..+++++. .+|.+
T Consensus 112 ----~~~~~~~~~~~~a~~~~~~~~~-~~~~~------------------------------------------------ 138 (258)
T 3uq3_A 112 ----ADILTKLRNAEKELKKAEAEAY-VNPEK------------------------------------------------ 138 (258)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH-CCHHH------------------------------------------------
T ss_pred ----hHHHHHHhHHHHHHHHHHHHHH-cCcch------------------------------------------------
Confidence 4567777788888888887765 44433
Q ss_pred HHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040048 415 AEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRK 494 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 494 (608)
..++..+|.++...|++++|+..|++++...|.+..++.
T Consensus 139 -------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---- 177 (258)
T 3uq3_A 139 -------------------------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS---- 177 (258)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred -------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH----
Confidence 677788899999999999999999999999999887765
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHH
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR------PGYSKA 568 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a 568 (608)
.+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|++++++. |++..+
T Consensus 178 --------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 178 --------NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp --------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred --------HHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 889999999999999999999999999999999999999999999999999999999998 888888
Q ss_pred HHHHHHH
Q 040048 569 RLRRADC 575 (608)
Q Consensus 569 ~~~la~~ 575 (608)
+..++.+
T Consensus 250 ~~~l~~~ 256 (258)
T 3uq3_A 250 DQLYYKA 256 (258)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8777765
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=9.9e-22 Score=198.19 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 040048 281 AEALALYDAAISIDPNKASYRSNKTAALIA-------LGRL-------LEAVFECREAIR-IEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 281 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~eA~~~~~~al~-~~p~~~~~~~~la~~~~~~ 345 (608)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChH
Q 040048 346 GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQ 425 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~ 425 (608)
|++++|+..|++++. +.|.+. ..+|..+|.++...|+++
T Consensus 113 ~~~~~A~~~~~~al~-~~p~~~----------------------------------------~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA-IEDIDP----------------------------------------TLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp TCHHHHHHHHHHHHT-SSSSCT----------------------------------------HHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHh-ccccCc----------------------------------------cHHHHHHHHHHHHhcCHH
Confidence 999999999999998 777651 125666677777777777
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSN 504 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~l 504 (608)
+|+..|+++++..|.. ..++...+.+... .|++++|+..|+++++..|++..++. .+
T Consensus 152 ~A~~~~~~a~~~~p~~----------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~ 209 (308)
T 2ond_A 152 SGRMIFKKAREDARTR----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL------------AY 209 (308)
T ss_dssp HHHHHHHHHHTSTTCC----------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH------------HH
T ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH------------HH
Confidence 7777777777776653 4556555555433 79999999999999999999988876 88
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 505 GNALFKQAKFSEAAAAYGDGLGL---DP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 505 g~~~~~~g~~~eA~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
|..+...|++++|+.+|++++.. .| ....+|..++.++...|++++|...++++++..|++..... ++.+
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~----- 283 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL----- 283 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----
Confidence 89999999999999999999995 45 37889999999999999999999999999999998543321 1222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 581 KWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
....+.+.++|++++..+.|
T Consensus 284 ------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 284 ------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp ------HTTTCBTTBCSSCHHHHHTT
T ss_pred ------HHHHHhcccCCCCHHHHHhc
Confidence 11226777999999988876
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=5e-21 Score=182.16 Aligned_cols=216 Identities=12% Similarity=0.007 Sum_probs=190.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++.+++.+|.+++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|++++..+|++..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 341 LYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 341 ~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
++... |++++|+..|++++. . |.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~-~~------------------------------------------------------ 108 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-D-PT------------------------------------------------------ 108 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-S-TT------------------------------------------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHc-C-cC------------------------------------------------------
Confidence 99999 999999998888754 1 11
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 499 (608)
.|. ...++..+|.++...|++++|+..|+++++..|.+..++.
T Consensus 109 ------------------~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------- 151 (225)
T 2vq2_A 109 ------------------YPT----------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK--------- 151 (225)
T ss_dssp ------------------CSC----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH---------
T ss_pred ------------------Ccc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH---------
Confidence 111 2677888999999999999999999999999999877765
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDP-YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR 572 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 572 (608)
.+|.++...|++++|+.+|++++...| .+...+..++.++...|++++|..+++.+++..|+++.+...+
T Consensus 152 ---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 152 ---ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 889999999999999999999999999 8999999999999999999999999999999999998776554
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=6e-22 Score=183.31 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..++..+|.++...++++.|+..+.+++...|.+..++. .+|.++...|++++|+..|+++++++|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY------------KLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH------------HHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 344444555555555555555555566666666655554 55666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
+.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 6666666666666666666666666666666654
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1.8e-20 Score=179.83 Aligned_cols=144 Identities=10% Similarity=0.081 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY- 530 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~- 530 (608)
..++..+|.++...|++++|+..|+++++++|++...... .+..+..+|.++...|++++|+.+|+++++++|+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL-----YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH-----HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 3444445555555555555555555555566655543221 1223458999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 531 -NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 531 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
++.+++++|.+|...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|++.++...|.
T Consensus 151 ~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9999999999997655 456778888877775554 445566778899999999999999999999887663
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=6.1e-21 Score=183.12 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDP-NKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
+.+++.++.+|.+++..|+|++|+.+|+++++++| .+..+++.+|.++..+|++++|+.+|+++++++|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 56789999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
.+|..+|++++|+..|++++. ++|++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~-~~p~~ 109 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK-AVPGN 109 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HSTTC
T ss_pred HHHHHcccHHHHHHHHHHHHH-HCCCc
Confidence 999999999999999999988 77776
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=1.6e-21 Score=202.84 Aligned_cols=315 Identities=10% Similarity=-0.052 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CChhHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDP---NKASYR--SNK--TAALIALGRLLEAV-----------FECREAI 325 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~eA~-----------~~~~~al 325 (608)
.....+-...+...+++++|..+++++.+.-+ .+.... +.+ .......+++..+. ..++++-
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 34455566677899999999999999866432 233332 222 22233344444444 5555533
Q ss_pred hhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHH
Q 040048 326 RIEPHYHR------AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAA 399 (608)
Q Consensus 326 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 399 (608)
. .|.... .++.+|.++...|++++|+..|++++. +.............+..+|.++...|+++.|+..+.++
T Consensus 92 ~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 92 K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 333222 445599999999999999999999988 53332233445788999999999999999999999999
Q ss_pred HHcCCCC------hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 040048 400 IAGGADS------APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALA 473 (608)
Q Consensus 400 l~~~~~~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 473 (608)
++..+.. ...++..+|.++...|++++|+..|++++.+.+...... ....++..+|.+|...|++++|+.
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ----LMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9874332 245789999999999999999999999998765432111 125789999999999999999999
Q ss_pred HHHHHHHh-----C-CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHH
Q 040048 474 AIQKAAKQ-----D-SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-----PYNSVLLCNRAACR 542 (608)
Q Consensus 474 ~~~~al~~-----~-p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~ 542 (608)
+|++++.+ + |.... ++..+|.++...|++++|+.+|++++.+. |.....+..+|.++
T Consensus 246 ~~~~al~~~~~~~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQ------------AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999995 3 33323 33599999999999999999999999873 33344467899999
Q ss_pred HHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 543 SKLGQ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 543 ~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
...|+ +++|+..+++. ...|....++..+|.+|..+|++++|..+|++++++..
T Consensus 314 ~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999 88888888877 33445567889999999999999999999999998754
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=8.1e-20 Score=198.63 Aligned_cols=317 Identities=9% Similarity=-0.005 Sum_probs=251.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040048 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL 338 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 338 (608)
..|.+..+|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 358899999999984 7899999999999999999999999999999999999999999999999999999 67888888
Q ss_pred HH-HHHHcCCHHHHHH----HHHHhCCC--CCchhHHHHHHHHHHHHHhHHHHH---------hhcHHHHHHHHHHHHHc
Q 040048 339 AN-LYLRLGEVEKAIY----HFKHAGPE--ADQVDIAKAKSLQAHLNKCTDAKR---------TRDWNTLIQETRAAIAG 402 (608)
Q Consensus 339 a~-~~~~~g~~~~A~~----~~~~al~~--~~p~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~ 402 (608)
+. +....|++++|.+ .|++++.. .++.. ...|...+..... .|+++.|...|++++..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS------YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC------HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc------HHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 85 4456788777665 77776531 23333 2233333333332 68889999999999884
Q ss_pred CCCCh-HHHHHHHHHHH-------------HHcCChHHHH----------------------------------------
Q 040048 403 GADSA-PQIYALQAEAL-------------LKLHKHQEAD---------------------------------------- 428 (608)
Q Consensus 403 ~~~~~-~~~~~~la~~~-------------~~~g~~~eA~---------------------------------------- 428 (608)
|... ..++....... ...+++.+|.
T Consensus 160 -P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 160 -PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp -CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 5432 22332222111 0122344443
Q ss_pred --------------------HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHH
Q 040048 429 --------------------ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-------CGRFE-------DALAA 474 (608)
Q Consensus 429 --------------------~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~ 474 (608)
..|++++...|. ++.+|+.+|.++.. .|+++ +|+..
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~----------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH----------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 333333333333 48899999999886 79987 99999
Q ss_pred HHHHHH-hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 040048 475 IQKAAK-QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS-VLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 475 ~~~al~-~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~ 552 (608)
|+++++ ..|++..+|. .+|.++...|++++|..+|+++++..|.++ .+|..+|.++.+.|++++|+
T Consensus 309 ~~~Al~~~~p~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHTTTTCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 999997 8999988886 889999999999999999999999999985 69999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 553 EDCNAALNVRPGYSKARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
..|+++++..|.....+...+.+ +...|++++|..+|+++++.+|+++.++..+
T Consensus 377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~ 431 (530)
T 2ooe_A 377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY 431 (530)
T ss_dssp HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999888888777766 4469999999999999999999999988765
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.5e-20 Score=189.57 Aligned_cols=229 Identities=10% Similarity=-0.014 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh
Q 040048 315 LEAVFECREAIRIEPHYHRAHHRLANLYLRL-------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR 387 (608)
Q Consensus 315 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 387 (608)
++|+..|++++..+|+++.+|+.+|.++... |+++ ...+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~----------------------------------~~~~ 78 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN----------------------------------NAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh----------------------------------hccc
Confidence 7899999999999999999999999998754 4430 1112
Q ss_pred cHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH-HHHHHHHHHHHc
Q 040048 388 DWNTLIQETRAAIA-GGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN-LLVVRAQVNLAC 465 (608)
Q Consensus 388 ~~~~A~~~~~~al~-~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~-~~~~la~~~~~~ 465 (608)
.+++|+..|++++. ..|++ ..+|..+|.++...|++++|...|+++++..|.+ .. +|..+|.++...
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------PTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------THHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----------ccHHHHHHHHHHHHh
Confidence 33445555555555 34544 5688899999999999999999999999998874 54 899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF-KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK 544 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 544 (608)
|++++|+..|+++++..|....++. ..+.+.. ..|++++|+.+|+++++.+|+++.+|..+|.++..
T Consensus 148 ~~~~~A~~~~~~a~~~~p~~~~~~~------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDARTRHHVYV------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCCTHHHH------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999999999999998876654 3444433 37999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 545 LGQFEKAIEDCNAALNV---RPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
.|++++|+..|++++.. .|+ ...+|..++..+...|++++|...++++++.+|++.
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 99999999999999995 553 788999999999999999999999999999999854
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=4.9e-21 Score=188.52 Aligned_cols=229 Identities=16% Similarity=0.031 Sum_probs=196.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.++.+++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 120 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|...|++++|+..|++++. +.|.+... .... ......|++++|+..+.+++...|.... ...++.++...
T Consensus 121 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~------~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 190 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQ-DDPNDPFR------SLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGN 190 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCHHH------HHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTS
T ss_pred HHHhccHHHHHHHHHHHHH-hCCCChHH------HHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHh
Confidence 9999999999999999998 88887421 1112 2336679999999999999998887642 34478888899
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
++.++|+..+++++...|.... ....++..+|.++...|++++|+..|++++..+|++...
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------- 251 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAE------HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE------------- 251 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-------------
T ss_pred cCHHHHHHHHHHHhcccccccc------cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-------------
Confidence 9999999999999998765211 126889999999999999999999999999999987553
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAY 521 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~ 521 (608)
.+.++...|++++|+..|
T Consensus 252 --~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 --HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhhHHHH
Confidence 357888899999999887
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=2.4e-20 Score=198.35 Aligned_cols=299 Identities=14% Similarity=0.088 Sum_probs=235.6
Q ss_pred hHHHHhhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHH---HHHHHH
Q 040048 252 TSLCRALSTRMDPETLKIMGNEDYKAG-----NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEA---VFECRE 323 (608)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA---~~~~~~ 323 (608)
..+++..... ++++++.+|.+++..+ ++++|+.+|+++++. +++.+++.+|.+|...+...++ ...+.+
T Consensus 58 ~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 58 EATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 3333333333 7888999999777766 899999999999984 4566999999999988765544 444444
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhh---cHHHHHHHH
Q 040048 324 AIRIEPHYHRAHHRLANLYLRLGEV----EKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTR---DWNTLIQET 396 (608)
Q Consensus 324 al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~ 396 (608)
+.. +.++.+++.+|.+|...+.+ +++..+++.+.. .+|. +++.++.++...| ++++|+..|
T Consensus 135 a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~ 202 (452)
T 3e4b_A 135 WQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQM 202 (452)
T ss_dssp HHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHH
Confidence 443 34578999999999999854 455555666655 4443 6788899999999 999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHc----CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHH-H--HHcCCHH
Q 040048 397 RAAIAGGADSAPQIYALQAEALLKL----HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQV-N--LACGRFE 469 (608)
Q Consensus 397 ~~al~~~~~~~~~~~~~la~~~~~~----g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~ 469 (608)
+++.+.++... ..++.+|.+|... +++++|+.+|+++. |. ++.+++.+|.+ + ...++++
T Consensus 203 ~~aa~~g~~~a-~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g----------~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 203 EAGVSRGTVTA-QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG----------YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHTTCSCH-HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG----------STHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHHCCCHHH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC----------CHHHHHHHHHHHHhCCCCCCHH
Confidence 99999988773 5567889999766 79999999999998 54 38899999998 4 5789999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 040048 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA-----KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK 544 (608)
Q Consensus 470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 544 (608)
+|+.+|+++.+.. +..+.. .+|.+|. .| ++++|+.+|+++. +.++.+++++|.+|..
T Consensus 269 ~A~~~~~~Aa~~g--~~~A~~------------~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 269 QMMKYLDNGRAAD--QPRAEL------------LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHHHHHHHTT--CHHHHH------------HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC--CHHHHH------------HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 9999999998654 666654 8999998 56 9999999999999 8899999999999887
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 040048 545 ----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 545 ----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~ 599 (608)
..++++|+.+|+++.+. .++.+.++||.+|.. ..++++|..+|+++.+..+..
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 44999999999999874 568899999999985 469999999999999876543
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=3e-22 Score=213.06 Aligned_cols=298 Identities=13% Similarity=-0.000 Sum_probs=211.8
Q ss_pred hhHHHHhhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-----CHHHHHHHHH
Q 040048 251 PTSLCRALSTRMDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPNKASYRSNKTAALIALG-----RLLEAVFECR 322 (608)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~ 322 (608)
|..+++....+.++++++.+|.+++..|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+
T Consensus 22 A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~ 98 (452)
T 3e4b_A 22 AQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLK 98 (452)
T ss_dssp HHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence 455555555556777788888888888877 7888888888865 5677888888666655 6778888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH----HH
Q 040048 323 EAIRIEPHYHRAHHRLANLYLRLGEVEKA---IYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI----QE 395 (608)
Q Consensus 323 ~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~----~~ 395 (608)
++++.. ++.+++.||.+|...+..+++ ...+.++.. +. ...+++.++.++...+.+++++ ..
T Consensus 99 ~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~---~g------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 99 KAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA---AG------YPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH---HT------CTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---CC------CHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 887743 344788888888776654433 333333321 11 1456777888888887554444 44
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHcC---ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc----CCH
Q 040048 396 TRAAIAGGADSAPQIYALQAEALLKLH---KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC----GRF 468 (608)
Q Consensus 396 ~~~al~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~----g~~ 468 (608)
+..+...+| .+++.+|.+|...| ++++|+.+|+++.+..+.. +..++.+|.+|... +++
T Consensus 168 ~~~a~~~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~----------a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 168 CKAALNTTD----ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT----------AQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHTTTCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC----------HHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHcCCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCCCCCH
Confidence 444444444 38899999999999 9999999999999888764 77778999999766 799
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc
Q 040048 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNA-L--FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL 545 (608)
Q Consensus 469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 545 (608)
++|+.+|+++. |+++.++. .+|.+ + ...+++++|+.+|+++++. .++.+++++|.+|. .
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~------------~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWV------------SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHH------------HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHc---CCCHHHHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c
Confidence 99999999997 88888776 88988 4 5789999999999999965 48999999999998 6
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040048 546 G-----QFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 546 g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P 597 (608)
| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+...
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 6 9999999999999 8999999999999987 4499999999999988643
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=207.03 Aligned_cols=199 Identities=16% Similarity=0.177 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNF-AEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLA 339 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 339 (608)
+.++.+++.+|.++...|+| ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|+ ..++..+|
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg 177 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLS 177 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 57899999999999999999 99999999999999999999999999999999999999999999999999 79999999
Q ss_pred HHHHHc---------CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHH
Q 040048 340 NLYLRL---------GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQI 410 (608)
Q Consensus 340 ~~~~~~---------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 410 (608)
.+|..+ |++++|+..|++++. ++|++
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~-------------------------------------------- 212 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLD-------------------------------------------- 212 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTC--------------------------------------------
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCC--------------------------------------------
Confidence 999988 666666666655554 33332
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhC
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC--------GRFEDALAAIQKAAKQD 482 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~ 482 (608)
..+|..+|.+|... |++++|+..|+++++++
T Consensus 213 -----------------------------------------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 213 -----------------------------------------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 56677777777777 89999999999999999
Q ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 483 S---NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 483 p---~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
| .+..++. .+|.++...|++++|+.+|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 252 p~~~~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 252 RKASSNPDLHL------------NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGGGGCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcccCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9 8888776 89999999999999999999999999999999999999999999999999877553
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.6e-22 Score=198.77 Aligned_cols=251 Identities=18% Similarity=0.116 Sum_probs=190.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI----- 327 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 327 (608)
|..+.++..+|.+++..|++++|+.+|++++++ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999995 6667788999999999999999999999999987
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048 328 ---EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA 404 (608)
Q Consensus 328 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 404 (608)
.|....++..+|.+|...|++++|+..|++++. +. .+.. .+
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~---------------------------------~~~~--~~ 147 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-IR---------------------------------EKVL--GK 147 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HH---------------------------------HHHH--CT
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HH---------------------------------HHhc--CC
Confidence 355577899999999999999999999998764 10 0000 00
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQD-- 482 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 482 (608)
..|. ...++..+|.++...|++++|+.+|++++...
T Consensus 148 --------------------------------~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 148 --------------------------------DHPD----------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp --------------------------------TCHH----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CChH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0011 26778889999999999999999999998871
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC---------CC------HHHHHHHHHHHHH
Q 040048 483 ---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP---------YN------SVLLCNRAACRSK 544 (608)
Q Consensus 483 ---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---------~~------~~~~~~la~~~~~ 544 (608)
++.+.. ...+..+|.++...|++++|+.+|++++...+ .. ...+..++..+..
T Consensus 186 ~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 186 KLGPDDPNV---------AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp TSCTTCHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HhCCCCHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 112221 12335899999999999999999999997532 22 2344455566667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 545 LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 545 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
.+.+.+|+..+++++...|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 778888899999999999999999999999999999999999999999999885
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=3.5e-21 Score=201.72 Aligned_cols=255 Identities=16% Similarity=0.177 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYH 332 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~ 332 (608)
.+++.+|.+++..|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+ .+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 58999999999999999999999999988 5667788999999999999999999999999998 45567
Q ss_pred HHHHHHHHHHHHcCC-----------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048 333 RAHHRLANLYLRLGE-----------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395 (608)
Q Consensus 333 ~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 395 (608)
.++..+|.+|...|+ +++|+.+|++++. +.+........
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~-~~~~~~~~~~~----------------------- 222 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK-LMRDLGDRGAQ----------------------- 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH-HHHHHTCHHHH-----------------------
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH-HHHHcCCHHHH-----------------------
Confidence 799999999999999 8888888877755 22111111111
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI 475 (608)
Q Consensus 396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (608)
..++..+|.++...|++++|+.++++++.+.+...... ....++..+|.++...|++++|+.+|
T Consensus 223 ------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 223 ------------GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----AERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 34566677777777777777777777766554421111 12558899999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHHcCCHH
Q 040048 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACRSKLGQFE 549 (608)
Q Consensus 476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 549 (608)
++++.+.+....... ....+..+|.++...|++++|+.+|++++.+.+. ...++..+|.+|..+|+++
T Consensus 287 ~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 287 KRTLALAVELGEREV------EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999988765422211 1334568999999999999999999999987442 2568899999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 040048 550 KAIEDCNAALNVRPGY 565 (608)
Q Consensus 550 ~A~~~~~~al~~~p~~ 565 (608)
+|+.+|++++++.+..
T Consensus 361 ~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 361 RALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987653
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=8.4e-21 Score=211.43 Aligned_cols=170 Identities=18% Similarity=0.195 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 040048 408 PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 408 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
..++..+|.++..+|++++|+..|+++++++|++ ..++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 5788899999999999999999999999999985 899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK 567 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 567 (608)
++. ++|.++..+|++++|+++|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.
T Consensus 79 a~~------------nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 79 AYS------------NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp HHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 876 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 568 ARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 568 a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
++.++|.+|..+|++++|++.|++++++.|+.
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999999999999999987654
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=9.5e-21 Score=210.99 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++++|+++|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+|+.+|.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHhC
Q 040048 341 LYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al 359 (608)
+|..+|++++|++.|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555554444443
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=9.2e-21 Score=191.38 Aligned_cols=256 Identities=15% Similarity=0.148 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISI------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------ 331 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------ 331 (608)
+.++..+|.+++..|++++|+.+|++++.+ .|....++..+|.++...|++++|+..+++++++.+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 468899999999999999999999999987 44457789999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHH
Q 040048 332 HRAHHRLANLYLRLGE--------------------VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNT 391 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (608)
..++..+|.+|...|+ +++|+..+++++. +.+........
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~-~~~~~~~~~~~------------------- 182 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS-LVTALGDRAAQ------------------- 182 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH-HHHHHTCHHHH-------------------
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHhcCCHHHH-------------------
Confidence 4489999999999999 8888888887754 21111111111
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHH
Q 040048 392 LIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDA 471 (608)
Q Consensus 392 A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 471 (608)
..++..+|.++...|++++|+.++++++...+...... ....++..+|.++...|++++|
T Consensus 183 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 183 ----------------GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----AERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHcCCHHHH
Confidence 23555666666666777777666666665543321111 1256889999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHHc
Q 040048 472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN------SVLLCNRAACRSKL 545 (608)
Q Consensus 472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~ 545 (608)
+..+++++.+.+....... ....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...
T Consensus 243 ~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999987665422211 13345689999999999999999999999874422 56888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 040048 546 GQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 546 g~~~~A~~~~~~al~~~p~~ 565 (608)
|++++|+.+|++++++.+..
T Consensus 317 g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHC----
T ss_pred CChHHHHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 66
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=8.3e-19 Score=181.40 Aligned_cols=286 Identities=14% Similarity=0.017 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA---- 334 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~---- 334 (608)
.+++..+|.+++..|++++|+.++++++...|... .++..+|.++...|++++|+..+++++.+.+.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 56778889999999999999999999998877553 257788888888999999999999988876543222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC--CChHHH
Q 040048 335 --HHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA--DSAPQI 410 (608)
Q Consensus 335 --~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~ 410 (608)
+..+|.++...|++++|+..|++++. +.+.. .++ .....+
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~-~~~~~-----------------------------------~~~~~~~~~~~ 137 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQ-LINEQ-----------------------------------HLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHT-----------------------------------TCTTSTHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHh-----------------------------------ccccCcHHHHH
Confidence 56788888888888888888888765 22211 001 112345
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN--NKEV 488 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~ 488 (608)
+..+|.++...|++++|+.++++++...+...... ...++..+|.++...|++++|+.++++++.+.+. ....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 212 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-----QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 212 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-----GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence 67788888888999999988888887665432211 2678889999999999999999999999987433 2212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
+.. .....++.++...|++++|..++++++...+.. ...+..+|.++...|++++|+..+++++...+.
T Consensus 213 ~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 213 WIS-------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHH-------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 210 011134566889999999999999999887643 346788999999999999999999999887432
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 565 ------YSKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 565 ------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
...++..+|.++...|++++|...|++++.+.+
T Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 235788999999999999999999999998754
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=4.2e-20 Score=192.07 Aligned_cols=250 Identities=13% Similarity=0.047 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------H
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISI---DPN---KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------H 332 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~ 332 (608)
.++.+|..++..|++++|+.+|++++.+ .++ .+.+++.+|.+|..+|++++|+.++++++++.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 233 45789999999999999999999999999974433 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 412 (608)
.++..+|.+|..+|++++|+.+|++++. +.+........ ..++.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~ 228 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYS-MAEAEKQPQLM-----------------------------------GRTLY 228 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHcCChHHH-----------------------------------HHHHH
Confidence 5899999999999999999999999976 43332111111 23556
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
.+|.+|...|++++|+.+|++++.+.+.... ......++..+|.++...|++++|+.++++++.+.+.......
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-- 302 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNI----LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-- 302 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH--
Confidence 6677777777777777777776663111000 0013788999999999999999999999999987543221111
Q ss_pred HHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 493 RKAKGVAAARSNGNALFKQAK---FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
...+..+|.++...|+ +++|+.++++. ...+....++..+|.+|...|++++|+.+|++++++..
T Consensus 303 -----~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 303 -----LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0113478999999999 88999999887 34445567889999999999999999999999998743
No 68
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=3e-20 Score=185.81 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 040048 279 NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH------YHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 352 (608)
++++|+.+|+++ |.+|...|++++|+.+|++++++.+. ...++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477777777776 55677778888888888888776422 1456777777777777777777
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048 353 YHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLK 432 (608)
Q Consensus 353 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~ 432 (608)
.+|++++. +.+ ..|++..
T Consensus 98 ~~~~~Al~-l~~-------------------------------------------------------~~g~~~~------ 115 (292)
T 1qqe_A 98 DSLENAIQ-IFT-------------------------------------------------------HRGQFRR------ 115 (292)
T ss_dssp HHHHHHHH-HHH-------------------------------------------------------HTTCHHH------
T ss_pred HHHHHHHH-HHH-------------------------------------------------------HcCCHHH------
Confidence 77777654 111 1121111
Q ss_pred cCCCCCCcccccccCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 040048 433 NGPNFDVDETTRFFGPIGNANLLVVRAQVNLAC-GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ 511 (608)
Q Consensus 433 ~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~ 511 (608)
.+.++..+|.+|... |++++|+.+|++++++.|....... ....+..+|.++...
T Consensus 116 ------------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 116 ------------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------SNKCFIKCADLKALD 171 (292)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHT
T ss_pred ------------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHHHHh
Confidence 156777899999996 9999999999999998875432110 123456899999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--
Q 040048 512 AKFSEAAAAYGDGLGLDPYNSV-------LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA-----RLRRADCFA-- 577 (608)
Q Consensus 512 g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~-- 577 (608)
|++++|+.+|++++.+.|++.. ++.++|.++..+|++++|+.+|+++++++|++... +..++..+.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 9999999999999999887643 68899999999999999999999999999987653 445666664
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 578 KIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
..+++++|+..|++++.++|.+..++..+
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 46789999999999999999888776654
No 69
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=2.2e-19 Score=177.28 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=176.9
Q ss_pred CcchhHHHHhhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCCHHHHHH
Q 040048 248 SAEPTSLCRALSTRMDPETLKIMGNEDYK----AGNFAEALALYDAAISIDPNKASYRSNKTAALIA----LGRLLEAVF 319 (608)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 319 (608)
.++|...++....+.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.
T Consensus 22 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~ 99 (273)
T 1ouv_A 22 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQ 99 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHH
Confidence 34456677777678899999999999999 999999999999999985 78999999999999 999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048 320 ECREAIRIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395 (608)
Q Consensus 320 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 395 (608)
+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|++++. ..
T Consensus 100 ~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~-------------------------------- 144 (273)
T 1ouv_A 100 YYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN-------------------------------- 144 (273)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT--------------------------------
T ss_pred HHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC--------------------------------
Confidence 999999874 88999999999999 9999999999988764 11
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH----cCCHHHH
Q 040048 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA----CGRFEDA 471 (608)
Q Consensus 396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A 471 (608)
+..++..+|.++.. .+++++|
T Consensus 145 -------------------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 145 -------------------------------------------------------DGDGCTILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp -------------------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred -------------------------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 14556667777777 7888888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH---
Q 040048 472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--- 544 (608)
Q Consensus 472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--- 544 (608)
+.+|+++++.. +..++ ..+|.++.. .+++++|+.+|+++++..+ +.+++.+|.+|..
T Consensus 170 ~~~~~~a~~~~--~~~a~------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 170 LASYDKACDLK--DSPGC------------FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHHHHHHHHTT--CHHHH------------HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHCC--CHHHH------------HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 88888888763 33443 378888888 8888888888888888755 7788888888888
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHH
Q 040048 545 -LGQFEKAIEDCNAALNVRPGYSKA 568 (608)
Q Consensus 545 -~g~~~~A~~~~~~al~~~p~~~~a 568 (608)
.+++++|+.+|++++++.|+++..
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888887765443
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=5.6e-19 Score=175.81 Aligned_cols=236 Identities=14% Similarity=0.040 Sum_probs=204.5
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 040048 272 NEDYKAGNF-AEALALYDAAISIDPNKASYRSNKTAALIALG--RLLEAVFECREAIRIEPHYHRAHHRLANLY----LR 344 (608)
Q Consensus 272 ~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~----~~ 344 (608)
......|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++.++++++..+|++..+|+..+.++ ..
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 334455665 68999999999999999999999999999999 999999999999999999999999999988 55
Q ss_pred c---CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 345 L---GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 345 ~---g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
. +++++++..+.+++. .
T Consensus 120 l~~~~~~~~EL~~~~~~l~-~----------------------------------------------------------- 139 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLS-S----------------------------------------------------------- 139 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHH-H-----------------------------------------------------------
T ss_pred ccccCCHHHHHHHHHHHHH-h-----------------------------------------------------------
Confidence 5 455555555555544 3
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE--DALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 499 (608)
+|+ +..+|..++.++...|.++ ++++.+.++++.+|.+..+|.
T Consensus 140 ----------------~pk----------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~--------- 184 (306)
T 3dra_A 140 ----------------DPK----------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS--------- 184 (306)
T ss_dssp ----------------CTT----------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH---------
T ss_pred ----------------CCC----------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH---------
Confidence 333 2788888888888888888 999999999999999999987
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCHHHH
Q 040048 500 AARSNGNALFKQAK------FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK-AIEDCNAALNVR---PGYSKAR 569 (608)
Q Consensus 500 ~~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~ 569 (608)
.++.++...+. ++++++++.+++..+|.+..+|+.++.++...|+..+ ...++.++++++ |.++.++
T Consensus 185 ---~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 185 ---HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp ---HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred ---HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 78888888887 9999999999999999999999999999999998555 556777788776 8899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKK-EAPDDEEVDQA 605 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~ 605 (608)
..+|.+|.+.|+.++|+++|+.+.+ ++|-....|..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 9999999999999999999999997 89999888764
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=2.2e-19 Score=186.36 Aligned_cols=307 Identities=12% Similarity=-0.033 Sum_probs=229.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHH----HcCCHHHHH---------HHHHHHHhhCCC-C---
Q 040048 272 NEDYKAGNFAEALALYDAAISIDP---NKASYRSNKTAALI----ALGRLLEAV---------FECREAIRIEPH-Y--- 331 (608)
Q Consensus 272 ~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~eA~---------~~~~~al~~~p~-~--- 331 (608)
..+...+++++|..+++++...-+ .+.......+.... ..+.+..+. ..++++-..... +
T Consensus 20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 99 (378)
T 3q15_A 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL 99 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence 344789999999999998765322 23333322222221 122222222 444443221111 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC-----
Q 040048 332 -HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD----- 405 (608)
Q Consensus 332 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----- 405 (608)
...++.+|..+...|++++|+..|++++. +.+...........+..+|.++...|+++.|+..+.++++..+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 22677899999999999999999999988 54433334566788999999999999999999999999986432
Q ss_pred -ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 040048 406 -SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK---- 480 (608)
Q Consensus 406 -~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---- 480 (608)
....++..+|.++...|++++|+..|++++.+.+...... ....++..+|.+|...|++++|+.+|++++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR----FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 2356788999999999999999999999987643221111 1267899999999999999999999999999
Q ss_pred -hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCCHHHHHHHHHHHHHcCC---HHHH
Q 040048 481 -QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-----PYNSVLLCNRAACRSKLGQ---FEKA 551 (608)
Q Consensus 481 -~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A 551 (608)
.+|.... ++..+|.++...|++++|+.++++++++. +.....+..++.++...|+ +.+|
T Consensus 255 ~~~~~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~a 322 (378)
T 3q15_A 255 KVPDLLPK------------VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322 (378)
T ss_dssp HCGGGHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred hCChhHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4444333 33599999999999999999999999874 3335567788889988998 8888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
+.++++. ...|....++..+|.+|...|++++|..+|++++++.
T Consensus 323 l~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 323 LSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888872 2334456788899999999999999999999999864
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.83 E-value=8.8e-19 Score=160.85 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
....+..+|.++...|++++|+..+++++...|.+ ..++..+|.++...|++++|+..++++++..|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD----------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 35678889999999999999999999999998874 88999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
.++. .+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++...|+++
T Consensus 77 ~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 77 KVAT------------VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHH------------HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 8775 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
.++..+|.++...|++++|+.+|+++++++|++...
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999999999999999987643
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=2.4e-19 Score=175.84 Aligned_cols=212 Identities=14% Similarity=0.087 Sum_probs=142.4
Q ss_pred hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHH
Q 040048 292 SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIA 368 (608)
Q Consensus 292 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 368 (608)
..+|.++..++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.+|..+|++++|+..|++++. ..|++.
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~- 86 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDP- 86 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCT-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCc-
Confidence 3455555566666666666666666666666666665555 55666666666666666666666655554 333220
Q ss_pred HHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCC
Q 040048 369 KAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGP 448 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~ 448 (608)
.
T Consensus 87 -------------------------------------~------------------------------------------ 87 (261)
T 3qky_A 87 -------------------------------------R------------------------------------------ 87 (261)
T ss_dssp -------------------------------------T------------------------------------------
T ss_pred -------------------------------------h------------------------------------------
Confidence 0
Q ss_pred CCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-----HHHHHHHHHHHHHHHcCCHH
Q 040048 449 IGNANLLVVRAQVNLA--------CGRFEDALAAIQKAAKQDSNNKEVNMVMRKA-----KGVAAARSNGNALFKQAKFS 515 (608)
Q Consensus 449 ~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-----~~~~~~~~lg~~~~~~g~~~ 515 (608)
...+++.+|.++.. .|++++|+..|++++...|++..+......+ .....++.+|.++...|+++
T Consensus 88 --~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 88 --VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp --HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 13444455555555 8899999999999999999987665433221 11233467888888888888
Q ss_pred HHHHHHHHhhcCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc
Q 040048 516 EAAAAYGDGLGLDPY---NSVLLCNRAACRSKL----------GQFEKAIEDCNAALNVRPGYS---KARLRRADCFAKI 579 (608)
Q Consensus 516 eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~ 579 (608)
+|+..|+++++..|+ .+.+++.+|.+|..+ |++++|+..|+++++..|+++ .+...++.++..+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 888888888888887 456888888888876 888888888888888888874 5566777777777
Q ss_pred CCHHHHH
Q 040048 580 EKWEASM 586 (608)
Q Consensus 580 g~~~~A~ 586 (608)
++++++.
T Consensus 246 ~~~~~~~ 252 (261)
T 3qky_A 246 TELEGDA 252 (261)
T ss_dssp HHHHTCT
T ss_pred HHhhhhh
Confidence 7665543
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=2.8e-19 Score=184.97 Aligned_cols=304 Identities=14% Similarity=-0.029 Sum_probs=218.6
Q ss_pred CCCcchhHHHHhhhC--C-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHcC
Q 040048 246 SSSAEPTSLCRALST--R-MDP----ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA------SYRSNKTAALIALG 312 (608)
Q Consensus 246 ~~~~~a~~~~~~~~~--~-~~~----~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~la~~~~~~g 312 (608)
+..+++...++..+. + .++ .++..+|.++...|++++|+..|++++.+.|... .++..+|.++...|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 444556666655432 2 333 2678899999999999999999999999866542 34788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHH
Q 040048 313 RLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTL 392 (608)
Q Consensus 313 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A 392 (608)
++++|+..+++++.+.+.. +.. ..|.. ...+..++.++...|++++|
T Consensus 108 ~~~~A~~~~~~al~~~~~~--------------~~~-------------~~~~~------~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQ--------------HLE-------------QLPMH------EFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------------TCT-------------TSTHH------HHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------------ccc-------------cCcHH------HHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998754211 000 00111 34556678888999999999
Q ss_pred HHHHHHHHHcCCCC----hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH
Q 040048 393 IQETRAAIAGGADS----APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF 468 (608)
Q Consensus 393 ~~~~~~al~~~~~~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 468 (608)
+..+++++...+.. ....+..+|.++...|++++|...+++++.+.+....... ........++.++...|++
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD---WISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH---HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHCCCH
Confidence 99999999876542 3467888999999999999999999998765332100000 0011222455668899999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------CHHHHHHHHHHH
Q 040048 469 EDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY------NSVLLCNRAACR 542 (608)
Q Consensus 469 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~la~~~ 542 (608)
++|..++++++...+....... ..+..+|.++...|++++|+..+++++...+. ...++..+|.++
T Consensus 232 ~~A~~~~~~a~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 232 AAAANWLRHTAKPEFANNHFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcchhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 9999999999887765321110 11247899999999999999999999876432 235788899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
...|++++|...|++++.+.+. ......+...| +.....++.++...|-+.
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~-----~g~~~~~~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANR-----TGFISHFVIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH-----HCCCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHhCCHHHHHHHHHHHHHHhcc-----ccHHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence 9999999999999999987532 11112233333 567778888888888533
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.4e-19 Score=202.26 Aligned_cols=185 Identities=12% Similarity=-0.039 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAI--------SIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 332 (608)
|.++.+++..| +..|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 45666666666 67788888888888888 77888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 412 (608)
.+|+.+|.+|..+|++++|+..|+++++ ++|++
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~---------------------------------------------- 500 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLD-TFPGE---------------------------------------------- 500 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC----------------------------------------------
Confidence 8888888888888888888888888776 55544
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
..++..+|.++...|++++ +..|+++++++|++..++.
T Consensus 501 ---------------------------------------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-- 538 (681)
T 2pzi_A 501 ---------------------------------------LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-- 538 (681)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH--
T ss_pred ---------------------------------------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH--
Confidence 5666677777777777777 7788888888887777665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 547 (608)
++|.++...|++++|+..|+++++++|++..+++++|.++...++
T Consensus 539 ----------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 ----------GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777888888888888888888888888777888888877766555
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=6.4e-19 Score=172.83 Aligned_cols=215 Identities=15% Similarity=0.053 Sum_probs=173.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---ASYRSNKTAALIALGRLLEAVFECREAIRIEPHY---HR 333 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~ 333 (608)
.+.+++.++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.+|..+|++++|+..|++++++.|++ ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 56789999999999999999999999999999999999 8899999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 334 AHHRLANLYLR--------LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 334 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
+++.+|.++.. .|++++|+..|++++. ..|++...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~------------------------------------ 133 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID-RYPNHELV------------------------------------ 133 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH-HCTTCTTH------------------------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH-HCcCchhH------------------------------------
Confidence 89999999999 8888888888888776 66655210
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN 485 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 485 (608)
...+..+....+ . ....++.+|.+|...|++++|+..|+++++..|++
T Consensus 134 -----~~a~~~~~~~~~-------~--------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 134 -----DDATQKIRELRA-------K--------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp -----HHHHHHHHHHHH-------H--------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred -----HHHHHHHHHHHH-------H--------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 000000000000 0 14557789999999999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 040048 486 KEVNMVMRKAKGVAAARSNGNALFKQ----------AKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 486 ~~~~~~l~~~~~~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 552 (608)
..... ++..+|.++... |++++|+..|+++++..|+++ .+...++.++..+++++++.
T Consensus 182 ~~~~~---------a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 182 PWADD---------ALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TTHHH---------HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred chHHH---------HHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 53221 234889999877 999999999999999999984 56667788887777766543
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=5.9e-20 Score=205.31 Aligned_cols=187 Identities=15% Similarity=0.067 Sum_probs=154.2
Q ss_pred cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc
Q 040048 293 IDPNKASYRSNKTAALIALGRLLEAVFECREAI--------RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ 364 (608)
Q Consensus 293 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p 364 (608)
++|+++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.+|..+|++++|+..|+++++ .
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-- 462 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-R-- 462 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-c--
Confidence 4566666655555 55667777777777776 66666666777777777777777666666666654 2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCccccc
Q 040048 365 VDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTR 444 (608)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 444 (608)
+|++
T Consensus 463 -------------------------------------------------------------------------~p~~--- 466 (681)
T 2pzi_A 463 -------------------------------------------------------------------------VGWR--- 466 (681)
T ss_dssp -------------------------------------------------------------------------HCCC---
T ss_pred -------------------------------------------------------------------------Ccch---
Confidence 3332
Q ss_pred ccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 445 FFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524 (608)
Q Consensus 445 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 524 (608)
..+++.+|.++...|++++|+..|+++++++|++..++. .+|.++...|++++ +.+|+++
T Consensus 467 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~------------~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 467 -------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL------------ALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH------------HHHHHHHHHTCCCT-TCHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcCChHH-HHHHHHH
Confidence 788999999999999999999999999999999998886 89999999999999 9999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 525 LGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 525 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+++++|.++...++
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999988666
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.81 E-value=1e-18 Score=181.31 Aligned_cols=241 Identities=14% Similarity=0.083 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDP------NKASYRSNKTAALIALGRLLEAVFECREAIRIEPH-------YH 332 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~ 332 (608)
.++.+|..++..|++++|+.+|++++.+.+ ..+.+++.+|.+|..+|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999998743 23568999999999999999999999999987543 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048 333 RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412 (608)
Q Consensus 333 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 412 (608)
.++..+|.+|..+|++++|+..|++++. +.+........ ..++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~ 226 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALE-LAMDIQNDRFI-----------------------------------AISLL 226 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCCHHHH-----------------------------------HHHHH
Confidence 5788999999999999999999999876 32211111111 24566
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCC-----CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-
Q 040048 413 LQAEALLKLHKHQEADETLKNGPN-----FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK- 486 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~-----~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 486 (608)
.+|.+|...|++++|+.+|++++. .+|. ...++..+|.++...|++++|+.++++++.+.+...
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL----------LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 667777777777777777777766 3443 278899999999999999999999999999866522
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 487 -EVNMVMRKAKGVAAARSNGNALFKQAK---FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR 562 (608)
Q Consensus 487 -~~~~~l~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 562 (608)
.... .+..++.++...++ +.+|+.++++. ...+....++..+|.+|...|++++|+.+|++++++.
T Consensus 297 ~~~~~---------~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 297 KFYKE---------LFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp SCHHH---------HHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 2211 12477888888888 88999998873 3334456788899999999999999999999998753
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.3e-17 Score=188.95 Aligned_cols=273 Identities=13% Similarity=0.058 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..+.+|+.+|.++...|++++|+..|.++ +++..|..+|.++...|++++|+++|..+.+..++ +.+...+|.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHH
Confidence 56788888888888888888888888775 67788888888888888888888888888877644 2233358888
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|.+++++++ ++.|..... ...+...|..+...|+|++|+..|.++ ..|..++.+|.++
T Consensus 1177 YAKl~rlee-le~fI~~~n------------~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFINGPN------------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHhhcCHHH-HHHHHhCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence 888888774 444432211 234556888888888888888888885 3678888888888
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
|++++|++.++++.. ..+|...+.++...|+|..|..+... +..+|+..+
T Consensus 1235 ge~q~AIEaarKA~n---------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLe-------------- 1284 (1630)
T 1xi4_A 1235 GEYQAAVDGARKANS---------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE-------------- 1284 (1630)
T ss_pred CCHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHH--------------
Confidence 888888888888843 67888888888888888888887764 444443222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP-----GYSKARLRRAD 574 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~ 574 (608)
.++..|...|.|++|+.++++++.+++.+...+..+|.+|.+ -++..++++.|...+.+.| .....|..+..
T Consensus 1285 -eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1285 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999888888876 5678899999999988877 67889999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040048 575 CFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al 593 (608)
+|.+-|+|+.|+..+-...
T Consensus 1364 LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHhcccHHHHHHHHHhcc
Confidence 9999999999995554443
No 80
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=8.4e-18 Score=161.09 Aligned_cols=207 Identities=11% Similarity=0.057 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---SYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR---AHH 336 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---~~~ 336 (608)
.++.++.+|..++..|+|++|+..|++++...|+++ .+++.+|.+|..+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 577899999999999999999999999999988864 67899999999999999999999999999998753 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAE 416 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~ 416 (608)
.+|.++..+|.. .+
T Consensus 83 ~~g~~~~~~~~~-----~~------------------------------------------------------------- 96 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------------------------------------------------------- 96 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhhhhh-----hh-------------------------------------------------------------
Confidence 888888765531 00
Q ss_pred HHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040048 417 ALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAK 496 (608)
Q Consensus 417 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 496 (608)
..+..++..+...|++++|+..|+++++..|++..++...
T Consensus 97 ------------------------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~---- 136 (225)
T 2yhc_A 97 ------------------------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT---- 136 (225)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----
T ss_pred ------------------------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----
Confidence 0011123334445666666666666666666666554311
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS---KARLRRA 573 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la 573 (608)
..++.+... .......+|.+|...|++++|+..|+++++..|+++ .+++.+|
T Consensus 137 -----~~l~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~ 191 (225)
T 2yhc_A 137 -----KRLVFLKDR--------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLME 191 (225)
T ss_dssp -----HHHHHHHHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred -----HHHHHHHHH--------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHH
Confidence 011111110 011234567777777777777777777777777764 5677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 574 DCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
.+|.++|++++|++.|+++....|++.
T Consensus 192 ~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 192 NAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 777777777777777777777777653
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=7.1e-17 Score=183.05 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=212.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 040048 270 MGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVE 349 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 349 (608)
+|.++...|.|++|..+|+++- .....+...+...+++++|+++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 5999999999999999999972 11122334455889999999999876 56899999999999999999
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHH
Q 040048 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADE 429 (608)
Q Consensus 350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 429 (608)
+|+..|.++-. ...+...+..+.+.|+|++|++.|..+.+..++.. +...+|.+|.+++++++ ++
T Consensus 1123 EAIdsYiKAdD------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--Idt~LafaYAKl~rlee-le 1187 (1630)
T 1xi4_A 1123 EAIDSYIKADD------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAE-LE 1187 (1630)
T ss_pred HHHHHHHhcCC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc--ccHHHHHHHHhhcCHHH-HH
Confidence 99999988733 56678899999999999999999999998875532 33358999999999886 44
Q ss_pred HhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 430 TLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALF 509 (608)
Q Consensus 430 ~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~ 509 (608)
.|.. .+ +...+..+|..+...|+|++|+.+|.++ ..| ..+|.++.
T Consensus 1188 ~fI~----~~-----------n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny------------~rLA~tLv 1232 (1630)
T 1xi4_A 1188 EFIN----GP-----------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNF------------GRLASTLV 1232 (1630)
T ss_pred HHHh----CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHH------------HHHHHHHH
Confidence 4432 12 2556778999999999999999999986 133 38899999
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 589 (608)
+.|++++|+++++++ .+..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.|++|+.++
T Consensus 1233 kLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998 4568888888888888888888887774 4433 455568888888888888888888
Q ss_pred HHHHHhCCCCHHHHHHh
Q 040048 590 EILKKEAPDDEEVDQAL 606 (608)
Q Consensus 590 ~~al~l~P~~~~~~~~L 606 (608)
++++.++|.+...+..|
T Consensus 1304 E~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHhccChhHhHHHHHH
Confidence 88888888887776544
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=4e-19 Score=158.83 Aligned_cols=146 Identities=10% Similarity=-0.002 Sum_probs=93.4
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
+|.++...|++++|+..+++++...|+. +..++.+|.+|+..|++++|+..|+++++++|++..++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~--- 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR--- 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---
Confidence 4555555666666666666666665553 555666666666666666666666666666666666654
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHH
Q 040048 494 KAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED-CNAALNVRPGYSKARLRR 572 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~l 572 (608)
.+|.++...|++++|+.+|+++++++|+++.+++.+|.+|...|++++|... ++++++++|+++.++..+
T Consensus 70 ---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 70 ---------FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ---------HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 6666666666666666666666666666666666666666666666655544 366666666666666666
Q ss_pred HHHHHHcCC
Q 040048 573 ADCFAKIEK 581 (608)
Q Consensus 573 a~~~~~~g~ 581 (608)
+.++...|+
T Consensus 141 ~~ll~~~G~ 149 (150)
T 4ga2_A 141 EQLLDCEGE 149 (150)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHHhCc
Confidence 666666554
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=3.9e-18 Score=161.35 Aligned_cols=169 Identities=11% Similarity=0.036 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSN----------------KTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~eA~~~~~~al~ 326 (608)
.++.++..|..++..|++++|+.+|++++..+|+++.+++. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhc--HHHHHHHHHHHHHcCC
Q 040048 327 IEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRD--WNTLIQETRAAIAGGA 404 (608)
Q Consensus 327 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~~ 404 (608)
++|+++.+++.+|.+|...|++++|+..|++++. ++|++ ..+++.+|.++...+. ...+...+.+++. +
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~ 153 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--P 153 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC---C--C
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--C
Confidence 9999999999999999999999999999999999 99998 6788888888876654 4566777777654 3
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 440 (608)
......++.+|.++...|++++|+..|+++++++|+
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 333456788899999999999999999999999997
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=2.3e-19 Score=160.43 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=125.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCN 537 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 537 (608)
||.++...|++++|+..+++++..+|+++..+. .+|.+|+..|++++|+.+|+++++++|+++.+|+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~------------~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGF------------YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788888999999999999999998888777665 89999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHh
Q 040048 538 RAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD-YEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~-~~~al~l~P~~~~~~~~L 606 (608)
+|.+|...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|.+. ++++++++|+++.++..+
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~ 140 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK 140 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999887766 599999999999987643
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=7.7e-19 Score=172.90 Aligned_cols=234 Identities=17% Similarity=0.118 Sum_probs=175.3
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHH
Q 040048 276 KAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIE--------PHYHRAHHRLA 339 (608)
Q Consensus 276 ~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la 339 (608)
..|++++|+.+|++++++ +|..+.++..+|.++...|++++|+.+|++++.+. |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777888888887774 35567889999999999999999999999999873 55577899999
Q ss_pred HHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 040048 340 NLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALL 419 (608)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~ 419 (608)
.+|...|++++|+..|++++. +. ++.. +++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~-~~---------------------------------~~~~--~~~-------------- 122 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE-IR---------------------------------EKVL--GKF-------------- 122 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH-HH---------------------------------HHHH--CTT--------------
T ss_pred HHHHHhccHHHHHHHHHHHHH-HH---------------------------------HHHc--CCC--------------
Confidence 999999999999999998865 10 0000 000
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRK 494 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~ 494 (608)
.|. ...++..+|.++...|++++|+.+|++++.+ .++.+..
T Consensus 123 ------------------~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------ 168 (283)
T 3edt_B 123 ------------------HPD----------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV------ 168 (283)
T ss_dssp ------------------CHH----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH------
T ss_pred ------------------ChH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH------
Confidence 011 2678888999999999999999999999987 1222222
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHH
Q 040048 495 AKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL---------DPYNSVLLCNRAACRSKLGQ------FEKAIEDCNAAL 559 (608)
Q Consensus 495 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al 559 (608)
...+..+|.++...|++++|+.+|++++.. .+.....+..++..+...+. +.++...++...
T Consensus 169 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 169 ---AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 123358999999999999999999999976 45556677777777766554 344444444444
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 560 NVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 560 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
...|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4456667899999999999999999999999999764
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=2e-18 Score=163.27 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=133.8
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVV----------------RAQVNLACGRFEDALAA 474 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 474 (608)
+...|..+...|++++|+..|++++..+|++ +.+++. +|.++...|++++|+..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555555555555555555543 444444 99999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 040048 475 IQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ--FEKAI 552 (608)
Q Consensus 475 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~ 552 (608)
|+++++++|++..++. .+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ ...+.
T Consensus 77 ~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 77 YKELLQKAPNNVDCLE------------ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999998876 899999999999999999999999999999999999999987764 45678
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
..|++++...|. ..+++.+|.++..+|++++|+.+|+++++++|++.
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 888887654332 34788999999999999999999999999999754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=2.5e-18 Score=171.82 Aligned_cols=219 Identities=13% Similarity=0.023 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPN------KASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HR 333 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 333 (608)
.+...|.++...|+|++|+.+|++++.+.+. .+.++.++|.+|..+|++++|+.+|++++++.+.. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666688999999999999999999998532 25689999999999999999999999999987654 56
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH----
Q 040048 334 AHHRLANLYLRL-GEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP---- 408 (608)
Q Consensus 334 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 408 (608)
++..+|.+|... |++++|+.+|++++. +.|...........+..++.++...|++++|+..|++++...|+...
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 899999999996 999999999999998 76654333344677889999999999999999999999999876532
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCC
Q 040048 409 --QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNL--ACGRFEDALAAIQKAAKQDSN 484 (608)
Q Consensus 409 --~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 484 (608)
..+..+|.++..+|++++|+..|++++.++|+..... ....+..++..+. ..+++++|+..|++++.++|.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-----ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-----HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 3678899999999999999999999999999753321 1345555666664 567899999999999888887
Q ss_pred ChHHHH
Q 040048 485 NKEVNM 490 (608)
Q Consensus 485 ~~~~~~ 490 (608)
...++.
T Consensus 273 ~~~~~~ 278 (292)
T 1qqe_A 273 KITILN 278 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 88
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=1e-16 Score=160.29 Aligned_cols=235 Identities=14% Similarity=0.094 Sum_probs=195.6
Q ss_pred HHHcCCHH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 274 DYKAGNFA-EALALYDAAISIDPNKASYRSNKTAALIALGR----------LLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 274 ~~~~g~~~-~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
....|++. +|+.++.++|.++|++..+|+.++.++..++. +++++.+++.++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34667776 79999999999999999999999999988776 68999999999999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 343 LRLGE--VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 343 ~~~g~--~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
..+|. +++++.++.+++. .+|.+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~-~dprN------------------------------------------------------ 143 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLE-ADERN------------------------------------------------------ 143 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHH-HCTTC------------------------------------------------------
T ss_pred hccCcccHHHHHHHHHHHHH-hCCCC------------------------------------------------------
Confidence 98884 7777777777665 44443
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVA 499 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 499 (608)
..+|...+.+....|. ++++++++.+++..+|.+..+|.
T Consensus 144 -------------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~--------- 183 (331)
T 3dss_A 144 -------------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH--------- 183 (331)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH---------
T ss_pred -------------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH---------
Confidence 6777778888888887 68999999999999999999887
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHH
Q 040048 500 AARSNGNALFKQ--------------AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKL-----------GQFEKAIED 554 (608)
Q Consensus 500 ~~~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~ 554 (608)
.++.++... +.++++++++.+++..+|++..+|+.+..++... +.+++++++
T Consensus 184 ---~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 184 ---YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp ---HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 666666665 5689999999999999999999998776666555 468999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 555 CNAALNVRPGYSKARLRRADCFA---KIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 555 ~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
+++++++.|++...+..++.+.. ..|..++...++.+++++||-...-+.-|
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 99999999999666655554433 35788999999999999999888776654
No 89
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=3.5e-18 Score=147.75 Aligned_cols=108 Identities=29% Similarity=0.659 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
.+..+|..+++.|+|++|+.+|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 580 EKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|++++|+++|+++++++|++.+++..|.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 9999999999999999999999998875
No 90
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-19 Score=185.73 Aligned_cols=273 Identities=12% Similarity=0.034 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.++++|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44679999999999999999999999774 46678999999999999999999999999885444 7788899999
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|.++|+++++.+.++. |+ ...+...|..+...|.|++|...|.++ ..|..+|.++..+
T Consensus 104 Y~Klg~l~e~e~f~~~------pn-------~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 104 LAKTNRLAELEEFING------PN-------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp -----CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHcC------Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 9999999998866632 32 238899999999999999999999976 3688999999999
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
|++++|++.++++. ++.+|.....++...|+++.|..+... +...|++ ..
T Consensus 162 g~yq~AVea~~KA~---------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~----------- 211 (449)
T 1b89_A 162 GEYQAAVDGARKAN---------------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LE----------- 211 (449)
T ss_dssp TCHHHHHHHHHHHT---------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HH-----------
T ss_pred ccHHHHHHHHHHcC---------------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HH-----------
Confidence 99999999999993 288999999999999999999777765 2244433 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK--LGQFEKAIEDCNAALNVRP-----GYSKARLRRAD 574 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~ 574 (608)
.+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..++++.|...+.+.| .....|..+..
T Consensus 212 -~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 212 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999876 5678888888888888877 77889999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040048 575 CFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al 593 (608)
+|...++|+.|+..+-...
T Consensus 291 ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHTTCHHHHHHHHHHST
T ss_pred HHHhhchHHHHHHHHHhCC
Confidence 9999999999998665543
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=1.7e-17 Score=152.18 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..++..+|.++...|++++|+..+++++...|.+..++. .+|.++...|++++|+.+|++++...|.+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF------------RLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHH------------HHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 444555566666666666666666666666666555543 56666666677777777777776666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
+.++..+|.++...|++++|+.+|++++++.|++
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 6677777777777777777777777776666554
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=1.6e-16 Score=158.10 Aligned_cols=228 Identities=7% Similarity=-0.093 Sum_probs=195.1
Q ss_pred chhHHHHhh--hCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHH----HHc---CCHHHHH
Q 040048 250 EPTSLCRAL--STRMDPETLKIMGNEDYKAG--NFAEALALYDAAISIDPNKASYRSNKTAAL----IAL---GRLLEAV 318 (608)
Q Consensus 250 ~a~~~~~~~--~~~~~~~~~~~lg~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~eA~ 318 (608)
++..+...+ .+|.+..+|+..|.++...| ++++++.+++.++..+|++..+|+.++.++ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 344444444 45889999999999999999 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHH
Q 040048 319 FECREAIRIEPHYHRAHHRLANLYLRLGEVE--KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQET 396 (608)
Q Consensus 319 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 396 (608)
.++.++++.+|.+..+|...+.++..+|.++ ++++.+.+++. .+|.+
T Consensus 131 ~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d~~N------------------------------ 179 (306)
T 3dra_A 131 DILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-TDLKN------------------------------ 179 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HCTTC------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-hCCCC------------------------------
Confidence 9999999999999999999999999999887 88888877766 55544
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC------HHH
Q 040048 397 RAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR------FED 470 (608)
Q Consensus 397 ~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~ 470 (608)
..+|..++.++...++ +++
T Consensus 180 -------------------------------------------------------~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 180 -------------------------------------------------------NSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHhccccchhhhHHH
Confidence 4555555666555555 899
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHhhcCC---CCCHHHHHHHHHHHHHcC
Q 040048 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE-AAAAYGDGLGLD---PYNSVLLCNRAACRSKLG 546 (608)
Q Consensus 471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g 546 (608)
+++++.+++..+|.+..+|. .++.++...|+..+ ...++.+++.++ +.++.++..+|.++.+.|
T Consensus 205 El~~~~~aI~~~p~n~SaW~------------y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWN------------YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHH------------HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCccHHH------------HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 99999999999999999997 77888888888555 556888888776 888999999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 040048 547 QFEKAIEDCNAALN-VRPGYSKARLRRADC 575 (608)
Q Consensus 547 ~~~~A~~~~~~al~-~~p~~~~a~~~la~~ 575 (608)
+.++|+++|+.+.+ .+|-....|..++..
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999999997 799999888877654
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=3.3e-17 Score=161.12 Aligned_cols=211 Identities=22% Similarity=0.215 Sum_probs=159.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRI------ 327 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------ 327 (608)
..+.++..+|.+++..|++++|+.+|++++.+ +|....++..+|.++...|++++|+.+|++++.+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 45778999999999999999999999999987 3556778999999999999999999999999988
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 328 --EPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 328 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
+|....++..+|.+|...|++++|+.+|++++. + +... ..++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~---------------------------------~~~~--~~~~ 164 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE-I---------------------------------YATR--LGPD 164 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-H---------------------------------HHHH--SCTT
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H---------------------------------HHHh--cCCC
Confidence 466678999999999999999999999998865 1 0000 0000
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQ---- 481 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 481 (608)
.|. ...++..+|.++...|++++|+.+|++++.+
T Consensus 165 --------------------------------~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 165 --------------------------------DPN----------VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp --------------------------------CHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 111 2667788888889999999999999988876
Q ss_pred -----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 482 -----DSNNKEVNMVMRKAKGVAAARSNGNALFKQA------KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 482 -----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g------~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
.+.....+. .++..+...+ .+.++...++......|....++..+|.+|..+|++++
T Consensus 203 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 203 EFGSVNGDNKPIWM------------HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HSSSCCSSCCCHHH------------HHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCcchhHHHHHH------------HHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 333333433 4444444433 35566666666666667778899999999999999999
Q ss_pred HHHHHHHHHhcC
Q 040048 551 AIEDCNAALNVR 562 (608)
Q Consensus 551 A~~~~~~al~~~ 562 (608)
|+.+|++++++.
T Consensus 271 A~~~~~~al~~~ 282 (283)
T 3edt_B 271 AHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999999763
No 94
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=7e-17 Score=139.49 Aligned_cols=113 Identities=22% Similarity=0.272 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..+..+|..++..|+|++|+..|+++++++|.+..++. .+|.++..+|++++|+..|+++++++|++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYS------------NRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 889999999999999999999999999999999998886 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.++
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998874
No 95
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=8.3e-16 Score=154.34 Aligned_cols=242 Identities=11% Similarity=-0.013 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG-RLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
+++..+..+....+..++|+.++.++|.++|++..+|..++.++..+| .+++++.++++++..+|++..+|...+.++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445555555556666789999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred Hc-C-CHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 344 RL-G-EVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 344 ~~-g-~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
.+ + ++++++.++.+++. .+|.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~-~dpkN------------------------------------------------------- 158 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLL-PDPKN------------------------------------------------------- 158 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTS-SCTTC-------------------------------------------------------
T ss_pred HhcCCChHHHHHHHHHHHH-hCCCC-------------------------------------------------------
Confidence 98 7 88899999998888 77766
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhCCCChHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRF--------EDALAAIQKAAKQDSNNKEVNMVMR 493 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~p~~~~~~~~l~ 493 (608)
..+|..++.++...|.+ .++++.+.++++.+|.+..+|.
T Consensus 159 ------------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~--- 205 (349)
T 3q7a_A 159 ------------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG--- 205 (349)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred ------------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH---
Confidence 33333333333333333 4999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH------------------
Q 040048 494 KAKGVAAARSNGNALFKQAK-------FSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF------------------ 548 (608)
Q Consensus 494 ~~~~~~~~~~lg~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------------ 548 (608)
.++.++...++ ++++++++.+++..+|.+..+|+.+..++...|+-
T Consensus 206 ---------~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 206 ---------WRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp ---------HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred ---------HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 88889888887 79999999999999999999999999999888764
Q ss_pred --HHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHH
Q 040048 549 --EKAIEDCNAALNVR------PGYSKARLRRADCFAKIEKWEASMQDYEILK-KEAPDDEEVDQ 604 (608)
Q Consensus 549 --~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~ 604 (608)
.+-...+...+... +..+.++..++.+|...|+.++|.++|+.+. +.||-....|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 22333333333222 4678899999999999999999999999987 67887776664
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=169.71 Aligned_cols=219 Identities=21% Similarity=0.189 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISI--------DPNKASYRSNKTAALIALGRLLEAVFECREAIRIE---- 328 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---- 328 (608)
+..+.++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++++.
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999999987 35567789999999999999999999999999874
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048 329 ----PHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA 404 (608)
Q Consensus 329 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 404 (608)
|....++..+|.++...|++++|+.+|++++. +.
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~----------------------------------------- 183 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE-IY----------------------------------------- 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HH-----------------------------------------
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HH-----------------------------------------
Confidence 45567899999999999999999999998765 10
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhhcCCC-CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLKNGPN-FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
.+... ..|. ...++..+|.++...|++++|+.+|++++...+
T Consensus 184 ---------------------------~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 184 ---------------------------QTKLGPDDPN----------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp ---------------------------HHTSCTTCHH----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHhCCCCHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 00000 0011 156677778888888888888888888776532
Q ss_pred C---------ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 484 N---------NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIED 554 (608)
Q Consensus 484 ~---------~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 554 (608)
. ....+. ....+...+..+...+.+.+|+..+.+++...|..+.++..+|.+|...|++++|+.+
T Consensus 227 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 227 EREFGSVDDENKPIWM------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp HHHHC------CCHHH------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCCCCcchHHHHH------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 222221 1223345667777788888899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 040048 555 CNAALNVRPG 564 (608)
Q Consensus 555 ~~~al~~~p~ 564 (608)
|++++++.|+
T Consensus 301 ~~~al~l~~~ 310 (311)
T 3nf1_A 301 EEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=9.2e-18 Score=149.65 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 471 ALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK 550 (608)
Q Consensus 471 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 550 (608)
+-..+++++.++|++...+. .+|.++...|++++|+.+|++++.++|.++.+|+++|.++..+|++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~------------~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIY------------SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHhCCCHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHH
Confidence 44556677888888888775 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 040048 551 AIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 551 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 600 (608)
|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999876
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=6.8e-17 Score=162.57 Aligned_cols=256 Identities=16% Similarity=0.083 Sum_probs=184.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 276 KAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHF 355 (608)
Q Consensus 276 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 355 (608)
..|++++|..+++++.+..+... +...+++++|+.+|.++ |.+|...|++++|+..|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 35788899999999988766421 11158899999888876 56788899999999999
Q ss_pred HHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCC
Q 040048 356 KHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGP 435 (608)
Q Consensus 356 ~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al 435 (608)
.+++. +.+.. ++...+ ..++..+|.+|...|++++|+.+|++++
T Consensus 60 ~~al~-~~~~~--------------------~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 60 LQEAE-AHANN--------------------RSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHH-HHHHT--------------------TCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHH-HHHHc--------------------CCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 98866 32221 222222 2455666777777777777777777776
Q ss_pred CCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 040048 436 NFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFS 515 (608)
Q Consensus 436 ~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~ 515 (608)
.+.+...... ....++..+|.+|.. |++++|+.+|++++.+.+...... .....+..+|.++...|+++
T Consensus 104 ~l~~~~g~~~----~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 104 VMYVENGTPD----TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHHTTTCHH----HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHH----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCCHH
Confidence 6533211100 127889999999999 999999999999999877654432 24677889999999999999
Q ss_pred HHHHHHHHhhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHH
Q 040048 516 EAAAAYGDGLGLDPYN------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSK-----ARLRRADCFAKIEKWEA 584 (608)
Q Consensus 516 eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~~~g~~~~ 584 (608)
+|+.+|++++.+.+.+ ..++..+|.++..+|++++|+.+|++++ ++|+... .+..++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 9999999999975533 3478889999999999999999999999 9999853 344555555 5677655
Q ss_pred HHHH--HHHHHHhCCCCHHHH
Q 040048 585 SMQD--YEILKKEAPDDEEVD 603 (608)
Q Consensus 585 A~~~--~~~al~l~P~~~~~~ 603 (608)
+... |..+..++|....+.
T Consensus 251 ~~~~~~~~~~~~ld~~~~~~~ 271 (307)
T 2ifu_A 251 LLRVCRSPLVTYMDNDYAKLA 271 (307)
T ss_dssp HHHHTTSHHHHTSCHHHHHHH
T ss_pred HHHHHhCchhhhhhHHHHHHH
Confidence 5442 344555555444433
No 99
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.4e-17 Score=170.95 Aligned_cols=277 Identities=12% Similarity=0.072 Sum_probs=172.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
..|+..+..++..+...|+|++|+.+++.+++..++ +.+...++.+|.++|++.++.++++ .|+ ..+|..+|.
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd 130 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGD 130 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-----CC-----------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHH
Confidence 357779999999999999999999999999986444 7788899999999999999988885 244 459999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
.+...|+|++|..+|.++ ..+..++.++.++|++++|++.+.++. .+..|...+.++..
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 189 (449)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHH
Confidence 999999999999999986 247889999999999999999999992 36889999999999
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.|+++.|..+..... ..|+ -...+..+|...|++++|+.+++.++.+++.+...+.
T Consensus 190 ~~ef~lA~~~~l~L~-~~ad-------------~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft---------- 245 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-VHAD-------------ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT---------- 245 (449)
T ss_dssp TTCHHHHHHTTTTTT-TCHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH----------
T ss_pred cCcHHHHHHHHHHHH-hCHh-------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH----------
Confidence 999999988887643 5443 3446888999999999999999999999999988887
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------
Q 040048 501 ARSNGNAL--FKQAKFSEAAAAYGDGLGLDP-----YNSVLLCNRAACRSKLGQFEKAIEDCNAALNV------------ 561 (608)
Q Consensus 501 ~~~lg~~~--~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------ 561 (608)
.+|.+| ++.++..+.++.|...+.+.| .++..|..+..+|...++|+.|+...-.....
T Consensus 246 --el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~ 323 (449)
T 1b89_A 246 --ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 323 (449)
T ss_dssp --HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred --HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHh
Confidence 455554 566888999999999988888 78889999999999999999998766554332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 562 RPGYSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 562 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
.+.+.+.++.....|. +....++..+..++
T Consensus 324 kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 324 KVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 4667788888777777 44455566666666
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=7.7e-17 Score=147.94 Aligned_cols=163 Identities=18% Similarity=0.141 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
..+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++...| ++..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR----------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence 346778999999999999999999999999985 89999999999999999999999999999999 7655
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 040048 489 NMVMRKAKGVAAARSNGNAL-FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-- 565 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 565 (608)
.. .++.+. ...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.
T Consensus 76 ~~------------~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 76 KS------------LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HH------------HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HH------------HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 43 223222 233344568999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 566 SKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
..++..+|.++..+|+.++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 66999999999999999999999999875
No 101
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=4.7e-16 Score=151.23 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=188.3
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH-------HHHHHHcCChHHHHHHhhcCCCCCCcccccc
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ-------AEALLKLHKHQEADETLKNGPNFDVDETTRF 445 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l-------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 445 (608)
+..++..+..+ ..+++..|...|.+++..+|+. .+.|..+ +.++..++++.+++..+.+.+.+.|......
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 44455555555 5799999999999999999998 5777777 8999999999999999999999999876665
Q ss_pred cCCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 040048 446 FGPI-----------GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF 514 (608)
Q Consensus 446 ~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~ 514 (608)
+... .-..+...++.++...|+|++|.+.|..++...|++. ... .+|.++++.++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~------------~~a~l~~~~~r~ 151 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAW------------MKAVVYGAAERW 151 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHH------------HHHHHHHHTTCH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHH------------HHHHHHHHcCCH
Confidence 5411 2267888899999999999999999999988888766 443 889999999999
Q ss_pred HHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 515 SEAAAAYGDGLGLDPYN--SVLLCNRAACRSKLGQFEKAIEDCNAALNVR--PG-YSKARLRRADCFAKIEKWEASMQDY 589 (608)
Q Consensus 515 ~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~~g~~~~A~~~~ 589 (608)
++|+.+|++++...+.. ..+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++|...|
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888764221 4589999999999999999999999999654 55 6789999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHhh
Q 040048 590 EILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 590 ~~al~l~P~~~~~~~~L~ 607 (608)
++++..+|+ ..++..|.
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999999999 99988875
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=2.5e-16 Score=172.55 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=137.5
Q ss_pred cCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 040048 421 LHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAA 500 (608)
Q Consensus 421 ~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 500 (608)
.|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..|+++++++|++..++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------- 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA---------- 61 (568)
T ss_dssp -------------------CC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH----------
T ss_pred CccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------
Confidence 478899999999999999875 899999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI- 579 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~- 579 (608)
.+|.++...|++++|+.+|+++++.+|++..+++++|.++..+|++++|+++|+++++++|++..++..+|.++..+
T Consensus 62 --~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 --RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 580 --EKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 580 --g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
|++++|++.|+++++.+|++...+..
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred ccccHHHHHHHHHHHHhcCCcccChHHH
Confidence 99999999999999999987655443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=2.2e-16 Score=144.95 Aligned_cols=167 Identities=13% Similarity=-0.010 Sum_probs=122.6
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 040048 295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ 374 (608)
Q Consensus 295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 374 (608)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. ..| +.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~~------- 73 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-DN------- 73 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-CH-------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-Ch-------
Confidence 344456777788888888888888888888888888888888888888888888888888877776 554 31
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL 454 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~ 454 (608)
..
T Consensus 74 ------------------------------------------------------------------------------~~ 75 (176)
T 2r5s_A 74 ------------------------------------------------------------------------------SY 75 (176)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--
Q 040048 455 LVVRAQVN-LACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN-- 531 (608)
Q Consensus 455 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-- 531 (608)
+..++.+. ...++..+|+..|+++++.+|++..++. .+|.++...|++++|+..|+++++.+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC------------ELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 11111111 1111223478888888889998888776 88899999999999999999999988865
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
..++..+|.++..+|++++|+..|++++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 56888899999999999999999988875
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=2.8e-16 Score=156.39 Aligned_cols=166 Identities=18% Similarity=0.150 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 407 APQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 407 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
....+..+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 45778899999999999999999999999999985 89999999999999999999999999999999654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 040048 487 EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY- 565 (608)
Q Consensus 487 ~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 565 (608)
.... ..+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 186 ~~~~------------~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 186 YQGL------------VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp HHHH------------HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred HHHH------------HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 3332 667778888999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 566 -SKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 566 -~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
..++..++.++..+|+.++|...|++++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 89999999999999999999999999886
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.1e-15 Score=152.08 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=113.6
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 040048 295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ 374 (608)
Q Consensus 295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 374 (608)
|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++. .+|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~-------- 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDT-------- 184 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSH--------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcch--------
Confidence 666777777777777778888888888888878887777777788887777877777777777766 44432
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHH
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANL 454 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~ 454 (608)
...
T Consensus 185 -----------------------------------------------------------------------------~~~ 187 (287)
T 3qou_A 185 -----------------------------------------------------------------------------RYQ 187 (287)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC--H
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN--S 532 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~ 532 (608)
....+..+...++.++|+..|++++..+|++..++. .+|.++...|++++|+..|++++..+|++ .
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~------------~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT------------QLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH------------HHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 222333444555556666666666666666666654 66666666666666666666666666665 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
.++..++.++..+|+.++|+..|++++.
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 6666666666666666666666666654
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=2.6e-16 Score=140.22 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=112.6
Q ss_pred HHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 040048 426 EADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNG 505 (608)
Q Consensus 426 eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg 505 (608)
.+-..+++++.++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|. .+|
T Consensus 20 ~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~------------~lg 77 (151)
T 3gyz_A 20 NSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM------------GLA 77 (151)
T ss_dssp HTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHH
T ss_pred HCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHH
Confidence 3445688899999985 899999999999999999999999999999999999987 899
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS 566 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 566 (608)
.++...|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999865
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.66 E-value=4.4e-15 Score=149.24 Aligned_cols=214 Identities=12% Similarity=0.050 Sum_probs=159.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 040048 277 AGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HRAHHRLANLYLRLGEVEK 350 (608)
Q Consensus 277 ~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 350 (608)
.+++++|+.+|.++ |.+|...|++++|+.+|.+++++.+.. ..++..+|.+|..+|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 58899999998876 668889999999999999999876432 4588899999999999999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
|+.+|++++. +.+. .++...+ ..++..+|.+|.. |++++|+.+
T Consensus 95 A~~~~~~Al~-l~~~--------------------~g~~~~~---------------a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 95 AVQYIEKASV-MYVE--------------------NGTPDTA---------------AMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp GHHHHHHHHH-HHHT--------------------TTCHHHH---------------HHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHH-HHHH--------------------cCCHHHH---------------HHHHHHHHHHHHc-CCHHHHHHH
Confidence 9999999876 3211 1222111 2455566777766 777777777
Q ss_pred hhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040048 431 LKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK 510 (608)
Q Consensus 431 l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~ 510 (608)
|++++.+.+...... ....++..+|.++..+|++++|+.+|++++.+.+.....+. ....+..+|.++..
T Consensus 138 ~~~Al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 138 YQQAAAVFENEERLR----QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT------CYKKCIAQVLVQLH 207 (307)
T ss_dssp HHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH------HHHHHHHHHHHHHH
Confidence 777766554321111 12688999999999999999999999999999888776432 34567889999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLDPYNS-----VLLCNRAACRSKLGQFEKAIE 553 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 553 (608)
.|++++|+.+|++++ ++|... ..+..++..+ ..|+.+.+..
T Consensus 208 ~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999999999 988653 2344555555 5677655444
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=4.9e-15 Score=144.05 Aligned_cols=230 Identities=15% Similarity=0.034 Sum_probs=179.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH
Q 040048 301 RSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRL-------ANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL 373 (608)
Q Consensus 301 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 373 (608)
++..|.-+ .-+++.+|+..|.+++.++|+..++|..+ +.++..+++..+++..+.+.+. +.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l------ 81 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTL------ 81 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGG------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhh------
Confidence 34444444 47889999999999999999999999998 7889888889999999999988 888762
Q ss_pred HHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHH
Q 040048 374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNAN 453 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~ 453 (608)
..++.+.-.| |+ +.........+...++.++...|++++|.+.|...+...|++ .
T Consensus 82 ~a~~~~~g~y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~----------~- 136 (282)
T 4f3v_A 82 NARIAIGGLY---GD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH----------L- 136 (282)
T ss_dssp CCEEECCTTT---CC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH----------H-
T ss_pred hhhhccCCcc---cc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch----------H-
Confidence 1111100000 00 000012235677888999999999999999999999988874 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--CC-
Q 040048 454 LLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD--PY- 530 (608)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~- 530 (608)
+.+.+|.+++..+++++|+..|+++.... +... ...+++.+|.++..+|++++|+.+|++++... |.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~---------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~ 206 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL---------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC 206 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc
Confidence 88999999999999999999999776543 1110 01233589999999999999999999998654 55
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
...+++.+|.++.++|+.++|...|++++..+|+ ..++..|..
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 5679999999999999999999999999999999 887766643
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.66 E-value=2.5e-17 Score=167.88 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=156.8
Q ss_pred hcHHHHHHHHHH----HHHcCCCChHHHHHHHHHHHH------------HcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048 387 RDWNTLIQETRA----AIAGGADSAPQIYALQAEALL------------KLHKHQEADETLKNGPNFDVDETTRFFGPIG 450 (608)
Q Consensus 387 ~~~~~A~~~~~~----al~~~~~~~~~~~~~la~~~~------------~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~ 450 (608)
+.|+.|+..+.. ++.+.|.. .|..+|.... .++++++|+..+++++...|+.
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~--------- 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ--------- 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---------
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---------
Confidence 466777777666 66666654 3333333322 4566677777777777666653
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE---VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
+.++..+|.+++..|++++|+..|++++.+.|.+.. ..........+..+.++|.++...|++++|+.+|++++++
T Consensus 147 -a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 -STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999831 0000000111344569999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 040048 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEAS-MQDYEILKKE 595 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l 595 (608)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 5677877754
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=6.7e-15 Score=126.87 Aligned_cols=135 Identities=24% Similarity=0.351 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 532 (608)
.++..+|.++...|++++|+..+++++...|.+...+. .+|.++...|++++|+.+|++++...|.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHH------------HHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 46788999999999999999999999999999877765 889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++++|++
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=1.6e-15 Score=166.16 Aligned_cols=164 Identities=13% Similarity=0.043 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 278 GNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKH 357 (608)
Q Consensus 278 g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 357 (608)
|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred hCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCC
Q 040048 358 AGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNF 437 (608)
Q Consensus 358 al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 437 (608)
++. ++|++
T Consensus 83 al~-~~p~~----------------------------------------------------------------------- 90 (568)
T 2vsy_A 83 ASD-AAPEH----------------------------------------------------------------------- 90 (568)
T ss_dssp HHH-HCTTC-----------------------------------------------------------------------
T ss_pred HHh-cCCCC-----------------------------------------------------------------------
Confidence 544 22221
Q ss_pred CCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc---CCH
Q 040048 438 DVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ---AKF 514 (608)
Q Consensus 438 ~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~---g~~ 514 (608)
..++..+|.++...|++++|+..|+++++++|++..++. .+|.++... |++
T Consensus 91 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 91 --------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA------------QLLNWRRRLCDWRAL 144 (568)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCCTTH
T ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhhccccH
Confidence 455566666666666666666666666666666655544 566666666 666
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHH
Q 040048 515 SEAAAAYGDGLGLDPYNSVLLCNRA 539 (608)
Q Consensus 515 ~eA~~~~~~al~~~p~~~~~~~~la 539 (608)
++|+..|+++++.+|.....+..++
T Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 145 DVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcccChHHHhC
Confidence 6666666666666666555555444
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.65 E-value=2.6e-16 Score=140.10 Aligned_cols=119 Identities=16% Similarity=0.223 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040048 472 LAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKA 551 (608)
Q Consensus 472 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 551 (608)
-..|++++.++|++...+. .+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~------------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLY------------SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHcCCHhhHHHHH------------HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence 3467788888888777765 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 552 IEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 552 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
+.+|++++.++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++.
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999999999999999999999999999987654
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=6.3e-16 Score=153.38 Aligned_cols=105 Identities=24% Similarity=0.366 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
|.++..++.+|..++..|+|++|+.+|++++..+|+++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+|..+|++++|+..|++++. ++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~-l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS-LAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCccc
Confidence 99999999999999999887 55543
No 114
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.65 E-value=4.2e-14 Score=141.44 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=185.8
Q ss_pred hhHHHHhh--hCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC--HHH
Q 040048 251 PTSLCRAL--STRMDPETLKIMGNEDYKAGN----------FAEALALYDAAISIDPNKASYRSNKTAALIALGR--LLE 316 (608)
Q Consensus 251 a~~~~~~~--~~~~~~~~~~~lg~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~e 316 (608)
+..+...+ .+|.+..+|+..+.++...+. +++++.+++.++..+|.+..+|..++.++...|+ +++
T Consensus 49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~ 128 (331)
T 3dss_A 49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 128 (331)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHH
Confidence 44444444 347889999999999988776 7899999999999999999999999999999994 899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHH
Q 040048 317 AVFECREAIRIEPHYHRAHHRLANLYLRLGE-VEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQE 395 (608)
Q Consensus 317 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 395 (608)
++.++.++++++|.+..+|...+.++...|. ++++++++.+++. .+|.+
T Consensus 129 EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-~~p~N----------------------------- 178 (331)
T 3dss_A 129 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSN----------------------------- 178 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCSCC-----------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HCCCC-----------------------------
Confidence 9999999999999999999999999999998 5888888888877 66666
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 396 TRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAI 475 (608)
Q Consensus 396 ~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (608)
..+|..++.++........+ .+. + -...+.++++++++
T Consensus 179 ------------~SAW~~R~~ll~~l~~~~~~----------~~~------------------~--~~~~~~~~eEle~~ 216 (331)
T 3dss_A 179 ------------YSSWHYRSCLLPQLHPQPDS----------GPQ------------------G--RLPENVLLKELELV 216 (331)
T ss_dssp ------------HHHHHHHHHHHHHHSCCC------------------------------------CCCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhhhcccc----------ccc------------------c--ccchHHHHHHHHHH
Confidence 23444444444433221000 000 0 00013578999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-
Q 040048 476 QKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQ----------AKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK- 544 (608)
Q Consensus 476 ~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~- 544 (608)
.+++..+|++..+|..+ .|.+.... +.++++++++.+++++.|++.+.+..++.+...
T Consensus 217 ~~ai~~~P~d~SaW~Y~-----------r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~ 285 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYH-----------RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 285 (331)
T ss_dssp HHHHHHSTTCHHHHHHH-----------HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHH-----------HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence 99999999999999622 22222222 468999999999999999997766666554333
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 545 --LGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 545 --~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.|..++...++.+.++++|....-|..++.-+
T Consensus 286 ~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 286 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 57889999999999999999877776665443
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=2.1e-15 Score=149.51 Aligned_cols=71 Identities=20% Similarity=0.104 Sum_probs=64.2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 295 PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 295 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
|.++..++.+|.++...|++++|+..|++++.++|++..++..+|.+|..+|++++|+..|++++. ++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~ 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQS 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTC
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCC
Confidence 567788999999999999999999999999999999999999999999999999999999999988 66665
No 116
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=3.8e-15 Score=128.68 Aligned_cols=110 Identities=26% Similarity=0.368 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKAR 569 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 569 (608)
.+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|++ ..++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 355677999999999999999999999999999999999999999999999999999999999998765 4688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
.++|.++..+|++++|+++|++++++.|+ +++...|.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 99999999999999999999999999985 56655543
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.8e-15 Score=126.21 Aligned_cols=110 Identities=25% Similarity=0.462 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
+..+..+|..++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHhh
Q 040048 578 KIEKWEASMQDYEILKKEA------PDDEEVDQALQ 607 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~------P~~~~~~~~L~ 607 (608)
.+|++++|+.+|+++++++ |++..++..|.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~ 119 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHH
Confidence 9999999999999999999 99999887764
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=1.5e-14 Score=136.92 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC----
Q 040048 391 TLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG---- 466 (608)
Q Consensus 391 ~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g---- 466 (608)
+|+..|+++.+.+ .+..++.+|.+|...+++++|+.+|+++.+.. ++.+++.+|.+|.. +
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------CHHHHHHHHHHTTS-STTSC
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHc-CCCCC
Confidence 4667788887763 36789999999999999999999999997642 48999999999998 7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCC--CCHHHHHHHHH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK----QAKFSEAAAAYGDGLGLDP--YNSVLLCNRAA 540 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~la~ 540 (608)
++++|+.+|+++.+ +.++.+.. .+|.+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 68 ~~~~A~~~~~~A~~--~g~~~a~~------------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--AGSKSGEI------------VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHH------------HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHH------------HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 99999999999965 45666654 89999988 8999999999999999987 35899999999
Q ss_pred HHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 040048 541 CRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI-E-----KWEASMQDYEILKKEAP 597 (608)
Q Consensus 541 ~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-----~~~~A~~~~~~al~l~P 597 (608)
+|.. .+++++|+.+|++++++ +.++.+++.||.+|... | ++++|+.+|+++.+...
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999 89999999999999998 77788999999999875 3 89999999999999854
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=1.2e-15 Score=134.56 Aligned_cols=120 Identities=14% Similarity=0.245 Sum_probs=108.1
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 473 AAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 473 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 552 (608)
..|++++.++|++...+. .+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~------------~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLY------------ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHH------------HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 456667777777766654 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 553 EDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 553 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
.+|++++.++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++...
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999999999999999998876443
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.61 E-value=1.5e-15 Score=133.96 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY-------NSV-----LLCNRAACRSKLGQFEKAIEDCNAALNV-- 561 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-- 561 (608)
..+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34556679999999999999999999999999998 444 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 562 -----RPGYSKAR----LRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 562 -----~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999988765443
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=9.1e-14 Score=131.56 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=82.9
Q ss_pred chhHHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 040048 250 EPTSLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG----RLLEAVFECREAI 325 (608)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al 325 (608)
+|..+++......++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 35566666666778888888888888888888888888888765 567888888888877 6 7888888888885
Q ss_pred hhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCC
Q 040048 326 RIEPHYHRAHHRLANLYLR----LGEVEKAIYHFKHAGP 360 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 360 (608)
+ +.++.+++.||.+|.. .+++++|+.+|++++.
T Consensus 81 ~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 81 E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 4 5677888888888876 7778888888877766
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=8e-15 Score=129.26 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=114.7
Q ss_pred HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508 (608)
Q Consensus 429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~ 508 (608)
..|++++..+|++ ...++.+|.+++..|++++|+..|++++..+|++..++. .+|.++
T Consensus 5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~ 62 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL------------GLGACR 62 (142)
T ss_dssp ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHH------------HHHHHH
Confidence 5688889998875 889999999999999999999999999999999999886 899999
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
...|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|++++++.|+++.....+..+...+
T Consensus 63 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 63 QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876665555554433
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.59 E-value=2.4e-15 Score=133.71 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=111.4
Q ss_pred HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 040048 429 ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNAL 508 (608)
Q Consensus 429 ~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~ 508 (608)
..|++++.++|++ ..+++.+|.++...|++++|+..|++++..+|.+..++. .+|.++
T Consensus 8 ~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~ 65 (148)
T 2vgx_A 8 GTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL------------GLGACR 65 (148)
T ss_dssp CSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHH
T ss_pred hhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHH------------HHHHHH
Confidence 4567778888875 889999999999999999999999999999999999886 899999
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 570 (608)
...|++++|+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++++.|+++....
T Consensus 66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999998765543
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=5.3e-15 Score=135.46 Aligned_cols=131 Identities=17% Similarity=0.099 Sum_probs=119.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 040048 462 NLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAAC 541 (608)
Q Consensus 462 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 541 (608)
+...|++++|+..+++++..+|.+..++. .+|.++...|++++|+.+|++++.++|.++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678999999999999999999998876 899999999999999999999999999999999999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 542 -RSKLGQF--EKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 542 -~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
+...|++ ++|+.+|++++..+|++..+++.+|.+|..+|++++|+.+|+++++++|++.....
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 8899999 99999999999999999999999999999999999999999999999999865443
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=6.9e-14 Score=125.83 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..+..+|.++...|++++|+..|++++..+|.+..++. .+|.++...|++++|+.+|++++..+|.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 788999999999999999999999999999999988775 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRR--ADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
+.+++.+|.++..+|++++|+.+|++++++.|++..++..+ +..+...|++++|+..++++..+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 99999999999999999999999999999999999888554 555889999999999999987653
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.58 E-value=3.1e-14 Score=134.25 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
...++.+|.++...|++++|+..|++++ ++ +..++ ..+|.++...|++++|+.+|++++..+|.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRIC------------FNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5667889999999999999999999985 33 44444 489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS----------------KARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
+.+++.+|.++..+|++++|+.+|++++++.|++. .+++.+|.+|..+|++++|+.+|++++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999888766 99999999999999999999999999999
Q ss_pred CCCCH
Q 040048 596 APDDE 600 (608)
Q Consensus 596 ~P~~~ 600 (608)
+|++.
T Consensus 151 ~p~~~ 155 (213)
T 1hh8_A 151 KSEPR 155 (213)
T ss_dssp CCSGG
T ss_pred Ccccc
Confidence 99763
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=7.9e-13 Score=145.61 Aligned_cols=329 Identities=6% Similarity=-0.051 Sum_probs=193.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC--CCHH
Q 040048 259 STRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR---LLEAVFECREAIRIEP--HYHR 333 (608)
Q Consensus 259 ~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p--~~~~ 333 (608)
.+|.+.+.|..+.......++++.+...|++++...|.....|...+......|+ ++.+...|++++...| .+..
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4589999999999999999999999999999999999999999999999999999 9999999999999884 6788
Q ss_pred HHHHHHHHHHHcCCH--------HHHHHHHHHhCCC--C-CchhHHHHHHHHHHHHH---hHHHHHhhcHHHHHHHHHHH
Q 040048 334 AHHRLANLYLRLGEV--------EKAIYHFKHAGPE--A-DQVDIAKAKSLQAHLNK---CTDAKRTRDWNTLIQETRAA 399 (608)
Q Consensus 334 ~~~~la~~~~~~g~~--------~~A~~~~~~al~~--~-~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~a 399 (608)
.|..........++. +.....|++++.. . ++.....+.....+... ...+...++.+.+...|+++
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888887766665553 3344778877641 2 34332211111111100 00112334456666666666
Q ss_pred HHcCCCChHHHHHHHHHHHHH-------------cCChHH----------------------------------------
Q 040048 400 IAGGADSAPQIYALQAEALLK-------------LHKHQE---------------------------------------- 426 (608)
Q Consensus 400 l~~~~~~~~~~~~~la~~~~~-------------~g~~~e---------------------------------------- 426 (608)
+.........+|......-.. ..+|+.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 654222222222111110000 011111
Q ss_pred ---------------------------HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 040048 427 ---------------------------ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL-AAIQKA 478 (608)
Q Consensus 427 ---------------------------A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 478 (608)
....|++++...|. ...+|+..+..+...|+.++|. ..|+++
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~----------~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF----------APEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 22334444444443 3888999999999999999997 999999
Q ss_pred HHhCCCChHHHHHHHHHH--------------------------------------------HHHHHHHHHHHHHHcCCH
Q 040048 479 AKQDSNNKEVNMVMRKAK--------------------------------------------GVAAARSNGNALFKQAKF 514 (608)
Q Consensus 479 l~~~p~~~~~~~~l~~~~--------------------------------------------~~~~~~~lg~~~~~~g~~ 514 (608)
+...|.+...|..+.... ....|...+....+.|..
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 999999877665221100 001223333333344445
Q ss_pred HHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 515 SEAAAAYGDGLGL-DPYNSVLLCNRAACRSKLGQ-FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 515 ~eA~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
+.|..+|.+|++. .+....+|...|.+....++ ++.|...|+++++..|+++..|...+......|+.+.|..+|+++
T Consensus 451 ~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 451 AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555544 22223344444444444332 555555555555555555555555555555555555555555555
Q ss_pred HHhCC
Q 040048 593 KKEAP 597 (608)
Q Consensus 593 l~l~P 597 (608)
+...|
T Consensus 531 l~~~~ 535 (679)
T 4e6h_A 531 IDKIS 535 (679)
T ss_dssp TTTSS
T ss_pred HHhcC
Confidence 55554
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.57 E-value=5.7e-14 Score=134.22 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..++.+|..++..|++++|+..|++++...|.++.... +++.+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQ---------VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 788999999999999999999999999999998763211 23489999999999999999999999999987
Q ss_pred H---HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHH
Q 040048 532 S---VLLCNRAACRSK------------------LGQFEKAIEDCNAALNVRPGYSKAR-----------------LRRA 573 (608)
Q Consensus 532 ~---~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~la 573 (608)
. .+++.+|.++.. .|++++|+..|+++++..|++..++ +.+|
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 488999999886 5789999999999999999986554 6789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 574 DCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
.+|...|++++|+..|+++++.+|+++..
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 183 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQAT 183 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999999998743
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=4.2e-13 Score=134.70 Aligned_cols=235 Identities=9% Similarity=-0.054 Sum_probs=176.8
Q ss_pred hhHHHHhh--hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHc-C-CHHHHHHHHHHHH
Q 040048 251 PTSLCRAL--STRMDPETLKIMGNEDYKAG-NFAEALALYDAAISIDPNKASYRSNKTAALIAL-G-RLLEAVFECREAI 325 (608)
Q Consensus 251 a~~~~~~~--~~~~~~~~~~~lg~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~eA~~~~~~al 325 (608)
+..+...+ .+|.+..+|+..+.++...| .+++++.++++++..+|++..+|..++.++..+ + ++++++.++.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44444444 35889999999999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCC
Q 040048 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
+.+|.+..+|...+.++...|.++. ... ..+.++++.++++++.+|.
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~-----------~~~----------------------~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGR-----------ISE----------------------AQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTC-----------CCH----------------------HHHHHHHHHHHHHHHHCTT
T ss_pred HhCCCCHHHHHHHHHHHHHhccccc-----------cch----------------------hhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999988776540 000 1223444444444444444
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHH
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR-------FEDALAAIQKA 478 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a 478 (608)
+ ..+|..++.++...++ ++++++++.++
T Consensus 200 N---------------------------------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~a 234 (349)
T 3q7a_A 200 N---------------------------------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKS 234 (349)
T ss_dssp C---------------------------------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred C---------------------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 3 4555555655555554 78999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHhhcCC------CCCH
Q 040048 479 AKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF--------------------SEAAAAYGDGLGLD------PYNS 532 (608)
Q Consensus 479 l~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~--------------------~eA~~~~~~al~~~------p~~~ 532 (608)
+.++|++..+|. .+..++...|+. .+-...+...+... +..+
T Consensus 235 I~~~P~n~SaW~------------Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 235 IHLIPHNVSAWN------------YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHCTTCHHHHH------------HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHhCCCCHHHHH------------HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 999999999997 445555555542 33444444444433 4678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHH
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAAL-NVRPGYSKARLRRADC 575 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~ 575 (608)
.++..++.+|...|+.++|+++|+... +.+|-....|..++..
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 899999999999999999999999987 6688777777665543
No 130
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.56 E-value=2.5e-14 Score=128.99 Aligned_cols=111 Identities=31% Similarity=0.418 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 496 KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL------------------DPYNSVLLCNRAACRSKLGQFEKAIEDCNA 557 (608)
Q Consensus 496 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 557 (608)
..+..+..+|..++..|+|++|+..|.+++.+ +|....+|+++|.+|..+|++++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34556679999999999999999999999998 677778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHh
Q 040048 558 ALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDE-EVDQAL 606 (608)
Q Consensus 558 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~-~~~~~L 606 (608)
++.++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++ .+...|
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 555554
No 131
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.56 E-value=2.1e-13 Score=134.23 Aligned_cols=174 Identities=14% Similarity=0.030 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSN---- 484 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 484 (608)
..+..+|.++...|++++|+.++.+.+..+|.. ++.+++..++.++..+|+.+.|.+.++++.+.+|+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAE--------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 455688999999999999999999988777621 24899999999999999999999999999999883
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 485 NKEVNMVMRKAKGVAAARSNGNALFKQA--KFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 485 ~~~~~~~l~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
+..+...+ .-|++.+..| ++.+|..+|+++....|+ ....+++ ++..+|++++|...++.+++
T Consensus 173 ~d~~l~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 173 DNEMILNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred chHHHHHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence 12222211 3344466556 999999999999988886 3444444 89999999999999998887
Q ss_pred c----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040048 561 V----------RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 561 ~----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 605 (608)
. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 6 48899999999999999998 8999999999999999987653
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=2.1e-14 Score=146.15 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=143.4
Q ss_pred ccccccC----ccCCCCCCCCccccccccccCC-------CcccccccCCCCCCCCCCcchhHHHHhh--hCCCCHHHHH
Q 040048 202 GVRGNNN----TNKNNNRYPNSVMGNVVKKQND-------HPQNHYNYNPPKPASSSSAEPTSLCRAL--STRMDPETLK 268 (608)
Q Consensus 202 A~~~~~~----~~~~~~~~~~a~lg~i~~~~~~-------~a~~~y~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~ 268 (608)
|+..+.. ++.+.|.++....|......+. .+...|..++... ... ..+.++.+++
T Consensus 84 al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~------------~~a~~~~p~~a~~~~ 151 (336)
T 1p5q_A 84 AIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESW------------EMNSEEKLEQSTIVK 151 (336)
T ss_dssp HHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGG------------GCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchh------------cCCHHHHHHHHHHHH
Confidence 5555555 7778888866667655432222 1223333332221 111 1355688999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNK---------------ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHR 333 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 333 (608)
.+|.+++..|+|++|+.+|++++.++|++ ..+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999998 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH-HHHHHHH
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI-QETRAAI 400 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al 400 (608)
+++.+|.+|..+|++++|+..|++++. ++|.+ ..++..++.++...++++++. ..|.+++
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~~------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQ-LYPNN------KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99988 567788888888888888884 4555544
No 133
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=3.7e-12 Score=140.32 Aligned_cols=340 Identities=9% Similarity=-0.049 Sum_probs=247.0
Q ss_pred hHHHHhhh--CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCCH----HH----
Q 040048 252 TSLCRALS--TRMDPETLKIMGNEDYKAGN---FAEALALYDAAISIDP--NKASYRSNKTAALIALGRL----LE---- 316 (608)
Q Consensus 252 ~~~~~~~~--~~~~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~e---- 316 (608)
...+...+ -|.....|...+......|+ ++.+..+|++++...| .+...|..........++. ++
T Consensus 86 R~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~ 165 (679)
T 4e6h_A 86 YETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI 165 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHH
Confidence 44444443 37889999999999999999 9999999999999984 5677888877666665553 33
Q ss_pred HHHHHHHHHh---h-CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHhCCCCCchhHHHHHH----H------
Q 040048 317 AVFECREAIR---I-EPHYHRAHHRLANLYL---------RLGEVEKAIYHFKHAGPEADQVDIAKAKS----L------ 373 (608)
Q Consensus 317 A~~~~~~al~---~-~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~p~~~~~~~~----~------ 373 (608)
....|++++. . ++....+|........ ..++.+.+..+|.+++. +.......... .
T Consensus 166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCc
Confidence 4478888876 3 6777778877766543 34457888999999986 53322111000 0
Q ss_pred -----------------HHHHHH----------------------------------hHHHHHh-----h---------c
Q 040048 374 -----------------QAHLNK----------------------------------CTDAKRT-----R---------D 388 (608)
Q Consensus 374 -----------------~~~~~~----------------------------------~~~~~~~-----~---------~ 388 (608)
...+.. ...+... . .
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 000000 0000000 0 1
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHH-HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC
Q 040048 389 WNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEAD-ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR 467 (608)
Q Consensus 389 ~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~-~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~ 467 (608)
.......|++++...|.. +.+|...+..+...|+.++|. .+|++++...|.. ..+|+.++.+....|+
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~-~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s----------~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFA-PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS----------AVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhCC
Confidence 123446788888888875 689999999999999999997 9999999988874 7889999999999999
Q ss_pred HHHHHHHHHHHHHhC-----------CC-----------ChHHHHHHHHHH-------H----------------HHHHH
Q 040048 468 FEDALAAIQKAAKQD-----------SN-----------NKEVNMVMRKAK-------G----------------VAAAR 502 (608)
Q Consensus 468 ~~~A~~~~~~al~~~-----------p~-----------~~~~~~~l~~~~-------~----------------~~~~~ 502 (608)
+++|...|++++... |. ...+|..+.... . ...|.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 999999999999752 43 222343332210 0 11223
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHH
Q 040048 503 SNGNALFKQA-KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG---YSKARLRRADCFAK 578 (608)
Q Consensus 503 ~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~ 578 (608)
..|.+....+ +++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|......-..
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3344444444 5899999999999999999999999999999999999999999999999883 56788888888899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040048 579 IEKWEASMQDYEILKKEAPDDEEVD 603 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~P~~~~~~ 603 (608)
.|+.+.+...++++.+..|+++.+.
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 9999999999999999999987654
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=4.3e-14 Score=127.76 Aligned_cols=105 Identities=31% Similarity=0.389 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
+..+..+|.+++..|++++|+.+|++++.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..+|+.+|.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 578 KIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
.+|++++|+.+|+++++++|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHH
Confidence 9999999999999999999999873
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=2.7e-14 Score=122.20 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
+.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHH
Q 040048 582 WEASMQDYEILKKEAPDDEE 601 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~~~~ 601 (608)
+++|+..|+++++++|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998764
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=2.7e-13 Score=127.80 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEV 488 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 488 (608)
..++.+|.++...|++++|+..|++++ .|. +.++..+|.++...|++++|+..|++++..+|.+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CCC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 346778999999999999999999996 332 7899999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH----------------HHHHHHHHHHHHcCCHHHHH
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS----------------VLLCNRAACRSKLGQFEKAI 552 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~ 552 (608)
+. .+|.++...|++++|+..|++++...|.+. .+++++|.++..+|++++|+
T Consensus 74 ~~------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 74 YF------------QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HH------------HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH------------HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 75 899999999999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhcCCCCHH
Q 040048 553 EDCNAALNVRPGYSK 567 (608)
Q Consensus 553 ~~~~~al~~~p~~~~ 567 (608)
.+|++++++.|++..
T Consensus 142 ~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 142 EQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHTTCCSGGG
T ss_pred HHHHHHHHcCccccc
Confidence 999999999998743
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.1e-13 Score=119.01 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..+..+|..++..|++++|+..|++++.++|++..++. .+|.++...|++++|+..|++++.++|++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS------------NRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 788999999999999999999999999999999988876 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHc
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVR------PGYSKARLRRADCFAKI 579 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~ 579 (608)
+.+++.+|.++..+|++++|+..|+++++++ |++..++..++.+..++
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999888887653
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.2e-14 Score=157.98 Aligned_cols=135 Identities=12% Similarity=-0.037 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCC
Q 040048 452 ANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDGLGLD 528 (608)
Q Consensus 452 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~ 528 (608)
..+|..++.++...+ +++++++.+.++++.+|.+..+|. ..+.++...| .++++++++.++++.+
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~------------~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWD------------YRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHH------------HHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 788888999999999 779999999999999999999987 8889999999 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----------
Q 040048 529 PYNSVLLCNRAACRSKL--------------GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEA---------- 584 (608)
Q Consensus 529 p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---------- 584 (608)
|.+..+|+.++.++..+ +.+++|++++.+|+.++|++..+|+.++.++...+++++
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~ 254 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREE 254 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTT
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCC
Confidence 99999999999999885 568999999999999999999999999999999888666
Q ss_pred --HHHHHHHHHHhCCC
Q 040048 585 --SMQDYEILKKEAPD 598 (608)
Q Consensus 585 --A~~~~~~al~l~P~ 598 (608)
|+.+|.+++.++|.
T Consensus 255 ~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 255 ACLSVCFSRPLTVGSR 270 (567)
T ss_dssp TEEEEEEEEEECTTBT
T ss_pred ceEEEEeccceecccc
Confidence 55556666666664
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.54 E-value=1.4e-14 Score=135.40 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=125.4
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM--- 490 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--- 490 (608)
.+......|++++|.+.+.......+. .+..+..+|..++..|++++|+..|++++.+.|.++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQ----------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 345555667777777666655433332 2778999999999999999999999999999888761100
Q ss_pred -HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 040048 491 -VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 491 -~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
..........+..+|.++...|++++|+.+|++++.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..++
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 159 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH
Confidence 0000111234569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 040048 570 LRRADCFAKIEKWEASM-QDYEILKKE 595 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~-~~~~~al~l 595 (608)
..++.++..+++..++. ..|.+.+..
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 160 NSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998887 555555543
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.54 E-value=1.9e-13 Score=117.57 Aligned_cols=133 Identities=26% Similarity=0.354 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
++|+.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC
Q 040048 345 LGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA 404 (608)
Q Consensus 345 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 404 (608)
.|++++|+..+++++. ..|.+ ...+..++.++...|++++|+..+.+++..+|
T Consensus 82 ~~~~~~A~~~~~~~~~-~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHH-hCCCC------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999887 66655 33455555666666666666666666655544
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=9.4e-14 Score=138.45 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=136.5
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
..+..+...|++++|+..+++++...+....... ....+..+|.++...+++++|+.+|++++...+...+...
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-- 153 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ----FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-- 153 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH----HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--
Confidence 3466777888888888888887776554321100 0234446899999999999999999999997655443211
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY 565 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 565 (608)
.+.++..+|.+|...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++++++++.+..
T Consensus 154 ----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 154 ----NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 2334569999999999999999999999952 22335689999999999999999999999999976443
Q ss_pred ------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 040048 566 ------SKARLRRADCFAKIE-KWEASMQDYEILKKEA 596 (608)
Q Consensus 566 ------~~a~~~la~~~~~~g-~~~~A~~~~~~al~l~ 596 (608)
+.+++.+|.+|..+| ++++|+++|++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999999864
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=3.5e-14 Score=125.22 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------Chh-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPN-------KAS-----YRSNKTAALIALGRLLEAVFECREAIRI--- 327 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~~~~al~~--- 327 (608)
.+..++.+|..++..|+|++|+.+|+++|+++|+ +.. +|.++|.++..+|++++|+.+|+++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4678899999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 328 ----EPHYHRAH----HRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 328 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+|++..+| +++|.++..+|++++|+..|+++++ ++|++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle-l~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE-MIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-cCCCc
Confidence 99999999 9999999999999999999999999 88877
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.52 E-value=1.7e-13 Score=136.59 Aligned_cols=176 Identities=15% Similarity=0.079 Sum_probs=135.2
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM 490 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 490 (608)
+...+..+...|++++|+..+.++++..+...... .....+..+|.++...|++++|+..|++++...+.....+.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ----QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH----HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 33456666777777777777776665544321110 01455677899999999999999999999987665432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 491 VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGL---GLDPYNS----VLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 491 ~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
.+.++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.+|++++++.+
T Consensus 154 ------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 154 ------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 13345699999999999999999999999 4455543 6899999999999999999999999998753
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 040048 564 G------YSKARLRRADCFAKIEKWEAS-MQDYEILKKEA 596 (608)
Q Consensus 564 ~------~~~a~~~la~~~~~~g~~~~A-~~~~~~al~l~ 596 (608)
+ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 278899999999999999999 88899998764
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.52 E-value=3.1e-13 Score=115.77 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
...+..+|.++...|++++|+..|++++...|++..++. .+|.++...|++++|+.++++++...|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFC------------NRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 788999999999999999999999999999999887765 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKW 582 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 582 (608)
+.+++.+|.++...|++++|+.+|++++++.|++..++..+|.++..+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998875
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=4e-13 Score=120.72 Aligned_cols=134 Identities=20% Similarity=0.340 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLY 342 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 342 (608)
.+..++.+|..++..|++++|+.+|++++..+|.+..++..+|.++...|++++|+.+|++++.++|++..+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048 343 LRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA 401 (608)
Q Consensus 343 ~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 401 (608)
..+|++++|+..|++++. +.|.+.. ....+..+..+...|++++|+..+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~-~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVK-VKPHDKD----AKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHH-HSTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH-hCCCCHH----HHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998 8887732 22335556667778888888888776543
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.51 E-value=5.8e-14 Score=121.21 Aligned_cols=101 Identities=25% Similarity=0.387 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY-------HRAHH 336 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~ 336 (608)
+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999998765 35889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCCCch
Q 040048 337 RLANLYLRLGEVEKAIYHFKHAGPEADQV 365 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~al~~~~p~ 365 (608)
.+|.++..+|++++|+..|++++. ..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS-EFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-hCcC
Confidence 999999999999999999999987 5554
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-13 Score=117.92 Aligned_cols=120 Identities=15% Similarity=0.192 Sum_probs=110.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 529 (608)
.....+..+|.++...|++++|+..|++++..+|.+..++. .+|.++...|++++|+.+|++++..+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYS------------NRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHH------------HHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 35889999999999999999999999999999998877765 889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 530 YNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 530 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
.+..+++.+|.++...|++++|+.+|++++.++|.+..++..++.++..+|+
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999988774
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=3.1e-13 Score=146.77 Aligned_cols=162 Identities=9% Similarity=-0.038 Sum_probs=151.3
Q ss_pred ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR----------FEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
..++|+..+.+++..+|++ ..+|..++.++...|+ +++++..++++++.+|.+..+|.
T Consensus 44 ~~eeal~~~~~~l~~nP~~----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~-- 111 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH-- 111 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred CCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 3467788999999988885 8899999999999888 99999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHH
Q 040048 493 RKAKGVAAARSNGNALFKQA--KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG-QFEKAIEDCNAALNVRPGYSKAR 569 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~ 569 (608)
..+.++...+ ++++|+++++++++.+|.+..+|..++.++..+| .+++++++++++++.+|.+..+|
T Consensus 112 ----------hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 112 ----------HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp ----------HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred ----------HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 8899999999 7799999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 570 LRRADCFAKI--------------EKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 570 ~~la~~~~~~--------------g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
..++.++..+ +.+++|++++.+++.++|+|..+|..+
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999986 668999999999999999999998765
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.8e-13 Score=123.60 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+..+..+|.+++..|++++|+..|++++.++|++..++. .+|.++...|++++|+.+|++++.++|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS------------NRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4889999999999999999999999999999999988876 8999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
+..+|+.+|.+|..+|++++|+.+|+++++++|++..+|+.++....
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887776665543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=4.1e-14 Score=132.25 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---
Q 040048 456 VVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS--- 532 (608)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~--- 532 (608)
...+......|+++++.+.+.......+.. +..+..+|..++..|+|++|+.+|++++.+.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 75 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD 75 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence 345556667777777777766444332222 33445899999999999999999999999998887
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 533 -------------VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 533 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
.++.++|.++..+|++++|+.+|++++.++|++..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 040048 600 EEVDQALQ 607 (608)
Q Consensus 600 ~~~~~~L~ 607 (608)
..++..|.
T Consensus 156 ~~~~~~l~ 163 (198)
T 2fbn_A 156 LDIRNSYE 163 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887663
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=2.2e-13 Score=118.55 Aligned_cols=105 Identities=30% Similarity=0.513 Sum_probs=100.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
..+|.+++..|++++|+.+|++++..+|.++.+++.+|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-----CHHHHHHh
Q 040048 582 WEASMQDYEILKKEAPD-----DEEVDQAL 606 (608)
Q Consensus 582 ~~~A~~~~~~al~l~P~-----~~~~~~~L 606 (608)
+++|+.+|+++++++|+ +..+...|
T Consensus 93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l 122 (137)
T 3q49_B 93 YDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHHHHHHHHHH
Confidence 99999999999999998 67766655
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=5.5e-13 Score=112.01 Aligned_cols=110 Identities=27% Similarity=0.498 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
+..+..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|+++.+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 578 KIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
.+|++++|+.+|+++++++|++..++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999887664
No 153
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=3e-14 Score=151.35 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=130.1
Q ss_pred HcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKE---VNMVMRKAK 496 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~ 496 (608)
.++++++|+..++.++...|+. +..+..+|.+++..|+|++|+..|++++.+.|.+.. .........
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~----------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~ 315 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ----------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 4556667777777766665553 789999999999999999999999999999998831 000000111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 497 GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 497 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
.+..+.++|.++..+|+|++|+.+|++++.++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 23455699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHH
Q 040048 577 AKIEKWEASMQ 587 (608)
Q Consensus 577 ~~~g~~~~A~~ 587 (608)
..++++++|..
T Consensus 396 ~~~~~~~~a~~ 406 (457)
T 1kt0_A 396 KKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.49 E-value=1.9e-13 Score=116.87 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCchh
Q 040048 346 GEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~~ 366 (608)
|++++|+..|++++. ++|.+
T Consensus 99 g~~~~A~~~~~~al~-~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLL-SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHH-hCcCC
Confidence 999999999999998 87765
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.8e-12 Score=129.17 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=144.7
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH-----HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccC
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP-----QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFG 447 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~ 447 (608)
...+...+..+...+++++|+..+.++++..+.... ..+..+|.++...|++++|+..+++++...+.....+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-- 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-- 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT--
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH--
Confidence 445667788889999999999999999998776432 3456788999999999999999999987765432221
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 448 PIGNANLLVVRAQVNLACGRFEDALAAIQKAA---KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524 (608)
Q Consensus 448 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 524 (608)
....++..+|.+|...|++++|+.+|++++ +..+++.... +.++.++|.+|...|++++|+.+|+++
T Consensus 153 --~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 153 --QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 126789999999999999999999999999 4556554322 134569999999999999999999999
Q ss_pred hcCCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 040048 525 LGLDPY------NSVLLCNRAACRSKLGQFEKA-IEDCNAALNV 561 (608)
Q Consensus 525 l~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 561 (608)
+.+.+. .+.+++++|.+|..+|++++| ..+|++++.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 987432 278999999999999999999 8889999875
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=5e-13 Score=115.14 Aligned_cols=109 Identities=24% Similarity=0.488 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
.++..+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+.+|++++++.|++..+++.+|.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 579 IEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|++++|+.+|+++++++|++..++..|.
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 125 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQ 125 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999988876653
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=9.4e-14 Score=127.05 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=115.4
Q ss_pred HHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040048 418 LLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG 497 (608)
Q Consensus 418 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 497 (608)
+...|++++|+..+++++..+|++ ..++..+|.++...|++++|+..|++++.++|++..++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------- 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA------- 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH-------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------
Confidence 345677888888888888888864 899999999999999999999999999999999988775
Q ss_pred HHHHHHHHHH-HHHcCCH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048 498 VAAARSNGNA-LFKQAKF--SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570 (608)
Q Consensus 498 ~~~~~~lg~~-~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 570 (608)
.+|.+ +...|++ ++|+.+|++++..+|.+..+++.+|.++...|++++|+..|+++++++|++.....
T Consensus 83 -----~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 83 -----ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp -----HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 88999 8899999 99999999999999999999999999999999999999999999999999865443
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.46 E-value=2.4e-12 Score=109.12 Aligned_cols=117 Identities=29% Similarity=0.377 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..++..+|.++...|++++|+..|++++...|.+..++. .+|.++...|++++|+.+|++++...|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 677888888889999999999999999888888777664 78888888899999999999998888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
..++..+|.++...|++++|+.+|++++...|++..++..+|.++...|
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888889999999999999999999999888888888888888887654
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-12 Score=114.31 Aligned_cols=106 Identities=34% Similarity=0.521 Sum_probs=101.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
..+|..+...|++++|+.+|++++..+|++ ..++..+|.++...|++++|+.+|++++.+.|++..+++.+|.++..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 489999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 579 IEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 579 ~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+|++++|+.+|+++++++|++..++..+.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 99999999999999999999999887663
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=2.1e-12 Score=108.37 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+..+..+|.++...|++++|+..|++++...|.+..++. .+|.++...|++++|+..+++++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS------------NRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH------------HHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 3788999999999999999999999999999999988775 8999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999888753
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=1.2e-12 Score=112.49 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS---VLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY---SKARLRRAD 574 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 574 (608)
++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45889999999999999999999999999887 799999999999999999999999999999999 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 575 CFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 575 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
++..+|++++|+..|+++++.+|+++.+...+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999999999999999999876643
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=2.5e-12 Score=110.01 Aligned_cols=109 Identities=33% Similarity=0.563 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFA 577 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 577 (608)
...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|+++.+++.+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 578 KIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 578 ~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.+|++++|+.+|+++++++|++..++..+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNL 120 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999999999999999999887765
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=5.2e-13 Score=120.27 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQ--------DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGD 523 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 523 (608)
+..+..+|..++..|++++|+..|.+++.+ .|.+..... ........+.++|.++...|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE--LDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH--HHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 788999999999999999999999999998 444432110 0112234556999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHH
Q 040048 524 GLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYS-KARLRRADCFAKIEKWE 583 (608)
Q Consensus 524 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~ 583 (608)
++.++|.++.+|+.+|.+|..+|++++|+.+|+++++++|++. .+...++.+...+++..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 66778888776665443
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=2e-13 Score=120.15 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=92.3
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 509 FKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQF----------EKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 509 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
.+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 579 IE-----------KWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 579 ~g-----------~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
+| ++++|+++|++|++++|++...+..|.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 85 899999999999999999999888763
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=1.1e-12 Score=130.51 Aligned_cols=177 Identities=12% Similarity=-0.009 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS------YRSNKTAALIALGRLLEAVFECREAIRIEPHY------HR 333 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 333 (608)
.+...+..++..|+|++|+.+|++++...+..+. .+..+|.++...|++++|+.+|++++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445678899999999999999999998777654 34458888888999999999999999865432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh-HHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHH
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD-IAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYA 412 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 412 (608)
++..+|.+|..+|++++|+.+|++++. ..... ..... ...++.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~~~~~~-----------------------------------~~~~~~ 200 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALHDNEEF-----------------------------------DVKVRY 200 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSSCCHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcccchhH-----------------------------------HHHHHH
Confidence 789999999999999999999999874 11000 00011 134566
Q ss_pred HHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 040048 413 LQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACG-RFEDALAAIQKAAKQD 482 (608)
Q Consensus 413 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 482 (608)
.+|.+|..+|++++|+.++++++++.+...... ..+.++..+|.++..+| ++++|+..|++++.+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMA----LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT----THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 777777777777777777777776544322111 23789999999999999 5799999999998754
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=4.2e-13 Score=142.52 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK---------------ASYRSNKTAALIALGRLLEAVFECREAI 325 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al 325 (608)
+..+..++.+|..++..|+|++|+.+|++++.++|.+ ..+|+++|.||..+|++++|+.+|++++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998 6899999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHH
Q 040048 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLI 393 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 393 (608)
+++|++..+|+.+|.+|..+|++++|+..|++++. ++|++ ..++..++.++...+++.++.
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-l~P~~------~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-VNPQN------KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCC------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99987 455666666666666666554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.43 E-value=1.4e-12 Score=113.36 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 530 (608)
.+..+..+|.+++..|++++|+..|++++..+|++..++. .+|.++...|++++|+.+|++++.++|+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT------------NRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 4899999999999999999999999999999999988876 8999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCC
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG-----YSKARLRRADCFAKIEK 581 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~ 581 (608)
++.+++.+|.++..+|++++|+.+|++++++.|+ ...++..+..+..+...
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888 66777777776655443
No 168
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=3.6e-12 Score=125.46 Aligned_cols=260 Identities=14% Similarity=0.080 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNK-ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLAN 340 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 340 (608)
.+|+.++.+= -.|-.|+|..++.-. -++.|.+ ....+.+.++|+.+|++.... ..+....+...++.
T Consensus 12 ~~~~~lf~ik-n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNIK-QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHHH-HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred CCcHHHHHHH-HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence 4555566544 356689999888843 3444444 345667778888899887421 12223334445554
Q ss_pred HHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHH
Q 040048 341 LYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGA-DSAPQIYALQAEALL 419 (608)
Q Consensus 341 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~la~~~~ 419 (608)
.+. ++ |+..+++.+. ..+.. ...++.++.++...|++++|+..+.+.+..+| ....+++..++.+++
T Consensus 80 ~~~--~~---a~~~l~~l~~-~~~~~------~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLK-DKQNS------PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTT-TSCCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHh-cCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 7888888876 43232 23345778888889999999999999988877 456789999999999
Q ss_pred HcCChHHHHHHhhcCCCCCCc-----ccccccCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHH
Q 040048 420 KLHKHQEADETLKNGPNFDVD-----ETTRFFGPIGNANLLVVRAQVNLACG--RFEDALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 420 ~~g~~~eA~~~l~~al~~~p~-----~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l 492 (608)
.+|+.+.|.+.++++.+.+|+ + ...+.+.-|++.+..| ++.+|...|+++....|+......
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d---------~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l-- 216 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDN---------EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG-- 216 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHH---------HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH--
T ss_pred HCCCHHHHHHHHHHHHhcCccccccch---------HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH--
Confidence 999999999999998888872 2 1333444455577667 999999999999888876222221
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR 562 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 562 (608)
.+. ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+..
T Consensus 217 ----------Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 217 ----------LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp ----------HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ----------HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 222 899999999999999988876 48899999999999999998 9999999999999
Q ss_pred CCCHHHH
Q 040048 563 PGYSKAR 569 (608)
Q Consensus 563 p~~~~a~ 569 (608)
|+++.+.
T Consensus 284 P~hp~i~ 290 (310)
T 3mv2_B 284 HEHAFIK 290 (310)
T ss_dssp CCCHHHH
T ss_pred CCChHHH
Confidence 9998654
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.42 E-value=4.6e-12 Score=107.35 Aligned_cols=108 Identities=28% Similarity=0.419 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
.+..+|.++...|++++|+.+|++++...|.+..+++.+|.++...|++++|+.+|++++...|++..++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 580 EKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
|++++|+.+|+++++++|++..++..|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999887653
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=9.1e-13 Score=109.60 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--YSKARLRRADCFAKI- 579 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~- 579 (608)
.+|.++...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++..|+ +..+++.+|.++..+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 040048 580 EKWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 580 g~~~~A~~~~~~al~l~P~~~ 600 (608)
|++++|+++|++++...|.++
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCCC
T ss_pred CCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999763
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=1.7e-12 Score=120.99 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=125.3
Q ss_pred HHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040048 419 LKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGV 498 (608)
Q Consensus 419 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 498 (608)
+..|++++|...++.... +|. ....++..+|.++...|++++|+..+++++.+........ ..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~ 66 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA---------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT------AEH 66 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH------HHH
T ss_pred cccccHHHHHHHHHHhcC-ChH---------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH------HHH
Confidence 456788888882222221 221 1388999999999999999999999999998544322111 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGL---DPY----NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG--Y---- 565 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~---- 565 (608)
..+..+|.++...|++++|+.+|++++.+ .++ ...++.++|.++...|++++|+.++++++.+.+. +
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34569999999999999999999999987 442 3567899999999999999999999999976322 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 566 SKARLRRADCFAKIEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 566 ~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P 597 (608)
..++..+|.++...|++++|+.+|++++++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999998743
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=8.6e-14 Score=148.51 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..+..+|.++...|++++|+..|+++++++|++..++. .+|.++...|++++|+.+|+++++++|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG------------NRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 445566788889999999999999999999999988876 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC--FAKIEKWEASMQDYE-----------ILKKEAPD 598 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~-----------~al~l~P~ 598 (608)
+.+++++|.+|..+|++++|+++|+++++++|++..++..++.+ +..+|++++|++.++ ++++++|+
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999998 899999999999999 77777776
Q ss_pred C
Q 040048 599 D 599 (608)
Q Consensus 599 ~ 599 (608)
.
T Consensus 154 ~ 154 (477)
T 1wao_1 154 Y 154 (477)
T ss_dssp C
T ss_pred c
Confidence 4
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=2.9e-13 Score=144.41 Aligned_cols=139 Identities=20% Similarity=0.283 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYL 343 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 343 (608)
+++++.+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHH--HHHc
Q 040048 344 RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEA--LLKL 421 (608)
Q Consensus 344 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~--~~~~ 421 (608)
.+|++++|+..|+++++ ++|++ ..++..++.+ +...
T Consensus 86 ~~g~~~eA~~~~~~al~-~~p~~-----------------------------------------~~~~~~l~~~~~~~~~ 123 (477)
T 1wao_1 86 ALGKFRAALRDYETVVK-VKPHD-----------------------------------------KDAKMKYQECNKIVKQ 123 (477)
T ss_dssp HHTCHHHHHHHHHHHHH-HSTTC-----------------------------------------TTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCC-----------------------------------------HHHHHHHHHHHHHHHH
Confidence 99999999999999988 66665 2334444554 6667
Q ss_pred CChHHHHHHhh-----------cCCCCCCccccc
Q 040048 422 HKHQEADETLK-----------NGPNFDVDETTR 444 (608)
Q Consensus 422 g~~~eA~~~l~-----------~al~~~p~~~~~ 444 (608)
|++++|+..++ +++...|+....
T Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 77778888777 777777765433
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=2.7e-13 Score=138.05 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNM-----VMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
+..+..+|..++..|++++|+..|++++.+.|.+..... ..........+.++|.++...|+|++|+.+|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778889999999999999999999999999988652100 000000123567999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC-FAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 527 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|.+++...|+++..
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 455678889999999999999988754
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.4e-12 Score=110.86 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 451 NANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNN---KEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
....+..+|..+...|++++|+..|++++...|++ ..++ ..+|.++...|++++|+.+|++++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLH------------RNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHH------------HHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999987 3333 48999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
+|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999888887543
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=4.3e-12 Score=108.61 Aligned_cols=108 Identities=26% Similarity=0.358 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY-------SKARL 570 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~ 570 (608)
+..+..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++...|++ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999998877 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 571 RRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 571 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.+|.++...|++++|+.+|++++++.| ++.+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 999999999999999999999999999 57666554
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=6.8e-12 Score=107.69 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 040048 453 NLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK---EVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP 529 (608)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 529 (608)
..++.+|.+++..|++++|+..|++++...|++. .++ +.+|.++...|++++|+.+|++++...|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNAL------------YWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999987 444 4899999999999999999999999999
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 530 YN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 530 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
++ +.+++.+|.++..+|++++|+..|++++...|++..+...+..+....++
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99 89999999999999999999999999999999998887777666555444
No 178
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=8.1e-10 Score=118.01 Aligned_cols=315 Identities=7% Similarity=-0.080 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhh---CCCCHHHHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR-LLEAVFECREAIRI---EPHYHRAHHRLA 339 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~---~p~~~~~~~~la 339 (608)
+...+..+...+-.|+++.+..+|++++...| +...|..........+. .+.....|+.++.. ++.....|....
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 44555555555666999999999999999988 77788888877777663 45677788888874 678889998888
Q ss_pred HHHH----HcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH--------hHHHHHhhcHHHHHHHHHHHHHcCCCCh
Q 040048 340 NLYL----RLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNK--------CTDAKRTRDWNTLIQETRAAIAGGADSA 407 (608)
Q Consensus 340 ~~~~----~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~al~~~~~~~ 407 (608)
..+. ..++.+.+...|++++. +..............+.. .........+..|...|..+....+...
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 7765 35678899999999998 654443222111111110 0111223445555555555554322222
Q ss_pred HHHHHHHHHHHHHc--CC-----hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 408 PQIYALQAEALLKL--HK-----HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK 480 (608)
Q Consensus 408 ~~~~~~la~~~~~~--g~-----~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (608)
...|......-... +- .+.....|++++...|.. ..+|+..+..+...|+.++|...|++++.
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~----------~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA----------EEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33454433332221 11 344677899998877764 89999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHH----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCH
Q 040048 481 QDSNNKEVNMVMRKAK----------------------------GVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNS 532 (608)
Q Consensus 481 ~~p~~~~~~~~l~~~~----------------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 532 (608)
. |.+...+..+.... ....|...+....+.+..+.|..+|+++ ...+...
T Consensus 242 ~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~ 319 (493)
T 2uy1_A 242 M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGP 319 (493)
T ss_dssp H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCH
T ss_pred C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCCh
Confidence 9 99877665443320 0123455556666678899999999999 4433456
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 533 VLLCNRAACRSKLG-QFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 533 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
.+|...|.+....+ +.+.|...|+.+++..|+.+..|...+......|+.+.|...|+++
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777787777666 6999999999999999999988888888888999999999998887
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.39 E-value=1.3e-12 Score=121.77 Aligned_cols=173 Identities=12% Similarity=-0.003 Sum_probs=120.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC
Q 040048 274 DYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI------EPHYHRAHHRLANLYLRLGE 347 (608)
Q Consensus 274 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 347 (608)
++..|++++|+..++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999999666655533366789999999999999999999999999984 34446789999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhH-HHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHH
Q 040048 348 VEKAIYHFKHAGPEADQVDI-AKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQE 426 (608)
Q Consensus 348 ~~~A~~~~~~al~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~e 426 (608)
+++|+..+++++. +..... ..... ..++..+|.++...|++++
T Consensus 82 ~~~A~~~~~~al~-~~~~~~~~~~~~-----------------------------------~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 82 WDAARRCFLEERE-LLASLPEDPLAA-----------------------------------SANAYEVATVALHFGDLAG 125 (203)
T ss_dssp HHHHHHHHHHHHH-HHHHSCCCHHHH-----------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHH-HHHHcCccHHHH-----------------------------------HHHHHHHHHHHHHhCCHHH
Confidence 9999999999876 311110 00011 2345555666666666666
Q ss_pred HHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040048 427 ADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNK 486 (608)
Q Consensus 427 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 486 (608)
|+..+++++...+...... ....++..+|.++...|++++|+..+++++.+.....
T Consensus 126 A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 126 ARQEYEKSLVYAQQADDQV----AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 6666666554322111111 1256678899999999999999999999988755443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.38 E-value=6.4e-13 Score=112.66 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=87.1
Q ss_pred HcCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 510 KQAKFSEAAAAYGDGLGL---DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASM 586 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 586 (608)
..|++++|+.+|+++++. +|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 040048 587 QDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 587 ~~~~~al~l~P~~~~~~~ 604 (608)
..|+++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999998754
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.1e-12 Score=137.82 Aligned_cols=219 Identities=6% Similarity=-0.025 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-----------------YRSNKTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~ 326 (608)
|.+....|..+...|+|++|++.|.++++..|.... ++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677888899999999999999999998887532 466777777777777777777777776
Q ss_pred hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHH
Q 040048 327 IEPHYH------RAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAI 400 (608)
Q Consensus 327 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 400 (608)
+.+... .+...++.++...|++++|+..+++++. ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---------------------------------- 128 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE-FAKRE---------------------------------- 128 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH-HHHHS----------------------------------
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHh----------------------------------
Confidence 544331 2344556666666666666666666543 11111
Q ss_pred HcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 401 AGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK 480 (608)
Q Consensus 401 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 480 (608)
........++..+|.++...|++++|+..+++++.......+ ......++..++.+|...|++++|...+++++.
T Consensus 129 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 129 -KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD----KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp -SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 011123457778888888888888888888776543221111 112378999999999999999999999999988
Q ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 481 QDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 481 ~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
..+........ ....+..+|.++...++|.+|..+|.+++..
T Consensus 204 ~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 204 AANSIYCPTQT-----VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHSCCCHHH-----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HhhcCCCchHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 65432211100 1223457899999999999999999999864
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.37 E-value=1.5e-12 Score=108.24 Aligned_cols=106 Identities=25% Similarity=0.307 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YHRAHHR 337 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~ 337 (608)
.|.++..++.+|.+++..|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHhCCCCCchh
Q 040048 338 LANLYLRL-GEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 338 la~~~~~~-g~~~~A~~~~~~al~~~~p~~ 366 (608)
+|.++... |++++|+.++++++. ..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL-EHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG-GCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh-cccCC
Confidence 99999999 999999999999988 66543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=4.1e-12 Score=112.99 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
..++..+|.++...|++++|+..+++++.+.+....... .+.++..+|.++...|++++|+.+|++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999999999988654322111 13345689999999999999999999999875432
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 532 ------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG------YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 532 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
..++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++|++++++++++....
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999987432 25678999999999999999999999999886543
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=6.9e-12 Score=129.12 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVN----MVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
+..+..+|..++..|++++|+..|++++++.+...... ..-........+.++|.++..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 67788999999999999999999999998433321000 00000112345569999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 528 DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQD 588 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 588 (608)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888654
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.34 E-value=9.8e-12 Score=106.36 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 040048 452 ANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYN 531 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 531 (608)
+..+..+|.++...|++++|+..|++++...|.+..++. .+|.++...|++++|+.+|++++...|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT------------NQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHH------------HHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 778999999999999999999999999999999987765 89999999999999999999999998876
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 040048 532 -------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEK 581 (608)
Q Consensus 532 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 581 (608)
..+++.+|.++...|++++|+.+|++++++.| ++..+..++.+...+++
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998 58888888888766543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.33 E-value=1.7e-12 Score=132.15 Aligned_cols=103 Identities=26% Similarity=0.312 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA-----------------SYRSNKTAALIALGRLLEAVFECREAI 325 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~eA~~~~~~al 325 (608)
.+..++.+|..++..|+|++|+.+|++++.+.|++. .+|+++|.+|..+|++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999876 489999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 326 RIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 326 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
+++|++..+|+.+|.+|..+|++++|+..|++++. ++|++
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-l~p~~ 297 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-YAPDD 297 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCC
Confidence 99999999999999999999999999999999999 88876
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.33 E-value=8.6e-12 Score=128.38 Aligned_cols=107 Identities=26% Similarity=0.507 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 501 ARSNGNALFKQAKFSEAAAAYGDGLG----------------LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 501 ~~~lg~~~~~~g~~~eA~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
+..+|..++..|++++|+..|+++++ .+|.+..+|.++|.+|..+|++++|+.+|+++++++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 45899999999999999999999998 77788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHhh
Q 040048 565 YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQALQ 607 (608)
Q Consensus 565 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~L~ 607 (608)
++.+++.+|.+|..+|++++|+.+|+++++++|++..++..|.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999887664
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.33 E-value=1.6e-12 Score=114.36 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=83.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 275 YKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRL----------LEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 275 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
-+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+.+|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHhCCCCCchh
Q 040048 345 LG-----------EVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 345 ~g-----------~~~~A~~~~~~al~~~~p~~ 366 (608)
+| ++++|+.+|+++++ ++|++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD-EQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-HCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH-hCCCC
Confidence 85 78888888888888 88877
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.29 E-value=1.3e-11 Score=109.73 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA------SYRSNKTAALIALGRLLEAVFECREAIRIEPHY------ 331 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------ 331 (608)
+.++..+|.+++..|++++|+.+|++++.+.+... .++..+|.++...|++++|+.++++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 56789999999999999999999999998865432 478999999999999999999999999875443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHH
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIA 401 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 401 (608)
..++..+|.++...|++++|+..+++++. +.+...........+..++.++...|++++|+..++++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA-IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56889999999999999999999999876 3222212223344455555555555555555555555544
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.3e-11 Score=129.75 Aligned_cols=211 Identities=9% Similarity=0.049 Sum_probs=165.9
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCCh----------------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCC
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSA----------------PQIYALQAEALLKLHKHQEADETLKNGPNFD 438 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 438 (608)
..+..+..+...|+|++|++.|.++++..+... ..++..+|.+|...|++++|++.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345667778888999999999999999876532 2457889999999999999999999998765
Q ss_pred CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 040048 439 VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAA 518 (608)
Q Consensus 439 p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~ 518 (608)
+....... ...+...++.++...|++++|+.++++++...+...... ..+..+..+|.++...|+|++|+
T Consensus 86 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 86 MQFAKSKT----VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF------LKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HTSCHHHH----HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS------SHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccchHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHHHccChHHHH
Confidence 44211111 135566788888899999999999999987643321100 01223458999999999999999
Q ss_pred HHHHHhhcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHcCCHHHH
Q 040048 519 AAYGDGLGL------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP---GY----SKARLRRADCFAKIEKWEAS 585 (608)
Q Consensus 519 ~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~a~~~la~~~~~~g~~~~A 585 (608)
.++.+++.. .+....++..+|.+|...|++++|..+|++++.+.+ +. ...+..+|.++...|++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999998864 233467999999999999999999999999998642 22 35678889999999999999
Q ss_pred HHHHHHHHHh
Q 040048 586 MQDYEILKKE 595 (608)
Q Consensus 586 ~~~~~~al~l 595 (608)
..+|.++++.
T Consensus 236 ~~~~~~a~~~ 245 (434)
T 4b4t_Q 236 FSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.27 E-value=4e-12 Score=107.64 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=85.2
Q ss_pred HcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 040048 464 ACGRFEDALAAIQKAAKQD---SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAA 540 (608)
Q Consensus 464 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 540 (608)
..|++++|+..|++++++. |++..++ ..+|.++...|++++|+.+|+++++.+|+++.+++.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECY------------LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4689999999999999994 5555554 499999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 541 CRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
++..+|++++|+..|++++...|+++........+
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999998765443333
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=7.2e-12 Score=104.34 Aligned_cols=96 Identities=28% Similarity=0.382 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 040048 263 DPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY------HRAHH 336 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~ 336 (608)
+++.++.+|.+++..|++++|+.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 040048 337 RLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 337 ~la~~~~~~g~~~~A~~~~~~a 358 (608)
.+|.++..+|++++|+..+++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999988887776654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=9.2e-12 Score=103.68 Aligned_cols=95 Identities=26% Similarity=0.384 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGY------SKARLR 571 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~ 571 (608)
+..+..+|.++...|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 040048 572 RADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 572 la~~~~~~g~~~~A~~~~~~a 592 (608)
+|.++..+|++++|+..|++.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHhHhhhHhHHHHh
Confidence 999999999988887766543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=2.9e-10 Score=95.59 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 515 SEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 515 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC
Q 040048 595 EAPDD 599 (608)
Q Consensus 595 l~P~~ 599 (608)
++|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 98843
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=3.3e-10 Score=90.37 Aligned_cols=85 Identities=29% Similarity=0.440 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.++..++.+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 040048 342 YLRLG 346 (608)
Q Consensus 342 ~~~~g 346 (608)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 98765
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.09 E-value=1e-09 Score=87.45 Aligned_cols=81 Identities=31% Similarity=0.404 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI 579 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 579 (608)
.+..+|.++...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred C
Q 040048 580 E 580 (608)
Q Consensus 580 g 580 (608)
|
T Consensus 91 g 91 (91)
T 1na3_A 91 G 91 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=2.8e-08 Score=106.07 Aligned_cols=338 Identities=9% Similarity=-0.035 Sum_probs=200.8
Q ss_pred cccccccCCCCCCCCCCcchhHHHHhhhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---CCCChhHHHHHHH
Q 040048 232 PQNHYNYNPPKPASSSSAEPTSLCRALST-RMDPETLKIMGNEDYKAGN-FAEALALYDAAISI---DPNKASYRSNKTA 306 (608)
Q Consensus 232 a~~~y~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~lg~~~~~~g~-~~~Al~~~~~al~~---~p~~~~~~~~la~ 306 (608)
+...|..++...|.+..+.+..++...+. -++.+.|..........++ .+.....|+.++.. +|.+..+|.....
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 33444444444444444555555555544 3477888877777766663 35567788888864 6777788877776
Q ss_pred HHH----HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHH-------------HcCCHHHHHHHHHHhCCCCCchhHH
Q 040048 307 ALI----ALGRLLEAVFECREAIRIEPHYHR-AHHRLANLYL-------------RLGEVEKAIYHFKHAGPEADQVDIA 368 (608)
Q Consensus 307 ~~~----~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~-------------~~g~~~~A~~~~~~al~~~~p~~~~ 368 (608)
.+. ..|+.+.+...|++++..-+.... .|......-. ....+..|...|+.+.. ..+..
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~-~~~~~-- 170 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQP-LIRGW-- 170 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTC--
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHH-HHhhc--
Confidence 654 346778888889998885333322 2221111111 11122223333332221 00000
Q ss_pred HHHHHHHHHHHhHHHHH-------hhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcc
Q 040048 369 KAKSLQAHLNKCTDAKR-------TRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDE 441 (608)
Q Consensus 369 ~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 441 (608)
....|......-.. .+........|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+
T Consensus 171 ---s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 171 ---SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp ---SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred ---cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 00011111111110 011333445555555555544 455555555555556666666666655555 543
Q ss_pred cccccC------------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 040048 442 TTRFFG------------------------------PIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMV 491 (608)
Q Consensus 442 ~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 491 (608)
..-++. ......+|...+....+.++.+.|...|+++ ...+.....+.
T Consensus 246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i- 323 (493)
T 2uy1_A 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI- 323 (493)
T ss_dssp SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH-
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH-
Confidence 211100 0001356777777777788899999999999 43222333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 040048 492 MRKAKGVAAARSNGNALFKQA-KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARL 570 (608)
Q Consensus 492 l~~~~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 570 (608)
..|.+....+ +.+.|..+|+.+++..|+.+..|...+......|+.+.|...|+++ +.....|.
T Consensus 324 -----------~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~ 388 (493)
T 2uy1_A 324 -----------YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWD 388 (493)
T ss_dssp -----------HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHH
T ss_pred -----------HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHH
Confidence 4455555555 6999999999999999999998888888889999999999999998 34677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 571 RRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 571 ~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
.....-...|+.+.+...+++++.
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888999999999999986
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.05 E-value=1.2e-09 Score=91.68 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHH
Q 040048 470 DALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFE 549 (608)
Q Consensus 470 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 549 (608)
+|+..|+++++.+|++..++. .+|.++...|++++|+.+|++++..+|.+..+|+.+|.++...|+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRF------------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 578999999999999988876 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcC
Q 040048 550 KAIEDCNAALNVRPG--YSKARLRRADCFAKIE 580 (608)
Q Consensus 550 ~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g 580 (608)
+|+..|++++++.|. +..+...+...+..++
T Consensus 71 ~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999998874 4455555555554444
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.04 E-value=2.9e-10 Score=92.57 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSV-LLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIE 580 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 580 (608)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+.+|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 37899999999999999999999999999999 99999999999999999999999999999999988754 6
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 040048 581 KWEASMQDYEILKKEAPDDE 600 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~~~ 600 (608)
.+.+++..|++++..+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 78889999999998888764
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=5.1e-10 Score=91.66 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 527 LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 527 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 368888899999999999999999999999999999999899999999999999999999999999988764
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=2e-09 Score=114.10 Aligned_cols=139 Identities=10% Similarity=0.077 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--
Q 040048 455 LVVRAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-- 527 (608)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-- 527 (608)
....+..+..+|+|++|+.++++++++ .++++.... ++.++|.+|..+|+|++|+.++++++++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR---------LLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344555677899999999999999984 466666543 4579999999999999999999999975
Q ss_pred ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 528 ---DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYS---KARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 528 ---~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
.|++ +..+++||.+|..+|++++|+.+|++|+++ .|+++ +....++.++..++.+++|...|.++.
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 568899999999999999999999999985 56665 456789999999999999999999998
Q ss_pred HhCCCCHHH
Q 040048 594 KEAPDDEEV 602 (608)
Q Consensus 594 ~l~P~~~~~ 602 (608)
+..-++..+
T Consensus 463 ~~~~~~~~~ 471 (490)
T 3n71_A 463 EAALNNQPM 471 (490)
T ss_dssp HHHHTC---
T ss_pred HHHhcCCCC
Confidence 755444433
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=2.9e-09 Score=87.09 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040048 260 TRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPH--YHRAHHR 337 (608)
Q Consensus 260 ~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~ 337 (608)
.|.++.+++.+|.+++..|++++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999988654 3444444
Q ss_pred HHHHHHHc
Q 040048 338 LANLYLRL 345 (608)
Q Consensus 338 la~~~~~~ 345 (608)
+..++...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55444433
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.97 E-value=9.4e-10 Score=89.51 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNKAS-YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.+.+|..++..|++++|+.+|+++++.+|+++. +++.+|.+|..+|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred CCHHHHHHHHHHhCCCCCch
Q 040048 346 GEVEKAIYHFKHAGPEADQV 365 (608)
Q Consensus 346 g~~~~A~~~~~~al~~~~p~ 365 (608)
+.+.+++..|++++. .+|+
T Consensus 75 ~~~~~a~~~~~~~~~-~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY-NQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTH-HHHC
T ss_pred HHHHHHHHHHHHHhc-cCcc
Confidence 567788888887765 4443
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.88 E-value=4.3e-08 Score=85.32 Aligned_cols=119 Identities=10% Similarity=-0.060 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK- 544 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~- 544 (608)
+++++|+.+|+++.+..... + . +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a-------------~-lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--G-------------C-LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--H-------------H-HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCHh--h-------------h-HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 47899999999999876332 2 1 688899999999999999999987 689999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHh
Q 040048 545 ---LGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK----IEKWEASMQDYEILKKEAPDDEEVDQAL 606 (608)
Q Consensus 545 ---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~~~~~L 606 (608)
.+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .++++...|
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL 135 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 89999999999999987 689999999999999 99999999999999998 455555554
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.84 E-value=7.5e-08 Score=96.34 Aligned_cols=137 Identities=10% Similarity=-0.007 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH---cC----CHHHHH-HH
Q 040048 452 ANLLVVRAQVNLACGR---FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFK---QA----KFSEAA-AA 520 (608)
Q Consensus 452 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~---~g----~~~eA~-~~ 520 (608)
+.-++..|..++..+. +.+|+.+|+++++++|+...++.. ++.++.. .+ ...+++ ..
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~------------la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE------------KALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHhccCCCchhhHHHHHHH
Confidence 4445556666666544 589999999999999999988863 3333321 11 011111 12
Q ss_pred HH--HhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 521 YG--DGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 521 ~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
++ .++..+|.++.++..++..+...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|.
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22 244667999999999999999999999999999999999975 778899999999999999999999999999998
Q ss_pred CHH
Q 040048 599 DEE 601 (608)
Q Consensus 599 ~~~ 601 (608)
.+.
T Consensus 343 ~~t 345 (372)
T 3ly7_A 343 ANT 345 (372)
T ss_dssp HHH
T ss_pred cCh
Confidence 864
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.82 E-value=7.9e-09 Score=109.52 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISI-----DPNK---ASYRSNKTAALIALGRLLEAVFECREAIRI-----EPHY--- 331 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~--- 331 (608)
...+..+..+|+|++|+.+|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34555677899999999999999985 3444 456899999999999999999999999975 4555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 332 HRAHHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 332 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
...+.+||.+|..+|++++|+..|++++.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999998865
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=7.3e-08 Score=83.85 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=97.5
Q ss_pred ChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 040048 423 KHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAAR 502 (608)
Q Consensus 423 ~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 502 (608)
++++|+.+|+++.+... +.+. +|.+|...+.+++|+.+|+++.+. .++.+..
T Consensus 10 d~~~A~~~~~~aa~~g~------------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~------------ 61 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE------------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCR------------ 61 (138)
T ss_dssp HHHHHHHHHHHHHHTTC------------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHH------------
T ss_pred CHHHHHHHHHHHHcCCC------------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHH------------
Confidence 45666666666655432 3344 999999999999999999999886 5556554
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 040048 503 SNGNALFK----QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSK----LGQFEKAIEDCNAALNVRPGYSKARLRRAD 574 (608)
Q Consensus 503 ~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 574 (608)
.+|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .++.+...|+.
T Consensus 62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 62 FLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 89999999 89999999999999987 679999999999999 99999999999999987 45666665543
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.64 E-value=4.8e-07 Score=86.82 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHc-----CC
Q 040048 452 ANLLVVRAQVNLA-----CG------RFEDALAAIQKAAKQDSNN--KEVNMVMRKAKGVAAARSNGNALFKQ-----AK 513 (608)
Q Consensus 452 ~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~lg~~~~~~-----g~ 513 (608)
+++++..|.+... .| ....|...++++++++|+. ..++. .+|.+|... |+
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~------------~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWN------------VLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHH------------HHHHHHHHSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHH------------HHHHHHHhCCCccCCC
Confidence 6666666665532 23 2578999999999999994 44554 889999995 99
Q ss_pred HHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 040048 514 FSEAAAAYGDGLGLDPYN-SVLLCNRAACRSK-LGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 514 ~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 564 (608)
.++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|.
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999975 9999999999988 59999999999999998776
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.64 E-value=1.6e-07 Score=75.28 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 528 DPYNSVLLCNRAACRSKLGQ---FEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 528 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.++++.|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 58899999999999987766 7999999999999999999999999999999999999999999999999984
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=1.6e-07 Score=81.43 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 040048 513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG---QFEKAIEDCNAALNVR-P-GYSKARLRRADCFAKIEKWEASMQ 587 (608)
Q Consensus 513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~ 587 (608)
....+.+.|.+.+..++.+..+.+++|+++.+.+ ++++++..++.+++.+ | +..+++|.+|..|+++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456778888888888899999999999999988 6779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHH
Q 040048 588 DYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 588 ~~~~al~l~P~~~~~~~~ 605 (608)
+++++++++|+|.++...
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999999988765
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.59 E-value=1.5e-07 Score=94.22 Aligned_cols=136 Identities=11% Similarity=-0.053 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCH-------HHHHH-HHH--HHHhhCC
Q 040048 263 DPETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALGRL-------LEAVF-ECR--EAIRIEP 329 (608)
Q Consensus 263 ~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------~eA~~-~~~--~al~~~p 329 (608)
++-.++..|..++..++ +.+|+.+|++|++++|+++.++..++.+|.....+ .+++. .++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 45557778888877654 57899999999999999999999888888632111 11111 111 2335678
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCC
Q 040048 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADS 406 (608)
Q Consensus 330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 406 (608)
..+.++..++..+...|++++|+..+++++. ++|+ ...+..+|.++...|++++|++.|.+++.++|..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln~s-------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMS-------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8899999999999889999999999999998 7754 3456777888888888888888888888888865
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=2.7e-07 Score=73.91 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040048 261 RMDPETLKIMGNEDYKAGN---FAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHY 331 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 331 (608)
|.+++.+..+|.+++..++ .++|..+|++++.++|+++.+++.+|..++..|+|++|+.+++++++.+|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5667777777777765554 5777777777777777777777777777777777777777777777776663
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.57 E-value=3.9e-07 Score=87.46 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q 040048 513 KFSEAAAAYGDGLGLDPY--NSVLLCNRAACRSKL-----GQFEKAIEDCNAALNVRPGY-SKARLRRADCFAK-IEKWE 583 (608)
Q Consensus 513 ~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~-~g~~~ 583 (608)
...+|...++++++++|+ +..+|..+|.+|... |+.++|.++|++|++++|+. ..+++.+|..+.. +|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 357899999999999999 677999999999995 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHHHHhCCC
Q 040048 584 ASMQDYEILKKEAPD 598 (608)
Q Consensus 584 ~A~~~~~~al~l~P~ 598 (608)
+|..++++++..+|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998876
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.55 E-value=6.9e-07 Score=73.35 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISID-------PNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 334 (608)
..++..+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++..+|++++|+.+++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 467888999999999999999999999999863 3456789999999999999999999999999999999988
Q ss_pred HHHHH
Q 040048 335 HHRLA 339 (608)
Q Consensus 335 ~~~la 339 (608)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 87776
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=1e-06 Score=72.36 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 040048 499 AAARSNGNALFKQAKFSEAAAAYGDGLGLD-------PYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLR 571 (608)
Q Consensus 499 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 571 (608)
...+.+|..++..|+|..|+.+|++|+... +....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 445678888888888888888888888752 2346778888888888888888888888888888888877777
Q ss_pred HH
Q 040048 572 RA 573 (608)
Q Consensus 572 la 573 (608)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.48 E-value=4.9e-07 Score=94.17 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=83.5
Q ss_pred HHHHHcCCHHHHHHHHHHhhcC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHH
Q 040048 506 NALFKQAKFSEAAAAYGDGLGL-----DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGY---SKAR 569 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~ 569 (608)
......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|++ ...+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3334578999999999999974 4555 467889999999999999999999999985 4555 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 040048 570 LRRADCFAKIEKWEASMQDYEILKKE-----APDDEEVDQ 604 (608)
Q Consensus 570 ~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~ 604 (608)
.+||.+|..+|++++|+.+|++|+++ .|+++.+..
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999999985 688877654
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2.2e-06 Score=74.37 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-C-CCHHHHHHHHHHH
Q 040048 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQA---KFSEAAAAYGDGLGLD-P-YNSVLLCNRAACR 542 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~-p-~~~~~~~~la~~~ 542 (608)
...+...|.+.+..++.+.++.+ .+|.++.+.+ +.++++.+++.+++.+ | ...++++++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F------------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 45677788888888887777775 8999999988 6779999999999998 6 5689999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 040048 543 SKLGQFEKAIEDCNAALNVRPGYSKARLRRADCF 576 (608)
Q Consensus 543 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 576 (608)
+++|+|++|+++++++++++|++..+...+-.+-
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988776554443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=1.4e-06 Score=90.90 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---H
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGL-----DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGY---S 566 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~ 566 (608)
....-+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3344566789999999999999975 3444 467889999999999999999999999985 3555 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 040048 567 KARLRRADCFAKIEKWEASMQDYEILKKE-----APDDEEVDQA 605 (608)
Q Consensus 567 ~a~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~ 605 (608)
..+++||.+|..+|++++|+.+|++|+++ -|+++.+...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 57899999999999999999999999974 7888877654
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.40 E-value=2.4e-06 Score=88.91 Aligned_cols=98 Identities=6% Similarity=-0.060 Sum_probs=82.4
Q ss_pred HHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----CCCC-
Q 040048 463 LACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-----DPYN- 531 (608)
Q Consensus 463 ~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~- 531 (608)
...|+|++|+..+++++++ .|+++.... ++.++|.+|..+|+|++|+.++++++++ .|++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~---------~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLH---------MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHH---------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3468999999999999984 567776643 4579999999999999999999999975 3444
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH
Q 040048 532 --SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKAR 569 (608)
Q Consensus 532 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~ 569 (608)
+..+++||.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 568899999999999999999999999985 57776543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.37 E-value=1.7e-06 Score=90.29 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=89.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQ-----DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL----- 527 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----- 527 (608)
...-+...|++++|+..+++++++ .++++.... ++.++|.+|..+|+|++|+.++++++.+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~---------~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLK---------VLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 344456789999999999999974 466665543 4579999999999999999999999975
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHH---HHHHHHHHHH
Q 040048 528 DPYN---SVLLCNRAACRSKLGQFEKAIEDCNAALNV-----RPGYSKA---RLRRADCFAK 578 (608)
Q Consensus 528 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a---~~~la~~~~~ 578 (608)
.|++ +..+++||.+|..+|++++|+.+|++|+++ .|+++.. +.+|+.+...
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444 568899999999999999999999999985 5777644 4556665544
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.09 E-value=0.00018 Score=76.56 Aligned_cols=162 Identities=7% Similarity=-0.072 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCCC--CCcccccccCCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPNF--DVDETTRFFGPIGNANLLVVRAQVNLACG---------RFEDALAAIQKA 478 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a 478 (608)
++..+-..+.+.|++++|+.+|+++.+. .|+ ...|..+-.++...+ ..++|...|++.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-----------~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-----------QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-----------HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 3444556677788888888887766542 232 556665555555433 378899999988
Q ss_pred HHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 479 AKQD--SNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD-PYNSVLLCNRAACRSKLGQFEKAIEDC 555 (608)
Q Consensus 479 l~~~--p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 555 (608)
.... |+ ...+ ..+...|.+.|++++|..+|++..... ..+...|..+-..|.+.|+.++|.+.|
T Consensus 97 ~~~G~~Pd-~~ty------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 97 IVDKVVPN-EATF------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHTTCCCC-HHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCC-HHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 7643 33 2222 367789999999999999999988752 336888999999999999999999999
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 556 NAALNVR-PGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 556 ~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
++..+.. .-+...|..+-.+|.+.|+.++|.++|++..+.
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 9998753 225678999999999999999999999998774
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.05 E-value=0.00017 Score=76.71 Aligned_cols=166 Identities=16% Similarity=0.019 Sum_probs=131.9
Q ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhC-C
Q 040048 263 DPET-LKIMGNEDYKAGNFAEALALYDAAISI--DPNKASYRSNKTAALIALG---------RLLEAVFECREAIRIE-P 329 (608)
Q Consensus 263 ~~~~-~~~lg~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g---------~~~eA~~~~~~al~~~-p 329 (608)
.|+. +..+-..+.+.|++++|+.+|+++.+. .|+ ...|..+-.++...+ ..++|...|+++.... .
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 3554 455567788999999999999998875 343 455666655665443 3788999999987743 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCC-CCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChH
Q 040048 330 HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPE-ADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAP 408 (608)
Q Consensus 330 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 408 (608)
-+...|..+...|.+.|++++|+..|++.... +.|+ ...|..+...+.+.|++++|...++++.+.+-....
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 25778999999999999999999999987541 4454 355667777888999999999999999998777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
..|..+...+.+.|++++|..+|++.-+
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999988753
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.95 E-value=4.1e-05 Score=63.82 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 040048 511 QAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEK---AIEDCNAALNVR-P-GYSKARLRRADCFAKIEKWEAS 585 (608)
Q Consensus 511 ~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A 585 (608)
......+...|.+.+..++....+.+++|+++.+..+... ++..++..+... | ..-+.++.||..++++|+|++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445566777777777777889999999999999887766 999999988876 4 4568899999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHH
Q 040048 586 MQDYEILKKEAPDDEEVDQA 605 (608)
Q Consensus 586 ~~~~~~al~l~P~~~~~~~~ 605 (608)
+.+++.++++.|+|.++...
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999987653
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.80 E-value=0.0003 Score=58.61 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-C-CCHHHHHHHHH
Q 040048 466 GRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSE---AAAAYGDGLGLD-P-YNSVLLCNRAA 540 (608)
Q Consensus 466 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~ 540 (608)
.....+...|.+.+..++......+ .+|+++.+..+..+ ++.+++..+..+ | ..-+.++.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F------------~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQF------------EYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHH------------HHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3455667778878777777777665 88999999887776 999999999986 4 45689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 040048 541 CRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADC 575 (608)
Q Consensus 541 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 575 (608)
.++++|+|++|+.+++.+|++.|++..+......+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999998877655444
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.78 E-value=0.00025 Score=60.34 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=91.5
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCC--------HHHHHHHHHHHHHc
Q 040048 480 KQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKF------SEAAAAYGDGLGLDPYN--------SVLLCNRAACRSKL 545 (608)
Q Consensus 480 ~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~la~~~~~~ 545 (608)
-+.|.+++.|. .......+.|+. ++-++.|++|+..-|.. ..+|...|.. ...
T Consensus 7 ~~~p~~yd~W~------------~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPEDWL------------SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHHHHH------------HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHHHHH------------HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 35788888876 455666666888 88889999999875532 4566666655 567
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 546 GQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 546 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
++.++|.+.|+.++.+...++.+|...|..-.++|+...|.+.+.+++.+.|...+...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 99999999999999998889999999999999999999999999999999999887654
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.50 E-value=0.00031 Score=61.21 Aligned_cols=135 Identities=12% Similarity=0.062 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHH
Q 040048 300 YRSNKTAALIALGRLLEAVFECREAIRIE---PHY------HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKA 370 (608)
Q Consensus 300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 370 (608)
+++.-...++..|.|+.|+.....++.+. |+- ..++..+|.+++..++|..|...|++++. ....-...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-~~k~l~k~- 99 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-QKKALSKT- 99 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHhcC-
Confidence 34444555666666666666666655442 221 23667777777777777777777777654 10000000
Q ss_pred HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCC
Q 040048 371 KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIG 450 (608)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~ 450 (608)
..... ..+. . ....... +-....++.+.++.||.+++++++|+..++.+......
T Consensus 100 ~s~~~--~~~~----~-------ss~p~s~--~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt---------- 154 (167)
T 3ffl_A 100 SKVRP--STGN----S-------ASTPQSQ--CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT---------- 154 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC----------
T ss_pred CCccc--cccc----c-------CCCcccc--cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC----------
Confidence 00000 0000 0 0000000 11123578899999999999999999999998765443
Q ss_pred cHHHHHHHHHHH
Q 040048 451 NANLLVVRAQVN 462 (608)
Q Consensus 451 ~~~~~~~la~~~ 462 (608)
+.+...+|.+|
T Consensus 155 -~kvnm~LakLy 165 (167)
T 3ffl_A 155 -PKINMLLANLY 165 (167)
T ss_dssp -HHHHHHHHHHC
T ss_pred -HHHHHHHHHHh
Confidence 77788888775
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.46 E-value=0.0014 Score=55.75 Aligned_cols=107 Identities=18% Similarity=0.069 Sum_probs=91.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040048 258 LSTRMDPETLKIMGNEDYKAGNF------AEALALYDAAISIDPNK--------ASYRSNKTAALIALGRLLEAVFECRE 323 (608)
Q Consensus 258 ~~~~~~~~~~~~lg~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~~~~ 323 (608)
+..|.+++.|..........|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 45689999999999999989999 89999999999876653 2346666644 567999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 324 AIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 324 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
++.+....+.+|...|..-.++|+...|.+.+.+++. ..|..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~ 127 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVP 127 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBC
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCc
Confidence 9999888899999999999999999999999999998 77765
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.41 E-value=0.0011 Score=57.85 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA---------SYRSNKTAALIALGRLLEAVFECREAIRIE---P 329 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p 329 (608)
..-.+++.....++..|.|+.|+-....++.+..++. .++..+|.+++..|+|..|...|+++|... +
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888899999999999999999877643333 378999999999999999999999987641 1
Q ss_pred C----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 330 H----------------------YHRAHHRLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 330 ~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 358 (608)
. +.++.+.++.||..++++++|+..++.+
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1268899999999999999999998864
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.15 E-value=0.0052 Score=51.99 Aligned_cols=76 Identities=8% Similarity=-0.050 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 529 PYNSVLLCNRAACRSKLGQF---EKAIEDCNAALNVRPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 529 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
.....+.+++|+++.+..+. .+++..++..+...|. .-+.++.||..++++|+|++|..+.+.++++.|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688999999999987754 5789999999988885 4678899999999999999999999999999999988764
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.14 E-value=0.0036 Score=52.24 Aligned_cols=75 Identities=8% Similarity=-0.051 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040048 530 YNSVLLCNRAACRSKLGQF---EKAIEDCNAALNVRPG-YSKARLRRADCFAKIEKWEASMQDYEILKKEAPDDEEVDQ 604 (608)
Q Consensus 530 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 604 (608)
-.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|++|..+.+.++++.|+|.++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3577888888888887654 4688888888887774 4677888888888888888888888888888888887754
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.00 E-value=0.0065 Score=50.72 Aligned_cols=80 Identities=8% Similarity=-0.092 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHR 337 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 337 (608)
..+++-+.+|.++.+..+. .+++.+++..+..+|. .-+.++.+|..++++|+|++|..+.+.++++.|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5788889999888877654 4688899888888874 46788899999999999999999999999999998776554
Q ss_pred HHHH
Q 040048 338 LANL 341 (608)
Q Consensus 338 la~~ 341 (608)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.96 E-value=0.011 Score=49.94 Aligned_cols=80 Identities=8% Similarity=-0.100 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040048 261 RMDPETLKIMGNEDYKAGNF---AEALALYDAAISIDPN-KASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHH 336 (608)
Q Consensus 261 ~~~~~~~~~lg~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 336 (608)
...+++-+.+|.++.+..+- .+++.+++..+...|. .-+.++.+|..++++|+|.+|..+++.+|++.|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 46788889999888877654 4688899998888874 4568888999999999999999999999999998877655
Q ss_pred HHHH
Q 040048 337 RLAN 340 (608)
Q Consensus 337 ~la~ 340 (608)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0074 Score=66.40 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=87.7
Q ss_pred HcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--------CCCCC---
Q 040048 464 ACGR-FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG--------LDPYN--- 531 (608)
Q Consensus 464 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--------~~p~~--- 531 (608)
..++ ++.|+..+++....+|......... .++.......+--+|+..+.++++ ..+.+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~----------~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTA----------MITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHH----------HHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHH----------HHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3555 6889999999999988765433211 112221222345567777777663 22222
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 532 -------SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEIL 592 (608)
Q Consensus 532 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 592 (608)
..++...+..+...|+|+-|+++.++|+...|+....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456667888899999999999999999999999999999999999999999999776654
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.70 E-value=0.063 Score=46.39 Aligned_cols=182 Identities=12% Similarity=0.038 Sum_probs=114.0
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--h---
Q 040048 253 SLCRALSTRMDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR--I--- 327 (608)
Q Consensus 253 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~--- 327 (608)
.+..+.+.+..++.-..++..++-.|+|..++-.+.. -+...+.+..+.||..+.+|..|+.+++..++ +
T Consensus 22 ~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d 96 (242)
T 3kae_A 22 IFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERD 96 (242)
T ss_dssp HHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCC
T ss_pred HHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 3445556677778888899999999999999877643 34577888899999999999999999999993 2
Q ss_pred ------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHH-----------HHHHHhHHH
Q 040048 328 ------------EPHYHR-AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQ-----------AHLNKCTDA 383 (608)
Q Consensus 328 ------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~-----------~~~~~~~~~ 383 (608)
+|.+.+ .+..+|.++...|+.++|+.+|..... ..+-.......+. .....+..-
T Consensus 97 ~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~-~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~ 175 (242)
T 3kae_A 97 PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG-KSFLFSPVENLLLENKVPQKRDKENVRQTGRRG 175 (242)
T ss_dssp CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCHHHHHHHHHTTCCCCCC-----------C
T ss_pred cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC-CccccchHHHHHhhcCCCcccchHHHHhhhhcc
Confidence 233333 566789999999999999999987644 3322211100000 000000000
Q ss_pred HHhhcHHHHH--------HHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCc
Q 040048 384 KRTRDWNTLI--------QETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVD 440 (608)
Q Consensus 384 ~~~~~~~~A~--------~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 440 (608)
.....+.... ...++-.+.-|....-.....+..|+.+|..++...+|...-+.+|.
T Consensus 176 i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 176 IEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred chhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 0001111111 12223333345555556667788899999999999998877666654
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.57 E-value=0.075 Score=53.85 Aligned_cols=177 Identities=13% Similarity=-0.019 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChH
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA-CGRFEDALAAIQKAAKQDSNNKE 487 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 487 (608)
.+...+|.+|...|++++-.+++.......+...... .+.+...+-..+.. -+..+.-++.+.++++-..+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak-----~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 94 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK-----AAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH-----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888899998888888877765433321110 12222233333322 24455556666666654433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 488 VNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YN----SVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 488 ~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
.|... ..-..+|..|+..|+|.+|+..+.+...... ++ .+++.....+|..++++.++...+.++...
T Consensus 95 ~flr~------~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 95 TFLRQ------SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 22100 0012789999999999999999988876422 11 456778888999999999999999999765
Q ss_pred C---CCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 040048 562 R---PGY----SKARLRRADCFA-KIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 562 ~---p~~----~~a~~~la~~~~-~~g~~~~A~~~~~~al~l~ 596 (608)
. +.+ +.....-|..+. ..++|.+|..+|-.+++-.
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 3 122 344566788889 8999999999999987543
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.54 E-value=0.5 Score=50.99 Aligned_cols=127 Identities=14% Similarity=-0.014 Sum_probs=64.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNR 538 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 538 (608)
+.......+.+.|...+........-+......+ ...++..+...+...++...+.+......+ ......+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~ 291 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQEL--------RDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERR 291 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHH
Confidence 3334444466666666665544333222222111 112333333344344555555554443332 2223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 539 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+...+..|+++.|...|++.-..........|.+|.++..+|+.++|..+|+++.+
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344557777777766654443334466667777777777777777777776654
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.15 Score=57.20 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 272 NEDYKAGNFAEALA-LYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350 (608)
Q Consensus 272 ~~~~~~g~~~~Al~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 350 (608)
......+++++|.. ++. .-|+ ...+..+...+...|.+++|+...+ ++... ..+....|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 441 1110 1122555666677777777775542 22222 233456777777
Q ss_pred HHHHHHH
Q 040048 351 AIYHFKH 357 (608)
Q Consensus 351 A~~~~~~ 357 (608)
|.+..+.
T Consensus 671 A~~~~~~ 677 (814)
T 3mkq_A 671 ARDLLTD 677 (814)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 7776544
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.49 E-value=0.093 Score=53.17 Aligned_cols=171 Identities=11% Similarity=0.020 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHH----
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASY-----RSNKTAALIA-LGRLLEAVFECREAIRIEPHYHR---- 333 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~---- 333 (608)
-.+.+.+|..|...|++++-..++......-+.-+.+ ...+-..+.. -+..+.-++.+..+++...+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999988765544333322 2222222222 35556666777777653322211
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC----C--C
Q 040048 334 --AHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG----A--D 405 (608)
Q Consensus 334 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~--~ 405 (608)
.-..+|.+|+..|+|.+|...+.+.+.++...+ .....++.+......+...+++.++...+.++.... + .
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 234789999999999999999888765222211 135567888888889999999999999988876432 2 2
Q ss_pred ChHHHHHHHHHHHH-HcCChHHHHHHhhcCC
Q 040048 406 SAPQIYALQAEALL-KLHKHQEADETLKNGP 435 (608)
Q Consensus 406 ~~~~~~~~la~~~~-~~g~~~eA~~~l~~al 435 (608)
....+...-|.++. ..++|.+|...|-+++
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345556688888 8999999998887765
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.96 E-value=0.71 Score=39.96 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=118.9
Q ss_pred HhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH
Q 040048 385 RTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA 464 (608)
Q Consensus 385 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~ 464 (608)
+-.+|+.++-...-.....| +...+++.++.-.|++..++-.+...-. ....+..+.+|..
T Consensus 14 kY~dYdt~~fLsa~L~~~~~----eY~lL~~I~LyyngEY~R~Lf~L~~lNT---------------~Ts~YYk~LCy~k 74 (242)
T 3kae_A 14 RYRDYETAIFLAACLLPCKP----EYRMLMSIVLYLNGEYTRALFHLHKLNT---------------CTSKYYESLCYKK 74 (242)
T ss_dssp HTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHTCCB---------------HHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHccCCh----HHHhhhhhhhhhcchHhHHHHHHHhcch---------------HHHHHHHHHHHHH
Confidence 34566666543333322222 4556778889999999999998876532 7777888999999
Q ss_pred cCCHHHHHHHHHHHHH--h---------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 465 CGRFEDALAAIQKAAK--Q---------------DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 465 ~g~~~~A~~~~~~al~--~---------------~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
.++|..|+..++..+. . +|.+.+... ..+|.++...|+.+||+.+|......
T Consensus 75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy-----------~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE-----------SLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH-----------HHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 9999999999999993 2 234444433 47899999999999999999998877
Q ss_pred CCCCHHHHHHHHH-----------HHHHcCC-------HHHHH--------HHHHHHHhcCCCCHHHH-HHHHHHHHHcC
Q 040048 528 DPYNSVLLCNRAA-----------CRSKLGQ-------FEKAI--------EDCNAALNVRPGYSKAR-LRRADCFAKIE 580 (608)
Q Consensus 528 ~p~~~~~~~~la~-----------~~~~~g~-------~~~A~--------~~~~~al~~~p~~~~a~-~~la~~~~~~g 580 (608)
.|-.+.+-+.+-. +. ..|+ +.... ...++-...-|.....+ ...+..|+.+|
T Consensus 144 ~~lf~~vEnliyeN~vp~~~d~~~i~-~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg 222 (242)
T 3kae_A 144 SFLFSPVENLLLENKVPQKRDKENVR-QTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLG 222 (242)
T ss_dssp CCCHHHHHHHHHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHhhcCCCcccchHHHH-hhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcc
Confidence 6643222111000 00 0000 00111 22223333345433222 35677899999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040048 581 KWEASMQDYEILKKEAPD 598 (608)
Q Consensus 581 ~~~~A~~~~~~al~l~P~ 598 (608)
-.++...+|....+.+|.
T Consensus 223 ~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 223 MNDKSKACFELVRRKDPM 240 (242)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred cchhHHHHHHHHHhcCCC
Confidence 999999999999999996
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.71 Score=40.73 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=14.3
Q ss_pred HHHHHHcCChHHHHHHhhcCCC
Q 040048 415 AEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 415 a~~~~~~g~~~eA~~~l~~al~ 436 (608)
..+++.+|++++++++|.+.-.
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHCCC
Confidence 4556677777777777766543
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.13 Score=57.81 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRL 345 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 345 (608)
.+..+...+...|.+++|+...+ ++... .......|++++|.+..+. .++...|..+|..+...
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHc
Confidence 33445555566666666654331 11111 1222344555555544321 13344555555555555
Q ss_pred CCHHHHHHHHHHh
Q 040048 346 GEVEKAIYHFKHA 358 (608)
Q Consensus 346 g~~~~A~~~~~~a 358 (608)
|+++.|+.+|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5555555555544
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.76 E-value=0.16 Score=51.66 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCC--------C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGLDPY--------N--------------SVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~~p~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
..|......|+.++|...+.+|+.+... . ..+...++..+...|++++|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455678899999999999886321 1 12344677888899999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 561 VRPGYSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 561 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
.+|-+..+|..+-.+|...|+..+|+..|+++.+
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.1 Score=57.50 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=84.7
Q ss_pred cCC-hHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCChHH
Q 040048 421 LHK-HQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLA---CGRFEDALAAIQKAAKQ--------DSNNKEV 488 (608)
Q Consensus 421 ~g~-~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~--------~p~~~~~ 488 (608)
.++ ++.|+..+++....+|. ..+++..+.+... ..+--+|+..+.+.++. .+.+...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~-----------~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPI-----------HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGG-----------GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred cccHHHHHHHHHHHHHhhCCc-----------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344 46788888887776665 3344333333322 12344677777776642 2333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 489 NMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAA 558 (608)
Q Consensus 489 ~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 558 (608)
.... ......+...+..+...|+++-|+.+.++|+...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus 330 ~~~~--~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLM--NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccc--CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111 1112233456788889999999999999999999999999999999999999999999877765
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.52 E-value=0.15 Score=51.99 Aligned_cols=93 Identities=20% Similarity=0.151 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISIDPNK----------------------ASYRSNKTAALIALGRLLEAVFECREA 324 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~eA~~~~~~a 324 (608)
+...|......|+.+.|...+.+|+.+.... ..+...++.++...|++.+|+..+.++
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555566799999999999999874321 022345677788899999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q 040048 325 IRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 325 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 359 (608)
+..+|-+..+|..+..+|...|+..+|+..|+++.
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999998763
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.35 Score=42.72 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
.|++.-+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|+.+|.++-. +-.+..+
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~L 69 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFL 69 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHH
Confidence 4666666665 4679999998887764 5677899999999999999999999987632 2234445
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRA 398 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 398 (608)
|.-.|+.+.-...-+.+.. .. .+......+..+|+++++++.|.+
T Consensus 70 y~~tg~~e~L~kla~iA~~-~g-----------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQT-RE-----------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHH-TT-----------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH-Cc-----------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5556665554443333321 00 111223334555777777666543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.54 Score=48.73 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHhhcCCC----CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Q 040048 409 QIYALQAEALLKLHKHQEADETLKNGPN----FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAK---Q 481 (608)
Q Consensus 409 ~~~~~la~~~~~~g~~~eA~~~l~~al~----~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~ 481 (608)
.+...++.++...|++.+|...+..... ..... ...+.+.....++...+++..|...+.++.. .
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~--------~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS--------EKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 4567789999999999999888876532 11111 1378888999999999999999999998743 3
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CCH---HHHHHHHHHHHHcCCH-HHHHHHH
Q 040048 482 DSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YNS---VLLCNRAACRSKLGQF-EKAIEDC 555 (608)
Q Consensus 482 ~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~---~~~~~la~~~~~~g~~-~~A~~~~ 555 (608)
.+..+.... ..+...|.++...++|.+|..+|..++.... .++ ......+.++.-+..+ ..--...
T Consensus 210 ~~~~~~lk~--------~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll 281 (445)
T 4b4t_P 210 NPKYESLKL--------EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLI 281 (445)
T ss_dssp SSCCHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHH
T ss_pred cCCcHHHHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 344444332 2234788999999999999999999876421 122 1111222222222211 1111111
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 040048 556 NAALNVRPG--YSKARLRRADCFAK--IEKWEASMQDYEILKKEAP 597 (608)
Q Consensus 556 ~~al~~~p~--~~~a~~~la~~~~~--~g~~~~A~~~~~~al~l~P 597 (608)
.+... ++. ...++..+..++.. ..+|+...+.|...+.-+|
T Consensus 282 ~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 282 HKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 11111 111 23456666666655 3567777777766665544
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.48 Score=49.11 Aligned_cols=178 Identities=8% Similarity=0.018 Sum_probs=107.1
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHH---HHHHHHcCChH--HHHHHhhcCCCCCCcccccccCCC
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQ---AEALLKLHKHQ--EADETLKNGPNFDVDETTRFFGPI 449 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~l---a~~~~~~g~~~--eA~~~l~~al~~~p~~~~~~~~~~ 449 (608)
........+...++|+...+.+.-...........+-... ...+......+ .-+...+........ ..+-..
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~---kiflE~ 134 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN---KIFVEV 134 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC---CCCCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc---chHHHH
Confidence 3444556677778888887766554443332222111111 11112223222 222333322222111 111111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---
Q 040048 450 GNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG--- 526 (608)
Q Consensus 450 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--- 526 (608)
..+.+...++.+|...|++.+|...+.....-.-...+ ....++.+.....++...++|..|...++++..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME------MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 23677789999999999999999999988643221111 111244455788999999999999999998742
Q ss_pred CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 527 LDPYN----SVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 527 ~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 12222 346778899999999999999999998764
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.23 E-value=0.25 Score=51.76 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 040048 266 TLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLR 344 (608)
Q Consensus 266 ~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 344 (608)
.+..+|....-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999877788899888887754
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.20 E-value=0.53 Score=53.06 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 040048 500 AARSNGNALFKQAKFSEAAAAYGDGLGL----DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVR-PGYSKARLRRAD 574 (608)
Q Consensus 500 ~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~ 574 (608)
.+..+-..|++.|+.++|..+|.+..+. ..-+...|+.+-..|.+.|++++|++.|++..+.. .-+...|..+-.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3457889999999999999999775432 23468999999999999999999999999998753 225778888888
Q ss_pred HHHHcCC-HHHHHHHHHHHHHhC
Q 040048 575 CFAKIEK-WEASMQDYEILKKEA 596 (608)
Q Consensus 575 ~~~~~g~-~~~A~~~~~~al~l~ 596 (608)
++.+.|+ .++|.++|++..+..
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999998 578999999988753
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.91 E-value=0.65 Score=43.81 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=77.7
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---H-------------
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKA---R------------- 569 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~------------- 569 (608)
..+++.|..++|+......++.+|.++.....+-.+++-.|+++.|.+.++.+.+++|+.... |
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999998875321 1
Q ss_pred -------------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040048 570 -------------------LRRADCFAKIEKWEASMQDYEILKKEAPDD 599 (608)
Q Consensus 570 -------------------~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 599 (608)
..-+......|+.++|...-.++++..|..
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 122444455689999999999998887753
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.88 E-value=0.23 Score=52.06 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAK 578 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 578 (608)
..+|++......+..|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|-+++.....++.+..++..++.+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999998877788888888877765
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.74 E-value=8.8 Score=41.25 Aligned_cols=183 Identities=11% Similarity=0.014 Sum_probs=99.0
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCChHHHHHH---HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHH
Q 040048 383 AKRTRDWNTLIQETRAAIAGGADSAPQIYAL---QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRA 459 (608)
Q Consensus 383 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la 459 (608)
.....+.+.|...+........-+....... ++..+...+...++...+.+......+ ......++
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~e~~~ 292 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-----------TSLIERRV 292 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-----------HHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-----------hHHHHHHH
Confidence 3344566777777766544322222222222 222222333244555555543322221 22222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----------
Q 040048 460 QVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLD----------- 528 (608)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------- 528 (608)
...+..|+++.|..+|..+-.......... +-+|.++...|+.++|..+|+++....
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~------------YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~L 360 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWR------------YWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRI 360 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 344566778877777765433222222222 366777777788777777777765410
Q ss_pred ------------C--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040048 529 ------------P--YN---SVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYE 590 (608)
Q Consensus 529 ------------p--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 590 (608)
+ .. .......+..+...|....|...+..++... +..-...++.+....|.+..++....
T Consensus 361 g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 361 GEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp TCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 00 0123456677888888888888888777542 24555677778888888887775543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.72 E-value=0.5 Score=44.57 Aligned_cols=63 Identities=27% Similarity=0.326 Sum_probs=57.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040048 272 NEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRA 334 (608)
Q Consensus 272 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 334 (608)
..+++.|+.++|++.....++.+|.++.....+...++-.|+++.|...++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 356788999999999999999999999999999999999999999999999999999987543
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.41 Score=49.37 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCC---HHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPN---KASYRSNKTAALIALGRLLEAVFECREAIRIE---PHY---HRA 334 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~---~~~ 334 (608)
..++..+|..++..|++++|+++|.++...... ....+.....++...+++..+..++.++..+. ++. ...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 457888999999999999999999998876433 35678888899999999999999999987642 221 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
....|.++...++|.+|...|-.+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 45567778889999999999887654
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.17 E-value=1.6 Score=49.37 Aligned_cols=101 Identities=8% Similarity=-0.111 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHH
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAIS-----IDPNKASYRSNKTAALIALGRLLEAVFECREAIRI--EPHYHRAHH 336 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~ 336 (608)
...|..+-..|.+.|+.++|..+|.+..+ ..| +...|..+...|.+.|+.++|++.|+++.+. .| +...|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHH
Confidence 34688899999999999999999977543 234 5678999999999999999999999999874 45 567888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHhCC-CCCchh
Q 040048 337 RLANLYLRLGE-VEKAIYHFKHAGP-EADQVD 366 (608)
Q Consensus 337 ~la~~~~~~g~-~~~A~~~~~~al~-~~~p~~ 366 (608)
.+-.++.+.|+ .++|.+.|++... .+.|+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 88889999998 4788888887753 144544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.80 E-value=17 Score=42.41 Aligned_cols=144 Identities=15% Similarity=0.039 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHH
Q 040048 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTD 382 (608)
Q Consensus 303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 382 (608)
.+...+...+.++-|.+ .+..-|.++...+.+|.++...|++++|..+|+++...+.......
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~------------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF------------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-------------
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-------------
Confidence 34445555666655443 3345566777778888888888888888888888754222211000
Q ss_pred HHHhhcHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHH
Q 040048 383 AKRTRDWNTLIQETRAAIAGG--ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQ 460 (608)
Q Consensus 383 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~ 460 (608)
.. ........... ....+..|..+..++...+.++.+++..+.+++..+.+.... ....|..+-.
T Consensus 880 ----~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~-----~~~l~~~iFk 946 (1139)
T 4fhn_B 880 ----AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL-----SIAITHETLK 946 (1139)
T ss_dssp ----SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH-----HHHHHHHHHH
T ss_pred ----hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh-----HHHHHHHHHH
Confidence 00 00000111111 111233444555566666666666666665554332211100 1235555566
Q ss_pred HHHHcCCHHHHHHHHH
Q 040048 461 VNLACGRFEDALAAIQ 476 (608)
Q Consensus 461 ~~~~~g~~~~A~~~~~ 476 (608)
.+...|+|++|...+.
T Consensus 947 ~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 947 TACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHCCSGGGGHHHH
T ss_pred HHHhhCCHHHHHHHHH
Confidence 6666666666665554
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.43 Score=49.23 Aligned_cols=105 Identities=9% Similarity=-0.065 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCC-chhHHHHHH
Q 040048 297 KASYRSNKTAALIALGRLLEAVFECREAIRIEP---HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEAD-QVDIAKAKS 372 (608)
Q Consensus 297 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-p~~~~~~~~ 372 (608)
...++..+|..|...|++++|.+.|.++..... .-.+.+..+..++...+++..+...+.++..... ..+....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~-- 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR-- 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH--
Confidence 455789999999999999999999999887432 2367888899999999999999999998743111 1111111
Q ss_pred HHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048 373 LQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403 (608)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 403 (608)
.......|..+...++|..|...|-.++...
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 1223334555666788888888887776543
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.71 Score=48.04 Aligned_cols=203 Identities=11% Similarity=0.034 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHHcCCHHHHH----------HHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAIS-----------IDPNKASYRSNKTAALIALGRLLEAV----------FECREAI 325 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~eA~----------~~~~~al 325 (608)
+...-..++..+++++|..+-...+. +|+-.+.+|+.++.++...|+..... ..+-.++
T Consensus 139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~ 218 (523)
T 4b4t_S 139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL 218 (523)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH
Confidence 33444456788899999888776651 13445667888888888888766532 1222222
Q ss_pred h-----hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCch-hHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHH
Q 040048 326 R-----IEPHY-HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQV-DIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRA 398 (608)
Q Consensus 326 ~-----~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 398 (608)
+ .++.. ...+..+-..|...+.|+.|.....++. .|. .......+..++..|.++...++|.+|..++..
T Consensus 219 rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 219 KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2 12221 5578888999999999999999999984 232 223344567788899999999999999999999
Q ss_pred HHHcCCCCh------HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCC---HH
Q 040048 399 AIAGGADSA------PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGR---FE 469 (608)
Q Consensus 399 al~~~~~~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~ 469 (608)
++...|... ..++-.+..+-+-+|+..+-...-...++ .....|..++.++ +.|+ +.
T Consensus 296 A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~-------------~~L~pY~~Lv~Av-r~GdL~~F~ 361 (523)
T 4b4t_S 296 AIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQ-------------KSLLPYYHLTKAV-KLGDLKKFT 361 (523)
T ss_dssp HTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCH-------------HHHHHHHHHHHHH-HHTCHHHHH
T ss_pred HHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHH-------------HHHHHHHHHHHHH-HcCCHHHHH
Confidence 998776442 12332333333335765432222111111 0134466666664 4566 45
Q ss_pred HHHHHHHHHHHhCCCCh
Q 040048 470 DALAAIQKAAKQDSNNK 486 (608)
Q Consensus 470 ~A~~~~~~al~~~p~~~ 486 (608)
.+++-++..+..+....
T Consensus 362 ~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 362 STITKYKQLLLKDDTYQ 378 (523)
T ss_dssp HHHHHTHHHHHHTTCTH
T ss_pred HHHHHhcceeccCChhH
Confidence 56666666666665443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.27 E-value=14 Score=35.82 Aligned_cols=80 Identities=6% Similarity=-0.162 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------h---cCCCCHHHHHHHHH-H
Q 040048 516 EAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAAL----------------N---VRPGYSKARLRRAD-C 575 (608)
Q Consensus 516 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------~---~~p~~~~a~~~la~-~ 575 (608)
+|+.+-.+.-...-.++..+..+|..|.+.|++.+|..+|-..- + -.|...+.+..+|. .
T Consensus 118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~ 197 (312)
T 2wpv_A 118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFN 197 (312)
T ss_dssp HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 34444443323233678889999999999999988888773110 1 12233455555554 3
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 040048 576 FAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 576 ~~~~g~~~~A~~~~~~al~l 595 (608)
|..+|+...|...|....+.
T Consensus 198 yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 67889999999998876643
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.63 E-value=1.7 Score=45.16 Aligned_cols=146 Identities=12% Similarity=-0.033 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCChHHHHHHhhcCCC--CCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHH----------HHHHHH
Q 040048 411 YALQAEALLKLHKHQEADETLKNGPN--FDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDAL----------AAIQKA 478 (608)
Q Consensus 411 ~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~a 478 (608)
+.+.-..+...+++++|..+-...+. .-........ ..-.+.+|+..+.++...|+..... ..+-.+
T Consensus 139 ~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtl-D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~ 217 (523)
T 4b4t_S 139 HLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSL-NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF 217 (523)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence 33344455667788888777665541 1110000000 0013677888888887777766532 222223
Q ss_pred HHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC---HHHHHHHHHHHHHcCCHHHH
Q 040048 479 AKQDSN--NKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDP--YN---SVLLCNRAACRSKLGQFEKA 551 (608)
Q Consensus 479 l~~~p~--~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~---~~~~~~la~~~~~~g~~~~A 551 (608)
+....- +... .+..+..+-..|...+.|++|..+..++.-... .+ ...++.+|.++.-.++|.+|
T Consensus 218 ~rta~lr~D~~~--------qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 218 LKIASLKHDNET--------KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp HHHCCSCSSSCH--------HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcccCcch--------hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 322111 1111 122345778899999999999999999852211 11 46778899999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 040048 552 IEDCNAALNVRPGY 565 (608)
Q Consensus 552 ~~~~~~al~~~p~~ 565 (608)
.+++..|+...|.+
T Consensus 290 ~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 290 NEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHTSSCSCS
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999887653
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.63 E-value=2.6 Score=49.27 Aligned_cols=118 Identities=7% Similarity=-0.048 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------
Q 040048 458 RAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL---------- 527 (608)
Q Consensus 458 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------- 527 (608)
+...+...+.++-+.+ .+...+.++... +.+|.++...|++++|..+|+++..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~------------yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~ 881 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAV------------YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV 881 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHH------------HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHH------------HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh
Confidence 4444555666655543 334556665443 37899999999999999999987431
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 040048 528 -------------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP-GYS----KARLRRADCFAKIEKWEASMQDY 589 (608)
Q Consensus 528 -------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~a~~~la~~~~~~g~~~~A~~~~ 589 (608)
....+..|..+..++.+.|.++.+++..+.|++..+ ++. ..|.++-..+..+|+|++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 111245677888999999999999999999998754 333 26778888899999999997776
Q ss_pred HH
Q 040048 590 EI 591 (608)
Q Consensus 590 ~~ 591 (608)
..
T Consensus 962 ~~ 963 (1139)
T 4fhn_B 962 MV 963 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.24 E-value=26 Score=34.18 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040048 404 ADSAPQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDS 483 (608)
Q Consensus 404 ~~~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 483 (608)
+.-.+.++..+|..|.+.+++.+|..+|--. .++. ++.+..+-.-+...+ .|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg--~~~s-----------~~~~a~mL~ew~~~~---------------~~ 183 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLG--TKES-----------PEVLARMEYEWYKQD---------------ES 183 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS--CTTH-----------HHHHHHHHHHHHHTS---------------CG
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHhc--CCch-----------HHHHHHHHHHHHHhc---------------CC
Confidence 4455788888899999888888888887422 1111 222222221111211 12
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----C------------------CCCCHHH-HHHHHH
Q 040048 484 NNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLG----L------------------DPYNSVL-LCNRAA 540 (608)
Q Consensus 484 ~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~------------------~p~~~~~-~~~la~ 540 (608)
...+.+. ......|...++...|...+...++ . .|..+.+ +..+..
T Consensus 184 ~e~dlfi-----------aRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLl 252 (336)
T 3lpz_A 184 HTAPLYC-----------ARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLL 252 (336)
T ss_dssp GGHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHH
T ss_pred ccHHHHH-----------HHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHH
Confidence 2222221 1333556778888888775544332 1 1333332 222333
Q ss_pred HHHHcCC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcC
Q 040048 541 CRSKLGQ---FEKAIEDCNAALNVRP-GYSKARLRRADCFAKIE 580 (608)
Q Consensus 541 ~~~~~g~---~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g 580 (608)
+-.+.+. |..-.+.|...++.+| .....+-.+|.+|+...
T Consensus 253 lt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 253 LSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 3444553 4445566777777787 78888889999998653
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.29 E-value=0.0091 Score=61.07 Aligned_cols=350 Identities=13% Similarity=0.047 Sum_probs=202.9
Q ss_pred ccccccCccCCCCCCCCcccccccccc-CCCcccccccCCCCCCCCCCcchhHHHHhhhC----------CCCHHHHHHH
Q 040048 202 GVRGNNNTNKNNNRYPNSVMGNVVKKQ-NDHPQNHYNYNPPKPASSSSAEPTSLCRALST----------RMDPETLKIM 270 (608)
Q Consensus 202 A~~~~~~~~~~~~~~~~a~lg~i~~~~-~~~a~~~y~~~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~l 270 (608)
|+.+|-++ .+|......+..+-... +++-..+.+++.+...+...+.+..++-+... ..+..-.-..
T Consensus 73 AIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~V 150 (624)
T 3lvg_A 73 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQV 150 (624)
T ss_dssp TTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHH
T ss_pred HHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHH
Confidence 55555442 34544444333332222 67777777777777666555544444433322 2233345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 040048 271 GNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEK 350 (608)
Q Consensus 271 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 350 (608)
|.-++..|.|+.|.-+|.. ..-|..|+.++..+|+|..|++..++| +++..|-....++...+++.-
T Consensus 151 GDrcf~e~lYeAAKilys~--------isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNN--------VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGG--------SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTT
T ss_pred HHHHHHccCHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHH
Confidence 9999999999988877753 233556788999999999999887766 456678888888899998888
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcCChHHHHHH
Q 040048 351 AIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLHKHQEADET 430 (608)
Q Consensus 351 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 430 (608)
|.-+--..+ +.++. +-.+...|...|-+++.+..++..+.+...+ ..++..+|.+|.+- +.++-.+.
T Consensus 218 AqicGLniI--vhade---------L~elv~~YE~~G~f~ELIsLlEaglglErAH-mGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 218 AQMCGLHIV--VHADE---------LEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TTHHHHHHH--CCSSC---------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC-HHHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHhcchhc--ccHHH---------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHhc-CHHHHHHH
Confidence 776655544 22222 1224455677788999999999998765555 45677778777654 56666666
Q ss_pred hhcCCCCC--CcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH-------------HHHHhCCCChHHHH-HHHH
Q 040048 431 LKNGPNFD--VDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQ-------------KAAKQDSNNKEVNM-VMRK 494 (608)
Q Consensus 431 l~~al~~~--p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-------------~al~~~p~~~~~~~-~l~~ 494 (608)
++-....- |+-.. .-.....|..+..+|..-.+|+.|....- +++..-. +.++++ .+..
T Consensus 285 lklf~sriNipKvir----acE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa-N~EiyYKAi~F 359 (624)
T 3lvg_A 285 LELFWSRVNIPKVLR----AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVELYYRAIQF 359 (624)
T ss_dssp HTTSSSSSCCTTTHH----HHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS-CSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHH----HHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc-hHHHHHHHHHH
Confidence 66543311 11100 01236778888889999999998764321 1111111 111111 0000
Q ss_pred H--HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 495 A--KGVAAARSNGNALFKQAKFSEAAAAYGDGLGL-----------DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 495 ~--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
. .....+..+-.++...=+....+..|++.-.+ +.++..+--.+-.+|....+|+. ++..++.
T Consensus 360 YL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~----LR~SId~ 435 (624)
T 3lvg_A 360 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA----LRTSIDA 435 (624)
T ss_dssp HTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH----HHHTTSS
T ss_pred HHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH----HHHHHHH
Confidence 0 00000012222233333444555555554221 33556677778888999998874 3333332
Q ss_pred CCC--------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 040048 562 RPG--------------YSKARLRRADCFAKIEKWEASMQD 588 (608)
Q Consensus 562 ~p~--------------~~~a~~~la~~~~~~g~~~~A~~~ 588 (608)
..+ -.+...--|.+|.+.++|++|+..
T Consensus 436 ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 436 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp CCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHH
Confidence 222 234445557788888888888753
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=81.86 E-value=0.00018 Score=73.39 Aligned_cols=266 Identities=13% Similarity=0.051 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANL 341 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 341 (608)
..|+.|..+|.+.+..+...+||+.|-++ +++..+.....+..+.|.|++=+.++.-+-+. -..+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 44667888888888888888888777543 34445555556666778888877777766543 2333444556666
Q ss_pred HHHcCCHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHc
Q 040048 342 YLRLGEVEKAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKL 421 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~ 421 (608)
|.+.++..+-. ..+. .|+.. -....|.-....|.|+.|.-.|..+ .-|..++.++..+
T Consensus 126 yAk~~rL~elE----efl~--~~N~A-------~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L 183 (624)
T 3lvg_A 126 LAKTNRLAELE----EFIN--GPNNA-------HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 183 (624)
T ss_dssp HHTSCSSSTTT----STTS--CCSSS-------CTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSC
T ss_pred HHhhCcHHHHH----HHHc--CCCcc-------cHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHH
Confidence 77776644322 2221 11110 0111222222333333332222110 0123456666677
Q ss_pred CChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 040048 422 HKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAA 501 (608)
Q Consensus 422 g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 501 (608)
|+|..|.+.-+++-. ..+|-.........+++.-|-.+--.++ ..++..+
T Consensus 184 ~~yq~AVdaArKAns---------------~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL~-------------- 233 (624)
T 3lvg_A 184 GEYQAAVDGARKANS---------------TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELE-------------- 233 (624)
T ss_dssp SGGGSSTTTTTTCCS---------------SCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCCS--------------
T ss_pred HHHHHHHHHHHhcCC---------------hhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHHH--------------
Confidence 777777666666543 5667777777788888877766655544 3344333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------CHHHHHHHH
Q 040048 502 RSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV--RPG------YSKARLRRA 573 (608)
Q Consensus 502 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------~~~a~~~la 573 (608)
.+...|...|.|+|-+.+++.++.+..-+...+..||.+|.+- +.++-++.++--... -|. ....|-.+-
T Consensus 234 -elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 234 -ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp -GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 2336778899999999999999998888899999999988765 344444444332111 122 234577788
Q ss_pred HHHHHcCCHHHHHH
Q 040048 574 DCFAKIEKWEASMQ 587 (608)
Q Consensus 574 ~~~~~~g~~~~A~~ 587 (608)
.+|.+-.+|+.|..
T Consensus 312 fLY~~ydE~DnA~l 325 (624)
T 3lvg_A 312 FLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHhcchhHHHHHH
Confidence 88888888887754
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.36 E-value=88 Score=35.21 Aligned_cols=45 Identities=7% Similarity=-0.102 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 040048 300 YRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLG 346 (608)
Q Consensus 300 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 346 (608)
-|.....|+..+++.+.+.+.|.+.+. .++....+.+|..+.+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 356677889999999999999999874 456666667777666543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.23 E-value=49 Score=32.24 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH---------hcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 040048 529 PYNSVLLCNRAACRSKLGQFEKAIEDCNA-------AL---------NVRPGYSKARLRRADC-FAKIEKWEASMQDYEI 591 (608)
Q Consensus 529 p~~~~~~~~la~~~~~~g~~~~A~~~~~~-------al---------~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~ 591 (608)
-.++.++..+|..|.+.+++.+|..+|-- .+ +..|...+.+..+|.+ |...++...|...|..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35678888888888888888888776621 00 1124445666666655 7889999999987766
Q ss_pred HHH
Q 040048 592 LKK 594 (608)
Q Consensus 592 al~ 594 (608)
..+
T Consensus 213 f~~ 215 (336)
T 3lpz_A 213 FTS 215 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.72 E-value=11 Score=42.32 Aligned_cols=259 Identities=12% Similarity=-0.005 Sum_probs=128.8
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc----hhHHHHHHHHHHHHH
Q 040048 309 IALGRLLEAVFECREAIRIE-PHY----HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ----VDIAKAKSLQAHLNK 379 (608)
Q Consensus 309 ~~~g~~~eA~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p----~~~~~~~~~~~~~~~ 379 (608)
...|+.++++..+.+.+... .++ .-+.+.+|.++...+ .+++..+...+. -+. +.........+.+.+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~-~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIV-ENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHH-HHSSCCSCHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHc-CccccccccccHHHHHHHHHHH
Confidence 34678888888888776522 222 335666777766555 467777766543 111 000112223355566
Q ss_pred hHHHHHhhcHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHH
Q 040048 380 CTDAKRTRDWNTLIQETRAAIAGGADSA-PQIYALQAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVR 458 (608)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 458 (608)
|.++.-.++ ++++..+...+..+.... ..+-..+|.++...|+-+-...++..+.+...+ ...-...+
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e----------~vrR~aal 530 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG----------NITRGLAV 530 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH----------HHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH----------HHHHHHHH
Confidence 666665554 355666666665433211 133445677777777766665555554432211 12223444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNR 538 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 538 (608)
|..+...|+.+.+....+.... .. ++.... .+...+|..|...|+...-..++..+.....++..-.-.+
T Consensus 531 gLGll~~g~~e~~~~li~~L~~-~~-dp~vRy--------gaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAVi 600 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLA-SD-ESLLRY--------GGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVI 600 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHH-CS-CHHHHH--------HHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHhhhCCChHHHHHHHHHHHh-CC-CHHHHH--------HHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 4455566777666655554433 22 222221 1123667778888886444446666654322222222233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CC-HHHHHHHHHHHH
Q 040048 539 AACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKI--EK-WEASMQDYEILK 593 (608)
Q Consensus 539 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g~-~~~A~~~~~~al 593 (608)
|..+...|+.+.+...+....+ -.++.+.+..+.++-.. |+ ..+++..+....
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 3333345554433333332222 23455555444444333 22 256677666664
No 268
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.02 E-value=20 Score=40.78 Aligned_cols=94 Identities=9% Similarity=-0.043 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCC------------------
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIR-IEP------------------ 329 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p------------------ 329 (608)
.+...+...|.++-|. +.+...|.++..-|.+|.+|...|++++|..+|+++-. +..
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3566677788887554 35677888888889999999999999999999998742 111
Q ss_pred --CC--HHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh
Q 040048 330 --HY--HRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD 366 (608)
Q Consensus 330 --~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~ 366 (608)
.. ...|.....++...+-++-++...+.|+....+++
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 11 23566778888899999999999988886455544
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.74 E-value=1.6e+02 Score=33.33 Aligned_cols=97 Identities=14% Similarity=-0.031 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchh------HHHH------
Q 040048 303 NKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVD------IAKA------ 370 (608)
Q Consensus 303 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~------~~~~------ 370 (608)
.+...+...|.++-|. ..+..-|.++..-+.+|.+|...|++++|..+|+++-..+.... ....
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3555666777776543 45567788888889999999999999999999999864232111 0000
Q ss_pred ----HHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC
Q 040048 371 ----KSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG 403 (608)
Q Consensus 371 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 403 (608)
.....|.....++...+.++.++...+.+|..-
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 112355666777778888888888888888654
No 270
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=64.39 E-value=61 Score=31.64 Aligned_cols=29 Identities=3% Similarity=-0.038 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 565 YSKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 565 ~~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
+..-|..+|-.+++.+++.+|+..+-.+-
T Consensus 295 HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 295 HIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=63.01 E-value=34 Score=28.59 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=40.7
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNV 561 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 561 (608)
..+..+|+-++-.+.+...+.-.+-++..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45566777777777777766666666888888888888888888888888877664
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.39 E-value=18 Score=26.48 Aligned_cols=31 Identities=3% Similarity=0.030 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 040048 572 RADCFAKIEKWEASMQDYEILKKEAPDDEEV 602 (608)
Q Consensus 572 la~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 602 (608)
+|..+...|++++|..+|-+|+...|+-.+.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4444444444445554455555444444433
No 273
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=62.22 E-value=65 Score=32.09 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=32.6
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHhh
Q 040048 551 AIEDCNAALNV-----RPGYSKARLRRADCFAKIEKWEASMQDYEILKKE------APDDEEVDQALQ 607 (608)
Q Consensus 551 A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~L~ 607 (608)
++..|.+++.. ...+..-|..+|-.+++.+++.+|+..+-.+-.. .-+|.++++.+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~ 365 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 365 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 45555555543 2334555666666777777777777766665542 345556655543
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=62.07 E-value=69 Score=26.77 Aligned_cols=133 Identities=10% Similarity=-0.014 Sum_probs=86.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------HHHHHHHHHHH--HHcCCHHHHHHHHHHhhcCCCC
Q 040048 459 AQVNLACGRFEDALAAIQKAAKQDSNNKEVNMVMRKAKG------VAAARSNGNAL--FKQAKFSEAAAAYGDGLGLDPY 530 (608)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~~~~~lg~~~--~~~g~~~eA~~~~~~al~~~p~ 530 (608)
|.-....|..++.++...+...-.+-...-|....-+.. ++.+..+|..+ ..-|+...-+.+|-+.-..
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~--- 90 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL--- 90 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC---
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch---
Confidence 444567899999999999998877766655654433222 22222333222 2234555555555543221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040048 531 NSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDYEILKKE 595 (608)
Q Consensus 531 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l 595 (608)
.+....--..+...|+-++-.+.+...+.-.+-.+..++.+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 91 -se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 91 -NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp -CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222222245567888888777777766666667999999999999999999999999998764
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=61.53 E-value=1.2e+02 Score=32.69 Aligned_cols=27 Identities=7% Similarity=-0.155 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHhhcCCC
Q 040048 410 IYALQAEALLKLHKHQEADETLKNGPN 436 (608)
Q Consensus 410 ~~~~la~~~~~~g~~~eA~~~l~~al~ 436 (608)
+....|......|++++|+.+|.-+-+
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La~~ 471 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLAEE 471 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 334556677788888888888776654
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.99 E-value=19 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISIDPNKAS 299 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~ 299 (608)
..+|..+...|++++|+.+|-+|+...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34777777888888888878788877776543
No 277
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.71 E-value=1e+02 Score=33.18 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=74.1
Q ss_pred HHHHHHHHh-cCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCC
Q 040048 284 LALYDAAIS-IDPNKASYRSNKTAALIALGRLLEAVFECREAIRIEPHYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEA 362 (608)
Q Consensus 284 l~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 362 (608)
+.-+++.|. ..|..... ..-.++.-.|+|+.|+.++-+. . ....+|+.++..+ .|-... -...+. .
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~---~-~vdAVH~AIaL~~--~gLL~~----~~~lls-~ 347 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF---S-EMDAVHLAIGLAS--LKLFKI----DSSTRL-T 347 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT---C-HHHHHHHHHHHHH--TTC---------------
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc---C-chhHHHHHHHHHH--cCCccC----CCcccc-c
Confidence 455555553 33332222 4566777789999999988755 1 1122444444443 333332 111221 2
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHcCChHHHH-------------
Q 040048 363 DQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGG-ADSAPQIYALQAEALLKLHKHQEAD------------- 428 (608)
Q Consensus 363 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~la~~~~~~g~~~eA~------------- 428 (608)
++... ... +..++....-..+..+...|+.+|--+-..+ ++.....+..+.++....++++.=+
T Consensus 348 ~~~~~-~lN-~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~ 425 (661)
T 2qx5_A 348 KKPKR-DIR-FANILANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGV 425 (661)
T ss_dssp --------C-HHHHHHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCH
T ss_pred CCCcc-ccc-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcch
Confidence 21110 000 1111111111235567777777665541111 1111223444555555555544322
Q ss_pred -HHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040048 429 -ETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFEDALAAIQKA 478 (608)
Q Consensus 429 -~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 478 (608)
+-+...+.+.- ...+ .-.+....|......|++++|+.+|.-+
T Consensus 426 i~~~~~li~l~d--~~~~-----~~~i~~~aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 426 IEERQPLLHVRD--EKEF-----LHTITEQAARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHTCGGGTCSC--HHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhhccccccc--HHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 22222222210 0000 1234445666777888888888887654
No 278
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=54.79 E-value=1.4e+02 Score=27.85 Aligned_cols=46 Identities=7% Similarity=0.099 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
-+..++.+..+.++|++.+...+++.+.++....+-..++..+|-.
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKN 78 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKN 78 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHh
Confidence 3455667778889999999999999998888777777777776643
No 279
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=53.98 E-value=1.4e+02 Score=27.63 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=39.9
Q ss_pred HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-cCChHHHHHH
Q 040048 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-LHKHQEADET 430 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~ 430 (608)
+..++.+..+.++|++.+...+++.+.++....+-..++..+|-. .|....+...
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRi 62 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRV 62 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHH
Confidence 455677788889999999999999999888777777777777643 2333334333
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.24 E-value=25 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al 559 (608)
+..+..++..+.+.|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566777777777777777776654
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.10 E-value=48 Score=33.95 Aligned_cols=99 Identities=6% Similarity=-0.131 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHH----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------CC--CCH
Q 040048 467 RFEDALAAIQKAAKQDSNNKEVNMV----MRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGL--------DP--YNS 532 (608)
Q Consensus 467 ~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p--~~~ 532 (608)
..+++...+.+++...-.+...... -++....-....+-.+|++.++..-+...++..-.. .| ...
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4567777788887764332211000 011111222346668999999999888888654222 12 124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 040048 533 VLLCNRAACRSKLGQFEKAIEDCNAALNV-RPGY 565 (608)
Q Consensus 533 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 565 (608)
..++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 67889999999999999999999999998 6654
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.98 E-value=23 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGL 525 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al 525 (608)
+-.+...+..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456688999999999999999987764
No 283
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=49.84 E-value=1.6e+02 Score=27.33 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=35.4
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHH
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGG--ADSAPQIYALQAEALLK 420 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~la~~~~~ 420 (608)
-+..++.+..+.++|++.+...+++.+.+ +.....-..++..+|-.
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKN 57 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKN 57 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence 34566777888899999999999999988 77766666666666543
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.55 E-value=47 Score=28.64 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=27.1
Q ss_pred HHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040048 551 AIEDCNAALN--VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEA 596 (608)
Q Consensus 551 A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~ 596 (608)
+.+.|.-+.. +.-..+..|...|..+...|++.+|.+.|+..++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4445554444 334455666666666666666666666666666654
No 285
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=49.55 E-value=1.6e+02 Score=27.00 Aligned_cols=45 Identities=7% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 040048 376 HLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK 420 (608)
Q Consensus 376 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~ 420 (608)
+..++.+..+.++|++.+...+++++.+++...+-..++..+|-.
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKn 52 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKN 52 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 445677778889999999999999998887777777777766643
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=49.11 E-value=35 Score=30.63 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKA 298 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~ 298 (608)
....+.+|..++.+++|.+|.+.|.+|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 44677788888888888888888888888877653
No 287
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.69 E-value=1e+02 Score=26.43 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--h-hH---HHH---HHHHHHHcCCHHHHHHHHHHHHh
Q 040048 265 ETLKIMGNEDYKAGNFAEALALYDAAISIDPNK--A-SY---RSN---KTAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 265 ~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~--~-~~---~~~---la~~~~~~g~~~eA~~~~~~al~ 326 (608)
..-+..|..++..|+|=+|-+.++.+....+.. . .. +.. .|......|+..-|...+.+++.
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344667888889999999999999988876554 1 12 222 23344557888888888888876
No 288
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=46.03 E-value=1.8e+02 Score=26.64 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-cCChHHHHHH
Q 040048 375 AHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLK-LHKHQEADET 430 (608)
Q Consensus 375 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~ 430 (608)
-+..++.+..+.++|++.+...+++.+.++....+-..++..+|-. .|....+...
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRi 66 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRV 66 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHH
Confidence 3455677788889999999999999999888877777777777654 2333344433
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.37 E-value=40 Score=28.61 Aligned_cols=50 Identities=6% Similarity=-0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 549 EKAIEDCNAALNV--RPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 549 ~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
+++.+.|.-.... .-..+..|...|..+...|++++|.+.|+..++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3467777766653 4556777888888888888888888888888876543
No 290
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.88 E-value=1.2e+02 Score=27.00 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 512 AKFSEAAAAYGDGLG--LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 512 g~~~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
+...++..+|.-+.. +....+..|...|..+...|++.+|.+.|+..++..-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 446788888887765 4556788999999999999999999999999998753
No 291
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=44.43 E-value=1e+02 Score=30.82 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 566 SKARLRRADCFAKIEKWEASMQDYEILK 593 (608)
Q Consensus 566 ~~a~~~la~~~~~~g~~~~A~~~~~~al 593 (608)
..-|..+|-.+.+.+++.+|+..+-.+-
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 3444555555555555555555555543
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.04 E-value=1.1e+02 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLGL 527 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~~ 527 (608)
..|..++..|+|=+|-+.++.+...
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~ 61 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYN 61 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHh
Confidence 3444444445555555555554444
No 293
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.92 E-value=26 Score=35.93 Aligned_cols=64 Identities=2% Similarity=-0.176 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAALNVRP--G--------YSKARLRRADCFAKIEKWEASMQDYEILKKE-APDD 599 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~l-~P~~ 599 (608)
..+-.+|+++++...+...++..-...+ . ....+|.+|.++...++|.+|.+++..|++. .|.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4566889999999999888865544322 1 2456789999999999999999999999999 7765
No 294
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=43.77 E-value=29 Score=26.81 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 537 NRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4666666666677777766666666554
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.74 E-value=45 Score=29.91 Aligned_cols=35 Identities=9% Similarity=-0.130 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEPHYH 332 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 332 (608)
...++.+|.++...++|.+|.+.+..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45688999999999999999999999999877653
No 296
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.20 E-value=21 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAISI 293 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~~ 293 (608)
...+|.-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888889999999999888763
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.98 E-value=32 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 040048 268 KIMGNEDYKAGNFAEALALYDAAISIDPNK 297 (608)
Q Consensus 268 ~~lg~~~~~~g~~~~Al~~~~~al~~~p~~ 297 (608)
..+|..+...|+++.|+.+|-+|+...|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 458888888899999998888888877653
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.38 E-value=41 Score=25.23 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAI 291 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al 291 (608)
+...|...-..|+|++|+.+|.+++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444445555555555555444
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.76 E-value=40 Score=24.97 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC
Q 040048 335 HHRLANLYLRLGEVEKAIYHFKHAGP 360 (608)
Q Consensus 335 ~~~la~~~~~~g~~~~A~~~~~~al~ 360 (608)
...+|+-|...|+|+.|+.+|+.++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45677778888888888888887754
No 300
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.10 E-value=2.8e+02 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHcCChHHHHHHhh
Q 040048 405 DSAPQIYALQAEALLKLHKHQEADETLK 432 (608)
Q Consensus 405 ~~~~~~~~~la~~~~~~g~~~eA~~~l~ 432 (608)
...+.++..+|..|...+++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3457788888888888888888877775
No 301
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=36.74 E-value=2.6e+02 Score=25.93 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHhhcHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHH
Q 040048 374 QAHLNKCTDAKRTRDWNTLIQETRAAIAGG---ADSAPQIYALQAEALLK 420 (608)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~la~~~~~ 420 (608)
.-+..++.+..+.++|++.+....++++.+ ++...+-..++..+|-.
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKN 78 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKN 78 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 445566777888899999999999999987 77766667777766644
No 302
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.61 E-value=48 Score=24.83 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=8.2
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 040048 271 GNEDYKAGNFAEALALYDAA 290 (608)
Q Consensus 271 g~~~~~~g~~~~Al~~~~~a 290 (608)
|...-..|+|++|+.+|.++
T Consensus 18 Ave~D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 33333444444444444333
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.47 E-value=1.6e+02 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 515 SEAAAAYGDGLG--LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 515 ~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
+++..+|.-+.. +.-..+..|...|..+...|++.+|.+.|+..++..-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 466677766665 3456788899999999999999999999999998653
No 304
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=36.40 E-value=48 Score=35.83 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALGR 313 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 313 (608)
.-.+.....|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|.
T Consensus 447 gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 447 GGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888888888888888888877776653
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.55 E-value=50 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAIS 292 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~ 292 (608)
+...|...-..|+|++|+.+|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555556666666666655543
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.91 E-value=2.6e+02 Score=25.10 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Q 040048 468 FEDALAAIQKAAKQDSNNKEVNMVMRKAKGVAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQ 547 (608)
Q Consensus 468 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 547 (608)
.+.|+..++.+-+..+-.......++.+-. .....++.+.|.|++|.+.+++.+..++.+...-..|..+-.+..-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk----~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVK----EAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 356666666655544433333221111111 1334567889999999999999999877777677777776655554
No 307
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=33.68 E-value=65 Score=24.12 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 040048 538 RAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 538 la~~~~~~g~~~~A~~~~~~al 559 (608)
.|.-.-..|+|++|+.+|..++
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333344444444444444433
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.58 E-value=1.8e+02 Score=24.49 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040048 515 SEAAAAYGDGLGL--DPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPG 564 (608)
Q Consensus 515 ~eA~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 564 (608)
+++..+|.-+... ....+..|...|..+...|++.+|.+.|+..++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4477777777654 4567889999999999999999999999999997533
No 309
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.96 E-value=3.4e+02 Score=26.09 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----------------------CC-----------------------------CC
Q 040048 270 MGNEDYKAGNFAEALALYDAAISI-----------------------DP-----------------------------NK 297 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~-----------------------~p-----------------------------~~ 297 (608)
++..+...|.|+.|+.++++-+.+ -| ..
T Consensus 34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l~~ 113 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGLDV 113 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCHHH
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCchhHHHHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEP----HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQVDIAKAKSL 373 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 373 (608)
.......|.-+...|++++|+..|+.++..-| ++..--..+-.+.....+|--|+..=..=-+ +..++..+...+
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~-l~~~~~kR~lEL 192 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRS-LKEGNTVRMLEL 192 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHH
Q ss_pred HHHHHHhHH---------------HHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 374 QAHLNKCTD---------------AKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 374 ~~~~~~~~~---------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
.+|+..+.+ ..+.++|..|....++.+++.|.....-............
T Consensus 193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.74 E-value=2.3e+02 Score=24.18 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040048 515 SEAAAAYGDGLG--LDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRP 563 (608)
Q Consensus 515 ~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 563 (608)
+++..+|..+.. +....+..|...|..+...|++.+|.+.|+.+++...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 346666766655 4556789999999999999999999999999999763
No 311
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.54 E-value=44 Score=25.26 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc
Q 040048 503 SNGNALFKQAKFSEAAAAYGDGLG 526 (608)
Q Consensus 503 ~lg~~~~~~g~~~eA~~~~~~al~ 526 (608)
..|.-.-..|+|++|+.+|..+++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555666777777777766654
No 312
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.12 E-value=74 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al 559 (608)
..|.-.-..|+|++|+.+|..++
T Consensus 16 ~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 16 ILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444444444
No 313
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.88 E-value=1.1e+02 Score=23.97 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=48.0
Q ss_pred HcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040048 510 KQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALNVRPGYSKARLRRADCFAKIEKWEASMQDY 589 (608)
Q Consensus 510 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 589 (608)
-....+||..+.+ .+...+....+-......+...|+|++|....+..- .++.--.+|.+-.+.|-.+++...+
T Consensus 18 G~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 3444555544333 233333333334445566777888888876554321 4555566677778888888777766
Q ss_pred -HHHHHhCCCCHHH
Q 040048 590 -EILKKEAPDDEEV 602 (608)
Q Consensus 590 -~~al~l~P~~~~~ 602 (608)
+-+.+-+|....+
T Consensus 92 ~~la~sg~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSSDPALADF 105 (115)
T ss_dssp HHHHTCSSHHHHHH
T ss_pred HHHHhCCCHHHHHH
Confidence 3333334444333
No 314
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.97 E-value=69 Score=23.94 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAIS 292 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al~ 292 (608)
+...|...-..|+|++|+.+|..+++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444445555555555554443
No 315
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.23 E-value=45 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 262 MDPETLKIMGNEDYKAGNFAEALALYDAAISID 294 (608)
Q Consensus 262 ~~~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~ 294 (608)
.++..+...|.-++..++|.+|+.+|+++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 445667777888888888888888888877554
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.14 E-value=1.4e+02 Score=29.21 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 040048 270 MGNEDYKAG---NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-----EPHYHRAHHRLANL 341 (608)
Q Consensus 270 lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~la~~ 341 (608)
|-..++..| +|.-|+-.+-..-+++|.... ..++..|.+++.. ...+..-|..+|..
T Consensus 241 LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy 305 (472)
T 3re2_A 241 LLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR---------------PPAEELFKEAITVAKREYSDHHIYPYTYLGGY 305 (472)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHHhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccchhhhhhh
Confidence 344455544 456677666666666665321 1144445554442 23345567778888
Q ss_pred HHHcCCHHHHHHHHHHhC
Q 040048 342 YLRLGEVEKAIYHFKHAG 359 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~al 359 (608)
+++.+++.+|+..+..+-
T Consensus 306 ~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 306 YYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHH
Confidence 888888888888887663
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=29.10 E-value=72 Score=24.42 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 267 LKIMGNEDYKAGNFAEALALYDAAI 291 (608)
Q Consensus 267 ~~~lg~~~~~~g~~~~Al~~~~~al 291 (608)
+...|...-..|+|++|+.+|..++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 318
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.60 E-value=3.3e+02 Score=24.20 Aligned_cols=66 Identities=6% Similarity=-0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040048 532 SVLLCNRAACRSKLGQFEKAIEDCNAALN--VRPGYSKARLRRADCFAKIEKWEASMQDYEILKKEAPD 598 (608)
Q Consensus 532 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 598 (608)
..+|...+..+ ..+...++...|.-... +.-..+..|...|..+...|++.+|.+.|+..++..-.
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 45666666654 23446788888888776 45667889999999999999999999999999987643
No 319
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.46 E-value=2.9e+02 Score=27.32 Aligned_cols=89 Identities=9% Similarity=-0.068 Sum_probs=62.7
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCC---------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Q 040048 506 NALFKQAKFSEAAAAYGDGLGLD---------------PYN--SVLLCNRAACRSKLGQFEKAIEDCNAALNV------- 561 (608)
Q Consensus 506 ~~~~~~g~~~eA~~~~~~al~~~---------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 561 (608)
.+.....+.++|++++++....- ... ..+...++..|...|+.++|...++++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 45556778899999888764321 011 345567888999999999999999988643
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040048 562 RPG-YSKARLRRADCFAKIEKWEASMQDYEILKK 594 (608)
Q Consensus 562 ~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 594 (608)
+|. +...|...+..|...+++..+...+-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 244556677888889999888777766665
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.96 E-value=74 Score=25.59 Aligned_cols=21 Identities=48% Similarity=0.724 Sum_probs=9.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 040048 270 MGNEDYKAGNFAEALALYDAA 290 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~a 290 (608)
.|...-..|+|++|+.+|..+
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~A 44 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHA 44 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 333333444444444444433
No 321
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=26.88 E-value=8.2e+02 Score=28.69 Aligned_cols=151 Identities=11% Similarity=-0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-------------------------------
Q 040048 264 PETLKIMGNEDYKAGNFAEALALYDAAISIDPNKASYRSNKTAALIALG------------------------------- 312 (608)
Q Consensus 264 ~~~~~~lg~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g------------------------------- 312 (608)
.+++..+=..++..-+.+++.++|++.++..|++..++..+-..+....
T Consensus 1107 ~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1186 (1354)
T 3lxu_X 1107 AESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQ 1186 (1354)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhh
Q ss_pred -----CHHHHHHHHHHHHhhCCCC------------------------------HHHHHHHHHHHHHcC--------CHH
Q 040048 313 -----RLLEAVFECREAIRIEPHY------------------------------HRAHHRLANLYLRLG--------EVE 349 (608)
Q Consensus 313 -----~~~eA~~~~~~al~~~p~~------------------------------~~~~~~la~~~~~~g--------~~~ 349 (608)
..++-++..+.++..-..+ .+++...|.++..+. ..+
T Consensus 1187 ~~~~~~~~~ii~~ad~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~ 1266 (1354)
T 3lxu_X 1187 KKVRSALERIVKLADKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLA 1266 (1354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhHHHHHhhcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHcC
Q 040048 350 KAIYHFKHAGPEADQVDIAKAKSLQAHLNKCTDAKRTRDWNTLIQETRAAIAGGADSAPQIYALQAEALLKLH 422 (608)
Q Consensus 350 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~la~~~~~~g 422 (608)
+-.+.|.+.++-.+..+ .........-....+.|-.|++.+.++++..+ ..+.+..++.++..+|
T Consensus 1267 ~~~~~~~el~k~~d~~d------~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~--~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1267 EINELYTEIIKFVDAND------SKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR--TRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHTTSSCTTS------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccCC------ceeehhHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHcC
No 322
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.14 E-value=1.6e+02 Score=22.56 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 040048 269 IMGNEDYKAGNFAEALALYDAAISIDPNKA----SYRSNK--TAALIALGRLLEAVFECREAIR 326 (608)
Q Consensus 269 ~lg~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~l--a~~~~~~g~~~eA~~~~~~al~ 326 (608)
..|..++..|+|=+|-+.++.+....|... ..+..+ |......|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 456677778888888888888777765421 112222 2333345666 7777776655
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.84 E-value=3.2e+02 Score=24.64 Aligned_cols=71 Identities=13% Similarity=-0.018 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040048 284 LALYDAAISIDPNKA---------SYRSNKTAALIALGRLLEAVFECREAIR--IEPHYHRAHHRLANLYLRLGEVEKAI 352 (608)
Q Consensus 284 l~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 352 (608)
..++++++....++. .+|..++.. .+++...|.-+.. +.-..+..|...|..+...|++.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 466777776544432 234333332 2466667766654 55667888999999999999999999
Q ss_pred HHHHHhCC
Q 040048 353 YHFKHAGP 360 (608)
Q Consensus 353 ~~~~~al~ 360 (608)
.+|+..+.
T Consensus 171 ~Vy~~Gi~ 178 (223)
T 4aez_C 171 EVYQKGKR 178 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 324
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.57 E-value=48 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040048 513 KFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALN 560 (608)
Q Consensus 513 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 560 (608)
.+++|..+..++|.++ ..|+-++|+.+|++.+.
T Consensus 18 ~h~~AF~~Is~AL~~D---------------E~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD---------------ELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 3555555555555543 23777777777777654
No 325
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.01 E-value=4.2e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 334 AHHRLANLYLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 334 ~~~~la~~~~~~g~~~~A~~~~~~a 358 (608)
-|..+|-.+++.+++.+|+..+..+
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~a 329 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADT 329 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhh
Confidence 3444455555555555555554443
No 326
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.00 E-value=4.8e+02 Score=24.97 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----------------------------------------CCCC-----------
Q 040048 270 MGNEDYKAGNFAEALALYDAAISI-----------------------------------------DPNK----------- 297 (608)
Q Consensus 270 lg~~~~~~g~~~~Al~~~~~al~~-----------------------------------------~p~~----------- 297 (608)
++..+...|.|+.|+.++++-+.+ ++.+
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 101 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLND 101 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHH
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCCCCc---hhHHHH
Q 040048 298 ASYRSNKTAALIALGRLLEAVFECREAIRIEP----HYHRAHHRLANLYLRLGEVEKAIYHFKHAGPEADQ---VDIAKA 370 (608)
Q Consensus 298 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~p---~~~~~~ 370 (608)
.......|.-+...|++++|+..|+.+|..-| ++..--..+-.+.....+|--|+..=..=.. +.. ++..+.
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~-l~~~~~~~~kR~ 180 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKK-LPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCchhHHHH
Q ss_pred HHHHHHHHHhHH---------------HHHhhcHHHHHHHHHHHHHcCCC
Q 040048 371 KSLQAHLNKCTD---------------AKRTRDWNTLIQETRAAIAGGAD 405 (608)
Q Consensus 371 ~~~~~~~~~~~~---------------~~~~~~~~~A~~~~~~al~~~~~ 405 (608)
..+.+|+..+.+ ..+.++|..|....++.+++.|.
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 327
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=23.64 E-value=5.4e+02 Score=25.48 Aligned_cols=29 Identities=3% Similarity=-0.012 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHcCChHHHHHHhhcC
Q 040048 406 SAPQIYALQAEALLKLHKHQEADETLKNG 434 (608)
Q Consensus 406 ~~~~~~~~la~~~~~~g~~~eA~~~l~~a 434 (608)
..+.+...||.-+...|+.+.|.-+|--+
T Consensus 246 ef~~Lc~~LG~RL~~~g~~~~A~lCYi~A 274 (399)
T 2pm7_A 246 QRNEMMIKLGDRMKENGHRQDSLTLYLAA 274 (399)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhHHHHhh
Confidence 33455566676666666666665555433
No 328
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.55 E-value=1.2e+02 Score=23.19 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al 559 (608)
...|.-.-..|+|++|+.+|..++
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444455555555554444
No 329
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=23.37 E-value=1.2e+02 Score=22.54 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 040048 536 CNRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 536 ~~la~~~~~~g~~~~A~~~~~~al 559 (608)
...|.-.-..|+|++|+.+|..++
T Consensus 17 ~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 17 VQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444555555555555444
No 330
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.97 E-value=1.4e+02 Score=32.16 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcC
Q 040048 498 VAAARSNGNALFKQAKFSEAAAAYGDGLGLDPYNSVLLCNRAACRSKLG 546 (608)
Q Consensus 498 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 546 (608)
.......|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4445566667777777777777777777777777777777777766665
No 331
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=21.93 E-value=3.5e+02 Score=22.96 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=54.0
Q ss_pred HHHHHHHcCChHHHHHHhhcCCCCCCcccccccCCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCChHHHHHH
Q 040048 414 QAEALLKLHKHQEADETLKNGPNFDVDETTRFFGPIGNANLLVVRAQVNLACGRFE-DALAAIQKAAKQDSNNKEVNMVM 492 (608)
Q Consensus 414 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l 492 (608)
-+...+-..+|.+.+..++..- |+.. ....-+.+|..|.....+. +..+.....+.+..+. -+
T Consensus 14 ~a~~afl~~dYs~VI~~L~~~~---~~~L--------p~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde--~y--- 77 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLEDYA---PEDM--------PYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDE--QY--- 77 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTTSC---GGGS--------CHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCH--HH---
T ss_pred HHHHHHHHhhHHHHHHHHhcCC---hhhC--------ChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCH--HH---
Confidence 3556667788888888887652 2211 1678888999999887764 3333333333333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 040048 493 RKAKGVAAARSNGNALFKQAKFSEAAAAYGDG 524 (608)
Q Consensus 493 ~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 524 (608)
.+=+++.-.|++++|+.+....
T Consensus 78 ----------L~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 78 ----------MLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp ----------HHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHcCCchHHHHHHHHhc
Confidence 2227778889999999987765
No 332
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.78 E-value=1.2e+02 Score=24.35 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 040048 537 NRAACRSKLGQFEKAIEDCNAAL 559 (608)
Q Consensus 537 ~la~~~~~~g~~~~A~~~~~~al 559 (608)
..|.-.-..|+|++|+.+|..++
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 33433444455555555555444
No 333
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.72 E-value=90 Score=25.01 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhcC
Q 040048 279 NFAEALALYDAAISID 294 (608)
Q Consensus 279 ~~~~Al~~~~~al~~~ 294 (608)
.+++|..+..++|.++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3556666666666654
No 334
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.79 E-value=2.3e+02 Score=21.55 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=12.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Q 040048 539 AACRSKLGQFEKAIEDCNAALNVR 562 (608)
Q Consensus 539 a~~~~~~g~~~~A~~~~~~al~~~ 562 (608)
|..++..|+|=+|-+.++.+....
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC
Confidence 334444455555555555555544
No 335
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.77 E-value=2.3e+02 Score=28.24 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=44.2
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 040048 270 MGNEDYKAG---NFAEALALYDAAISIDPNKASYRSNKTAALIALGRLLEAVFECREAIRI-----EPHYHRAHHRLANL 341 (608)
Q Consensus 270 lg~~~~~~g---~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~la~~ 341 (608)
|-..++..| +|.-|+-.+-..-++.|..... .++..|.+++.. ...+..-|..+|..
T Consensus 263 LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy 327 (550)
T 3u84_A 263 LLWLLYDLGHLERYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGY 327 (550)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchh
Confidence 344455544 5566777776666666653211 134444444432 23345567777888
Q ss_pred HHHcCCHHHHHHHHHHh
Q 040048 342 YLRLGEVEKAIYHFKHA 358 (608)
Q Consensus 342 ~~~~g~~~~A~~~~~~a 358 (608)
+++.+++.+|+..+..+
T Consensus 328 ~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 328 HCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHH
Confidence 88888888888887765
Done!